BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035612
         (534 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F35|D Chain D, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|B Chain B, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|A Chain A, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|C Chain C, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
          Length = 449

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 203/443 (45%), Gaps = 43/443 (9%)

Query: 72  LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILAL 131
           +  LA++   WLTEA+ + +T++        FGI       +++ + +I L LG F LA 
Sbjct: 36  ISXLAFIAVLWLTEALHVTVTAILVPVXAVFFGIFETQAALNNFANSIIFLFLGGFALAA 95

Query: 132 AVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGI 191
           A  H  + K +A  +     G+       L G+   TA +S W+ N A A   +P+  G+
Sbjct: 96  AXHHQGLDKVIADKVLAXAQGKXSVAVFXLFGV---TALLSXWISNTATAAXXLPLVLGV 152

Query: 192 LQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPI 251
           L  +     +ST V      V+LGV YSA++GG++TL G+  N I          E   +
Sbjct: 153 LSKVDADKQRSTYVF-----VLLGVAYSASIGGIATLVGSPPNAIAAA-------EVG-L 199

Query: 252 SFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAE 311
           SF+ W  FG P A        AI  L++  + +     E LD+A +  +          +
Sbjct: 200 SFTDWXKFGLPTAXXXLPX--AIAILYFLLKPTLNGXFE-LDRAPVNWDK--------GK 248

Query: 312 KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEK 371
            + L +FG+ + LW+  S  +   G    F+     G A +      VVH          
Sbjct: 249 VVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALG-AILXLSFARVVH---------- 297

Query: 372 LMDWNKCKKLP-WNIILLLGAGFAIADGVRTSGLADDLSKAL-DFLEAAPYLAIAPIVCL 429
              W + +K   W ++LL G G  +++ ++ +G +  L+ AL D +       +  +V  
Sbjct: 298 ---WKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDXVSHXGIFVVILVVAT 354

Query: 430 ISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVG 489
               +TEF SN A+  L++P+   +A+     P+LL V  A+ A  +F LP  TP N + 
Sbjct: 355 FVVFLTEFASNTASAALLIPVFATVAEAFGXSPVLLSVLIAVAASCAFXLPVATPPNAIV 414

Query: 490 FTTGHIEIQDMIKTGLPLKIAGI 512
           F +GHI+  +  + GL L IA I
Sbjct: 415 FASGHIKQSEXXRVGLYLNIACI 437


>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
          Length = 402

 Score = 32.0 bits (71), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 16/108 (14%)

Query: 189 TGILQNLPEVPLQSTL-VRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPE 247
             ILQ  P+   Q TL   K    +  G +  +A+ G+  +  +G   ++VG+   +FPE
Sbjct: 288 KSILQRTPQEFYQDTLSFLKSNADLCYGAL--SAIPGLQPVRPSGAMYLMVGIEMEHFPE 345

Query: 248 -ANPISFSTWF------------CFGFPLALVIFVALWAILCLFYCSR 282
             N + F+               CF +P    + + +  ++ L  CSR
Sbjct: 346 FENDVEFTERLIAEQSVHCLPATCFEYPNFFRVVITVPEVMMLEACSR 393


>pdb|3UOE|A Chain A, The Crystal Structure Of Dehydrogenase From Sinorhizobium
           Meliloti
 pdb|3UOE|B Chain B, The Crystal Structure Of Dehydrogenase From Sinorhizobium
           Meliloti
          Length = 357

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 274 ILCLFYCSRGSG--PALSEYLDKANLKRELDMLGPMAF 309
           +L L   S G+G  PAL+ YLD+  L R LD   P+A 
Sbjct: 287 LLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAI 324


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,893,077
Number of Sequences: 62578
Number of extensions: 648132
Number of successful extensions: 1435
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 5
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)