BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035610
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFA 94
K G +KTW RRWFIL ++F+ T PRG IP+ L+++ ED KP
Sbjct: 11 KLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNC 64
Query: 95 FE 96
FE
Sbjct: 65 FE 66
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFA 94
K G +KTW RRWFIL ++F+ T PRG IP+ L+++ ED KP
Sbjct: 221 KLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNC 274
Query: 95 FE 96
FE
Sbjct: 275 FE 276
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFA 94
K G +KTW RRWFIL ++F+ T PRG IP+ L+++ ED KP
Sbjct: 11 KLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNC 64
Query: 95 FE 96
FE
Sbjct: 65 FE 66
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFA 94
K G +KTW RRWFIL ++F+ T PRG IP+ L+++ ED KP
Sbjct: 221 KLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNC 274
Query: 95 FE 96
FE
Sbjct: 275 FE 276
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 28/111 (25%)
Query: 37 GDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFAFE 96
G +KTW RRWFIL ++F+ T PRG IP+ L+++ +D KP FE
Sbjct: 22 GGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVDDP-RKPNCFE 75
Query: 97 H---------------------SRGGYTMYSV-ADTEKEKGERINSIGRAI 125
G + +Y + A T++EK E I SI A+
Sbjct: 76 LYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAV 126
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology
Domain Unliganded
Length = 138
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 37 GDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFAFE 96
G +KTW RRWFIL ++F+ T PRG IP+ L+++ ED KP FE
Sbjct: 26 GGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNCFE 79
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFA 94
K G +KTW RRWFIL ++F+ T PRG IP+ L+++ D KP
Sbjct: 13 KLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREVLDP-RKPNC 66
Query: 95 FE 96
FE
Sbjct: 67 FE 68
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 35 KQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVK-CAE-DVLNKP 92
KQG +K W RR+F L + +FK P IP+ V+ C + D++ +
Sbjct: 22 KQGAVMKNWKRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQECKQSDIMMRD 77
Query: 93 FAFEHSRGGYTMYSVADTEKEKGERINSIGRAIV 126
FE T Y AD+ +E I ++ AIV
Sbjct: 78 NLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIV 111
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHFWFKDSHN 63
G KQG +KTW RWF L + E +FKD +
Sbjct: 22 GYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMS 54
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 25 SQPGAIGPANKQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKC 84
S P +G KQ +K W +R+F+L+ + +++KD + + P+G + + C +
Sbjct: 6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED----TKPQGCMYLPGCTIKEI 61
Query: 85 AED 87
A +
Sbjct: 62 ATN 64
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 40 IKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDVLNKPFAFEHSR 99
+K W +RWF+L F+++D G +P + + +ED +N+ +AF+ +
Sbjct: 35 MKLWKKRWFVLSDLCLFYYRDEKE--EGILGSILLP-SFQIALLTSEDHINRKYAFKAAH 91
Query: 100 GGY-TMYSVADTEKEKGERINS-IGRAIVQHS 129
T Y DT KE + + + A+VQ S
Sbjct: 92 PNMRTYYFCTDTGKEMELWMKAMLDAALVQTS 123
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In
Complex With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 34 NKQGDYIKTWLRRWFILKQ-GEHFWFKDS-HNITRGSTPRGFIPVGTCLTVK 83
+K+G+YIKTW R+F+LK G +K+ ++ + P V C +K
Sbjct: 13 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 64
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 34 NKQGDYIKTWLRRWFILKQ-GEHFWFKDS-HNITRGSTPRGFIPVGTCLTVK 83
+K+G+YIKTW R+F+LK G +K+ ++ + P V C +K
Sbjct: 16 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 67
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Pkb Alpha
Length = 121
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
G +K+G+YIKTW R+F+LK F + + ++ + P V C +K
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 64
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In
Complex With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
G +K+G+YIKTW R+F+LK F + + ++ + P V C +K
Sbjct: 12 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 66
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
G +K+G+YIKTW R+F+LK F + + ++ + P V C +K
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 64
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 40 IKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGT--CLTVKCAEDVLNK-PFAFE 96
+K W +RWF+L F++KD + + G IP+ + V+ ++++ K F E
Sbjct: 36 VKQWNKRWFVLVDRCLFYYKDE----KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAE 91
Query: 97 HSRGGYTMYSVADTEKEKGERINSIGRA 124
H+ G T + A++ +E+ I ++G A
Sbjct: 92 HA-GVRTYFFSAESPEEQEAWIQAMGEA 118
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology
Domain Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
G +K+G YIKTW R+F+LK F + + ++ + P V C +K
Sbjct: 12 GWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 66
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology
Domain Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
G +K+G YIKTW R+F+LK F + + ++ + P V C +K
Sbjct: 11 GWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 65
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 34 NKQGDYIKTWLRRWFILKQGEHF--WFKDSHNITRGSTPRGFIPVGTCLTVK 83
+K+G+YIKTW R+F+LK F + + ++ + P V C K
Sbjct: 15 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLXK 66
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTC 79
G K +Y+ W RWF+L G ++ ++ +GS +G I + C
Sbjct: 11 GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKMAVC 57
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 40 IKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGT--CLTVKCAEDVLNK-PFAFE 96
+K W +RWF+L F++KD + + G IP+ + V+ ++++ K F E
Sbjct: 25 VKQWNKRWFVLVDRCLFYYKDE----KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAE 80
Query: 97 HSRGGYTMYSVADTEKEKGERINSIGRA 124
H+ G T + A++ +E+ I ++G A
Sbjct: 81 HA-GVRTYFFSAESPEEQEAWIQAMGEA 107
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 34 NKQGDYIKTWLRRWFILKQGEHF 56
+K+G+YIKTW R+F+LK F
Sbjct: 13 HKRGEYIKTWRPRYFLLKSDGSF 35
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology
Domain
Length = 103
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEHFWFKDSHNITRGSTPRGFIPVGTC 79
G K +Y+ W RWF+L G ++ ++ +GS +G I C
Sbjct: 3 GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKXAVC 49
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 31 GPANKQGDYIKTWLRRWFILK-QGEHFWFKDSHNITRGSTPRGFIPVGTCLTVK 83
G K+G+YIK W R+F+LK G +K+ P V C +K
Sbjct: 11 GWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMK 64
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology
Domain In Complex With Inositol
1,3,4,5-Tetrakisphosphate
Length = 123
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 40 IKTWLRRWFILKQGEHFWFKDS 61
++ W RRWF+L F++KDS
Sbjct: 25 LRLWKRRWFVLSGHCLFYYKDS 46
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 31 GPANKQGDYIKTWLRRWFILKQGEH 55
G K+G ++K W RWF+L + +H
Sbjct: 12 GILYKKGAFMKPWKARWFVLDKTKH 36
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 37 GDYIKTWLRRWFILKQGEHFWFK 59
G + +W RRW +LK WF+
Sbjct: 31 GGLMNSWKRRWCVLKDETFLWFR 53
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 41 KTWLRRWFILKQGEHFWFK-DSHNITRGST 69
+ W +RWF+L+Q + +F+ DS +G+
Sbjct: 77 RNWKKRWFVLRQSKLMYFENDSEEKLKGTV 106
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 5 WRASSGQDPNPVDYKGIEFWSQPGAIGPAN--KQGDYIKTWLRRWF 48
W ASSG DP P+ PA+ K+ D T+++RW
Sbjct: 391 WSASSGMDPKPLR-----------IFNPASQAKKFDATATYIKRWL 425
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 5 WRASSGQDPNPVDYKGIEFWSQPGAIGPAN--KQGDYIKTWLRRWF 48
W ASSG DP P+ PA+ K+ D T+++RW
Sbjct: 392 WSASSGMDPKPLR-----------IFNPASQAKKFDATATYIKRWL 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,066,660
Number of Sequences: 62578
Number of extensions: 213172
Number of successful extensions: 476
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 43
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)