Query 035612
Match_columns 534
No_of_seqs 281 out of 2302
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1281 Na+/dicarboxylate, Na+ 100.0 3.4E-66 7.5E-71 528.3 41.2 490 37-531 10-581 (586)
2 PF00939 Na_sulph_symp: Sodium 100.0 4E-62 8.7E-67 518.3 48.8 434 62-526 24-468 (471)
3 TIGR00785 dass anion transport 100.0 7.2E-53 1.6E-57 445.5 49.5 432 61-523 3-444 (444)
4 COG0471 CitT Di- and tricarbox 100.0 4.8E-49 1E-53 414.0 45.2 426 63-525 26-458 (461)
5 PRK15445 arsenical pump membra 100.0 1.2E-45 2.7E-50 387.6 43.7 408 71-520 3-421 (427)
6 cd01115 SLC13_permease Permeas 100.0 9.7E-45 2.1E-49 376.6 44.1 378 73-523 2-382 (382)
7 TIGR00935 2a45 arsenical pump 100.0 6.4E-45 1.4E-49 383.0 42.3 406 70-521 3-423 (429)
8 cd01116 P_permease Permease P 100.0 1.1E-44 2.3E-49 379.9 42.0 397 75-517 1-410 (413)
9 cd01118 ArsB_permease Anion pe 100.0 3.6E-44 7.9E-49 376.0 42.4 399 71-519 2-415 (416)
10 PLN00136 silicon transporter; 100.0 1.3E-39 2.8E-44 342.0 43.8 385 88-519 34-477 (482)
11 cd00625 ArsB_NhaD_permease Ani 100.0 2.5E-41 5.5E-46 352.8 28.5 386 80-517 2-394 (396)
12 cd01117 YbiR_permease Putative 100.0 8.6E-40 1.9E-44 339.5 38.7 365 86-517 10-382 (384)
13 COG1055 ArsB Na+/H+ antiporter 100.0 1.7E-37 3.6E-42 317.0 39.5 407 69-521 6-423 (424)
14 PRK09547 nhaB sodium/proton an 100.0 6.9E-34 1.5E-38 292.3 42.3 413 65-523 42-500 (513)
15 TIGR00774 NhaB Na+/H+ antiport 100.0 1.1E-32 2.4E-37 275.5 46.4 421 65-525 42-501 (515)
16 PLN00137 NHAD transporter fami 100.0 3.2E-33 6.9E-38 289.5 35.7 370 68-493 5-392 (424)
17 PF02040 ArsB: Arsenical pump 100.0 9.2E-32 2E-36 275.6 39.6 407 72-522 3-422 (423)
18 TIGR00775 NhaD Na+/H+ antiport 100.0 2.3E-31 5E-36 275.7 36.7 369 71-501 6-392 (420)
19 KOG2639 Sodium sulfate symport 100.0 1.3E-31 2.9E-36 267.3 24.5 420 73-528 183-683 (685)
20 TIGR00784 citMHS citrate trans 100.0 1.8E-29 4E-34 263.7 38.5 408 72-523 7-426 (431)
21 PF03600 CitMHS: Citrate trans 100.0 6.6E-29 1.4E-33 254.8 35.8 333 75-472 6-350 (351)
22 TIGR00786 dctM TRAP transporte 99.9 2.2E-24 4.8E-29 225.1 39.2 363 109-524 29-400 (405)
23 PRK09412 anaerobic C4-dicarbox 99.9 4.5E-22 9.7E-27 207.0 39.5 391 90-525 25-431 (433)
24 PRK15060 L-dehydroascorbate tr 99.9 3.3E-21 7.1E-26 197.8 41.7 366 109-526 45-418 (425)
25 COG1593 DctQ TRAP-type C4-dica 99.9 1.6E-20 3.5E-25 185.9 32.8 359 117-527 6-373 (379)
26 PF06808 DctM: DctM-like trans 99.9 4.4E-19 9.5E-24 184.5 36.3 358 112-520 47-412 (416)
27 TIGR00770 Dcu anaerobic c4-dic 99.9 1.3E-18 2.8E-23 180.1 39.5 372 88-506 19-404 (430)
28 PF02447 GntP_permease: GntP f 99.9 1.3E-18 2.7E-23 179.6 35.2 403 84-521 19-437 (441)
29 PRK10654 dcuC C4-dicarboxylate 99.9 1.6E-17 3.4E-22 172.9 40.3 360 117-522 77-450 (455)
30 TIGR00771 DcuC c4-dicarboxylat 99.8 5E-18 1.1E-22 174.3 33.2 361 109-512 12-387 (388)
31 PRK12489 anaerobic C4-dicarbox 99.8 2.7E-17 5.8E-22 168.9 34.6 392 89-525 24-441 (443)
32 COG2851 CitM H+/citrate sympor 99.8 2.5E-18 5.4E-23 166.6 24.5 405 74-523 9-428 (433)
33 TIGR02123 TRAP_fused TRAP tran 99.8 9.8E-17 2.1E-21 172.3 37.6 352 124-524 172-532 (613)
34 PRK14984 high-affinity glucona 99.8 1.4E-16 3.1E-21 163.6 36.8 408 76-521 11-433 (438)
35 PRK10472 low affinity gluconat 99.8 2.4E-16 5.2E-21 162.5 37.9 404 78-520 16-439 (445)
36 PRK09821 putative transporter; 99.8 1.3E-16 2.9E-21 164.8 35.3 414 75-521 14-449 (454)
37 cd01116 P_permease Permease P 99.8 5.6E-18 1.2E-22 177.8 24.9 189 70-274 219-411 (413)
38 PRK10034 fructuronate transpor 99.8 3.4E-16 7.4E-21 161.7 35.5 396 84-519 22-440 (447)
39 PF03606 DcuC: C4-dicarboxylat 99.8 1.7E-16 3.7E-21 167.3 33.2 369 118-521 79-462 (465)
40 PRK11588 hypothetical protein; 99.8 3.4E-16 7.3E-21 162.0 33.3 370 118-520 111-498 (506)
41 cd01118 ArsB_permease Anion pe 99.8 1.5E-17 3.2E-22 174.7 21.8 188 314-523 2-196 (416)
42 PLN00136 silicon transporter; 99.8 6.1E-17 1.3E-21 170.8 24.5 179 85-275 299-477 (482)
43 cd01115 SLC13_permease Permeas 99.8 8E-17 1.7E-21 167.4 23.8 185 73-278 192-381 (382)
44 TIGR00785 dass anion transport 99.8 6.8E-17 1.5E-21 171.1 22.7 193 65-276 245-441 (444)
45 TIGR00791 gntP gluconate trans 99.8 1.5E-14 3.2E-19 152.4 40.0 404 76-520 11-434 (440)
46 COG1288 Predicted membrane pro 99.8 1.1E-16 2.5E-21 158.7 21.7 359 121-520 103-476 (481)
47 COG2610 GntT H+/gluconate symp 99.7 1.7E-14 3.6E-19 147.4 37.3 404 75-517 11-433 (442)
48 PRK15445 arsenical pump membra 99.7 2.3E-16 4.9E-21 166.0 22.3 190 314-525 3-199 (427)
49 TIGR00935 2a45 arsenical pump 99.7 5.5E-15 1.2E-19 155.8 25.1 189 69-276 225-422 (429)
50 COG0471 CitT Di- and tricarbox 99.7 1.5E-15 3.2E-20 160.4 20.5 193 67-280 261-457 (461)
51 PF00939 Na_sulph_symp: Sodium 99.7 1.1E-15 2.3E-20 163.0 19.3 195 65-279 265-465 (471)
52 PRK09921 permease DsdX; Provis 99.7 5.7E-13 1.2E-17 138.7 38.7 405 77-521 17-440 (445)
53 cd01117 YbiR_permease Putative 99.7 2.1E-15 4.5E-20 156.8 20.0 168 346-523 12-181 (384)
54 TIGR00819 ydaH p-Aminobenzoyl- 99.7 1E-12 2.2E-17 136.8 37.2 363 130-523 97-495 (513)
55 PRK09804 putative cryptic C4-d 99.7 1.1E-12 2.3E-17 133.8 35.3 362 117-521 74-452 (455)
56 COG4664 FcbT3 TRAP-type mannit 99.6 2.7E-13 5.9E-18 129.7 28.3 367 108-527 55-440 (447)
57 cd00625 ArsB_NhaD_permease Ani 99.6 2E-15 4.3E-20 157.7 15.3 172 346-527 10-184 (396)
58 COG1055 ArsB Na+/H+ antiporter 99.6 2.9E-14 6.3E-19 146.5 18.0 168 347-523 26-197 (424)
59 PF02040 ArsB: Arsenical pump 99.6 5.8E-14 1.3E-18 144.6 19.7 186 315-522 3-195 (423)
60 PRK11339 abgT putative aminobe 99.6 2E-11 4.3E-16 126.7 36.4 374 121-529 92-497 (508)
61 TIGR00529 AF0261 converved hyp 99.6 4.9E-11 1.1E-15 122.4 39.2 360 78-514 11-379 (387)
62 PF06450 NhaB: Bacterial Na+/H 99.6 7.1E-12 1.5E-16 122.5 29.0 420 63-522 40-499 (515)
63 PRK09547 nhaB sodium/proton an 99.5 5.6E-13 1.2E-17 138.2 21.7 179 78-279 312-500 (513)
64 KOG2639 Sodium sulfate symport 99.5 1.1E-12 2.4E-17 132.6 19.4 194 68-275 469-675 (685)
65 PF03600 CitMHS: Citrate trans 99.5 7.4E-13 1.6E-17 136.0 18.7 150 371-521 40-193 (351)
66 PLN00137 NHAD transporter fami 99.5 1.5E-12 3.2E-17 135.6 18.1 190 308-520 2-200 (424)
67 COG2056 Predicted permease [Ge 99.4 4.7E-10 1E-14 108.7 31.8 383 93-515 25-441 (444)
68 PF03605 DcuA_DcuB: Anaerobic 99.4 2.1E-10 4.5E-15 113.1 26.7 334 89-462 20-364 (364)
69 TIGR00775 NhaD Na+/H+ antiport 99.4 2.6E-11 5.6E-16 126.3 18.4 181 312-519 4-195 (420)
70 KOG1281 Na+/dicarboxylate, Na+ 99.3 5.2E-12 1.1E-16 131.0 11.4 175 72-270 385-564 (586)
71 PF03806 ABG_transport: AbgT p 99.3 5.4E-09 1.2E-13 108.2 32.2 372 123-524 84-489 (502)
72 COG3067 NhaB Na+/H+ antiporter 99.3 3.1E-09 6.7E-14 101.8 26.2 417 66-522 43-499 (516)
73 TIGR00931 antiport_nhaC Na+/H+ 99.3 1.5E-07 3.3E-12 98.8 40.7 355 106-505 50-431 (454)
74 PF07158 MatC_N: Dicarboxylate 99.3 3.1E-10 6.8E-15 98.8 16.9 126 71-199 7-134 (149)
75 PF04165 DUF401: Protein of un 99.3 3.8E-08 8.3E-13 100.5 34.3 362 73-517 6-380 (385)
76 TIGR00774 NhaB Na+/H+ antiport 99.2 1.6E-10 3.5E-15 117.1 15.8 150 371-522 79-262 (515)
77 COG3069 DcuC C4-dicarboxylate 99.2 5.2E-09 1.1E-13 102.1 24.0 363 114-518 70-445 (451)
78 COG2704 DcuB Anaerobic C4-dica 99.1 3.8E-09 8.2E-14 102.9 18.9 324 115-487 46-391 (436)
79 TIGR00784 citMHS citrate trans 99.1 1.8E-08 3.9E-13 105.9 23.2 177 76-274 239-421 (431)
80 COG2978 AbgT Putative p-aminob 99.0 9E-07 2E-11 89.3 30.9 367 130-529 102-504 (516)
81 TIGR00786 dctM TRAP transporte 98.9 2.1E-07 4.6E-12 97.4 23.5 147 104-274 241-394 (405)
82 PRK09412 anaerobic C4-dicarbox 98.9 3.1E-08 6.6E-13 103.7 16.5 144 379-523 44-191 (433)
83 COG1757 NhaC Na+/H+ antiporter 98.9 8.2E-06 1.8E-10 86.7 34.3 353 118-508 84-450 (485)
84 PF02652 Lactate_perm: L-lacta 98.9 1.4E-05 3.1E-10 85.1 34.8 134 380-519 383-519 (522)
85 PRK12489 anaerobic C4-dicarbox 98.8 2.3E-07 4.9E-12 96.1 17.7 143 379-523 44-196 (443)
86 TIGR00770 Dcu anaerobic c4-dic 98.7 9.1E-07 2E-11 92.3 18.2 142 379-522 40-186 (430)
87 TIGR00366 conserved hypothetic 98.7 1.5E-05 3.3E-10 81.6 26.3 123 380-507 306-435 (438)
88 PF07158 MatC_N: Dicarboxylate 98.6 1.3E-06 2.9E-11 76.3 15.1 122 346-475 24-147 (149)
89 PRK10654 dcuC C4-dicarboxylate 98.5 2.5E-05 5.5E-10 82.0 23.7 153 104-279 288-451 (455)
90 PRK10420 L-lactate permease; P 98.5 0.00037 7.9E-09 74.8 32.5 138 380-523 403-543 (551)
91 TIGR00795 lctP L-lactate trans 98.5 0.00079 1.7E-08 72.2 34.7 137 380-522 389-528 (530)
92 COG1620 LldP L-lactate permeas 98.5 0.00085 1.9E-08 69.8 32.1 138 380-523 376-516 (522)
93 COG4666 TRAP-type uncharacteri 98.4 9.7E-06 2.1E-10 85.4 17.8 310 125-482 194-516 (642)
94 PF02667 SCFA_trans: Short cha 98.4 0.00013 2.9E-09 75.0 25.1 134 379-520 308-451 (453)
95 PRK09695 glycolate transporter 98.4 0.0014 3.1E-08 70.5 32.5 138 380-523 411-551 (560)
96 PRK15060 L-dehydroascorbate tr 98.3 0.00025 5.4E-09 73.7 24.0 147 105-274 258-410 (425)
97 COG1593 DctQ TRAP-type C4-dica 98.3 0.00019 4.2E-09 72.2 22.3 135 118-275 231-365 (379)
98 PRK11339 abgT putative aminobe 98.3 0.00034 7.3E-09 73.5 24.4 152 106-271 327-485 (508)
99 TIGR00819 ydaH p-Aminobenzoyl- 98.2 0.00088 1.9E-08 70.7 26.2 152 106-271 329-487 (513)
100 TIGR00771 DcuC c4-dicarboxylat 98.2 0.00017 3.8E-09 74.6 19.7 128 118-268 259-387 (388)
101 PRK11588 hypothetical protein; 98.1 0.00068 1.5E-08 71.3 21.6 151 104-275 335-497 (506)
102 TIGR02123 TRAP_fused TRAP tran 98.1 0.0021 4.4E-08 70.2 26.0 134 118-273 392-525 (613)
103 PF03606 DcuC: C4-dicarboxylat 98.0 0.00025 5.4E-09 75.3 18.4 151 105-276 304-461 (465)
104 COG1906 Uncharacterized conser 98.0 0.0073 1.6E-07 58.7 25.8 346 86-515 21-381 (388)
105 PF06808 DctM: DctM-like trans 98.0 0.00098 2.1E-08 69.8 21.9 146 104-272 257-408 (416)
106 PF07854 DUF1646: Protein of u 98.0 0.005 1.1E-07 60.1 24.6 43 476-518 301-343 (347)
107 PF03553 Na_H_antiporter: Na+/ 98.0 0.00086 1.9E-08 67.4 20.5 102 118-233 162-264 (303)
108 PF03553 Na_H_antiporter: Na+/ 97.9 0.0018 3.9E-08 65.0 20.1 108 384-492 162-271 (303)
109 PF03806 ABG_transport: AbgT p 97.8 0.012 2.5E-07 61.9 25.1 154 106-273 322-482 (502)
110 TIGR00791 gntP gluconate trans 97.7 0.0031 6.7E-08 66.8 20.2 129 379-512 55-186 (440)
111 TIGR00931 antiport_nhaC Na+/H+ 97.7 0.0047 1E-07 65.3 20.6 138 384-524 68-207 (454)
112 PRK09804 putative cryptic C4-d 97.6 0.026 5.7E-07 58.6 23.4 141 112-275 306-450 (455)
113 COG1288 Predicted membrane pro 97.4 0.0077 1.7E-07 61.3 16.8 152 102-274 316-474 (481)
114 COG2851 CitM H+/citrate sympor 97.4 0.0098 2.1E-07 59.3 16.9 172 72-267 237-416 (433)
115 COG2610 GntT H+/gluconate symp 97.3 0.017 3.7E-07 60.0 18.5 128 380-511 57-186 (442)
116 PF03605 DcuA_DcuB: Anaerobic 97.3 0.0013 2.8E-08 65.7 9.5 143 379-524 40-189 (364)
117 PRK10034 fructuronate transpor 97.3 0.018 3.9E-07 60.4 18.4 131 379-514 58-191 (447)
118 TIGR00529 AF0261 converved hyp 97.3 0.023 5.1E-07 58.7 19.1 130 379-517 52-184 (387)
119 PF02447 GntP_permease: GntP f 97.2 0.014 3.1E-07 61.1 16.1 130 380-514 56-188 (441)
120 COG1757 NhaC Na+/H+ antiporter 97.1 0.053 1.2E-06 57.9 20.2 129 118-267 324-453 (485)
121 PRK09821 putative transporter; 97.0 0.047 1E-06 57.4 18.2 134 379-519 59-197 (454)
122 PRK10472 low affinity gluconat 96.9 0.046 1E-06 57.3 16.6 127 385-514 65-192 (445)
123 PF07399 DUF1504: Protein of u 96.9 0.51 1.1E-05 48.0 23.0 103 397-515 323-435 (438)
124 COG2978 AbgT Putative p-aminob 96.7 0.17 3.7E-06 52.1 18.8 131 131-275 365-496 (516)
125 COG2031 AtoE Short chain fatty 96.7 0.19 4.1E-06 50.9 18.3 132 380-517 307-441 (446)
126 PRK09921 permease DsdX; Provis 96.6 0.079 1.7E-06 55.9 16.1 126 385-514 66-192 (445)
127 COG4664 FcbT3 TRAP-type mannit 96.6 0.2 4.3E-06 49.5 17.3 147 104-272 276-429 (447)
128 PF06166 DUF979: Protein of un 96.6 0.16 3.5E-06 49.3 16.6 144 378-523 157-307 (308)
129 PF06149 DUF969: Protein of un 96.5 0.12 2.5E-06 47.7 14.3 174 95-276 26-210 (218)
130 COG2056 Predicted permease [Ge 96.4 0.23 4.9E-06 49.5 16.9 130 90-232 265-401 (444)
131 PRK14984 high-affinity glucona 96.4 0.18 3.9E-06 52.8 17.2 130 380-514 56-188 (438)
132 TIGR00366 conserved hypothetic 96.4 0.27 5.8E-06 51.0 18.2 133 105-263 291-435 (438)
133 PF02652 Lactate_perm: L-lacta 95.4 1.3 2.9E-05 47.6 18.8 143 102-272 366-516 (522)
134 PF06166 DUF979: Protein of un 95.2 1.8 3.8E-05 42.4 16.9 131 127-277 171-305 (308)
135 PF04165 DUF401: Protein of un 95.0 4.2 9.2E-05 42.0 20.6 170 73-273 206-380 (385)
136 PF07399 DUF1504: Protein of u 94.6 0.27 5.8E-06 50.0 10.0 136 109-272 299-436 (438)
137 PRK10420 L-lactate permease; P 94.4 3.4 7.4E-05 44.8 18.7 136 106-268 389-532 (551)
138 PF06450 NhaB: Bacterial Na+/H 94.3 0.75 1.6E-05 46.5 12.4 176 86-278 317-499 (515)
139 COG2704 DcuB Anaerobic C4-dica 94.3 0.033 7.2E-07 55.4 2.9 143 379-523 44-191 (436)
140 COG3817 Predicted membrane pro 94.1 0.68 1.5E-05 43.8 11.0 142 378-523 161-311 (313)
141 COG3069 DcuC C4-dicarboxylate 94.1 0.59 1.3E-05 46.9 11.2 140 385-528 75-219 (451)
142 TIGR00795 lctP L-lactate trans 93.9 3.5 7.7E-05 44.6 17.7 127 118-271 393-521 (530)
143 PRK09695 glycolate transporter 93.3 6.3 0.00014 42.9 18.4 124 118-268 415-540 (560)
144 COG1620 LldP L-lactate permeas 93.2 5.8 0.00013 42.1 17.1 144 105-273 361-510 (522)
145 PF07854 DUF1646: Protein of u 92.6 0.21 4.5E-06 49.1 5.3 46 222-275 299-344 (347)
146 PF13726 Na_H_antiport_2: Na+- 88.8 7.1 0.00015 31.0 9.7 65 86-150 17-87 (88)
147 COG4756 Predicted cation trans 87.6 0.44 9.6E-06 45.1 2.8 47 222-276 311-357 (367)
148 COG3817 Predicted membrane pro 87.1 21 0.00045 34.1 13.3 125 128-276 176-308 (313)
149 PF02667 SCFA_trans: Short cha 86.3 8.5 0.00018 40.4 11.5 129 118-272 313-447 (453)
150 COG3067 NhaB Na+/H+ antiporter 82.3 9.5 0.00021 37.8 9.2 177 86-279 317-500 (516)
151 COG4756 Predicted cation trans 82.2 49 0.0011 31.8 18.5 41 476-516 313-353 (367)
152 COG3819 Predicted membrane pro 80.2 48 0.001 30.4 18.1 157 104-273 37-209 (229)
153 COG4666 TRAP-type uncharacteri 77.8 44 0.00095 36.5 13.2 79 118-199 418-496 (642)
154 TIGR00825 EIIBC-GUT PTS system 73.0 6.8 0.00015 38.0 5.1 97 384-482 188-289 (331)
155 PF13194 DUF4010: Domain of un 69.8 1E+02 0.0022 29.1 12.5 35 142-185 9-43 (211)
156 COG3493 CitS Na+/citrate sympo 62.2 1.9E+02 0.0042 29.7 19.4 59 75-133 56-126 (438)
157 COG3732 SrlE Phosphotransferas 61.2 8.8 0.00019 36.7 3.3 98 383-482 184-286 (328)
158 PRK09458 pspB phage shock prot 53.6 30 0.00064 26.6 4.4 27 257-283 4-30 (75)
159 TIGR00704 NaPi_cotrn_rel Na/Pi 53.4 2.5E+02 0.0054 28.2 14.4 85 118-226 10-95 (307)
160 PF02690 Na_Pi_cotrans: Na+/Pi 52.9 96 0.0021 27.1 8.4 81 122-226 2-83 (142)
161 COG1906 Uncharacterized conser 52.8 2.6E+02 0.0055 28.2 15.2 77 109-194 249-328 (388)
162 COG3192 EutH Ethanolamine util 49.2 2.8E+02 0.006 27.5 11.3 69 118-200 5-78 (389)
163 PF05982 DUF897: Domain of unk 46.1 3.3E+02 0.0071 27.5 17.4 19 312-330 178-196 (327)
164 PF06667 PspB: Phage shock pro 45.7 45 0.00098 25.7 4.4 25 258-282 5-29 (75)
165 TIGR02976 phageshock_pspB phag 44.8 50 0.0011 25.5 4.6 25 258-282 5-29 (75)
166 TIGR00825 EIIBC-GUT PTS system 38.5 69 0.0015 31.4 5.4 71 109-182 179-249 (331)
167 COG1283 NptA Na+/phosphate sym 35.7 6.1E+02 0.013 27.6 15.9 117 384-515 139-256 (533)
168 PF02690 Na_Pi_cotrans: Na+/Pi 33.2 3.3E+02 0.0071 23.7 12.5 78 388-476 2-80 (142)
169 COG3088 CcmH Uncharacterized p 32.1 2.4E+02 0.0052 24.9 7.2 24 249-272 99-122 (153)
170 COG2995 PqiA Uncharacterized p 30.2 4E+02 0.0087 27.6 9.5 79 72-172 287-367 (418)
171 PF00446 GnRH: Gonadotropin-re 28.9 30 0.00066 15.7 0.7 7 11-17 4-10 (10)
172 COG1283 NptA Na+/phosphate sym 28.8 7.9E+02 0.017 26.7 17.1 80 124-226 14-98 (533)
173 PRK15086 ethanolamine utilizat 28.2 6.7E+02 0.014 25.7 12.7 69 385-464 6-80 (372)
174 TIGR00704 NaPi_cotrn_rel Na/Pi 26.0 6.4E+02 0.014 25.3 10.2 26 117-142 42-67 (307)
175 PRK15086 ethanolamine utilizat 25.7 7.4E+02 0.016 25.4 13.6 70 117-200 4-79 (372)
176 PF04971 Lysis_S: Lysis protei 24.8 62 0.0013 24.3 2.1 33 250-283 27-59 (68)
177 PF03390 2HCT: 2-hydroxycarbox 24.7 8.3E+02 0.018 25.6 30.6 71 63-133 27-109 (414)
178 COG2205 KdpD Osmosensitive K+ 21.6 4.2E+02 0.0091 30.3 8.5 74 71-147 427-500 (890)
179 COG0700 SpmB Uncharacterized m 21.4 5.8E+02 0.013 22.6 11.2 128 380-522 29-160 (162)
No 1
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-66 Score=528.35 Aligned_cols=490 Identities=37% Similarity=0.624 Sum_probs=430.5
Q ss_pred hhhhhhhH-HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhh
Q 035612 37 TIFTPNNF-YILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY 115 (534)
Q Consensus 37 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~ 115 (534)
.++.+|+. .+...|++..+.-.-...+.+ ++.+|++....+..+|++|++|.+++++++.+++++.|+++.+|+...|
T Consensus 10 ~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~-~e~~c~y~~~vm~~yw~~Ealpl~vtal~p~~l~p~~gi~~s~eva~~y 88 (586)
T KOG1281|consen 10 TLLQYRSLLVLNRTPLLLLPKKLDKLLHSS-EEARCAYVILVMAVYWVTEALPLAVTALLPIVLFPFFGIVRSNEVANEY 88 (586)
T ss_pred HHHHhhhhheeehhhhhhcchhhhhhcCCc-HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 44445552 333345554431111112333 4677999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Q 035612 116 MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 195 (534)
Q Consensus 116 ~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~ 195 (534)
.+|+..++.|..+++.++|++++|+|+|.++.+.+|. +|.++.+++|..++++|+|+||+|++++|+|++.++.+++
T Consensus 89 f~d~~~l~~~~l~~A~AvE~~~Lh~riaL~~~~~vg~---~P~~l~lg~m~~taflsmwisntA~tamm~pi~~avL~~l 165 (586)
T KOG1281|consen 89 FKDTNLLFLGGLIMALAVEKCNLHKRIALKVLRKVGV---EPARLMLGFMGVTAFLSMWISNTATTAMMIPIATAVLQEL 165 (586)
T ss_pred HhhhhHHHhhhHHHHHHHHHhhhhHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999996 6889999999999999999999999999999999999987
Q ss_pred CCCCc-----------------c--------------------h-----------------hhhhhhhhHHHHHHHHHhh
Q 035612 196 PEVPL-----------------Q--------------------S-----------------TLVRKYCKAVVLGVIYSAA 221 (534)
Q Consensus 196 g~~~~-----------------~--------------------~-----------------~~~~~~~~~l~l~i~~aa~ 221 (534)
....+ + . ++.+.+.+.+.++++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~ 245 (586)
T KOG1281|consen 166 PSFNDEEQHRMLESVSHLWAVEAIPTSFLVPLLTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAY 245 (586)
T ss_pred cccchhhhhhhHHHhhcchhhhcCCcccCCcchhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHh
Confidence 66211 0 0 0112367899999999999
Q ss_pred hccccccccchhHHHHHHHHhhhCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CCCcchh
Q 035612 222 VGGMSTLTGTGVNLILVGMWKTYFP-EANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRG----------SGPALSE 290 (534)
Q Consensus 222 igg~~t~~g~~~n~i~~~~~~~~~~-~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~----------~~~~~~~ 290 (534)
+||.+|.+|+.+|++..+.++..+| +....||.+|+.+++|+.+.++.+.|.++.++|.+.. +.+..++
T Consensus 246 igg~~titGT~pnlVll~~~~~~fp~s~~~~Nf~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~ 325 (586)
T KOG1281|consen 246 IGGTLTITGTAPNLVLLGNMNVRFPLSMWVSNFASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQN 325 (586)
T ss_pred hcchhhhcCCCccHHHHHHHHHhccccccccchHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHH
Confidence 9999999999999999999999998 4567899999999999999999999999888775211 1122233
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccc--cCchHHHHHHHHHHHhccCcccc-
Q 035612 291 YLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR--AGDGTASVSCDGNIVVHNSEHEA- 367 (534)
Q Consensus 291 ~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~va~l~~~ll~~l~~~~~~- 367 (534)
...+++++++|+++||++..|+.+.++|++++.+|++|++ ++.|||++.+++. ..|++++++++.+++.+|++.+.
T Consensus 326 ~~a~~~i~~~y~~lG~~~~~e~~v~ilfil~v~lw~tr~p-~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f 404 (586)
T KOG1281|consen 326 IVAKKVIKPEYDGLGPMFFAEKPVFILFILLVWLWFTRDP-GFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGF 404 (586)
T ss_pred HHHHHHhhHhhcccccchHHHHHHHHHHHHHHHHHHhcCC-CCccchHhhcCCccceehhhHHHHHHHHhheecccCccc
Confidence 4567788999999999999999999999999999999999 8899999988664 78999999999999999986541
Q ss_pred ------------ccCccccccccc-CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 035612 368 ------------KGEKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII 434 (534)
Q Consensus 368 ------------~~~~~l~~~~~~-~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l 434 (534)
..+++++|++.+ +++|+++++.+|+++++++.++||+.+|+++.+.++++.|.+.+.++++++..++
T Consensus 405 ~~~~~~~~~p~~~~~~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~ 484 (586)
T KOG1281|consen 405 GKSGFIAIIPIVVFFGLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVV 484 (586)
T ss_pred cccCcccccccccccCccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHH
Confidence 236889999974 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 435 TEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 435 t~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
|+|.||++++.+++|++.++|+++|.||.+++++.++++|+++++|+|+|||++++++|+.+.+||+|.|..+++.+.+.
T Consensus 485 TeF~Sntata~IfiPIl~ela~~l~~hplyl~lp~tl~~SfAf~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~ 564 (586)
T KOG1281|consen 485 TEFVSNTATASIFIPILAELAEALGIHPLYLMLPTTLACSFAFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAI 564 (586)
T ss_pred HHHhcchhheeehHHhHHHHHHhcCCCCceeehhHHHHHHHHHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 035612 515 MAFLMPTLGAYVFGTDG 531 (534)
Q Consensus 515 ~~~~~~~~~~~~~~~~~ 531 (534)
..+.++.|+..+|.+++
T Consensus 565 l~~~m~tw~~~~f~l~~ 581 (586)
T KOG1281|consen 565 LLLFMNTWTLGYFILGT 581 (586)
T ss_pred HHHHHHHHHHHhchhcc
Confidence 99999999999998664
No 2
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4e-62 Score=518.34 Aligned_cols=434 Identities=29% Similarity=0.551 Sum_probs=382.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCCh---HHHHhhhcchHHHHHHHHHHHHHHHHHhcH
Q 035612 62 LDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSA---DTVAHSYMDDVIALVLGSFILALAVEHYNI 138 (534)
Q Consensus 62 ~~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~---~~v~~~~~~~~i~li~g~~~l~~~l~~tGl 138 (534)
.++++++++++++++.++++|++|++|.++++++.+.++++++..++ ++++++|.|+++|+++|+++++.+++|||+
T Consensus 24 ~~l~~~~~~~l~i~~~~ii~w~te~iP~~vtal~~~~l~~~~~~~~~~~~~~~~s~f~s~~v~li~g~f~i~~al~ktgL 103 (471)
T PF00939_consen 24 EGLSPQGMRCLAIFLFAIILWITEAIPLPVTALLIIILLPVLGGVDPVAAKEAFSGFGSPTVWLIIGGFIIGAALEKTGL 103 (471)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCH
Confidence 35799999999999999999999999999999999999988888776 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHH-HHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHH
Q 035612 139 HKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAV-IMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGV 216 (534)
Q Consensus 139 ~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~-i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i 216 (534)
+||+|+++++++|+ +++++.++++..+.+++.++ |++++++ ++.|++.+++++.|.+++ +++++|+++.+++++
T Consensus 104 ~~Ria~~~l~~~g~---~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~~~~-~~~~~~~~~~l~l~~ 179 (471)
T PF00939_consen 104 DKRIALWLLKRFGG---SPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGSKPS-SKTPRNLGKALMLGI 179 (471)
T ss_pred HHHHHHHHHHHhCC---chheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccchhh-hhHHHHHHHHHHHHH
Confidence 99999999999987 56778889999999999998 7778765 566999999999998763 223457889999999
Q ss_pred HHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHH
Q 035612 217 IYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKAN 296 (534)
Q Consensus 217 ~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (534)
+++++++|+++++|+++|.+..+++++. .+.+++|.||+.+++|++++.+++.++++++.||++.++. + ..++.
T Consensus 180 ~~~a~~~g~~~~~g~~~n~i~~~~l~~~--~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~~~~~--~--~~~~~ 253 (471)
T PF00939_consen 180 AFAASIGGMGTLTGSAPNLIAAGFLESA--TGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPDVKNL--P--DGKEF 253 (471)
T ss_pred hhhccccccccccCCCchHHHHHHHHhh--cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--h--hhHHH
Confidence 9999999999999999999999999987 4789999999999999999999999999988998875432 1 24667
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccc
Q 035612 297 LKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWN 376 (534)
Q Consensus 297 ~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~ 376 (534)
.++|++++||++++||+.+.++.+++++|++++.|+. +.+.++++++++++ ++ ++++||
T Consensus 254 ~~~~~~~lg~~s~~Ek~~~~i~~~~i~lw~~~~~~~i------------~~~~va~~~~~ll~-~~--------~il~~~ 312 (471)
T PF00939_consen 254 IKKELKELGPMSKKEKKVLVIFLLTILLWITESFHGI------------DPAIVALLGAVLLF-LP--------GILTWK 312 (471)
T ss_pred HHHHHHhcCCCchhHhhhhhhhhhhhhcccCcccCCC------------CHHHHHHHHHHHHH-HH--------HhccHH
Confidence 8889999999999999999999999999999887652 45667776665555 44 489999
Q ss_pred c-c-cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccc-cHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 035612 377 K-C-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAA-PYLAIAPIVCLISAIITEFTSNNATTTLVLPLLI 452 (534)
Q Consensus 377 ~-~-~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~-~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~ 452 (534)
| . ++++|+++++++|++++|.+++++|+.+|+++.+.+. ++. +...+..++.+...+.++|+||+++++++.|++.
T Consensus 313 d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~ 392 (471)
T PF00939_consen 313 DAAQKKIPWGTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATVAILIPIVI 392 (471)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8 4 6899999999999999999999999999999999864 433 4444444445555667899999999999999999
Q ss_pred HHHHHc-CCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 035612 453 QIAKTM-HVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYV 526 (534)
Q Consensus 453 ~la~~~-g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~~ 526 (534)
+++.+. |.||...++.++++++++ +++|+++|+|++++|.|+++.||++|.|++.+++..++...+.++||..+
T Consensus 393 ~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~~~~~~w~~i 468 (471)
T PF00939_consen 393 SLAAALGGINPLALALIVAFASSFAGFLLPYSSPPNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIILVAYPYWKLI 468 (471)
T ss_pred HHhhhccCCChHHHHHHHHHHhhhccccCCcCCcceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999997 99999999999999999999999999999999999999999999998754
No 3
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=100.00 E-value=7.2e-53 Score=445.49 Aligned_cols=432 Identities=25% Similarity=0.434 Sum_probs=374.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH-HHHHHHhccCC---hHHHHhhhcchHHHHHHHHHHHHHHHHHh
Q 035612 61 KLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAP-LFLFPLFGISS---ADTVAHSYMDDVIALVLGSFILALAVEHY 136 (534)
Q Consensus 61 ~~~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~-~~l~~l~gi~~---~~~v~~~~~~~~i~li~g~~~l~~~l~~t 136 (534)
|.+++++++++++++++++++|++|++|.+++++++ ..++.++|+.+ ++|++++|.|++++++++++.++.++++|
T Consensus 3 ~~~l~~~~~~~l~i~~~~i~~w~~~~~~~~~~a~~~~~~~l~l~g~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~~t 82 (444)
T TIGR00785 3 PDGLNSGAWLLLAIFVAAIVGWILEPLPLPVTALLAIPIIAVLLGVLSAFKFKNALSGFADPTIWLFFGAFILATALVKT 82 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999999995 88889999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHH
Q 035612 137 NIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVA-AAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLG 215 (534)
Q Consensus 137 Gl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a-~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~ 215 (534)
|+.||+++++.++.+++ +++.....+++.+.+.+.+.||++ +++++.|++.+++++.|.+|+ +++++..+.++++
T Consensus 83 Gl~~~ia~~i~~~~~~~--~~~~~~~~~~~~~~l~~~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~--~~~~~~~~~l~~~ 158 (444)
T TIGR00785 83 GLGKRIAYKLVGKMGGT--TLGLGYFLVFLETLLAPMWPSNTARAGGILLPIIKSLLPLLGSKPE--KSPRKIGKYLMLG 158 (444)
T ss_pred CchHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHhhCchHhHhHHHHHHHHHHHHHHHhCCCCC--cccchHHHHHHHH
Confidence 99999999999998763 355556677777888888899999 779999999999999998872 3456777888899
Q ss_pred HHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHH
Q 035612 216 VIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKA 295 (534)
Q Consensus 216 i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (534)
+.++++++++++++|+++|+++.++.+|.. +.+++|.||+.++.|..+++.++.+.+.+++||++.++++ + .++
T Consensus 159 ~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~--g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~~~~~~~~~~--~--~~~ 232 (444)
T TIGR00785 159 IAYSASIGSSGFLTGSAPNALAAGILSKIL--GIQISWGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKD--E--VDL 232 (444)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHcCccccCCc--c--HHH
Confidence 999999999999999999999999998874 6789999999999999999999988888888876543211 1 123
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccc
Q 035612 296 NLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDW 375 (534)
Q Consensus 296 ~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~ 375 (534)
..++++++.++++++|+..+.++...+++|++++.++. +.+.++++++.++++. ++++|
T Consensus 233 ~~~~~~~~~~~~~~~e~~~l~v~~~~i~~~~~~~~~~~------------~~~~~al~~~~ll~~~---------g~~~~ 291 (444)
T TIGR00785 233 WAKEELEEMGPMSFREKALLGIFLLALLLWIFGGSLGI------------NASVVALLAVVLMLFL---------GIVTW 291 (444)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCC------------ChHHHHHHHHHHHHHh---------CcccH
Confidence 34567788899999999999999999999998765431 3455666666555443 47899
Q ss_pred ccc-cC-CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhc-ccc-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 035612 376 NKC-KK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLE-AAP-YLAIAPIVCLISAIITEFTSNNATTTLVLPLL 451 (534)
Q Consensus 376 ~~~-~~-v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~-~~~-~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~ 451 (534)
|+. ++ ++|+++++++|+++++.+++++|+.+|+++.+.+.. +.+ +.....++++.+.++++|.||++++.++.|++
T Consensus 292 ~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~ 371 (444)
T TIGR00785 292 KDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAHTAALVPIF 371 (444)
T ss_pred HHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 986 43 899999999999999999999999999999987653 444 55555677788888999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 452 IQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 452 ~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
.+++.+.|.||..+++..+++++.+ +++|+++++|.++++.++++++|++|.++|+.++.+++..++.+.||
T Consensus 372 ~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s~~n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~~~~~~~w 444 (444)
T TIGR00785 372 FSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGSGYVKIKDMWRVGAIIGIVGLIVLLLVGTLWW 444 (444)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCccceeecCCCccHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997 99999999999999999999999999999999999998888887764
No 4
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-49 Score=413.96 Aligned_cols=426 Identities=26% Similarity=0.437 Sum_probs=376.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhcc----CChHHHHhhhcchHHHHHHHHHHHHHHHHHhcH
Q 035612 63 DGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGI----SSADTVAHSYMDDVIALVLGSFILALAVEHYNI 138 (534)
Q Consensus 63 ~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi----~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl 138 (534)
..+...+ +.++++.++..|++|++|..+++++...+..+.+. .++++..+.+.+++++++++++.++.+++++|+
T Consensus 26 ~~~~~~~-~~a~~~~~~~~~i~~~~~~~~~~ll~~~~~~l~~~~~~~~~~~~~l~~~~~~~I~l~~~~f~~s~~~~~~gl 104 (461)
T COG0471 26 GLSGFAW-LFAILVAAIILWILEAIPLFALAILVIVLLVLSGFILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGL 104 (461)
T ss_pred ccCchHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhccccHHHHHHHhhccHHHHHHHHHHHHHHHHHhhH
Confidence 4565666 88999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHH
Q 035612 139 HKRLALNITILFCGEPMNPPLLLLGICGTTAFVS-MWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVI 217 (534)
Q Consensus 139 ~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS-~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~ 217 (534)
++|++++.++++|+ +++++.+.++.+++++| ++.||+++..++.|++.++.+..|.+++ +|..+.+.+.+.
T Consensus 105 ~~~la~~~l~~~~~---~p~~l~~~l~~~~~~ls~~~~sntat~~i~~piv~~~~~~~~~~~~-----~~~~~~l~~~i~ 176 (461)
T COG0471 105 GKRLALHLLRFFGT---TPRGLALGLVLLTLFLSPAFPSNTATGGIMLPLILSLSPLLGSPPR-----DKIGKRLILGIA 176 (461)
T ss_pred HHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHhCceecccchhHhhHHhhhcchhhcCCChH-----HHHHHHHHHHHH
Confidence 99999999999997 68899999999999999 9999999999999999999999998763 267788999999
Q ss_pred HHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHH
Q 035612 218 YSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANL 297 (534)
Q Consensus 218 ~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (534)
+++++++.++++|+++|.+..+.+++. . ++|.||++.+.|+.+++....+++.+..+++++.+ +.+ ..+...
T Consensus 177 ~~~~ig~~~~~ig~~~N~i~~~~~~~~---~--~~~~~w~~~~~p~~iv~l~~~~li~~~~~~~~~~~-~~~--~~~~~~ 248 (461)
T COG0471 177 LAANIGSALTPIGNPPNIIAAGLLNPI---S--LSWGEWFLAMLPLGILLLLLLLLLLYKLFPPREIK-ETP--NNPVAA 248 (461)
T ss_pred HHhHhhcccccccCCccHHHHHhhccc---C--CCHHHHHHHHhhHHHHHHHHHHHHHHhhcChHhhc-cCc--chHHHH
Confidence 999999999999999999999877652 2 99999999999999999999999988888774321 111 245567
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc
Q 035612 298 KRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK 377 (534)
Q Consensus 298 ~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~ 377 (534)
+++.+++++++++|+.....+.++...|.+++.... ..+..++++..+++++. ++++|+|
T Consensus 249 ~~~~~~~~~~~~~~~l~~~i~~l~~~~w~~~~~~~~-----------~~~~~~ali~~~~~~~~---------~vl~~~~ 308 (461)
T COG0471 249 KRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGK-----------IDATLIALIPVALLLLA---------GVLTWKE 308 (461)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHHHHHHHH---------HHHhHHH
Confidence 788888999999999999999999999977665321 02345566555454444 4788955
Q ss_pred -ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 035612 378 -CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIA 455 (534)
Q Consensus 378 -~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la 455 (534)
.++++|+++++++|++.++++++++|..+|+++.+.. .++.++..+.+++++.+..+++|+||++++.++.|++..++
T Consensus 309 ~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~SntA~~~~m~Pi~~~ia 388 (461)
T COG0471 309 VYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNTATAIAMVPIAIALA 388 (461)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999875 55666777777889999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035612 456 KTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAY 525 (534)
Q Consensus 456 ~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~ 525 (534)
.++|.+|..+.+..+.+++++++||+++++|++++|.|+++++||+|.|+++++++.++.+.+.+.|+..
T Consensus 389 ~~l~~~p~~~~~~v~~~as~~~~tpv~~~~n~iv~g~G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~~ 458 (461)
T COG0471 389 SALGGAPLLLLMLVAVSASGGFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPV 458 (461)
T ss_pred HhcCCCchHHHHHHHHHHhhhhhcCCCCCCCceEECCCCccHHHHHHhccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999888888889999999999999999999999999999999999999999999999999888764
No 5
>PRK15445 arsenical pump membrane protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=387.56 Aligned_cols=408 Identities=17% Similarity=0.213 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHHHhhc--CChhhHHHHHHHHHHHhccCChHHHHh--hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 035612 71 MLGVLAWVFAWWLTEA--VPMPITSMAPLFLFPLFGISSADTVAH--SYMDDVIALVLGSFILALAVEHYNIHKRLALNI 146 (534)
Q Consensus 71 ~l~i~~~~i~~w~~~~--ip~~~~al~~~~l~~l~gi~~~~~v~~--~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i 146 (534)
++.+++.++++|++++ +|.+++++++..++.++|+.+++|+++ ++.|+++++++|+++++.+++|||+.||+++++
T Consensus 3 ~l~i~~~~~~~~~~~~~~ip~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~~ 82 (427)
T PRK15445 3 AIAIFLLTLVLVIWQPKGLGIGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAALHV 82 (427)
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5678888899999988 999999999999999999999999986 678999999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 147 TILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 147 ~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
.++.++ +++++...+++.++++|+++||+++++++.|++..+++++|.+|++ ..+.+++.+++++.++..
T Consensus 83 ~~~~~~---~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~-------~~~~~~~~~~~a~~~~~~ 152 (427)
T PRK15445 83 ARWAKG---NGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFSKKA-------TLAFVMAAGFIADTASLP 152 (427)
T ss_pred HHHhCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccc-------chHHHHHHHHHhcccccc
Confidence 999875 5778889999999999999999999999999999999999988731 135778888999999999
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCC
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGP 306 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 306 (534)
+++|+++|.+..+ ..+++|.||++++.|+.++.++..+.+.++++|++.++. .+ ++..+++.+.. +
T Consensus 153 ~~ig~~~N~i~~~--------~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~-~~----~~~~~~~~~~~-~ 218 (427)
T PRK15445 153 LVVSNLVNIVSAD--------YFGIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKT-YD----LELLKEPASAI-K 218 (427)
T ss_pred cccCCchHhhhhc--------cCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCcc-cc----cccccChhhhc-c
Confidence 9999999988663 458999999999999999999998888888887654321 11 11111111111 1
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchH
Q 035612 307 MAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNI 385 (534)
Q Consensus 307 ~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~ 385 (534)
-.+.++..+.++..++++|...+.++ .+...++++.+.++++.+. +.++++||| .+++||++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~------------i~~~~va~~~a~ll~~~~~-----~~~~~~~~~~~~~v~W~~ 281 (427)
T PRK15445 219 DPALFKLGWIVLALLLVGYFVLEPLG------------IPVSAIAGVGALILLLVAR-----RGHAINTKKVLKGAPWQI 281 (427)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcC------------CCHHHHHHHHHHHHHHHHh-----ccCCCCHHHHHHhCChHH
Confidence 12334445555555555655544322 1355677777766665532 235789988 58899999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHH
Q 035612 386 ILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLL 465 (534)
Q Consensus 386 i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~ 465 (534)
+++++|++.++++++++|+.+|+++.+....+.++......+.+++.++|+|+||+++++++ |+....+...|.+|..+
T Consensus 282 l~~~~g~~~l~~al~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~s~~lS~~~sN~p~~~~~-~~~i~~~~~~~~~~~~l 360 (427)
T PRK15445 282 VIFSLGMYLVVYGLRNAGLTDYLAGVLNYLADQGLFAATLGTGFLAAFLSSVMNNMPTVLIG-ALAIDGSNATGVIKEAM 360 (427)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHhccCCcchHHHH
Confidence 99999999999999999999999999977766666666778889999999999999999865 55555555667778888
Q ss_pred HHHHHHHHhhh-cccCCCCchhhHhhc---C-C-CCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 035612 466 MVPGAIGAQFS-FLLPTGTPSNIVGFT---T-G-HIEIQDMIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 466 ~l~~~~~~~~~-~~~P~~~~~n~i~~~---~-g-~~~~~~~~k~g~~~~ii~~ii~~~~~~ 520 (534)
+++++++++++ +.||+|+++|.++.+ . | +++++||.|.|++.+++.+++....+.
T Consensus 361 ~~al~~ga~~gg~~T~iGs~an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l~ 421 (427)
T PRK15445 361 IYANVIGSDLGPKITPIGSLATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLALA 421 (427)
T ss_pred HHHHHHhcccCcccchhhhHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 999999999997654 2 3 467999999999999999998877764
No 6
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=100.00 E-value=9.7e-45 Score=376.65 Aligned_cols=378 Identities=30% Similarity=0.484 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Q 035612 73 GVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCG 152 (534)
Q Consensus 73 ~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~ 152 (534)
+++++++++|++|++|.+++++....++.++|+.++||+++++.+++++++.|++.++.++++||+.||+++++.++.++
T Consensus 2 ~i~~~~i~~w~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~~~~~ 81 (382)
T cd01115 2 AILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLKRAGK 81 (382)
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHhCCCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccch
Q 035612 153 EPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTG 232 (534)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~ 232 (534)
+++++...+++.+.++|.++||+++++++.|++.+++++.|.+| +.+.+++.++++.|++++|+|++
T Consensus 82 ---~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~Pi~~~~~~~~g~~~----------~~~~l~~~~~~~~g~~~~p~g~~ 148 (382)
T cd01115 82 ---GERRLLLLLMLVTAFLSAFMSNTATVAIMLPVALGLAAKLDISP----------SRLLMPLAFAASIGGMLTLIGTP 148 (382)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCh----------hHHHHHHHHHHHhcccceecCCc
Confidence 56778889999999999999999999999999999999999887 56889999999999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHH
Q 035612 233 VNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEK 312 (534)
Q Consensus 233 ~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~ 312 (534)
+|.++.+.+++. +++++++.||+..+.|+.++.+++.++.
T Consensus 149 ~n~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------------------- 188 (382)
T cd01115 149 PNLVASGYLESL--GGQGFSFFEFTPIGLPLLIIGLLYLWFI-------------------------------------- 188 (382)
T ss_pred hHHHHHHHHHHc--cCCCcCHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence 999999999876 3567899999999999887665443322
Q ss_pred HHHHHHHHHHHHHhhccc-CCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchHHHHHH
Q 035612 313 MVLAVFGMLIALWMTRSI-TDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNIILLLG 390 (534)
Q Consensus 313 ~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~ 390 (534)
....++...+++|++.+. .+. .+....+.+.+.++.+. +..+||| .++++|+++++++
T Consensus 189 ~~~~~~~~~i~l~~~~~~~~~~-----------~~~~~~a~~~~~~l~~~---------~~~~~~~~~~~~~w~~l~~~~ 248 (382)
T cd01115 189 FRLAVLIITIVLLAALAAITGL-----------LPVSVAIAIGAIVLVFG---------GVLLTKEDYKSIDWGIIFLFA 248 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc-----------ccHHHHHHHHHHHHHHH---------ccCCHHHHHHcCCchHHHHHH
Confidence 112334455566665432 111 12334455544444433 4688888 4899999999999
Q ss_pred HHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 035612 391 AGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPG 469 (534)
Q Consensus 391 ~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~ 469 (534)
+++.++.+++++|+.||+++.+.+. ++.+++.....+++++.++++|+||++++.++.|++.+++++.|.||..+++..
T Consensus 249 ~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~ 328 (382)
T cd01115 249 GGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLLCLLTLVLTNFISNTATAVLLAPIALSIALSLGLPPEALLLAV 328 (382)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999999999999763 444666666788899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 470 AIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 470 ~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+++++.++++|+++++|.++++.++++++||+|.++|..++++++.....++|+
T Consensus 329 ~~~~~~~~~tp~~~~~n~i~~~~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~ 382 (382)
T cd01115 329 AIGASCAFMLPVGTPPNAIVLGPGGYKFSDFAKVGLPLSILSLVVSVTMIPLIW 382 (382)
T ss_pred HHHHHHHHcCccCCCCCeeeeCCCCccHHHHHHhCHHHHHHHHHHHHHHHHHHC
Confidence 999988999999999999999999999999999999999999999888887763
No 7
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=100.00 E-value=6.4e-45 Score=383.02 Aligned_cols=406 Identities=17% Similarity=0.202 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHHHHhhcCChhhH--HHHHHHHHHHhccCChHHHH--hhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 035612 70 NMLGVLAWVFAWWLTEAVPMPIT--SMAPLFLFPLFGISSADTVA--HSYMDDVIALVLGSFILALAVEHYNIHKRLALN 145 (534)
Q Consensus 70 ~~l~i~~~~i~~w~~~~ip~~~~--al~~~~l~~l~gi~~~~~v~--~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~ 145 (534)
.++.+++.++++|++|++|...+ +++...++.++|+.+++|+. .++.|+++++++|+++++.+++|||+.||++++
T Consensus 3 ~~l~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~ia~~ 82 (429)
T TIGR00935 3 LAGAIFLLTYVLVIWQPVGLTIGASASSGAALAILAGVVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEWAAVH 82 (429)
T ss_pred HHHHHHHHHHHHHHheecchHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36788999999999999855554 44555777889999998874 368999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccc
Q 035612 146 ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGM 225 (534)
Q Consensus 146 i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~ 225 (534)
+.++.|+ +++++.+.++..++++|++++|+++++++.|++..++++.|.+|+ ...+.+++++++||.
T Consensus 83 l~~~~~~---~~~~l~~~~~~~~~~ls~~~~n~~~~~i~~Pi~~~l~~~~~~~~~----------~~~~~~~~~a~~gg~ 149 (429)
T TIGR00935 83 AYRLSNG---RGWLLFTFICLLGAVVSAFFANDGAALILTPIVIAMCEVLGFNPR----------TILAFVVAAGFIADT 149 (429)
T ss_pred HHHHhCC---ChHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHhCCCCc----------chHHHHHHHHHHhhH
Confidence 9998875 578899999999999999999999999999999999999998873 245788999999999
Q ss_pred cccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcC
Q 035612 226 STLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLG 305 (534)
Q Consensus 226 ~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 305 (534)
+||+|+++|++..+..+ ..+++|.||++++.|++++.+++.+++.++.+|++.++.. + .+. +.++.+
T Consensus 150 ~t~iG~~~n~i~~~~~~-----~~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~~~ 216 (429)
T TIGR00935 150 ASLPLIVSNLVNIVSAD-----YFGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVY-D----LEL---LLAPKY 216 (429)
T ss_pred HhcCCCCchhhhhhccc-----ccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCccc-c----hhh---ccCccc
Confidence 99999999999876432 2479999999999999999998888877777776543211 1 111 111122
Q ss_pred CCchhH--HHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc-cCCC
Q 035612 306 PMAFAE--KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-KKLP 382 (534)
Q Consensus 306 ~~~~~e--~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~~v~ 382 (534)
+.+.++ +..+.+++.++++|.+++.++. +...++...+.++++++. ..++.+|||. ++++
T Consensus 217 ~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~------------~~~~~a~~~~~~~~~l~~-----~~~~~~~~~~~~~i~ 279 (429)
T TIGR00935 217 AIKDPALFKKCWIVLVFLLVGFFVLEFLGI------------PVSAIAWIAALGAIALAI-----LADAIDTEKVLRGAP 279 (429)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhccccC------------chHHHHHHHHHHHHHHHH-----hcCCCCHHHHHHhCC
Confidence 333333 4567777888888988765431 122233333323222210 1257899985 7899
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH--cCC
Q 035612 383 WNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKT--MHV 460 (534)
Q Consensus 383 w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~--~g~ 460 (534)
|+++++++|+++++++++++|+.+|+++.+...++.++......+.+++.++|+++||++ ++.|++.+++.+ .|.
T Consensus 280 w~~l~~~~g~f~l~~~l~~tG~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~ 356 (429)
T TIGR00935 280 WQIVLFSAGMYLVVEGLKNLGLTEYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP---TMLVGALSIDQSSATGL 356 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHhhcccccc
Confidence 999999999999999999999999999966556666666666678888999999999999 479999999864 588
Q ss_pred ChHHHHHHHHHHHhhh-cccCCCCchhhHhhc----CCC-CCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 461 HPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT----TGH-IEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 461 ~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~----~g~-~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
||..+++++.++++.+ ++||+|+++|.++++ .|+ ++++||+|.|+|.+++..++....+..
T Consensus 357 ~~~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~~ 423 (429)
T TIGR00935 357 PKEPMVYANVIGADLGPKITPIGSLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLLL 423 (429)
T ss_pred chhHHHHHHHHHHhcCcccCccccHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 999999999999776 454 789999999999999999988777754
No 8
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=100.00 E-value=1.1e-44 Score=379.92 Aligned_cols=397 Identities=20% Similarity=0.321 Sum_probs=330.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHhccCC----hHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Q 035612 75 LAWVFAWWLTEAVPMPITSMAPLFLFPLFGISS----ADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILF 150 (534)
Q Consensus 75 ~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~----~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~ 150 (534)
+++++++|++|++|.++++++...++.++|+.+ .+++++++.|++++++++.+.++.+++++|+.||+++++.++.
T Consensus 1 ~~~~~~~~~~~~~p~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~~~~~ 80 (413)
T cd01116 1 FIITYALIIFEKVHRTVAALAGALWLVILGLATLSPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWAVKIS 80 (413)
T ss_pred ChHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999 9999999999999999999999999999999999999999887
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccccccc
Q 035612 151 CGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTG 230 (534)
Q Consensus 151 g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g 230 (534)
++ +++++...+++++.++|.+.||+++.+++.|++.+++++.|.+| +.+++++.+++++|+..+|+|
T Consensus 81 ~~---~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~pi~~~i~~~~g~~~----------~~~~~~~~~~a~~g~~~tp~g 147 (413)
T cd01116 81 KG---RPWRLLLLLGLLTAFLSAFLDNVTTVLLMVPVTIRLCEVLGLNP----------VPVLISEVIAANIGGAATLIG 147 (413)
T ss_pred CC---ChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCC----------ccHHHHHHHHHHccchhhccC
Confidence 75 46678889999999999999999999999999999999999987 458889999999999999999
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchh
Q 035612 231 TGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFA 310 (534)
Q Consensus 231 ~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 310 (534)
+++|.++.+ +.++++.||+++++|..++.++..++..++.+|+++++. ++ +++. .+|.++.++.+++
T Consensus 148 ~~~n~~~~~--------~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~ 214 (413)
T cd01116 148 DPPNIMIGS--------AAGLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILKAR--EE--DVLA-LAELEPKYPIKDK 214 (413)
T ss_pred Cchhhhhhc--------cCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--ch--hHHH-hhccccccccCcH
Confidence 999998773 568999999999999999998888887777777654321 11 1111 1233444444444
Q ss_pred H--HHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc-cCCCchHHH
Q 035612 311 E--KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-KKLPWNIIL 387 (534)
Q Consensus 311 e--~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~~v~w~~i~ 387 (534)
+ +..+.++..++..|.+++..+ .+.+.++++.+.+++.... .++|||. ++++|++++
T Consensus 215 ~~~~~~~~i~~~~v~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~i~w~~l~ 274 (413)
T cd01116 215 VLLLKSLTILTLVIIGFVLHSPLG------------VSLGWIALLGALLLLLLAD--------KLDFEDVLSRVEWDTLL 274 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC------------CCHHHHHHHHHHHHHHHcC--------CCCHHHHHHhCCCcHHH
Confidence 3 345666777777888865422 1345566666666555421 2588884 789999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 035612 388 LLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMV 467 (534)
Q Consensus 388 l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l 467 (534)
+++|++.++.+++++|+.|++++.+.+..+.++......+++++.++++|.||++++.++.|+..+++++.|.||..+++
T Consensus 275 ~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~ 354 (413)
T cd01116 275 FFAGLFVLVGGLEELGIIEWIAELLVGVILGRIAVAVILILWISALLSAFIDNIPVTATMIPIVKDLASQLGIPLLPLWW 354 (413)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 99999999999999999999999997654444444445777899999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-cccCCCCchhhHhhcCC-----CCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 468 PGAIGAQFS-FLLPTGTPSNIVGFTTG-----HIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 468 ~~~~~~~~~-~~~P~~~~~n~i~~~~g-----~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
+.+++++.+ +++|+|+++|.++++.+ +++++||+|.|.+..++..++..+
T Consensus 355 ~~~~~a~~g~~~tp~gs~~n~i~~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~~~ 410 (413)
T cd01116 355 ALALGACLGGNGTLIGASANVVAAGIAEQHGYKISFWEFLKVGFPIMLVSLILATV 410 (413)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999995 99999999999998642 489999999999999987766554
No 9
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=100.00 E-value=3.6e-44 Score=375.98 Aligned_cols=399 Identities=16% Similarity=0.216 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHHHhhc--CChhhHHHHHHHHHHHhccCChHHHHhhhc--chHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 035612 71 MLGVLAWVFAWWLTEA--VPMPITSMAPLFLFPLFGISSADTVAHSYM--DDVIALVLGSFILALAVEHYNIHKRLALNI 146 (534)
Q Consensus 71 ~l~i~~~~i~~w~~~~--ip~~~~al~~~~l~~l~gi~~~~~v~~~~~--~~~i~li~g~~~l~~~l~~tGl~~ria~~i 146 (534)
++.++++++++|++|. +|.++++++...++.++|++++||+++++. |++++++.|++.++.++++||+.||+++++
T Consensus 2 ~l~i~~~~i~l~~~~~~~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l 81 (416)
T cd01118 2 AIAIFVLTLVLVIWRPFGLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALA 81 (416)
T ss_pred HHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5678889999999994 899999999999999999999999999864 899999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 147 TILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 147 ~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
.++.++ +++++...++..+.++|+++||+++++++.|++..++++.|.+|++ .+.+++..+++++.|+..
T Consensus 82 ~~~~~~---~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~-------~~~~l~~~~~~a~~g~~~ 151 (416)
T cd01118 82 ARWARG---SGRKLFTLIVLLGAAVTAFFANDGTALILTPIVIALLRALGAKKNR-------TLPFLYACAFIADAASLP 151 (416)
T ss_pred HHHhCC---ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccc-------ccHHHHHHHHHHcccccc
Confidence 998775 5788889999999999999999999999999999999999988721 134677888999999999
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCC
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGP 306 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 306 (534)
+|+|+++|.+..+ ..+++|.||+++++|+.++.+++.+.+.+++||++.++. . +++..+++ +
T Consensus 152 tpig~~~n~i~~~--------~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~-----~ 213 (416)
T cd01118 152 LPISNLVNIVTAG--------YFGIGFTEYAALMFLPSIVSILATYVVLYLFFRRALPKR--L---ETASVKKP-----S 213 (416)
T ss_pred cccCCchHHHhHh--------ccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc--c---ccccccCc-----c
Confidence 9999999998774 458999999999999999999988888887777654221 1 01000111 1
Q ss_pred CchhHH----HHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCC
Q 035612 307 MAFAEK----MVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKL 381 (534)
Q Consensus 307 ~~~~e~----~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v 381 (534)
.+.+|| ..+.++...+..+...+..+. .+..++.+.+++++++++ .++.++||| .+++
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~v 276 (416)
T cd01118 214 LAIKDPLLFGLAWTLLVLLVVSAFGVDILLI------------PPSFIAGVLALIFLLLAR-----RGGAINPLKVLKEA 276 (416)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccccc------------cHHHHHHHHHHHHHHHHc-----CCCCCCHHHHHHhC
Confidence 111222 222333333344544332221 123344444444444443 124678988 4789
Q ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCC
Q 035612 382 PWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVH 461 (534)
Q Consensus 382 ~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~ 461 (534)
||+++++++|.++++++++++|+.+|+++.+.+..+.++.....++.+++.++|||+||.+++.++.|++.+ +.|
T Consensus 277 ~w~~ll~f~g~f~l~~al~~tG~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~-----~~~ 351 (416)
T cd01118 277 PWGVLLFSLGLYVVVFGLKNAGLTAILADLLNWLVSQGLLAAILGVGLLAAFLSNVMNNLPAVLIGALALAA-----GHA 351 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc-----ccc
Confidence 999999999999999999999999999999987555555555557788999999999999999999998876 577
Q ss_pred hHHHHHHHHHHHhhh-cccCCCCchhhHhhc----C-CCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 035612 462 PLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT----T-GHIEIQDMIKTGLPLKIAGIAAMAFLM 519 (534)
Q Consensus 462 p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~----~-g~~~~~~~~k~g~~~~ii~~ii~~~~~ 519 (534)
|...++++.++++.| ++||+|+++|.++++ . ++++++||.|.|++.+++++++....+
T Consensus 352 ~~~~~~~l~~g~~~gg~~t~~gs~an~i~~~~~~~~~~~~~~~~f~k~g~~~~~~~l~~~~~~l 415 (416)
T cd01118 352 PEALVYANLIGVDLGPKLTPIGSLATLLWLHVLRRKGIRVSWGYYLKVGLIVTPPVLVVTLAAL 415 (416)
T ss_pred cHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877888899999995 999999999999764 3 479999999999999999988876543
No 10
>PLN00136 silicon transporter; Provisional
Probab=100.00 E-value=1.3e-39 Score=342.02 Aligned_cols=385 Identities=15% Similarity=0.157 Sum_probs=299.7
Q ss_pred ChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 035612 88 PMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGT 167 (534)
Q Consensus 88 p~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~ 167 (534)
+....++++.+++.++|+.+++|+++.+.++++++++|+++++.+++++|+.|+++.++.++.+ +++++.+.++.+
T Consensus 34 ~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~----~~~~ll~~l~~~ 109 (482)
T PLN00136 34 GRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQ----GGRDLLCRVCVV 109 (482)
T ss_pred cHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC----ChHHHHHHHHHH
Confidence 3556688888888999999999999999999999999999999999999999999999997643 466778889999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCC
Q 035612 168 TAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPE 247 (534)
Q Consensus 168 ~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~ 247 (534)
++++|++++|+++++++.|++..++++.|.+| +++++++++++|+||..||+|+|+|+++.+
T Consensus 110 ta~lSafl~N~~t~llm~Piv~~la~~~~~~p----------~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~-------- 171 (482)
T PLN00136 110 TALASALFTNDTCCVVLTEFVLELAAERNLPA----------KPFLLALASSANIGSSATPIGNPQNLVIAF-------- 171 (482)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHhhhhhhccccchheeeC--------
Confidence 99999999999999999999999999999988 579999999999999999999999999873
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhh--hHHHHH---------------------------
Q 035612 248 ANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYL--DKANLK--------------------------- 298 (534)
Q Consensus 248 ~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------- 298 (534)
..+++|.||++++.|+.++.+++.+.+++++||++.+.+..+++. +.+..+
T Consensus 172 ~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (482)
T PLN00136 172 NSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSPASAKSTKQQSPALLQAGLNGDG 251 (482)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhhhhhcccccchhhhhhhhhhhhhhccccccc
Confidence 568999999999999999999888888888887754211000000 000000
Q ss_pred ----HHHhhcCCCc---------hhHHHHH----H--HHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHH
Q 035612 299 ----RELDMLGPMA---------FAEKMVL----A--VFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIV 359 (534)
Q Consensus 299 ----~~~~~lg~~~---------~~e~~~l----~--~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~ 359 (534)
++..+.++.+ .+.+..+ . ++..+++..+ .+ .+.+.+++++++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~~~l~~f~----~g------------~p~~~iAl~~a~~ll 315 (482)
T PLN00136 252 NGDMSSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAYM----VG------------LNMSWTAITTAIALV 315 (482)
T ss_pred cchhHHHhhccccccccccccchhccHHHHHHHHHHHHHHHHHHHHH----cC------------CCHHHHHHHHHHHHH
Confidence 0000111100 0112111 1 2222222222 12 245678888776665
Q ss_pred hccCccccccCccccccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhc
Q 035612 360 VHNSEHEAKGEKLMDWNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFT 438 (534)
Q Consensus 360 ~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~ 438 (534)
+.. ..+.++ .++++|+++++++|+|.++.+++++|+.+++++.+....+.+.....+.+.+++.++|+++
T Consensus 316 l~~---------~~~~~~~l~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~~~~~~~~~~~s~~lS~~i 386 (482)
T PLN00136 316 VVD---------FRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVIILLLSNLA 386 (482)
T ss_pred Hhc---------CCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Confidence 542 245555 5899999999999999999999999999999999987766666666667888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhhh-cccCCCCchhhHhhcC-------C-CCCHHHHHHHhHHHH
Q 035612 439 SNNATTTLVLPLLIQIAKTMHVH-PLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTT-------G-HIEIQDMIKTGLPLK 508 (534)
Q Consensus 439 Sn~a~~~il~Pi~~~la~~~g~~-p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~-------g-~~~~~~~~k~g~~~~ 508 (534)
||+++++++.|++...+...+.+ +...++..+++++.| +.||+|+++|.++.+. | ++++.||+|.|+|++
T Consensus 387 sNvp~~~~m~p~v~~~~~~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~~G~~isf~~f~k~G~P~~ 466 (482)
T PLN00136 387 SNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPST 466 (482)
T ss_pred ccHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhccCCcccHHHHHHHhHHHH
Confidence 99999999999998765444422 234566688888886 9999999999998763 4 699999999999999
Q ss_pred HHHHHHHHHHH
Q 035612 509 IAGIAAMAFLM 519 (534)
Q Consensus 509 ii~~ii~~~~~ 519 (534)
++++++...++
T Consensus 467 l~~~~i~~~~~ 477 (482)
T PLN00136 467 LIVTAIGIPLI 477 (482)
T ss_pred HHHHHHHHHHH
Confidence 99988886655
No 11
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=100.00 E-value=2.5e-41 Score=352.76 Aligned_cols=386 Identities=24% Similarity=0.351 Sum_probs=304.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhH
Q 035612 80 AWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPL 159 (534)
Q Consensus 80 ~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~ 159 (534)
++|++|++|.++++++...++.++|+.++||+++++.|++++++.|++.++.+++++|+.||+++++.++.++ +++.
T Consensus 2 ilw~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~---~~~~ 78 (396)
T cd00625 2 VLIRPEKLPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKG---SRRL 78 (396)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCC---CchH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999887664 3444
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHH
Q 035612 160 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVG 239 (534)
Q Consensus 160 l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~ 239 (534)
...++..+.++|.++||+++++++.|++.+++++.|.++. +.+++++.++++.|+..+|+|+++|.++.+
T Consensus 79 -~~~~~~~~~~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~---------~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~ 148 (396)
T cd00625 79 -LLLLMLLTAALSAFFSNDATAVLLTPIVLALLRKLGLSPP---------VPLLLALAFAANIGGAATPIGNPPNLIIAS 148 (396)
T ss_pred -HHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHhCCCCC---------ccHHHHHHHHHhccccccccCCCCceEEEe
Confidence 5677788899999999999999999999999999998761 358889999999999999999999998874
Q ss_pred HHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHH
Q 035612 240 MWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFG 319 (534)
Q Consensus 240 ~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~ 319 (534)
..++++.||++++.|..++..+..+.+.++++|+++++++.. +++..+++.++.++.+++|+..+..+.
T Consensus 149 --------~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (396)
T cd00625 149 --------LSGLGFLDFLAFMAPPALGLLLLLLGLLYLLFRKKLLLPDED---KLTVLAEPLPARPLLKKFLLLALLLLL 217 (396)
T ss_pred --------CCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhh---hhhhhhccChhcccccHHHHHHHHHHH
Confidence 457999999999999999998888888888887765322111 111123455566677777776666555
Q ss_pred HHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchHHHHHHHHHHHHHH
Q 035612 320 MLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNIILLLGAGFAIADG 398 (534)
Q Consensus 320 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~~~~~l~~~ 398 (534)
+++..|... . +.+.++...++.++++.. ..++||| .++++|++++++++++.++.+
T Consensus 218 ~~~~~~~~~-~---------------~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~i~w~~~~~~~~~~~l~~~ 274 (396)
T cd00625 218 LFVLLFFFL-I---------------PLGLIALLGALLLLLLLV-------RGLDPEEVLKSVDWGTLLFFAGLFVLVGA 274 (396)
T ss_pred HHHHHHHHH-H---------------hHHHHHHHHHHHHHHHhc-------CCCCHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 555555432 1 122344444443344332 2378888 478999999999999999999
Q ss_pred HHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-c
Q 035612 399 VRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-F 477 (534)
Q Consensus 399 l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~ 477 (534)
++++|..+|+++.+.+..+.+++.....+.+++.++++|+||++++.++.|++.+++ ++.........+++.+ .
T Consensus 275 l~~~G~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~n~~~~~~~~Pi~~~~~-----~~~~~~~~~~~~~~~~~~ 349 (396)
T cd00625 275 LESTGLLEWLAELLVALVGLPPLAALLLIGLLSALLSNFISNVPTVALLLPIAASLA-----PPEPAWLALALGSTLGGN 349 (396)
T ss_pred HHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-----CchHHHHHHHHHhccccc
Confidence 999999999999998654455566666888899999999999999999999999875 3333333444444443 6
Q ss_pred ccCCCCchhhHhhcCC-----CCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 478 LLPTGTPSNIVGFTTG-----HIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 478 ~~P~~~~~n~i~~~~g-----~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
++|.++.+|.+.++.. +++++||+|.|++.+++..++...
T Consensus 350 ~~~~~s~a~~l~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~~ 394 (396)
T cd00625 350 LTLIGSLANLIPLGAAENAGVGISFGEFLKVGLPLTLLSLVVSLL 394 (396)
T ss_pred ccccccHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766642 689999999999999988877654
No 12
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=100.00 E-value=8.6e-40 Score=339.55 Aligned_cols=365 Identities=20% Similarity=0.269 Sum_probs=289.5
Q ss_pred cCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 035612 86 AVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGIC 165 (534)
Q Consensus 86 ~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~ 165 (534)
+.|.++++++...++.++|+.+++|+++++.|+++++++|+++++.+++++|+.||+++++.++.+ +++++.+.++
T Consensus 10 ~~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~----~~~~l~~~~~ 85 (384)
T cd01117 10 RLDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAG----SPRRLLFLLV 85 (384)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcC----CHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999988743 4677888999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhC
Q 035612 166 GTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYF 245 (534)
Q Consensus 166 ~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~ 245 (534)
+.++++|++++|+++++++.|++.+++++.|.+| +.+++.+++++|+||..||+|+++|.++.+
T Consensus 86 ~~~~~ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~----------~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~------ 149 (384)
T cd01117 86 LLSGILSALLTNDTACLVFTPIVLELARVAGLPP----------IPLLLALATAANIGSAATPIGNPQNLLIAS------ 149 (384)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCc----------hhHHHHHHHHHHcccccccCCCchhhhhhc------
Confidence 9999999999999999999999999999999887 568889999999999999999999998773
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHH-HHHHHHHHHHH
Q 035612 246 PEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKM-VLAVFGMLIAL 324 (534)
Q Consensus 246 ~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~-~l~~~~~~i~l 324 (534)
..+++|.||+++++|+.++.+++.+++.+++||++.++.+ + .++ .++.++.+++|+. ....++.+++.
T Consensus 150 --~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~--~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
T cd01117 150 --ESGISFPFFLAAMAPLALLGLLLLLILLLVLFPGELKGLP--L--DKA-----TKEEGVGARKLAVKLLVLILLLLVA 218 (384)
T ss_pred --CCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc--c--ccc-----cchhhcccHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999988888887777766542211 1 111 1234455555544 33444334444
Q ss_pred HhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchHHHHHHHHHHHHHHHHHhC
Q 035612 325 WMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNIILLLGAGFAIADGVRTSG 403 (534)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG 403 (534)
|.... +. .+...+.+.+..++++. + .+||| .+++||+++++++|+++++++++++|
T Consensus 219 ~~~~~--~~------------~~~~~~~~~~~~ll~~~--------~-~~~~~~l~~i~w~~ll~f~g~f~l~~~l~~~g 275 (384)
T cd01117 219 FLALL--GV------------IPLWTAALVAAVLLLLT--------R-LKPRRVLKKVDWGLLLFFAGLFILVGGFAQGL 275 (384)
T ss_pred HHHHh--Cc------------cHHHHHHHHHHHHHHHh--------c-CCHHHHHHhCCchHHHHHHHHHHHHHHHHHhH
Confidence 44321 10 12233333333444332 3 67777 58999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCC
Q 035612 404 LADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTG 482 (534)
Q Consensus 404 ~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~ 482 (534)
..+++++.+... .....+.+++.++|+|+||++++.++.|+.... ++. .++.++++++.+ ++||+|
T Consensus 276 ~~~~~~~~~~~~------~~~~~~~~~~~~lS~~isN~p~~~~~~pi~~~~------~~~-~~~~l~~~~~~gg~~tpig 342 (384)
T cd01117 276 PLEGLSRLLPLL------DSVLSLFLVSIGLSQLISNVPAVLLLLPFLPSA------DEK-DWLLLAAGSTIAGNLTLLG 342 (384)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------ccH-HHHHHHHHhhcccccchhh
Confidence 999999877541 112356788999999999999999999998655 222 245667888884 999999
Q ss_pred CchhhHhhcCC-----CCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 483 TPSNIVGFTTG-----HIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 483 ~~~n~i~~~~g-----~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
+++|.++++.+ +++++||+|.|++.+++.+++..+
T Consensus 343 s~an~i~~~~~~~~g~~~~~~~~~k~g~~~~i~~~~~~~~ 382 (384)
T cd01117 343 SAANLIVAEAAERRGVRLSFGEFLKYGVPLTLLTAAIGIL 382 (384)
T ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999864 789999999999999887776543
No 13
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=316.95 Aligned_cols=407 Identities=19% Similarity=0.293 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh--hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 035612 69 RNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH--SYMDDVIALVLGSFILALAVEHYNIHKRLALNI 146 (534)
Q Consensus 69 ~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~--~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i 146 (534)
...+.++..+.+.|..+++|.++.++.+..+...+|+++++|+.. .-.++++++++|++++...++++|+.|+.|.++
T Consensus 6 ~~~l~~~~l~~~~~~p~~~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~ 85 (424)
T COG1055 6 ALALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKM 85 (424)
T ss_pred HHHHHHHHHHHHhhhcCcCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445667788888999999999999999999999999999999998 577899999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 147 TILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 147 ~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
.++.++ +++++.+.+.+.++++|++.+|+.++.++.|++..++|+.|.++ .++++...+++|+||..
T Consensus 86 v~~s~g---~~~~L~~~l~ll~a~~SA~l~N~tt~LlltPivl~~~~~~~~~~----------~p~l~~~~f~aN~gg~~ 152 (424)
T COG1055 86 VKRSKG---SGLKLLLLLVLLGALLSAFLDNDTTALLLTPIVLAVARALGVNP----------VPFLIAEVFIANIGGLA 152 (424)
T ss_pred HHHhcC---CcchHHHHHHHHHHHHHHHHcccceeehhhhHHHHHHHHcCCCc----------cHHHHHHHHHHcccccc
Confidence 999876 57789999999999999999999999999999999999999987 67999999999999999
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCC
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGP 306 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 306 (534)
||+|+|+|++... ..+++|.||.....|+.+++++....+.+++||+|. .++.. +.+..+++ ...
T Consensus 153 t~iGdp~niii~~--------~~gisF~~f~~~m~~p~l~~li~~~~vl~~~~~~~~-~~~~~---~~~~~~~~---~~a 217 (424)
T COG1055 153 TPVGDPPNIIIAS--------AAGISFNDFLANMFPPSLISLIATLVVLYLLFRRKV-IPERY---DDLLLLDP---REA 217 (424)
T ss_pred cccCChHHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccc---hhhcccCh---hcc
Confidence 9999999999884 567999999999999999999999888888886222 11111 11101111 011
Q ss_pred Cchh--HHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccc-ccccCCCc
Q 035612 307 MAFA--EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDW-NKCKKLPW 383 (534)
Q Consensus 307 ~~~~--e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~-~~~~~v~w 383 (534)
...+ -+....++..+.+.....++.+ .+.+.+++..+.++.++..+ ++..+- +-.++++|
T Consensus 218 i~~~~l~~~~~~vl~~vli~f~~~~~~~------------i~~~~val~~a~ill~~~~~-----~~~~~~~~il~~v~W 280 (424)
T COG1055 218 IRDRALFKLSLVVLALVLIAFLLLPFLG------------IPVSLVALVGAAILLLLARL-----SPRESVNKILRGVEW 280 (424)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccC------------CCHHHHHHHHHHHHHHHhcc-----CcchhHHHhhhcCCh
Confidence 1111 1334445555555555555433 13566777777777666431 111112 22489999
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChH
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPL 463 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~ 463 (534)
++++++.|.|...++++++|+.+.+++.+....+.+...-.....+++.++|++++|.++..++.|+........+.+ .
T Consensus 281 ~~l~Ff~Glfi~V~gl~~~Gv~~~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~~~~~-~ 359 (424)
T COG1055 281 STLLFFIGLFIVVGGLENAGVTEDLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVPTVLTFAPIIKGLAANGMGK-E 359 (424)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccccch-H
Confidence 999999999999999999999999999998776544444445788999999999999999999999998777654433 5
Q ss_pred HHHHHHHHHHhhh-cccCCCCchhhHhhcC----C-CCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 464 LLMVPGAIGAQFS-FLLPTGTPSNIVGFTT----G-HIEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 464 ~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~----g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
..+++.++++++| +.||+|+.+|.++.+. | ++++.||+|.|.+.++..+++....+++
T Consensus 360 ~lw~A~a~Ga~lGgnlT~IGs~Anlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~~l~~ 423 (424)
T COG1055 360 PLWLALALGADLGGNLTPIGSAANLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLLYLYL 423 (424)
T ss_pred HHHHHHHHhCccccchhhhhhHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888999996 9999999999999873 4 8999999999999999999888776654
No 14
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=100.00 E-value=6.9e-34 Score=292.26 Aligned_cols=413 Identities=15% Similarity=0.164 Sum_probs=292.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 035612 65 QATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLAL 144 (534)
Q Consensus 65 ~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~ 144 (534)
-..+|....=|+++.. ...++.|+..-.++++-. .++|+.+++|+++++.+|...+++..++++.+++++|+.++++.
T Consensus 42 ~~a~~~l~~~~i~~l~-~~~~~~pl~~~~~~a~~a-v~~Gv~s~~~a~~~f~~n~~vIlLL~fMVv~i~~~~gll~~v~~ 119 (513)
T PRK09547 42 FVAGWLLVAEFIFTLA-MALKCYPLQPGGLLAIEA-VFIGMTSPEHVYHEIAANLEVLLLLMFMVAGIYFMKQLLLFIFT 119 (513)
T ss_pred HHHHHHHHHHHHHHHH-HHHhccCCCchHHHHHHH-HHHCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3456654442333332 245666766666666555 68899999999999977755555566779999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------------hCCCCC---cch
Q 035612 145 NITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ-------------------NLPEVP---LQS 202 (534)
Q Consensus 145 ~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~-------------------~~g~~~---~~~ 202 (534)
+++++.+ +++++.+.+++.++++|+|++|+++++++.|++..+.+ +.+.++ ++-
T Consensus 120 kil~~~~----s~~~Lll~~~l~aA~LSAFLdN~Tvvav~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~ 195 (513)
T PRK09547 120 KLLLSIR----SKMLLSLAFCLAAAFLSAFLDALTVIAVVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDL 195 (513)
T ss_pred HHHHhcC----CHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhh
Confidence 9999865 57889999999999999999999999999999996522 222221 111
Q ss_pred hhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--hc
Q 035612 203 TLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLF--YC 280 (534)
Q Consensus 203 ~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~--~~ 280 (534)
++++.+-+.+++..++++|+||.+|++|+|+|+++.+ ..+++|.+|+....|+++..++....++... ++
T Consensus 196 ~~p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas--------~~g~~F~~F~~~~apv~lpvli~gll~~~l~~~~~ 267 (513)
T PRK09547 196 EQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAK--------QAGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFR 267 (513)
T ss_pred cccchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHH--------hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 1245566778899999999999999999999999985 2367899998887777776655554444211 11
Q ss_pred CCCCCCcchhhhhHHHHHHHHhhcC-CCchhHHH-----HHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHH
Q 035612 281 SRGSGPALSEYLDKANLKRELDMLG-PMAFAEKM-----VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSC 354 (534)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~e~~-----~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~ 354 (534)
.-..++++++.. ++..++..++.+ +.+.+++. .+.++. ++++... +.+.+++++
T Consensus 268 ~f~y~~~l~~~~-~~~l~~~~~~~~~~~~~~d~~~L~~~~l~~~~-li~~f~l------------------~~a~VaLig 327 (513)
T PRK09547 268 WFGYGAKLPEKV-RQVLQDYDDQERAKRTRQDKAKLIVQALIGVW-LIVALAL------------------HLAEVGLIG 327 (513)
T ss_pred EEeeccccchhH-HHHhhhhhhccCcccccccHHHHHHHHHHHHH-HHHHHHH------------------hHHHHHHHH
Confidence 111111122211 110111000111 11122222 223333 3333331 346788887
Q ss_pred HHHHHhccCccccccCccccccc-ccC-----CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHH
Q 035612 355 DGNIVVHNSEHEAKGEKLMDWNK-CKK-----LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVC 428 (534)
Q Consensus 355 ~~ll~~l~~~~~~~~~~~l~~~~-~~~-----v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~ 428 (534)
+.++.+.... ...+.|+ .++ ++|.++ +.|.|++.++++++|+.+.+++.+....+.+. ..++.
T Consensus 328 a~vill~~~~------~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~---~~~~~ 396 (513)
T PRK09547 328 LSVIILATAF------TGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ---LSLFY 396 (513)
T ss_pred HHHHHHhhcc------cCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh---HHHHH
Confidence 7666655310 0122333 455 999999 99999999999999999999999987765444 34677
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHcCC-Ch---HHHHHHHHHHHhhh-cccCCCCchhhHhh-c---CC-CCCHH
Q 035612 429 LISAIITEFTSNNATTTLVLPLLIQIAKTMHV-HP---LLLMVPGAIGAQFS-FLLPTGTPSNIVGF-T---TG-HIEIQ 498 (534)
Q Consensus 429 ~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~-~p---~~~~l~~~~~~~~~-~~~P~~~~~n~i~~-~---~g-~~~~~ 498 (534)
+.+.++|++.+|.+.++++.|++..++ ..|. ++ ..++.+++.+++.+ +.||.|..+|.++. + .| +++++
T Consensus 397 ~~sgllSaiiDNVp~~~~~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~isf~ 475 (513)
T PRK09547 397 IANGLLSSISDNVFVGTVYINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYG 475 (513)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCcccHH
Confidence 899999999999999999999999988 6676 33 46778889999995 99999999999988 4 35 89999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 499 DMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 499 ~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
||+|.|+|++++..++..+.+.++-
T Consensus 476 ~~~k~glP~tlv~~~v~~~~v~~~~ 500 (513)
T PRK09547 476 RMVWMALPYTIVLTLVGLLAVEFTL 500 (513)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887776643
No 15
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=100.00 E-value=1.1e-32 Score=275.46 Aligned_cols=421 Identities=16% Similarity=0.198 Sum_probs=297.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 035612 65 QATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLAL 144 (534)
Q Consensus 65 ~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~ 144 (534)
-..+|....=|+++..+ ..++.|+....++++=.. ++|+.++++++++|.++.+++++++|+++.+++++|+++|++.
T Consensus 42 ~~~gw~l~~efiftlam-alkcypl~pgglla~ea~-~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~t 119 (515)
T TIGR00774 42 FVAGWLLVAEFIFTLAM-ALKCYPLQPGGLLAIEAI-AIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFT 119 (515)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCCCCCCcHHHHHHH-HHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788777777776654 678888877777766544 5699999999999999999999999999999999999999995
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------------HHhCCCCCcch---------h
Q 035612 145 NITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGI------------LQNLPEVPLQS---------T 203 (534)
Q Consensus 145 ~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i------------~~~~g~~~~~~---------~ 203 (534)
+++.+.| ++..+.++++++++++|+|+||++++++++|++.++ +++.+.++++. +
T Consensus 120 klll~i~----Sk~~L~l~f~laaafLSaFLsnttvtAvmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~ 195 (515)
T TIGR00774 120 KLLLGIR----SKTLLSLAFCFAAAFLSAFLDALTVVAVVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLE 195 (515)
T ss_pred HHHHhCC----cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHH
Confidence 5555555 467899999999999999999999999999999999 66666555431 1
Q ss_pred hhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 035612 204 LVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPIS--FSTWFCFGFPLALVIFVALWAILCLFYCS 281 (534)
Q Consensus 204 ~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is--~~~~~~~~~p~~li~~~~~~~~~~~~~~~ 281 (534)
+.+++-+.+++..++++|+||++||+|+|+|+++.+.++ .++. +.+|..+++|..++.++.++++ ..+|.
T Consensus 196 ~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~g------~~F~~FF~~m~Pv~LP~lIilll~~~l~--~~~~~ 267 (515)
T TIGR00774 196 NFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQAG------WLFGEFFLRMSPVTLPVFICGLLTCALV--EKLKV 267 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 223334479999999999999999999999999997543 2344 5566666777666665555433 33443
Q ss_pred CCCCCcchhhhhHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHh
Q 035612 282 RGSGPALSEYLDKANLKR-ELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVV 360 (534)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~-~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~ 360 (534)
-....++++.. ++.+++ +.++..+.+++||..+.+=.+. ..|..-.. . +| ....+.+.+..-+++-.
T Consensus 268 ~gyg~~lp~~v-~~~l~~~~~~~~~~~~~~~~~~l~~q~~~-~~~l~~~l-a--------~h-~a~vg~igl~vii~~t~ 335 (515)
T TIGR00774 268 FGYGEKLPDNV-RQILVDFDREERKTRTNQDKIKLWVQALI-AVWLIVAL-A--------LH-LAAVGLIGLSVIILATS 335 (515)
T ss_pred cCCcccCCHHH-HHHHHHHhHHHHHhcCHHHHHHHHHHHHH-HHHHHHHH-H--------HH-HHHHhHHHHHHHHHHHH
Confidence 33344455432 222221 2222345677777666544332 23332111 0 00 00122233322222333
Q ss_pred ccCccccccCcccccccc-----cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 035612 361 HNSEHEAKGEKLMDWNKC-----KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIIT 435 (534)
Q Consensus 361 l~~~~~~~~~~~l~~~~~-----~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt 435 (534)
+. ++.+.+.. +..|... ++.--|+...++.+..+.+-+-+.....++..... .+.+.+.++|
T Consensus 336 ~~--------g~~~eh~~g~af~ealpfta--ll~vff~~vavi~~q~lf~p~i~~vl~~~~~~q~~---~ilw~SgilS 402 (515)
T TIGR00774 336 FT--------GVTDEHSIGKAFEESLPFTA--LLAVFFSVVAVIIDQELFSPIIDFVLAAEEKTQLA---LFYVFNGLLS 402 (515)
T ss_pred hc--------CCcchhhhhHHHhhhccHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccchH---HHHHHHHHHH
Confidence 32 34443333 3455544 44556778888988889888888876655444332 4568889999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHcCC-Ch---HHHHHHHHHHHhhh-cccCCCCchhhHhhcC----C-CCCHHHHHHHhH
Q 035612 436 EFTSNNATTTLVLPLLIQIAKTMHV-HP---LLLMVPGAIGAQFS-FLLPTGTPSNIVGFTT----G-HIEIQDMIKTGL 505 (534)
Q Consensus 436 ~f~Sn~a~~~il~Pi~~~la~~~g~-~p---~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~----g-~~~~~~~~k~g~ 505 (534)
++.+|.+.++++.|++..+ ...|. ++ ..++.+++++++.+ +.||.|+.+|.++.+. | +++++||+|.|+
T Consensus 403 a~IDNVP~vatmIPvIk~l-~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k~G~rISF~~flK~Gl 481 (515)
T TIGR00774 403 SISDNVFVGTVYINEAKAA-LTEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVYMAL 481 (515)
T ss_pred HhhccHHHHHHHHHHHHHH-HhcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCccHHHHHHHhH
Confidence 9999999999999999998 66676 22 46788889999995 9999999999999873 4 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035612 506 PLKIAGIAAMAFLMPTLGAY 525 (534)
Q Consensus 506 ~~~ii~~ii~~~~~~~~~~~ 525 (534)
|++++.+++..+.++++-..
T Consensus 482 P~TLvsliVs~lyl~~~~~~ 501 (515)
T TIGR00774 482 PYTIVLAIVGLLGIEFFLEP 501 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998777766443
No 16
>PLN00137 NHAD transporter family protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=289.52 Aligned_cols=370 Identities=16% Similarity=0.074 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHHhh---cCChhhHHHHHHHHHHHhccC---ChHHHHhhhc------chHHHHHHHHHHHHHHHHH
Q 035612 68 SRNMLGVLAWVFAWWLTE---AVPMPITSMAPLFLFPLFGIS---SADTVAHSYM------DDVIALVLGSFILALAVEH 135 (534)
Q Consensus 68 ~~~~l~i~~~~i~~w~~~---~ip~~~~al~~~~l~~l~gi~---~~~~v~~~~~------~~~i~li~g~~~l~~~l~~ 135 (534)
+.....+|+.+....++| +++....++....++.+++.. +.+++++... ++++++++|++++.+.+++
T Consensus 5 ~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l~~ 84 (424)
T PLN00137 5 GLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVDA 84 (424)
T ss_pred hhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777788 778788877777777666655 6666555555 5799999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHH
Q 035612 136 YNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLG 215 (534)
Q Consensus 136 tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~ 215 (534)
+|+.|+++.++.++ +++++++.+++.++++|++++|++++.++.|++..++++. +| .....+.
T Consensus 85 ~g~f~~~a~~~~~~------~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~--~~---------~~~~~~~ 147 (424)
T PLN00137 85 HQGFKLVTDSITTR------SPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPS--EY---------RKLLGAV 147 (424)
T ss_pred cCcHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc---------hHHHHHH
Confidence 99999999999875 4789999999999999999999999999999998888763 22 1223678
Q ss_pred HHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHH
Q 035612 216 VIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKA 295 (534)
Q Consensus 216 i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (534)
++++||+||+.||+|+|+|+++.+ ..++++.+++....|+.+++.++.+.+.++.+|++.+.++..
T Consensus 148 ~~~aaNiGg~~TpiGnp~NllI~~--------~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~~~~~~~------ 213 (424)
T PLN00137 148 VVVAANAGGAWTPIGDVTTTMLWI--------HGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENGSPQDSS------ 213 (424)
T ss_pred HHHhccccceeccCCCcCeeeehc--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhcc------
Confidence 899999999999999999998773 447999997777777777666676666666666553211000
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHH-hhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCc--cccccCcc
Q 035612 296 NLKRELDMLGPMAFAEKMVLAVFGMLIALW-MTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSE--HEAKGEKL 372 (534)
Q Consensus 296 ~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~-~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~--~~~~~~~~ 372 (534)
+.++..+.+.+++....+++..++.+ +..+..+. +....++.++.++.+.... ..++.++.
T Consensus 214 ----~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~gl------------~~~~~al~~~~~lll~~~~~~~~~~~~~~ 277 (424)
T PLN00137 214 ----PLLASEQMAPRGQLVFGVGVGALLFVPVFKALTGL------------PPYMGMLLGLGVLWILTDAIHYGESERQA 277 (424)
T ss_pred ----ccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCC------------ChHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 00011122223333333333333333 33332221 2344555444333332100 01112346
Q ss_pred ccccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 035612 373 MDWNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLL 451 (534)
Q Consensus 373 l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~ 451 (534)
.++++ .+++||++++++.|.|.+.++++++|+.+++++.+....+.+. .+...+.++|++.||.+.++++.|+.
T Consensus 278 ~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~~~~-----~i~~~s~ilS~~IsNVP~~~~~~p~~ 352 (424)
T PLN00137 278 LKVPQALSRIDTQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVE-----LIASAIGVASAIIDNVPLVAATMGMY 352 (424)
T ss_pred cCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHhcchHHHHHHhhhh
Confidence 78877 5999999999999999999999999999999999865433332 24577778999999999999999997
Q ss_pred HHHHHHcCCCh-HHHHHHHHHHHhhh-cccCCCCchhhHhhcCC
Q 035612 452 IQIAKTMHVHP-LLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTG 493 (534)
Q Consensus 452 ~~la~~~g~~p-~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g 493 (534)
. ..+.++ ...+.+++++++.| +.|++|+.+|.++++..
T Consensus 353 ~----~~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~ 392 (424)
T PLN00137 353 D----LTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGME 392 (424)
T ss_pred h----hccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHHh
Confidence 6 233322 34677788999995 99999999999998754
No 17
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=100.00 E-value=9.2e-32 Score=275.63 Aligned_cols=407 Identities=16% Similarity=0.211 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHh--hcCChhhHHHHHHHHHHHhccCChHHHHh--hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 72 LGVLAWVFAWWLT--EAVPMPITSMAPLFLFPLFGISSADTVAH--SYMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 72 l~i~~~~i~~w~~--~~ip~~~~al~~~~l~~l~gi~~~~~v~~--~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
..+|+.++.+-+. .++|.++.+..+..+...+|+++.+|+.+ +..+|...++++.++++...+++|+.|++|.++.
T Consensus 3 ~~if~~tl~~vi~rP~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a 82 (423)
T PF02040_consen 3 IAIFLLTLLLVIWRPRGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAA 82 (423)
T ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4455666666555 56899999999999999999999999976 4567899999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
++.++ +.+++...+++.+++.|.+.||++++.+++|++.+++++.|.+|.+ ..+..++..+.+|.+|...
T Consensus 83 ~~a~g---~~~rLf~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~-------~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 83 RWARG---SGRRLFLLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKP-------PLPFLFACAFIANTASLLL 152 (423)
T ss_pred HhcCC---CcchHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCccc-------chHHHHHHHHHhhhhhccc
Confidence 98766 5678888899999999999999999999999999999999987621 1468899999999999999
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCC
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPM 307 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 307 (534)
|++|++|++..+ ..++++.+|...+.++.++.+...+..++++||++-.++ .+ .+..++.. ...
T Consensus 153 pvSNltNLv~~~--------~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~-~~----~~~~~~p~---~~i 216 (423)
T PF02040_consen 153 PVSNLTNLVAAD--------AFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKR-YD----LSELPPPK---SAI 216 (423)
T ss_pred cccCcHHHHHHH--------ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc----hhcccCcc---ccc
Confidence 999999999984 678999999999999999999888888877777653211 11 11111100 011
Q ss_pred chhH--HHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCCch
Q 035612 308 AFAE--KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWN 384 (534)
Q Consensus 308 ~~~e--~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~ 384 (534)
+.+. +....+..+++......+..+ ++.+.++...++++..... +++..++++ ++++||+
T Consensus 217 ~d~~~~~~~~~vl~~ll~~~~~~~~~~------------ip~~~va~~~a~ill~~~~-----r~~~~~~~~~l~~~pW~ 279 (423)
T PF02040_consen 217 KDPRLFRLSLVVLALLLAGFFVASFLG------------IPVSAVAGAGAVILLALAR-----RSRKISPKRVLREVPWS 279 (423)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccC------------CcHHHHHHHHHHHHHHHHH-----hcccccHHHHHHhCCch
Confidence 1111 222223333333344433322 1234455555555544322 123455555 6899999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHH
Q 035612 385 IILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLL 464 (534)
Q Consensus 385 ~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~ 464 (534)
++.+..|.|.+..+++++|+.+++++.+....+.+...-.+....++.+.+|+++|.++..+..+.+.+ +...+.-...
T Consensus 280 il~F~~gLfvvV~~L~~~Gl~~~l~~~l~~~~~~~~~~a~~~~g~~~A~lsnl~NNLPa~Li~~~ai~~-~~~~~~~~~~ 358 (423)
T PF02040_consen 280 ILPFVLGLFVVVEGLENTGLTELLARLLGTAASQGLLAAILGMGFLSAILSNLMNNLPAVLIGALAIQA-AHAPGLVREA 358 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhc-ccCCchhHHH
Confidence 999999999999999999999999999987655454444456778889999999999987655443322 1111211224
Q ss_pred HHHHHHHHHhhh-cccCCCCchhhHhhc----CC-CCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 465 LMVPGAIGAQFS-FLLPTGTPSNIVGFT----TG-HIEIQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 465 ~~l~~~~~~~~~-~~~P~~~~~n~i~~~----~g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
..++..++++.| ++||.||-++.+..+ .| +++.+||+|.|++.+...+++....++.|
T Consensus 359 ~~~A~lIG~nlGp~lTp~GSLATLLWl~~L~~~Gi~is~~~f~k~G~vlt~p~Ll~al~~L~l~ 422 (423)
T PF02040_consen 359 LIYALLIGVNLGPNLTPIGSLATLLWLHILRRKGIKISWGEFLKLGLVLTPPVLLAALLALWLW 422 (423)
T ss_pred HHHHHHHhcccCcccchHHhHHHHHHHHHHHHCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 566788999998 999999999999876 35 89999999999999988888877766654
No 18
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=100.00 E-value=2.3e-31 Score=275.66 Aligned_cols=369 Identities=13% Similarity=0.062 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHhh---cCChhhHHHHHHHHHHHhccCChHHH---Hh--hh-c-chHHHHHHHHHHHHHHHHHhcHHH
Q 035612 71 MLGVLAWVFAWWLTE---AVPMPITSMAPLFLFPLFGISSADTV---AH--SY-M-DDVIALVLGSFILALAVEHYNIHK 140 (534)
Q Consensus 71 ~l~i~~~~i~~w~~~---~ip~~~~al~~~~l~~l~gi~~~~~v---~~--~~-~-~~~i~li~g~~~l~~~l~~tGl~~ 140 (534)
+..+|+.+....++| +++...++++...++.++|..+.+|+ +. .+ . ++++.+++|++++.+.++++|..+
T Consensus 6 ~~~if~~~y~~i~~e~~~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f~ 85 (420)
T TIGR00775 6 LCLLFLFGYLTIVFEHIVRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKGFS 85 (420)
T ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence 567888999999999 99999999999999999999988886 42 33 3 599999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHH--HHH
Q 035612 141 RLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLG--VIY 218 (534)
Q Consensus 141 ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~--i~~ 218 (534)
+++.++.++. .+++++.+++.++++|++++|++++.++.|+...+++ .+| +++.++ +++
T Consensus 86 ~la~~l~~~s------~r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~---~~~----------~~~ll~~~i~~ 146 (420)
T TIGR00775 86 ALVAWCVGKS------RKKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVK---ARE----------DRLLLGAICVI 146 (420)
T ss_pred HHHHHHHHHh------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---cCC----------ccchHHhHHHH
Confidence 9999877642 2789999999999999999999999999999999986 333 235555 899
Q ss_pred HhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHH
Q 035612 219 SAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLK 298 (534)
Q Consensus 219 aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
++|+||++||+|+|||+++.+ ..+++|.|++....|++++++++.+.++.+.+|++.+. +.+ +
T Consensus 147 AANiGG~~TpIGdP~Ni~i~~--------~~~i~f~~f~~~l~~p~li~l~v~~~il~~~~~~~~~~-~~~----~---- 209 (420)
T TIGR00775 147 AVNAGGAWTPLGDVTTTMLWI--------NGKIRFSGIIMPLFVPSLVCVVVAGFCGQLFLPKRKPN-TIH----E---- 209 (420)
T ss_pred hcccccceeeCCCcchhHhHh--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccc----c----
Confidence 999999999999999999884 44799998877877778777777777777777664321 100 0
Q ss_pred HHHhhcCCCchhHHHHHHHHHHH-HHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccC---ccccccCcccc
Q 035612 299 RELDMLGPMAFAEKMVLAVFGML-IALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNS---EHEAKGEKLMD 374 (534)
Q Consensus 299 ~~~~~lg~~~~~e~~~l~~~~~~-i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~---~~~~~~~~~l~ 374 (534)
+ .+..+...++++.+..+... +.........+ .+....+++++.++.+... +..++++...+
T Consensus 210 -~-~~~~~~~~~~~~~l~l~~~~~l~~f~~~~~~~------------l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~ 275 (420)
T TIGR00775 210 -D-VELKRALPKSRRIVLLGVGSLLMVPSWKAVLG------------FPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLR 275 (420)
T ss_pred -c-cccccchhhhHHHHHHHHHHHHHHHHHHhhcC------------ccHHHHHHHHHHHHHHHHHHhhccccccccccC
Confidence 0 01111111223222222222 22222222212 1344555555544443320 00001111355
Q ss_pred ccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 035612 375 WNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQ 453 (534)
Q Consensus 375 ~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~ 453 (534)
+++ .+++||+++++++|.|.+.++++++|..+++++.+....+.... .+.+.++|++.||.|.++.+.|+...
T Consensus 276 ~~~~l~~VDw~tLlfF~GlFilvg~l~~~G~l~~la~~l~~~~~~~~~------~~~s~i~S~~IdNVP~va~~i~l~~~ 349 (420)
T TIGR00775 276 VPHILTRIDISSLTFFIGILLAVNALSLLGYLEDVSNVMDTQFSRNWA------AVMVGLLSSVLDNVPLVAATLGMYPL 349 (420)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchH------HHHHHHHHHHhccHHHHHHHHHhccc
Confidence 666 59999999999999999999999999999999988754332211 35566799999999999999999643
Q ss_pred HHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHH
Q 035612 454 IAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMI 501 (534)
Q Consensus 454 la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~ 501 (534)
+. ....+.+++++++.| +.|++|+.+|.++.+..+.++..++
T Consensus 350 -----~~-~~~~w~aLalga~lGGn~tlIGS~Anvv~~~~~~~~~~~~~ 392 (420)
T TIGR00775 350 -----PM-SDGLWKLIAYTAGTGGSILIIGSAAGVALMGAEKVQFTWYF 392 (420)
T ss_pred -----cC-chHHHHHHHHHHCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234567778889885 9999999999998876655544333
No 19
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=267.32 Aligned_cols=420 Identities=19% Similarity=0.281 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHH-----HHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 73 GVLAWVFAWWLTEAVPMPITSMAPL-----FLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 73 ~i~~~~i~~w~~~~ip~~~~al~~~-----~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
.+++...++.++|-.|....+++.. .+..+...-+++++.+..+.++..+++|++++...+++||..|++|-...
T Consensus 183 ~il~gfyaLiVfe~v~rt~aa~~~s~ls~a~Lavi~~rptle~iv~wID~etL~LLfGmMilv~ilseTg~FdYlav~ay 262 (685)
T KOG2639|consen 183 VILAGFYALIVFEIVDRTFAAMLASTLSLAILAVIGDRPTLETIVSWIDFETLGLLFGMMILVAILSETGVFDYLAVLAY 262 (685)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4455556666777777665555433 23344455678999999999999999999999999999999999999998
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
++.+| +.+-++..++++++++|.+.+|..++.++.|+++.+|+.++.+| .+.+++++.-+|+||..|
T Consensus 263 riSrG---~~w~li~~Lclvtav~Sa~ldN~TtvLLltpv~IRLcevm~L~p----------~pvLi~~vi~aNIGga~T 329 (685)
T KOG2639|consen 263 RISRG---HVWPLICLLCLVTAVLSAFLDNVTTVLLLTPVVIRLCEVMNLDP----------HPVLIAVVIYANIGGAAT 329 (685)
T ss_pred hHhcC---CchHHHHHHHHHHHHHHHHhcCCeEEEEecHHHHHHHHHhcCCC----------CceEEEEEEecccccccC
Confidence 88776 56788888999999999999999999999999999999999998 568889999999999999
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C-CCc---chhhh-------
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRG----S-GPA---LSEYL------- 292 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~----~-~~~---~~~~~------- 292 (534)
|+|+|+|.+++..-+ . ...+++|..|-...+|..+.+++.+..+.+.+|..++ + .++ ++++.
T Consensus 330 PIGdPpNvIIatns~--i-~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly~~~~~l~~k~~~e~~el~~ei~v~r~~~ 406 (685)
T KOG2639|consen 330 PIGDPPNVIIATNSE--I-PKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLYWNIEELMVKEPDEEVELKHEIHVWRLAA 406 (685)
T ss_pred cCCCCCcEEEEecce--e-cccCcchhhhhHHHHHHHHHHHHHHhhhHhhheechHHHhccCchHHHHHHHHHHHhhcCH
Confidence 999999998774211 1 1357899999999999999988888777766665421 1 000 00000
Q ss_pred --------hHHH--------HHHHHhhcC--------------------------CCchh--HHHHHHHHHHHHHHHhhc
Q 035612 293 --------DKAN--------LKRELDMLG--------------------------PMAFA--EKMVLAVFGMLIALWMTR 328 (534)
Q Consensus 293 --------~~~~--------~~~~~~~lg--------------------------~~~~~--e~~~l~~~~~~i~l~~~~ 328 (534)
+++. ++...++++ +.+.+ -++....+...++.+++.
T Consensus 407 ~~~s~~sk~~envR~~~~~~i~~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~ll~k~~~aL~fviv~F~l~ 486 (685)
T KOG2639|consen 407 AQVSPASKEEENVRRTLSAKIRARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKTLLIKCLRALWFVIVCFFLQ 486 (685)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHHHHHhhhccccccCCccHHHHhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 0010 110000110 01000 012233333444455554
Q ss_pred ccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc----cCCCchHHHHHHHHHHHHHHHHHhCH
Q 035612 329 SITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC----KKLPWNIILLLGAGFAIADGVRTSGL 404 (534)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~----~~v~w~~i~l~~~~~~l~~~l~~sG~ 404 (534)
+. |+| +...+.+++++++++++.++ .+.||. .++.|++++++++.|.+-.++++.|+
T Consensus 487 sv----p~~----~~gl~LgW~AIlgA~llLIl-----------~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGl 547 (685)
T KOG2639|consen 487 SV----PSL----HMGLSLGWTAILGAILLLIL-----------ADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGL 547 (685)
T ss_pred cc----HHH----hcCCCccHHHHHHHHHHHHH-----------hchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCH
Confidence 32 222 11235678999988887765 344553 79999999999999999999999999
Q ss_pred HHHHHHHhhhh---cccc--HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH--HcCCChHHHHHHHHHHHhhh-
Q 035612 405 ADDLSKALDFL---EAAP--YLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAK--TMHVHPLLLMVPGAIGAQFS- 476 (534)
Q Consensus 405 ~~~ia~~l~~l---~~~~--~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~--~~g~~p~~~~l~~~~~~~~~- 476 (534)
.+|+++...+. .+.+ ..+.++++.+.+++.+.|.+|.+.+++++++..++.. ++|.+-.+++.+++++++.|
T Consensus 548 i~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gG 627 (685)
T KOG2639|consen 548 IEWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGG 627 (685)
T ss_pred HHHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcC
Confidence 99999987642 1112 2233445667888999999999999999999988865 46776667777778888885
Q ss_pred cccCCCCchhhHhhcC----C-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035612 477 FLLPTGTPSNIVGFTT----G-HIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFG 528 (534)
Q Consensus 477 ~~~P~~~~~n~i~~~~----g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~~~~ 528 (534)
+.|-+|+.+|.++.+. | ++++.+|+|.|+|+++..+.++.+.+. ....+|+
T Consensus 628 NgTLiGasANvv~A~iAeqHGYkltF~~fF~~GfPmml~si~i~t~yLl-vaHsvf~ 683 (685)
T KOG2639|consen 628 NGTLIGASANVVAAGIAEQHGYKLTFTQFFKVGFPMMLGSITIGTVYLL-VAHSVFA 683 (685)
T ss_pred CceeechhhHHHHHHHHHHcCceEEehhHHHhcccHHHHHHHHHHHHHH-HHhhhcc
Confidence 9999999999999873 5 689999999999999988877655443 3444553
No 20
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=100.00 E-value=1.8e-29 Score=263.70 Aligned_cols=408 Identities=13% Similarity=0.091 Sum_probs=294.2
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh----hhcc--hHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 035612 72 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH----SYMD--DVIALVLGSFILALAVEHYNIHKRLALN 145 (534)
Q Consensus 72 l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~~~~--~~i~li~g~~~l~~~l~~tGl~~ria~~ 145 (534)
++.++..+.+....+++..+.-++..+...+..-.+ +|..+ ++.+ ++..+++.+..++..++++|..|+++++
T Consensus 7 ~~~~~~~~~l~~~~k~~~~~al~~~~~~~~~~~g~~-~~~~~~i~~G~~~~~~~~~~i~~~~~l~~il~~sG~~~~i~~~ 85 (431)
T TIGR00784 7 FSMMTVFMILIMTKRLSPLVALTITPIVFALIGGFG-KGIGDMMIEGIQTVAPTAAMLLFAILYFGIMIDAGLFDPLIEK 85 (431)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555566666778887777777776666655566 66533 4443 8889999999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccc
Q 035612 146 ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGM 225 (534)
Q Consensus 146 i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~ 225 (534)
++++.|+ ++..+.+.....+.+++.+.+|+.+..++.|+..++++++|.|| ..+...+..+++.++
T Consensus 86 iv~~~~~---~~~~l~~~~~~~~~~i~~~~~~~~~~li~~p~~~~l~~~lgi~~----------~~l~~~i~~~~~~~~- 151 (431)
T TIGR00784 86 ILSIVKG---DPLKIAVGTAVLTMLIALDGDGTTTYMITVSAMLPLYKRLGMNP----------MVLAGIAMLGLGIMN- 151 (431)
T ss_pred HHHHhCC---CCceeHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHcCCCH----------HHHHHHHHHHhhhhc-
Confidence 9999986 45567778888888889999988889999999999999999998 567778888888888
Q ss_pred cccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---cchhhhhHHHHHHHHh
Q 035612 226 STLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGP---ALSEYLDKANLKRELD 302 (534)
Q Consensus 226 ~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 302 (534)
.+|.|+++|..+. ..++++.||+.+..|..+..++....+.++++|+++++. +.+++ .++. +++.+
T Consensus 152 ~~P~g~p~~~~a~---------~lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~-~~~~~ 220 (431)
T TIGR00784 152 MIPWGGPTTRAIS---------VLGLDPSEFFVPLIPTMLGGILCVIAVAYLLGKKERKRLGVIQLEPR-ASQS-YPAAA 220 (431)
T ss_pred ceeCCchHHHHHH---------HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchh-hhhh-hhccc
Confidence 8899999996665 247899999999999999887777666666665433210 00000 0000 00000
Q ss_pred hcCCCc--hhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccccC
Q 035612 303 MLGPMA--FAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKK 380 (534)
Q Consensus 303 ~lg~~~--~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~~~ 380 (534)
+..+.+ +..+..+..++.++++...... +....+++...+.+++...+.++..+......-+.
T Consensus 221 ~~~~~~~~~~~~~~Ll~~l~viv~~~~~~~---------------~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~ 285 (431)
T TIGR00784 221 LESELKRPRLIWFNLLLTISLMVFLVLGTK---------------HLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNA 285 (431)
T ss_pred hhhhhcCchHHHHHHHHHHHHHHHHHhccc---------------CHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccH
Confidence 001111 2234555555555554433211 22333344433333332101111111111000146
Q ss_pred CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 381 LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLE-AAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 381 v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~-~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
++|.++++.++.| +++++++|..|++++.+.+.. +.+.....+++.+++..+++++||++....+.|++.+++++.|
T Consensus 286 v~~~~Li~~aglf--~~~l~~~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G 363 (431)
T TIGR00784 286 LTVVSMVFAAGVF--TGILSGTKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYYFGVLPIFAEAASAYG 363 (431)
T ss_pred hHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 7788888888888 899999999999999998753 3333235567889999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
++|.....+..++.+.++++|+ +|+|.+++|.++++.+|+.|.+++..+.+.++..+.....|
T Consensus 364 ~~~~~l~~a~~i~~~~~~~SPv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~~~~~~~~g 426 (431)
T TIGR00784 364 IDPVEIARASIMGQPVHLLSPL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVMTLLALLIG 426 (431)
T ss_pred CCHHHHHHHHHhcccchhcCCc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998888888888899999 89999999999999999999999999998888777665555
No 21
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=6.6e-29 Score=254.85 Aligned_cols=333 Identities=23% Similarity=0.356 Sum_probs=247.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHh-----ccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 75 LAWVFAWWLTEAVPMPITSMAPLFLFPLF-----GISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 75 ~~~~i~~w~~~~ip~~~~al~~~~l~~l~-----gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
.+.....+..++.|....+.+...++.++ +..+++|..+.+.++++.+++|+++ ++++++||..|++++++.++
T Consensus 6 ~~i~~~~~~~~~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~ 84 (351)
T PF03600_consen 6 ILIVLIVLIRKKIPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRK 84 (351)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhc
Confidence 33444466677788888887777777777 8889999999999999999999999 99999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccc
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLT 229 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~ 229 (534)
.|+ +++++.+.++..++++|++.+|++++.++.|++.+++++.|.+| +.+.+.+.+++|+||+.||+
T Consensus 85 ~~~---~~~~l~~~~~~~~~~lS~~~~N~~~v~~~~Pi~~~~~~~~~i~~----------~~~l~~l~~~a~~gg~~t~i 151 (351)
T PF03600_consen 85 SGG---KPWRLLLLLMLVTALLSAFLDNTTVVLIMIPIVLSLARKLGIPP----------SPLLMPLAFAANIGGMLTPI 151 (351)
T ss_pred cCC---CHHHHHHHHHHHHHHHHHhhhcchHHHhhHHHHHHHHHHcCCCh----------HHHHHHHHHHhccccccCcC
Confidence 876 56688889999999999999999999999999999999999988 56889999999999999999
Q ss_pred cchhHHHHHHHHhhhCCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCC
Q 035612 230 GTGVNLILVGMWKTYFPEANPISF--STWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPM 307 (534)
Q Consensus 230 g~~~n~i~~~~~~~~~~~~~~is~--~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 307 (534)
|+|+|+++.+ ..++++ .|++...+|..++.+++..+..++..+++++
T Consensus 152 G~p~nl~i~~--------~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~----------------------- 200 (351)
T PF03600_consen 152 GNPTNLIIAN--------ASGLPFFGFDFFALGLPAVIVGLLVLIFILYFLFRKRKP----------------------- 200 (351)
T ss_pred CCcchhhhhh--------hcccccchhhhHhhhHHHHHHHHHHHHHHHHHHccccCc-----------------------
Confidence 9999988842 445666 9999999999988877766544433322110
Q ss_pred chhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccccCCCchHHH
Q 035612 308 AFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIIL 387 (534)
Q Consensus 308 ~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~~~v~w~~i~ 387 (534)
+.......+...+..... ..+.. +..++.+.+.++.++.+ ..+.++..-..++..+++|++++
T Consensus 201 --~~~~~~~~l~~~~~~~~~--~~~~~------------~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll 263 (351)
T PF03600_consen 201 --KLFASPFILVLVVILVLL--VSGLV------------PIWIALLIGALLALLTN-CKDLKEAYRVLNSGASIDWNTLL 263 (351)
T ss_pred --chhHHHHHHHHHHHHHHH--HhccC------------cHHHHHHHHHHHHHHHh-cccchhhhHHHHhhccchHHHHH
Confidence 001111122222222221 11211 23344444444443322 00000000011222489999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHH-----HHHHHHHHHHcCCCh
Q 035612 388 LLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLV-----LPLLIQIAKTMHVHP 462 (534)
Q Consensus 388 l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il-----~Pi~~~la~~~g~~p 462 (534)
++++.+.++++++++|..|.+++.+.+..+ + .. ...+...+.+++++.||.+....+ .|+....++++|+||
T Consensus 264 ~~~~~~~~~~~l~~tG~~~~la~~l~~~~~-~-~~-~~~i~~~~~~ls~~~~n~p~~~~~~~~~~~pi~~~~~~~~Gv~~ 340 (351)
T PF03600_consen 264 FFAGLFIFVGALSNTGAFEALADWLLSISG-P-LG-PLAILWVSALLSAVISNVPATLLMSNDAMLPIAISMAQQFGVSP 340 (351)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-h-hH-HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999987644 2 11 123445567888999999988877 999999999999999
Q ss_pred HHHHHHHHHH
Q 035612 463 LLLMVPGAIG 472 (534)
Q Consensus 463 ~~~~l~~~~~ 472 (534)
..+.++.+++
T Consensus 341 ~~l~~~~~ia 350 (351)
T PF03600_consen 341 LPLAWALAIA 350 (351)
T ss_pred HHHHHHHHhc
Confidence 9988887765
No 22
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.95 E-value=2.2e-24 Score=225.13 Aligned_cols=363 Identities=12% Similarity=0.086 Sum_probs=251.4
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHH
Q 035612 109 DTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPV 187 (534)
Q Consensus 109 ~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi 187 (534)
++.++...+.....+.-...++..++|+|+.||+.+...+.+|+. +.......++.+++++++. |++++++++.|+
T Consensus 29 ~~~~~~~~~~~l~ai~~Fi~~g~~l~~~G~~~~l~~~~~~~~g~~---~~~~~~~~~~~~~l~g~l~Gs~~ataa~~~~~ 105 (405)
T TIGR00786 29 QKLFGGTDSFTLLAIPFFILAGNLMNRGGLARRLLNFAKALVGHL---RGGLGHVNVLACALFAAVSGSSVATAAALGSL 105 (405)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 344556666677777777789999999999999999999999874 4556677888899999998 999999999999
Q ss_pred HHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 035612 188 ATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI 267 (534)
Q Consensus 188 ~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~ 267 (534)
..++.++.|++|+ .+.+..+..++.+++++...+.+.++.+ .++++.||+..+..++++.
T Consensus 106 ~iP~m~~~g~~~~-------------~a~av~a~~~~~g~l~Pp~~~~i~~a~~-------~~i~~~~~~~a~~~p~~l~ 165 (405)
T TIGR00786 106 LIPAMTKAGYPKA-------------FAAGVIAASGIIGPLIPPSIVMIIYGVA-------AGVSIAKLFIAGILPGLLL 165 (405)
T ss_pred HHHHHHHcCCCHH-------------HHHHHHHHHhccccccCchHHHHHHHHH-------hCCCHHHHHHHHHHHHHHH
Confidence 9999999999873 1334444434555543222233444322 3689999999776666665
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCc
Q 035612 268 FVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGD 347 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (534)
......+..++.++++.+++ ++ .+ .+++.+ ..++++..+.+..+.+..+....... ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~-~~-~~---~~~~~~----~~~~~~~~l~l~~~vi~~~~~g~~~~------------~~a 224 (405)
T TIGR00786 166 ALSLMLTIWWVARRLGYPRP-PK-AS---LRQRLR----AFRKSIWALLLPVLIIGGIFSGIFTP------------TEA 224 (405)
T ss_pred HHHHHHHHHHHHhcCCCCCC-Cc-cC---HHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCH------------HHH
Confidence 55544444444443221111 11 01 111111 11234444555444444444421100 011
Q ss_pred hHHHHHHHHHHH-hccCccccccCcccccccc-cCCC------chHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhcccc
Q 035612 348 GTASVSCDGNIV-VHNSEHEAKGEKLMDWNKC-KKLP------WNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAP 419 (534)
Q Consensus 348 ~~va~l~~~ll~-~l~~~~~~~~~~~l~~~~~-~~v~------w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~ 419 (534)
+..+.+.+.++. +.. +.++|||. +.++ |.++++++++..++.+++++|+.+.+++.+..... +
T Consensus 225 ~~~~~~~alli~~~~~--------~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~~-~ 295 (405)
T TIGR00786 225 AAVAAVYALALSTFVY--------RELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAIS-S 295 (405)
T ss_pred HHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCc-c
Confidence 223333333332 121 23566664 3333 89999999999999999999999999999987654 4
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHH
Q 035612 420 YLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQD 499 (534)
Q Consensus 420 ~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~ 499 (534)
++...+++.++..+++++++|+++..++.|++.+++++.|+||..+.+...++++.++++|.-+.+..+..+.++++++|
T Consensus 296 ~~~~~~li~~~~~ilg~~~~~~a~~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~~g~ltPPvg~~~~~~~~~~~~~~~~ 375 (405)
T TIGR00786 296 PIVFLIMINILLLIVGMFMDLTPAILILTPILLPVAVHLGIDPVHFGVMFVLNLEIGLLTPPVGTNLFVASGVAKMSITE 375 (405)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCCchHHHHHHHHhcCCCHHH
Confidence 56666678888889999999999999999999999999999999998888889888999984333334667888999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 035612 500 MIKTGLPLKIAGIAAMAFLMPTLGA 524 (534)
Q Consensus 500 ~~k~g~~~~ii~~ii~~~~~~~~~~ 524 (534)
++|.++|+.++.+++..++.++..-
T Consensus 376 ~~k~~~p~~~~~~~~~~~~~~~p~~ 400 (405)
T TIGR00786 376 VTRALWPFLLAQFLVLLLVTYFPAL 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888777766544
No 23
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.93 E-value=4.5e-22 Score=207.04 Aligned_cols=391 Identities=14% Similarity=0.111 Sum_probs=248.8
Q ss_pred hhHHHHHHHHHH-HhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 035612 90 PITSMAPLFLFP-LFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTT 168 (534)
Q Consensus 90 ~~~al~~~~l~~-l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~ 168 (534)
+..+.++..++. .+|. +++| +..++++++++......+++|||..|+.+++..++.++ ++++..+.+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~---~~~~~~lli~i~~ 96 (433)
T PRK09412 25 GFAGGLGVLILTFIFGL-KPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRK---NPKYITFLAPIVT 96 (433)
T ss_pred HHHHHHHHHHHHHhcCC-CCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC---CCchhHhHHHHHH
Confidence 333444444333 4464 4444 78899999999999999999999999999988888776 4566667788888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCC
Q 035612 169 AFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEA 248 (534)
Q Consensus 169 ~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~ 248 (534)
.++|.+.++...+..+.|+..++++++|+||. ..+..+..++++|+.++|+++++|.++ +.++ +
T Consensus 97 ~lfs~~~~~~~~~i~~~PI~i~ia~~lG~d~~----------~~l~~~~~~a~iG~~aspin~~tv~ia-~~ia-----~ 160 (433)
T PRK09412 97 YLFTFLAGTGHIAFSTLPVIAEVAKEQGIRPS----------RPLSIAVVASQIAITASPISAAVVAMS-SVLE-----P 160 (433)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHcCCCCc----------chHHHHHHHHHHhcccCCccHHHHHHH-HHHh-----c
Confidence 88997777766678899999999999999984 244567789999999999987755444 4443 2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhc
Q 035612 249 NPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTR 328 (534)
Q Consensus 249 ~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~ 328 (534)
.++++.+|+.+.+|..+++.++.+++..++.|+.+++++.+++.+++..+++.++..+.+++||.++.+|++.++..+..
T Consensus 161 ~gi~f~~~~~~~lp~~iv~~~~~~~~~~~ya~kv~~~P~~~~~~~~~~~~~~~~~~~~~t~r~kl~l~if~~~i~~~~i~ 240 (433)
T PRK09412 161 LGVSYLTLLMVVIPSTLLAVMVAAFVTNKMGKELKDDPEYQKRLAEGLVKLRGEKEIEIKPGAKLSVILFLLGVVAVVLY 240 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHhhchhhccccccccccCHhHHHHHHHHHHHHHHheee
Confidence 36999999999999999988887776554444333222111100000100010112467899999999998887454433
Q ss_pred ccCC-CCCCccccccc-ccC-chHH-HHHHHHHHHhccCccccccCcccccccc-cC-CCc---hHHHHHHHHHHHHHHH
Q 035612 329 SITD-DIPGWGALFND-RAG-DGTA-SVSCDGNIVVHNSEHEAKGEKLMDWNKC-KK-LPW---NIILLLGAGFAIADGV 399 (534)
Q Consensus 329 ~~~~-~~~~~~~~~~~-~~~-~~~v-a~l~~~ll~~l~~~~~~~~~~~l~~~~~-~~-v~w---~~i~l~~~~~~l~~~l 399 (534)
...+ ..|+|..- +. +.+ .... .+..+++..++.+ ++.+|. ++ .-+ ..++++.|..-....+
T Consensus 241 G~~~~~~~~w~~~-~~~~~~e~~~~~fl~~gii~glv~g---------l~~~~ia~~~~F~~G~~~~v~iiGlA~~i~vi 310 (433)
T PRK09412 241 AIFPSLRPGFIEG-PPLGMTEAIQIFMLSAAALIVLLCK---------IDTDEILSSSVFKSGMSACICILGVAWLGDTF 310 (433)
T ss_pred eeccccccccccC-CCCCHHHHHHHHHHHHHHHHHHHhC---------CCHHHcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 22355100 00 000 1111 2344444444432 233332 21 333 3344566666666665
Q ss_pred HHhCHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcc
Q 035612 400 RTSGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFL 478 (534)
Q Consensus 400 ~~sG~~~~ia~~l~~-l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~ 478 (534)
.+.+ .|.+.+.+.. +++.| +.....++++..++ .||. ++. |++.|+|+.+|++|.....+...+.+ .++
T Consensus 311 ~~~~-~dtI~~~l~~~l~~~p-~~~a~~mfiv~~~i---~gqA---a~~-pIm~PLad~lGi~rq~~Vla~q~g~g-n~i 380 (433)
T PRK09412 311 VNAH-IDEIKETAGSLIQSYP-WLLAVALFFASALL---YSQA---ATA-KALMPLALALGVPPLTAIASFAAVSG-LFV 380 (433)
T ss_pred HHhh-HHHHHHHHHHHHhhCC-HHHHHHHHHHHHHH---hhHH---HHH-HHHHHHHHHcCCCHHHHHHHHHHhcc-CEE
Confidence 5556 6999999885 46556 55555555555554 2433 344 99999999999999998777666665 567
Q ss_pred cCCCCchhhHhhcCCCCCHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Q 035612 479 LPTGTPSNIVGFTTGHIEIQDMIKTG-----LPLKIAGIAAMAFLMPTLGAY 525 (534)
Q Consensus 479 ~P~~~~~n~i~~~~g~~~~~~~~k~g-----~~~~ii~~ii~~~~~~~~~~~ 525 (534)
+|. ++.-+-+.+..++++.+|.|+. ....+++....+.+.+..+..
T Consensus 381 ~Pt-s~~~ma~l~~~~i~~~~w~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
T PRK09412 381 LPT-YPTLLAAVEMDDTGTTRIGKYVFNHSFMIPGLLGIAVSVAFGFLLGSI 431 (433)
T ss_pred CCC-cHHHHHHHhccCCCcchhhhhhcCCccccccHHHHHHHHHHHHHHHHH
Confidence 777 3444444566788888888862 234455555555555555543
No 24
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=99.92 E-value=3.3e-21 Score=197.81 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=260.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHH
Q 035612 109 DTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPV 187 (534)
Q Consensus 109 ~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi 187 (534)
++.+++..+.+..-+....+.|+.++++|+.||+-+..-+.+|+- +..+-..-...+.+++... |..|+++.+..+
T Consensus 45 ~~~~~~~~s~~LlAIPlFil~G~lm~~~Gi~~rl~~~~~~lvG~~---rGGLa~v~v~as~~fgaiSGSs~A~~aaiG~i 121 (425)
T PRK15060 45 QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHK---PGGLGYVGVLAAMIMASLSGSAVADTAAVAAL 121 (425)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 455667777777777777788899999999999999999999874 3445566667777887777 899999999999
Q ss_pred HHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 035612 188 ATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI 267 (534)
Q Consensus 188 ~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~ 267 (534)
..+..+|.|+|++ +..++. +.-|+.+..+..+.++++++... +.|..+.+..++.++++.
T Consensus 122 ~iP~M~k~GY~~~-----------~aag~~--aasg~lG~lIPPSi~mIiy~~~~-------~~Si~~LF~AGiiPGll~ 181 (425)
T PRK15060 122 LVPMMRSANYPVN-----------RAAGLI--ASGGIIAPIIPPSIPFIIFGVSS-------GLSISKLFMAGIAPGIMM 181 (425)
T ss_pred HHHHHHHcCCCHH-----------HHHHHH--HHhccCCccCCcHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHH
Confidence 9999999999862 223333 33345555666677788887543 579999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCc
Q 035612 268 FVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGD 347 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (534)
......+.+++.||++.+ +.++ ...+|..+.. ++-...+... +.++..+... +-+.. +.
T Consensus 182 ~~~~~~~~~~~a~~~~~~-~~~~----~~~~~~~~~~----~~a~~~l~~p-viilggI~~G-------i~TpT----EA 240 (425)
T PRK15060 182 GATLMLTWWWQASRLNLP-RQPK----ATMREIWQSL----VSGIWALFLP-VIIIGGFRSG-------LFTPT----EA 240 (425)
T ss_pred HHHHHHHHHheeecCCCC-CCCC----CCHHHHHHHH----HHHHHHHHHH-HHHHHHHHHh-------ccCHH----HH
Confidence 777766665544433211 1111 0011111110 1111222211 1222222211 11100 12
Q ss_pred hHHHHHHHHHHHhccCccccccCcccccccc-------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccH
Q 035612 348 GTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPY 420 (534)
Q Consensus 348 ~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~ 420 (534)
+.++++.+.++..+-+ +.++||++ .+..-.+.+++++...+++.+..+|+.+.+++.+...++ ++
T Consensus 241 aava~~yal~v~~~iy-------r~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~-~~ 312 (425)
T PRK15060 241 GAVAAFYALFVAVVIY-------REMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVD-SP 312 (425)
T ss_pred HHHHHHHHHHHHHHHH-------cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC-CH
Confidence 3455555555533322 24677765 245666788999999999999999999999999988865 55
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHH
Q 035612 421 LAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDM 500 (534)
Q Consensus 421 ~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~ 500 (534)
+.+++++.++..++..|++.++...++.|++.++++++|+||.++.+.+.+....+.+||.-...-.+..+..+.+..|.
T Consensus 313 ~~~Ll~i~~~~lvlGmfld~~a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i 392 (425)
T PRK15060 313 RLLFIVIMVAIMVVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDA 392 (425)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHH
Confidence 66667888888899999999999999999999999999999999999999999999999986555566666778999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHh
Q 035612 501 IKTGLPLKIAGIAAMAFLMPTLGAYV 526 (534)
Q Consensus 501 ~k~g~~~~ii~~ii~~~~~~~~~~~~ 526 (534)
+|..+|+....+++..++.++..-..
T Consensus 393 ~~~~~Pf~~~~~~~l~l~~~~P~l~l 418 (425)
T PRK15060 393 VRGVFPYVLVLYSLLVLFIFIPELII 418 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999988888777777665443
No 25
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.6e-20 Score=185.87 Aligned_cols=359 Identities=18% Similarity=0.155 Sum_probs=253.3
Q ss_pred chHHHHHHHHHHHH-HHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHh
Q 035612 117 DDVIALVLGSFILA-LAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQN 194 (534)
Q Consensus 117 ~~~i~li~g~~~l~-~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~ 194 (534)
++...+-+..|+++ ..+++.|+.||+.+...+.+|+- +..+-..-...+.+++... |..|.++.+..+..+..++
T Consensus 6 ~sf~LlAiPfFIlaG~lM~~gGi~~Rli~fa~a~vGh~---rGGL~~v~i~~s~lf~~iSGSa~Ad~aa~Gsi~ip~M~k 82 (379)
T COG1593 6 DSFSLLAIPFFILAGELMNSGGIAKRLIDFANALVGHI---RGGLAYVNIVASMLFGGISGSAVADAAALGSILIPEMKK 82 (379)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhCCc---cchHHHHHHHHHHHHhcccccHHHHHHHHHHHhHHHHHH
Confidence 34445555555555 99999999999999999999974 3445556666777777777 8899999999999999999
Q ss_pred CCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035612 195 LPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAI 274 (534)
Q Consensus 195 ~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~ 274 (534)
.|++++ . +.+.-++-+..+..+..+.+.++++..+ +.|..+.|..|+.+++++.+.....
T Consensus 83 ~GY~~~-----------~--aa~l~a~s~~ig~lIPPSi~~IIyg~~a-------~~SI~~LF~aGi~PGlLl~~~lm~~ 142 (379)
T COG1593 83 RGYPAA-----------F--AAALTAASGIIGPLIPPSIPFIIYGVAA-------GVSIGKLFVAGIVPGLLLTLALMVV 142 (379)
T ss_pred cCCCHH-----------H--HHHHHHhhccccccCCCCchHHHHHHhc-------cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999873 1 2233333344445555567788887544 5899999999999999988887777
Q ss_pred HHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHH
Q 035612 275 LCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSC 354 (534)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~ 354 (534)
.+++.|+++.+++ ++...+|..+.- ++..+.+..-++.+.+... |+-+.. +.+.++.+.
T Consensus 143 ~~~~a~~~~~~~~-~~~s~~e~~~~~--------~~a~~aLllpvIIigGi~~--------G~fTpT----Eaa~iav~y 201 (379)
T COG1593 143 AYIVARKRGYPRE-ERASFKERLKAA--------VKALWALLLPVIIIGGIRS--------GIFTPT----EAAAIAVLY 201 (379)
T ss_pred HHHHHHhcCCCcc-cCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHhh--------ccccHH----HHHHHHHHH
Confidence 7766666553211 110111111111 1112222222222221111 111000 234455555
Q ss_pred HHHHHhccCccccccCcccccccc-------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHH
Q 035612 355 DGNIVVHNSEHEAKGEKLMDWNKC-------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIV 427 (534)
Q Consensus 355 ~~ll~~l~~~~~~~~~~~l~~~~~-------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~ 427 (534)
+.++..+-+ +-++|+++ -+..-.+.+++++.-.+++.++..++.+.+++.+....+++. .+++++
T Consensus 202 al~v~~~vY-------r~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~~~-~~ll~i 273 (379)
T COG1593 202 ALLVGAFVY-------RELTLKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDSPL-VVLLVI 273 (379)
T ss_pred HHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCChH-HHHHHH
Confidence 555443322 23556554 255667889999999999999999999999999999887654 455588
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHH
Q 035612 428 CLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPL 507 (534)
Q Consensus 428 ~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~ 507 (534)
.++..++..|++.+++..++.|++.+++.+.|+||.++.+...+..+.+.+||.-...-.++.+.++.+.++..|.-+|+
T Consensus 274 nl~llvvG~fmd~~a~ilil~Pil~Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~~~~~~k~i~Pf 353 (379)
T COG1593 274 NLLLLVVGTFMDLTAAILILTPILLPIAAALGIDPVHFGVVFVLNLSIGLITPPVGMVLFVASAVGKVPIEAVIKAILPF 353 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCceeeHHHHHHHHHhhCCCCCcchhHHHHHhhcCCCHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999998755444555566899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 035612 508 KIAGIAAMAFLMPTLGAYVF 527 (534)
Q Consensus 508 ~ii~~ii~~~~~~~~~~~~~ 527 (534)
-...++...++.++-....+
T Consensus 354 l~~~~~~L~li~~~P~lsl~ 373 (379)
T COG1593 354 LVALILVLLLITYFPELSLW 373 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 98888888877777655444
No 26
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=99.87 E-value=4.4e-19 Score=184.50 Aligned_cols=358 Identities=16% Similarity=0.171 Sum_probs=247.9
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q 035612 112 AHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATG 190 (534)
Q Consensus 112 ~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~ 190 (534)
+++..+.+...+.-...++..++++|+.||+.+...+++|+.+.+ +-....+.++++++.. |+.|+++.+.++..+
T Consensus 47 ~~~~~~~~l~aiplFil~G~ll~~~gi~~~l~~~~~~~~g~~~Gg---la~~~v~as~~fgaisGS~~A~~a~~G~i~iP 123 (416)
T PF06808_consen 47 FSGLDSFTLLAIPLFILMGELLERSGIADRLIDFANALVGRVRGG---LAQVAVVASALFGAISGSSVANAAAIGSITIP 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCcc---chhHHHHHHHHHHHhccchHhHHHHHHHHHHH
Confidence 344444555555556777899999999999999999999875443 3345555777787777 999999999999999
Q ss_pred HHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 035612 191 ILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA 270 (534)
Q Consensus 191 i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~ 270 (534)
..+|.|++++ ...++..++ |+.+..++.....++.+.. ..+.|+.+.+..++.++++....
T Consensus 124 ~M~k~GY~~~-----------~A~av~aas--gtlG~liPPsi~~ii~~~a------~~~~si~~lf~agiiPgll~~~~ 184 (416)
T PF06808_consen 124 EMKKAGYPPE-----------FAAAVIAAS--GTLGQLIPPSIGMIIYGMA------VTGVSIGDLFIAGIIPGLLLALG 184 (416)
T ss_pred HHHHcCCCHH-----------HhHHHHhhc--cccchhcchHHHHHHHHHh------hccchHHHHHHHHHHHHHHHHHH
Confidence 9999999873 233333333 3334445445566666642 23789999999999999988777
Q ss_pred HHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHH
Q 035612 271 LWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTA 350 (534)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~v 350 (534)
..++..+..||++.++ .+ ++..++..+.. ++....+.+.++ ++..+.... .+. .+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~----~~~~~~l~~p~i-il~~i~~g~-------~t~----teaa~~ 243 (416)
T PF06808_consen 185 LMIYVYFIARKPGLPP-EP----RASLKERWRAF----KRAIPALLIPVI-ILGGIYLGI-------FTP----TEAAAV 243 (416)
T ss_pred HHHhHhheeeccccCc-cc----cchHHHHHHHH----HhcchHHHHHHH-HHHHhhhcc-------cch----hhhhhh
Confidence 7666665555433221 11 11111111111 111222333322 222222111 000 012334
Q ss_pred HHHHHHHHHhccCccccccCcccccccc-------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHH
Q 035612 351 SVSCDGNIVVHNSEHEAKGEKLMDWNKC-------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAI 423 (534)
Q Consensus 351 a~l~~~ll~~l~~~~~~~~~~~l~~~~~-------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~ 423 (534)
+++.+.++..+.+ +.++||++ .+..-.+.+++++...+++.++.+|+.+.+++.+..+.+++ +..
T Consensus 244 ~~~~~l~i~~~~~-------~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~~-~~~ 315 (416)
T PF06808_consen 244 AVVYALVIGLFVY-------RRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGSP-WLV 315 (416)
T ss_pred hHHHHHHHHHhhh-------cccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcch-HHH
Confidence 4444444443322 34667664 24456678899999999999999999999999999887656 656
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHH
Q 035612 424 APIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKT 503 (534)
Q Consensus 424 ~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~ 503 (534)
++++.++..++..+++.++...+..|++.++..++|+||..+.+.+.+....+.+||.-.....++.+..+.+..|..|.
T Consensus 316 l~l~~l~~lilG~~m~~~a~~ii~~pi~~P~~~~~Gidpi~~g~~~~~~~~ig~iTPPvgl~lfva~~ia~~~~~~i~~~ 395 (416)
T PF06808_consen 316 LLLIMLILLILGMFMDTTAAIIIVAPILAPIAQALGIDPIHFGVFMFYNAEIGLITPPVGLNLFVAAGIAGVPMEKIFRG 395 (416)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCCCCCccHHHHHHHHHhCCCHHHHHHH
Confidence 66778888888999999999999999999999999999999999999999999999986666666667789999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 035612 504 GLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 504 g~~~~ii~~ii~~~~~~ 520 (534)
.+|+..+......+..+
T Consensus 396 ~~Pf~~~~~~~l~li~~ 412 (416)
T PF06808_consen 396 ILPFIFVLLVALLLITF 412 (416)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998876666555543
No 27
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=99.87 E-value=1.3e-18 Score=180.14 Aligned_cols=372 Identities=15% Similarity=0.143 Sum_probs=236.4
Q ss_pred ChhhHHHHHHHHHH-HhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 035612 88 PMPITSMAPLFLFP-LFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICG 166 (534)
Q Consensus 88 p~~~~al~~~~l~~-l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~ 166 (534)
-.+..+-++..++. .+|.-| + .-+.++++++++.......+++||..|+...++.++.++ ++++..+.+.+
T Consensus 19 ~~g~~g~~g~~~~~~~~~~~~-~----~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~---~~~~~~llipi 90 (430)
T TIGR00770 19 GLGYAGGLGVLILCFGFGLKP-G----KIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRR---NPKYITILAPS 90 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CcchhhhhHHH
Confidence 33444444444443 446544 2 245699999999999999999999999999999888765 46667777888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCC
Q 035612 167 TTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFP 246 (534)
Q Consensus 167 ~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~ 246 (534)
++.++|.+.+|...+..+.|+..++++++|+||. ........++++|+.++++++++|.. .+.++
T Consensus 91 i~~lfs~~~g~~~~~l~f~PI~i~la~~lG~d~i----------~~~ai~~~aa~iG~~as~in~~~~~~-ig~~~---- 155 (430)
T TIGR00770 91 VTYFLTILAGTGHVVYSTLPVIAEVAKEQGIKPE----------RPLSLAVVSSQIAITASPVSAAVVFM-SAILE---- 155 (430)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHHHHhhcccHHHHHH-HHHHH----
Confidence 9999999999988899999999999999999984 24467778999999999997765544 44333
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHh-hcCCCchhHHHHHHHHHHHHHHH
Q 035612 247 EANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELD-MLGPMAFAEKMVLAVFGMLIALW 325 (534)
Q Consensus 247 ~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~e~~~l~~~~~~i~l~ 325 (534)
+.++++.+++.+..|..++.+.+..++..++-++.+++++.++..+.+..+++.+ +..++|+++|..+.+|++.+...
T Consensus 156 -~~Gi~f~~~l~~rip~~~v~l~v~~~~v~~y~~kvkkdP~~~~~~~~~~~~~~~~~~~~~~t~r~k~~l~~f~~~~~~~ 234 (430)
T TIGR00770 156 -PLGIEYLDLLMVTIPSTFLGCMLTAFFVNFFGKKLDKDPEYQERLKAGKIVPTRGKKEKETSKSAKLSVWIFLGGVVAV 234 (430)
T ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhhhhhhhhhcccccccccCCCHhHHHHHHHHHHHHHHH
Confidence 2378999999999999998877766654443333222221111111111111101 12368999999999998877755
Q ss_pred h-hcccCCCCCCcccccccccC-ch---HHHHHHHHHHHhccCccccccCcccccccc-c--CCCchHHHHHHHHHHHHH
Q 035612 326 M-TRSITDDIPGWGALFNDRAG-DG---TASVSCDGNIVVHNSEHEAKGEKLMDWNKC-K--KLPWNIILLLGAGFAIAD 397 (534)
Q Consensus 326 ~-~~~~~~~~~~~~~~~~~~~~-~~---~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~--~v~w~~i~l~~~~~~l~~ 397 (534)
+ .....+..++|+. +.+.+ .. ...+..+++..++.+ ++.+|. + .+--+.-=++.+ +.+++
T Consensus 235 vi~G~~~~~~~~~~~--~~~~~~~~~i~~~fl~~~i~~g~i~~---------~~~~~i~~~~~F~~G~~~~~~~-iG~A~ 302 (430)
T TIGR00770 235 VLYAAAISKRPGFVG--KPILGMDHAIVMFMLSVATLIIIFCK---------IDTDAILKSSVFKSGMQACICV-LGVAW 302 (430)
T ss_pred HHHHhcccccCCCCC--CcccchHHHHHHHHHHHHHHHHHHhC---------CCHHHcccHHHHHHHHHHHHhe-eeehh
Confidence 3 3221111134421 11111 12 122444555555533 222221 1 111111111111 44445
Q ss_pred HHHH---hCHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 035612 398 GVRT---SGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGA 473 (534)
Q Consensus 398 ~l~~---sG~~~~ia~~l~~-l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~ 473 (534)
+++ ....|.+-+.+.. +++.| +.....++++..++. | .+++.. ++.|+++.+|+++.....+..++.
T Consensus 303 -~~~~~~g~i~dtIv~~l~~~l~~~p-~~~a~~mf~~~~~i~---s---QAa~tm-im~PLad~lGi~rq~~Vlafq~gd 373 (430)
T TIGR00770 303 -LGDTFVSNHIDEIKGYAGELIEGYP-WLLAVALFLASMLLY---S---QAATAK-ALIPVALALGVSPYTIVASFAAVS 373 (430)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHh---h---HHHHHH-HHHHHHHHcCCCHHHHHHHHHHhc
Confidence 344 4688888888874 66776 544444444444332 3 333333 588999999999999988888888
Q ss_pred hhhcccCCCCchhhHhhcCCCCCHHHHHHHhHH
Q 035612 474 QFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLP 506 (534)
Q Consensus 474 ~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~ 506 (534)
+. +++|. ++.-+-+.+..++++.+|.|+.++
T Consensus 374 G~-~i~PT-sg~lma~l~~a~i~~~kw~Kfi~~ 404 (430)
T TIGR00770 374 GL-FVLPT-YPTLLAAIQMDDTGTTKIGKFVFN 404 (430)
T ss_pred cc-EEcCC-cHhHhHHHhccCCCcchHHHHHhc
Confidence 76 77777 444455556778999999998877
No 28
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=99.86 E-value=1.3e-18 Score=179.64 Aligned_cols=403 Identities=16% Similarity=0.159 Sum_probs=250.1
Q ss_pred hhcCChhhHHHHHHHHHHHhccCChHHHHh----hhcc---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCC
Q 035612 84 TEAVPMPITSMAPLFLFPLFGISSADTVAH----SYMD---DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMN 156 (534)
Q Consensus 84 ~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~~~~---~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~ 156 (534)
.-++|..+.-++..+...+..-++++|+.+ +|++ ++-+.+..+.+++..+++||..||+|+.+++++|.+
T Consensus 19 k~klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k--- 95 (441)
T PF02447_consen 19 KFKLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEK--- 95 (441)
T ss_pred HHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCC---
Confidence 347888888888888888877788877644 4554 788888999999999999999999999999999864
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHH
Q 035612 157 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLI 236 (534)
Q Consensus 157 ~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i 236 (534)
+..+++.+.++++|.-+-.+....++.|++.+++++.|.+. +.++++.++........+.+.|+.+
T Consensus 96 --~~~~A~~i~g~iv~IPvF~dv~~viL~Pl~~~la~~~~~s~------------~~~~~~l~~gl~~~h~lvPPtPgpl 161 (441)
T PF02447_consen 96 --RAPLALAITGFIVGIPVFFDVGFVILAPLAFSLARKTGKSL------------LYLALPLAAGLSVTHALVPPTPGPL 161 (441)
T ss_pred --cccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHHhhhccCCCCcHH
Confidence 33456777788888766566678999999999999988654 3344444443332222333333443
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhH-HHHHHHHhhcCCCchhHHHHH
Q 035612 237 LVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDK-ANLKRELDMLGPMAFAEKMVL 315 (534)
Q Consensus 237 ~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~e~~~l 315 (534)
+.. +..+.+.+..+.+|++.++...++...+..++.+++.+ .+.++..++ +..+++.++++ +... .+
T Consensus 162 a~a-------~~lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lP--s~~~--s~ 229 (441)
T PF02447_consen 162 AAA-------GALGADLGLVILYGLIVAIPAMLIAGPLYGRFISKRIP-IPPPEISESAEEEETDEKKLP--SFGL--SL 229 (441)
T ss_pred HHH-------HHhCCChhHHHHHhHHHHHHHHHHHHHHHHHHhccCCC-CCCcchhhhhhhhhhcccccc--hHHH--HH
Confidence 332 13467888889999999988776643333333323222 111110000 11111111221 1111 11
Q ss_pred HHHHHHHHHHhhcccCCC-CC--CcccccccccCchHHHHHHHHHHHh--ccCccccccCccccc-ccccCCCchHHHHH
Q 035612 316 AVFGMLIALWMTRSITDD-IP--GWGALFNDRAGDGTASVSCDGNIVV--HNSEHEAKGEKLMDW-NKCKKLPWNIILLL 389 (534)
Q Consensus 316 ~~~~~~i~l~~~~~~~~~-~~--~~~~~~~~~~~~~~va~l~~~ll~~--l~~~~~~~~~~~l~~-~~~~~v~w~~i~l~ 389 (534)
....+-+++...+...+. .+ +.......++++..++++.++++.+ +..++..+.+.+.+| ++--+-.-.+++..
T Consensus 230 ~~illPiiLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLIt 309 (441)
T PF02447_consen 230 LPILLPIILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLIT 309 (441)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 222222223322222110 00 0001122356788888888777543 221011111112222 11124455678889
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHc-CCChHHHHH
Q 035612 390 GAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII-TEFTSNNATTTLVLPLLIQIAKTM-HVHPLLLMV 467 (534)
Q Consensus 390 ~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l-t~f~Sn~a~~~il~Pi~~~la~~~-g~~p~~~~l 467 (534)
+++-++++.+++||+.|.+++.+... +.|+.++. ++++.++ +.-.|.|.+......++.++..+. |+||....+
T Consensus 310 gaGGafg~vl~~sgi~~~i~~~~~~~-~ip~lll~---fliaa~lr~aqGSaTVA~iTaa~I~aPl~~~~~~v~p~l~~l 385 (441)
T PF02447_consen 310 GAGGAFGQVLKDSGIGDAIANLLSGS-GIPPLLLA---FLIAALLRTAQGSATVAMITAAGIVAPLLASLGGVSPVLLVL 385 (441)
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHhc-CCcHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhHHHHHH
Confidence 99999999999999999999988754 35554433 3334444 345788888888888888888888 899977655
Q ss_pred HHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 468 PGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 468 ~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
+ ++++.-...++..+.-.++-++.+++.||-+|.-...+.+..++.......
T Consensus 386 A--igaGs~~~shvNDsgFWlv~~~~g~s~k~tlkt~t~~~~i~~v~g~~~~l~ 437 (441)
T PF02447_consen 386 A--IGAGSMFFSHVNDSGFWLVKRFFGLSVKQTLKTWTVMTTIASVVGLIIVLL 437 (441)
T ss_pred H--HhcCCceeecCCCCceEEEeccccCCHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4 445445677887888788777889999999998877777766666555443
No 29
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=99.85 E-value=1.6e-17 Score=172.92 Aligned_cols=360 Identities=12% Similarity=0.111 Sum_probs=231.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhC
Q 035612 117 DDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMH-NVAAAVIMMPVATGILQNL 195 (534)
Q Consensus 117 ~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~is-n~a~~~i~~Pi~~~i~~~~ 195 (534)
......++.....+..|+++|..|.+.+...+-.++-+ +|+.++..-++++.++|.+++ .......++-+.+++.+++
T Consensus 77 ~~lGl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir-~p~~~l~~~~l~~~~~~~~i~Sa~glg~~lm~~l~Pvl~~~ 155 (455)
T PRK10654 77 GDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYIN-SPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNV 155 (455)
T ss_pred ccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Confidence 45666688888889999999999988887777776543 578888888999999999994 4445577778888889999
Q ss_pred CCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH-HHHHHHHHHHHHHHHH
Q 035612 196 PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC-FGFPLALVIFVALWAI 274 (534)
Q Consensus 196 g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~-~~~p~~li~~~~~~~~ 274 (534)
|.+|. ..-+ ..++..|-...|..+.+|.. .+ ..+++..|++. +.+|..+..+++..+.
T Consensus 156 Gv~~~-----------~aa~-v~~~~~g~~~~P~s~~~~la-A~--------~~g~~~~~~~~~~~~p~~i~~~i~~~i~ 214 (455)
T PRK10654 156 GISRG-----------AAAA-ICASPAAIILSPTSGDVVLA-AE--------ASEMPLIDFAFKTTLPISIAAIIGMAIA 214 (455)
T ss_pred CCCHH-----------HHHH-HHHHHhcccCCCCcchHHHH-HH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99872 2222 24555555666666555543 32 23567777665 4667666666555444
Q ss_pred HHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHH
Q 035612 275 LCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSC 354 (534)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~ 354 (534)
.+++.|..+++++.+++ ++ +.++.... ......+.-++-.+.+.++.+..+ +.+ +...++..
T Consensus 215 ~~~~~~~~dkk~~~~~~--~~----~~~~~~~~-~p~~yallPllPLilll~f~~~~~--~~~---------~v~~~~~~ 276 (455)
T PRK10654 215 HFFWQRYLDKKENISHE--ML----DVSEITTT-APAFYAILPFTPIIGVLIFDGKWG--PQL---------HIITILVI 276 (455)
T ss_pred HHHHhHHHHhhcccccc--cc----ccchhccc-cccHHHHHHHHHHHHHHHHhcccc--hhh---------hHHHHHHH
Confidence 43322221111111111 01 11111110 112233333333333332333211 000 11121222
Q ss_pred HHHHHhccCccccccCcccccccc-cCCCc----------hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHH
Q 035612 355 DGNIVVHNSEHEAKGEKLMDWNKC-KKLPW----------NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAI 423 (534)
Q Consensus 355 ~~ll~~l~~~~~~~~~~~l~~~~~-~~v~w----------~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~ 423 (534)
+.+...+-+ ..+..++||. +.+.+ +++.++.++..++++++.+|+.+.+.+.+...+.++ +.+
T Consensus 277 s~~i~~~~~-----~~r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~lg~~~-~~i 350 (455)
T PRK10654 277 CMLLAAVLE-----FLRSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSFGSAG-IIL 350 (455)
T ss_pred HHHHHHHHH-----HHhCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCh-HHH
Confidence 222111110 0134566663 44444 588999999999999999999999999998875544 444
Q ss_pred HHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHH
Q 035612 424 APIVCLISAIITEFT-SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIK 502 (534)
Q Consensus 424 ~~~~~~~~~~lt~f~-Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k 502 (534)
.+++.+++.+.+..+ |+.++..++.|++.++|.++|.||..+..++..+++++..+|.-++.-.++.+.++++..|.+|
T Consensus 351 llv~~il~~l~~~~~GSg~a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPvs~~ii~~ag~a~~~~~~ivK 430 (455)
T PRK10654 351 MLVLVILTMLAAITTGSGNAPFYAFVELIPKLAHSSGINPAYLTIPMLQASNLGRTISPVSGVVVAVAGMAKISPFEVVK 430 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcchhhHhhhhcccCCCHHHHHH
Confidence 446667777777775 9999999999999999999999999999999999999966665455555566788999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 035612 503 TGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 503 ~g~~~~ii~~ii~~~~~~~~ 522 (534)
.+.+..+++.++..+..+.+
T Consensus 431 rt~ip~ii~~iv~~i~~~~~ 450 (455)
T PRK10654 431 RTSVPVLVGLLIVIVATEIM 450 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 98888887777776665553
No 30
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=99.84 E-value=5e-18 Score=174.33 Aligned_cols=361 Identities=12% Similarity=0.006 Sum_probs=226.6
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Q 035612 109 DTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAA-VIMMPV 187 (534)
Q Consensus 109 ~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~-~i~~Pi 187 (534)
++.+++-..++-.+++.....+..|++.|+.|.+.+.+.|..++- .+|..+..+..+++.+++..++..++. .+.+|.
T Consensus 12 ~~~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~-~~p~~v~~~t~~i~~~~~l~~~sat~~~li~~~~ 90 (388)
T TIGR00771 12 LRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLI-RSPYIILSATYVIGQIMAQFITSASGLGMLLMVT 90 (388)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 344455555888888999999999999999999999999998821 168888899999999999999555555 999999
Q ss_pred HHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHH-HHHHHHH
Q 035612 188 ATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCF-GFPLALV 266 (534)
Q Consensus 188 ~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~-~~p~~li 266 (534)
..++.++.|++|. ...++ .+++.+-...|.+.+.+..+. ..+.+..+++.. -+|..+.
T Consensus 91 l~P~l~~~G~~~~-----------~aaav-ia~~~~l~i~P~~~~~~~aa~---------~~~~~~~~~~~~~~ip~~i~ 149 (388)
T TIGR00771 91 LFPTLVSLGVSRL-----------SAVAV-MASPGSIHSAMISEMSGLAAQ---------QVNMSHAPYNFHYMLPGAIG 149 (388)
T ss_pred HHHHHHHcCCCHH-----------HHHHH-HHhhhcccCCCcchHHHHHHH---------HhCCCHHHHHHHhHHHHHHH
Confidence 9999999999872 11122 222212233344433322221 136788885554 4444444
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCC-CCCccccccccc
Q 035612 267 IFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDD-IPGWGALFNDRA 345 (534)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~~ 345 (534)
.++... ...+++++++++++.. ..++..++ ++. +-+++-.+....+...+++.+..+.... .+...
T Consensus 150 ~i~~~~-~~~~~~~k~~~kr~~~--~~~~~~~~--~~~-~~~~~~~~allpl~p~iil~l~~g~~t~~~~~~~------- 216 (388)
T TIGR00771 150 AIILTA-IAHFFKQRGEDKKQAY--IAHEKESE--IKV-IEGVPVLYAILPLIPLIILLLFIGGTGLQQVPLH------- 216 (388)
T ss_pred HHHHHH-HHHHHHhcccchhccc--cccccccc--chh-hcccchHHHHHHHHHHHHHHHHhccccccCCCcc-------
Confidence 444433 3344443332221100 00111100 111 1111112333222222222232221000 00000
Q ss_pred CchHHHHHHHHHHHhccCccccccCcccccccc-----------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh
Q 035612 346 GDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-----------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDF 414 (534)
Q Consensus 346 ~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-----------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~ 414 (534)
....+++..++.+.+.-. +..|+++. .+..-.+++++.++..+++.++.+|+.|.+++.+..
T Consensus 217 ~~~~v~v~~~~~l~~~~~-------r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~ 289 (388)
T TIGR00771 217 EWTKMGVPQAMLIGAEFG-------RIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKE 289 (388)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 001122222112211111 12233332 234455788999999999999999999999999988
Q ss_pred hccccHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCC
Q 035612 415 LEAAPYLAIAPIVCLISAIITEFT-SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTG 493 (534)
Q Consensus 415 l~~~~~~~~~~~~~~~~~~lt~f~-Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g 493 (534)
.+ .+++...+++.+...+++.++ |+++...++.|++.++++++|+||..+.+++.++.+.+..+|.-++...++.+..
T Consensus 290 ~~-~~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~~~l~v~~gia 368 (388)
T TIGR00771 290 SG-LGNIFVMWGATIGPFLMALITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIAGVVVVCAGLA 368 (388)
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHHHHHHHHHhhc
Confidence 74 455555556667777788888 7899999999999999999999999999999999999988877667777777888
Q ss_pred CCCHHHHHHHhHHHHHHHH
Q 035612 494 HIEIQDMIKTGLPLKIAGI 512 (534)
Q Consensus 494 ~~~~~~~~k~g~~~~ii~~ 512 (534)
+++..|.+|..+|..+.+.
T Consensus 369 ~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 369 MVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999887654
No 31
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.83 E-value=2.7e-17 Score=168.88 Aligned_cols=392 Identities=15% Similarity=0.213 Sum_probs=232.1
Q ss_pred hhhHHHHHHHHHH-HhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 035612 89 MPITSMAPLFLFP-LFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGT 167 (534)
Q Consensus 89 ~~~~al~~~~l~~-l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~ 167 (534)
.+..+-++...+. .+|.-|.+ -..|++++++..+..++++++||..|++.+++.++.++ ++++..+ +...
T Consensus 24 ~g~~gg~g~~il~~~~~~~p~~-----~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk---~pk~i~l-lap~ 94 (443)
T PRK12489 24 LGLLGGIGLVILVFVFGLPPGK-----PPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRR---NPKYITI-LAPF 94 (443)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----CcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc---ChhHHHH-HHHH
Confidence 3444444444444 45654433 36699999999999999999999999999998887765 5676666 5555
Q ss_pred HHHHHHhhhhHH-HHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCC
Q 035612 168 TAFVSMWMHNVA-AAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFP 246 (534)
Q Consensus 168 ~~~lS~~isn~a-~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~ 246 (534)
.+.++.+++||+ +++.+.|++..++++.|.+|+ | .+....+++.+|..++|++...|.++. .+++.
T Consensus 95 vt~l~afl~~Tg~~v~~~lPVi~~vA~k~gi~Ps---------r-pLa~as~As~lGi~aSpin~~v~~l~~-~l~~~-- 161 (443)
T PRK12489 95 VTYTLTFLCGTGHVVYSILPIIYDVALKNGIRPE---------R-PMAAASVASQMGITASPVSAAVVSLVA-MLGNV-- 161 (443)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHcCCChh---------h-hHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhc--
Confidence 666668889997 689999999999999999985 3 466777888888888888777776654 55554
Q ss_pred CC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHH-----HHhhc-CCCchhHHHHHHHH
Q 035612 247 EA--NPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKR-----ELDML-GPMAFAEKMVLAVF 318 (534)
Q Consensus 247 ~~--~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l-g~~~~~e~~~l~~~ 318 (534)
++ .++++.|....++|..++..++..++.+++-|+-+++++.++...++..++ +.+++ .+.+++.|..+.+|
T Consensus 162 ~~~~~g~~~f~il~VgIP~~~ig~l~~~l~~~~~gk~l~~Dp~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~ak~sv~iF 241 (443)
T PRK12489 162 TGEGRHITLLDILAVTIPATLIGVLAAALWSLRRGKDLDKDPEFQERLKDPEFREYVYGTTATLLDKKLPKSAKLAVWIF 241 (443)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHhhccccccccccccccccccCCChhHHHHHHHH
Confidence 23 689999999999999999988887776655444333322111101111111 11111 25678889888888
Q ss_pred HHHHHHHh-hcccCCCCCCcccccccccCch----HHHHHHHHHHHhccCccccccCcccccccccCCCchHHHHHHHHH
Q 035612 319 GMLIALWM-TRSITDDIPGWGALFNDRAGDG----TASVSCDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGF 393 (534)
Q Consensus 319 ~~~i~l~~-~~~~~~~~~~~~~~~~~~~~~~----~va~l~~~ll~~l~~~~~~~~~~~l~~~~~~~v~w~~i~l~~~~~ 393 (534)
++.++..+ ........|+|+. +. +... .+-+..+.+..++.+.+. .++.+-+.+++-.-..+. +.|.-
T Consensus 242 l~~i~~vv~~g~~~~~~~~~~~--~~-l~~~~~i~~~mL~~a~~i~l~~k~~~---~~i~~~~vF~sGm~a~v~-I~GiA 314 (443)
T PRK12489 242 LAAIAVVVLLAAFSELRPSFGG--KP-LSMVLVIQMVMLLTGALILILTKTDP---ASISNGEVFKSGMIAIVA-IFGIA 314 (443)
T ss_pred HHHHHHHHHHHhcccccCCCCC--Cc-CChHHHHHHHHHHHHHHHHHHcCCCH---HHhccchhhHHHHHHHHH-HhhHH
Confidence 87776655 3222122355632 11 1111 112333444444433110 011111111111112222 22222
Q ss_pred HHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 035612 394 AIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIG 472 (534)
Q Consensus 394 ~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~ 472 (534)
-+++.+= .+..|++.+.+... ++. +|...+.+++.+.++. |+.+++.++.| ++..+|++|..+ ++. +.
T Consensus 315 w~~~t~~-~~~~~~i~~~~~~~v~~~-pw~~Av~mf~~s~ll~---sQAAt~~il~P----l~~~LGi~~~~~-~a~-~~ 383 (443)
T PRK12489 315 WMSDTFF-GAHMPELKEVLGEMVKEY-PWTYAIVLFLVSKFVN---SQAATLAAIVP----VGLALGLDPALL-VAS-MP 383 (443)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh---hHHHHHHHHHH----HHHHcCCCHHHH-HHH-HH
Confidence 2222222 45677888887753 444 6666666666666654 77776666555 567899999774 333 33
Q ss_pred Hhhh-cccCCCCchhhHhhc---CCCCCHH------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035612 473 AQFS-FLLPTGTPSNIVGFT---TGHIEIQ------DMIKTGLPLKIAGIAAMAFLMPTLGAY 525 (534)
Q Consensus 473 ~~~~-~~~P~~~~~n~i~~~---~g~~~~~------~~~k~g~~~~ii~~ii~~~~~~~~~~~ 525 (534)
+..+ |.+|. +|+-.-+.+ +|.-+.. .|+..| +++....+.+.+.++..
T Consensus 384 a~~~~f~~p~-ypt~~aai~~d~tgtt~igk~~~nhsf~~pg----~~~~~~~~~~g~~~~~~ 441 (443)
T PRK12489 384 ACYGYFFLPT-YPSDLAAINFDRTGTTRIGKFVINHSFILPG----LIGVSVSCVFGYILAAI 441 (443)
T ss_pred HHheeEEccC-CcCceeEEEecCCCCccccceeecCcccccc----HHHHHHHHHHHHHHHHH
Confidence 3345 77776 666544433 3333332 344444 44455555555555543
No 32
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=99.82 E-value=2.5e-18 Score=166.56 Aligned_cols=405 Identities=17% Similarity=0.141 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCC---hHHHH-hhhcc--hHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 74 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISS---ADTVA-HSYMD--DVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 74 i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~---~~~v~-~~~~~--~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
.......+..++++...+.-.+....+.+.+-.. -.+.+ ++..+ ++..+++.+......+.++|+.|.+.++++
T Consensus 9 mi~~fm~Lim~kk~sp~iAli~vPiv~ALi~gfgv~~lg~m~~~Gi~~va~t~imlmFAILfFgIM~DsGLFdPli~~il 88 (433)
T COG2851 9 MIIVFMWLIMTKKLSPIIALILVPIVFALIAGFGVTGLGEMMLDGIKSVAPTAIMLMFAILFFGIMIDSGLFDPLIRKIL 88 (433)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3344445556777765555555555555443333 22222 23333 677777778888899999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
+..+++ |..+..+..+++++.|-=-+.+.+..+..|-..++.|++|.+| ..+.+-+..++.+-. .+
T Consensus 89 ~~~kgd---p~kV~igTavla~~v~LDGdGatTflIti~A~LPlYkrLgmn~----------~~l~~l~~ls~gvmN-~~ 154 (433)
T COG2851 89 SIVKGD---PVKVVIGTAVLAAVVSLDGDGATTFLITIPALLPLYKRLGMNP----------YLLALLATLSAGVMN-ML 154 (433)
T ss_pred HHhcCC---ceeeeHHHHHHHHHhhccCCCceEEEeeHHhHhHHHHHcCCcH----------HHHHHHHHHhhhhee-cC
Confidence 999874 5554444444444444333555666889999999999999987 222222233333332 67
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---Ccchhhhh--HHHHHHHHh
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSG---PALSEYLD--KANLKRELD 302 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~ 302 (534)
|.|.|+.-.+. .-+.+-.|.+..-+|..+..++....+.+++-++|+++ .+.+++.. .+..+++.+
T Consensus 155 PWGGPt~Raas---------~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~ 225 (433)
T COG2851 155 PWGGPTARAAS---------VLGVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERKRLGVIDLSEELEQLVELSEEDQE 225 (433)
T ss_pred CCCCcHHHHHH---------HhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhhhhccccCCchhh
Confidence 88988865554 33667888899999988888777666555544444321 11111000 001111111
Q ss_pred hcCCCchhHHHHH--HHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccccC
Q 035612 303 MLGPMAFAEKMVL--AVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKK 380 (534)
Q Consensus 303 ~lg~~~~~e~~~l--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~~~ 380 (534)
+ .+|+|..- .++.+.+..+...+. . ......+++..+.+.+.....+++++++..+.-+.
T Consensus 226 ~----~~rpkl~W~N~lLtl~lm~~Lv~gi---~-----------p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~na 287 (433)
T COG2851 226 E----LKRPKLFWFNLLLTLALMGLLVSGI---F-----------PPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNA 287 (433)
T ss_pred h----hhccHHHHHHHHHHHHHHHHHHhcc---c-----------chhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcch
Confidence 1 12333222 222233334443222 1 23445555555555554422233322222221122
Q ss_pred CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 035612 381 LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL--EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTM 458 (534)
Q Consensus 381 v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l--~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~ 458 (534)
+. +..++.++-.+-+.++.||..|.+++.+... ....++.- +++.+++.-++.|+||++.---.+|++.+.+.+.
T Consensus 288 l~--vvs~i~AAGif~Gil~gtgMvdama~si~~vIP~~lgpyl~-~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~y 364 (433)
T COG2851 288 LM--VVSLIFAAGIFLGILSGTGMVDAMAKSIVSVIPDALGPYLP-LIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAY 364 (433)
T ss_pred hH--HHHHHHHHHHHhhhhCCCchHHHHHHHHHHhCcHhhcchHH-HHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHc
Confidence 22 3344444555668999999999999987642 22333332 3566777777889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 459 HVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 459 g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
|++|...+.+..++....+++|. .|......|..+++++|+.|+.+.......+++.......|
T Consensus 365 Gv~pv~~A~AsiiGq~vh~lSPl-vPat~LlvgLa~v~~gdh~k~a~~wa~~~siv~l~~ai~~G 428 (433)
T COG2851 365 GVEPVEIARASIIGQPVHFLSPL-VPATYLLVGLAKVDMGDHQKFALKWAWGISIVMLAIAILMG 428 (433)
T ss_pred CCCHHHHHHHHHhCCcceeeccc-hHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988888888899999 68888888888999999999988887766666555544443
No 33
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=99.82 E-value=9.8e-17 Score=172.35 Aligned_cols=352 Identities=13% Similarity=0.046 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCCcch
Q 035612 124 LGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVPLQS 202 (534)
Q Consensus 124 ~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~ 202 (534)
....+.+..++++|+.||+.+.....+|+.+.++.. .-.+.++++++.. |..|.++....+.++.+||.|++++
T Consensus 172 ~lFil~G~ll~~~G~~~~li~~a~~l~G~~rGGla~---vaV~as~lfg~iSGS~~A~va~~G~itiP~Mkk~GY~~~-- 246 (613)
T TIGR02123 172 FLFILFGAFLQKSGVGKFFIDLAFALAGKRRGGPAK---VAVISSGLMGMISGSSVANVVTTGSFTIPLMKRAGYKPE-- 246 (613)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 334566799999999999998888888875544443 4445667777776 8888999999999999999999873
Q ss_pred hhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 035612 203 TLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSR 282 (534)
Q Consensus 203 ~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~ 282 (534)
..-++-.+++.+|...|...+...++++. ..++|+.+.+..++.++++..........+..||+
T Consensus 247 ---------~Aaav~AaastlG~iiPPsmg~~afi~a~-------~~~vs~~~lf~AgiiPgll~~~~l~~~v~~~a~k~ 310 (613)
T TIGR02123 247 ---------FAGAVEAAASTGGQIMPPIMGAAAFIMAE-------FLGIPYTEIIIAAIIPALLYFFGVFMQVHLEAKKQ 310 (613)
T ss_pred ---------HHHHHHHHhhhcccccCchHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555666555433333334432 24789999999999999988777666666555543
Q ss_pred CCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHh-hcccCCCCCCcccccccccCchHHHHHHHHHHHhc
Q 035612 283 GSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWM-TRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVH 361 (534)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l 361 (534)
+.+ +.+ ++..++..+.+ ++...+.+-+ .++..+ .... -|. +.+.+++..++++..+
T Consensus 311 ~~~-~~~----~~~~~~~~~~~-----~~~~~lllPv-ivL~~il~~g~---Tpt---------eAa~~a~~~al~v~~~ 367 (613)
T TIGR02123 311 GLK-GLS----KEQLPSPKTVL-----KAGWYLLIPL-VLLIVLLLVGY---SPI---------RAAFYSIALTLIVSLL 367 (613)
T ss_pred CCC-CCC----chhhHHHHHHH-----HHHHHHHHHH-HHHHHHHHcCc---CHH---------HHHHHHHHHHHHHHHH
Confidence 321 111 11111111111 1222222111 122222 2111 010 1233444444444333
Q ss_pred cCccccccCcccccccc-------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 035612 362 NSEHEAKGEKLMDWNKC-------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII 434 (534)
Q Consensus 362 ~~~~~~~~~~~l~~~~~-------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l 434 (534)
.+ ..+.++|+++ .+..-.+.+.+++...+++.++.+|+.+.+++.+..+++.+++..++++.++..++
T Consensus 368 ~~-----~~r~l~~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lil 442 (613)
T TIGR02123 368 SR-----KDTRMGLGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIIL 442 (613)
T ss_pred HH-----hccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 10 0134666654 24556778888999999999999999999999999887657777777888888899
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 435 TEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 435 t~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
.++++.+++..++.|++.|...++|+||..+.+.+.+....+.+||.-......+.+..+.+..|..|..+++.+...++
T Consensus 443 Gm~l~~~a~~ii~~pi~~P~l~~lGidpi~~~~~v~~~~~ig~iTPPvgl~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~ 522 (613)
T TIGR02123 443 GMGLPTTANYIITATLAAPALIALGVPPIAAHMFVFYFGILADITPPVALAAFAAAGIAGADPMKTGFEAFKLALAGYLV 522 (613)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888889999988655556666677889999999999999988887
Q ss_pred HHHHHHHHHH
Q 035612 515 MAFLMPTLGA 524 (534)
Q Consensus 515 ~~~~~~~~~~ 524 (534)
..++.+...-
T Consensus 523 ~~l~~~~P~l 532 (613)
T TIGR02123 523 PFMFVYNPAL 532 (613)
T ss_pred HHHHHHhHHH
Confidence 7776665543
No 34
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=99.82 E-value=1.4e-16 Score=163.62 Aligned_cols=408 Identities=14% Similarity=0.061 Sum_probs=247.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhh-------cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 035612 76 AWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY-------MDDVIALVLGSFILALAVEHYNIHKRLALNITI 148 (534)
Q Consensus 76 ~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~-------~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~ 148 (534)
+..+++.+.-++|..+..++..+...+++-++.+++.+.+ ..+...++..+-+++..+++||..+|+|+.+++
T Consensus 11 ~~ll~li~k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~ 90 (438)
T PRK14984 11 ALLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIA 90 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4455555667788888888888888888888877775533 337888889999999999999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccccc
Q 035612 149 LFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 228 (534)
Q Consensus 149 ~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~ 228 (534)
++|++ +..+++.+.+++++.-+.-+....++.|++.+++||.|.+. +.+..++..+.... ....
T Consensus 91 ~~G~k-----r~~~a~~l~~~il~ipvF~dv~fvil~Pi~~~lak~~~~~~----------~~~~~~l~~gl~~t-h~~v 154 (438)
T PRK14984 91 KFGKK-----HIQWAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPL----------LYVGVPMAAALSVT-HGFL 154 (438)
T ss_pred HhCcc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCcCh----------HHHHHHHHHHHHHH-HhCC
Confidence 99863 45567777777777545555566799999999999988764 22333333332222 2222
Q ss_pred ccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCC
Q 035612 229 TGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA-LWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPM 307 (534)
Q Consensus 229 ~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 307 (534)
.++|..+.+.+ ..+.+.+..+.+|+++++...++ .+++.. +.+++.. +.+++..+++.. +.+++++.
T Consensus 155 PP~Pgpla~a~--------~lgadlG~~il~Glivaip~~~i~g~~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~Ps~ 222 (438)
T PRK14984 155 PPHPGPTAIAT--------IFNADMGKTLLYGTILAIPTVILAGPVYAR-FLKGIDK--PIPEGLYSAKTF-TEEEMPSF 222 (438)
T ss_pred CCCCcHHHHHH--------HhCCCHHHHHHHhHHHHHHHHHHHHHHHHH-HhccCCC--CCChhhcccccc-cccCCCCh
Confidence 33443334443 34678888999999999887443 444433 2222111 111100000000 11122221
Q ss_pred chhHHHHHHHHHHHHHHHhhcccCCC-CC-C-cccccccccCchHHHHHHHHHHHhccC-cc-ccccCccccc-ccccCC
Q 035612 308 AFAEKMVLAVFGMLIALWMTRSITDD-IP-G-WGALFNDRAGDGTASVSCDGNIVVHNS-EH-EAKGEKLMDW-NKCKKL 381 (534)
Q Consensus 308 ~~~e~~~l~~~~~~i~l~~~~~~~~~-~~-~-~~~~~~~~~~~~~va~l~~~ll~~l~~-~~-~~~~~~~l~~-~~~~~v 381 (534)
...+...++-+++....+..+. .+ + +-...-.++++..++++.++++....- .+ .++.+.+.+| +|--+-
T Consensus 223 ----~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~f~G~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~ 298 (438)
T PRK14984 223 ----GVSVWTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKI 298 (438)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 2222222333333333222111 01 1 100112345788899888877654211 01 1111122221 111233
Q ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHcCC
Q 035612 382 PWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII-TEFTSNNATTTLVLPLLIQIAKTMHV 460 (534)
Q Consensus 382 ~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l-t~f~Sn~a~~~il~Pi~~~la~~~g~ 460 (534)
.-.+++..+++-+++..+++||+.|.+++.++.. +.|+..+. ++++.++ ....|.|.+...-..++.++....|+
T Consensus 299 ~g~IlLI~gaGGafg~VL~~sgi~~~i~~~l~~~-~l~~llla---fliaallr~aqGSaTVA~itaa~I~ap~l~~~~~ 374 (438)
T PRK14984 299 IAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHET-NISPLLMA---WSIAAVLRIALGSATVAAITAGGIAAPLIATTGV 374 (438)
T ss_pred HHHHHHHHcChHHHHHHHHhCCHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccCc
Confidence 4456788888899999999999999999998754 45654433 3333333 24477777766666666666555688
Q ss_pred ChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 461 HPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 461 ~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
||....++ ++++.....++..+.-.++-++-+++.+|-+|.-...+.+..++.......
T Consensus 375 ~p~~~~lA--i~aGs~~~shvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~v~gl~~~~i 433 (438)
T PRK14984 375 SPELMVIA--VGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLL 433 (438)
T ss_pred cHHHHHHH--HhCCCceeeeCCCCcchhhhhhcCCCHhhhheeehHHHHHHHHHHHHHHHH
Confidence 88776554 455555677887888888888888999999998777666666555544443
No 35
>PRK10472 low affinity gluconate transporter; Provisional
Probab=99.81 E-value=2.4e-16 Score=162.52 Aligned_cols=404 Identities=12% Similarity=0.056 Sum_probs=249.7
Q ss_pred HHHHHHhh-cCChhhHHHHHHHHHHHhccCChHHHHhhh----c---chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 78 VFAWWLTE-AVPMPITSMAPLFLFPLFGISSADTVAHSY----M---DDVIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 78 ~i~~w~~~-~ip~~~~al~~~~l~~l~gi~~~~~v~~~~----~---~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
.++..+.+ ++|..+..++..+++.++.-++.++..+.+ . ......+..+.+++..+|+||..||+++.+.++
T Consensus 16 ~li~li~k~kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~ 95 (445)
T PRK10472 16 LLLFLVMKARMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKS 95 (445)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33344455 889999999888888888778777765544 2 245567888889999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccc
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLT 229 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~ 229 (534)
+|+ +|..+++.+.+++++.-+-.+....++.|++.+++|+.|.+. +.++++.++........+
T Consensus 96 fG~-----kr~~~A~~l~g~iv~iPvF~dv~fvil~Pl~~~la~~~~~s~------------~~~~~~l~~gl~~~H~~v 158 (445)
T PRK10472 96 FGH-----SRAHYAIGLAGLICALPLFFEVAIVLLISVAFSMARHTGTNL------------VKLVIPLFAGVAAAAAFL 158 (445)
T ss_pred cCc-----ccHHHHHHHHHHHHhhHHHHhhHHHHhHHHHHHHHHHHCCCh------------HHHHHHHHHHHHhccccc
Confidence 985 356678888888888878777888999999999999988765 334444444433333344
Q ss_pred cchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCc
Q 035612 230 GTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA-LWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMA 308 (534)
Q Consensus 230 g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 308 (534)
.+.|+.++.. +.-+.+.+..+.+|+++++...++ .+++.. +..++.+. +.+++. ++ .+++.+++++.
T Consensus 159 PP~Pgp~a~a-------~~l~adlG~~il~Glivaip~~~i~g~~~~~-~~~~~~~~-~~~~~~-~~-~~~~~~~~Ps~- 226 (445)
T PRK10472 159 LPGPAPMLLA-------SQMNADFGWMILIGLCAAIPGMIIAGPLWGN-FISRYVEL-HIPDDI-SE-PHLGEGKMPSF- 226 (445)
T ss_pred CCCcHHHHHH-------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCC-CCCchh-hh-hcccccCCCCh-
Confidence 4444554442 234677888899999999887555 555443 33332111 111111 11 11121222221
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCCC-CC--CcccccccccCchHHHHHHHHHHHh--c-cCccccccCccccc-ccccCC
Q 035612 309 FAEKMVLAVFGMLIALWMTRSITDD-IP--GWGALFNDRAGDGTASVSCDGNIVV--H-NSEHEAKGEKLMDW-NKCKKL 381 (534)
Q Consensus 309 ~~e~~~l~~~~~~i~l~~~~~~~~~-~~--~~~~~~~~~~~~~~va~l~~~ll~~--l-~~~~~~~~~~~l~~-~~~~~v 381 (534)
...+....+-+++....+..+. .+ +....+-.++++..++++.++++.+ + .+ +.+..+.+.+| ++.-+-
T Consensus 227 ---~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~lg~~-~~~~~~~~~~~~~~al~~ 302 (445)
T PRK10472 227 ---GFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLVAIYGLAMR-QGMPKDKVMEICGHALQP 302 (445)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHhCChHHHHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHh
Confidence 2333333333333333332111 11 1111122356788899988877654 2 11 11111222222 121123
Q ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHc--
Q 035612 382 PWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII-TEFTSNNATTTLVLPLLIQIAKTM-- 458 (534)
Q Consensus 382 ~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l-t~f~Sn~a~~~il~Pi~~~la~~~-- 458 (534)
.-.+++..+++-++++.+++||+.|.+++.++.. +.|+..+.+ +++.++ ....|.|++...-..++.++..+.
T Consensus 303 ~g~ilLItGaGGafg~vL~~sgig~~l~~~~~~~-~~p~lllaf---lia~~lr~a~GSaTVA~iTaa~i~apll~~~~~ 378 (445)
T PRK10472 303 AGIILLVIGAGGVFKQVLVDSGVGPALGEALTGM-GLPIAITCF---VLAAAVRIIQGSATVACLTAVGLVMPVIEQLNY 378 (445)
T ss_pred hhHhheeecChHHHHHHHHHCCHHHHHHHHHHhC-CCcHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788888999999999999999999998765 456544333 333333 244677777666666666665544
Q ss_pred -CCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 035612 459 -HVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 459 -g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~ 520 (534)
+++|... .++++++.-...++....-.++-++-+++.+|-+|.-.+.+.+.-++..+...
T Consensus 379 ~~~~~~l~--~lAi~aGs~~~shvNDsgFW~v~~~~gl~~~~tlkt~t~~~ti~~~~~~~~~~ 439 (445)
T PRK10472 379 SGAQMAAL--SICIAGGSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGM 439 (445)
T ss_pred CchhHHHH--HHHHhCCCceeccCCCCcchhhhhhcCCCHHhhhheehHHHHHHHHHHHHHHH
Confidence 3444333 34555555577788777778887888999999999877776666555544443
No 36
>PRK09821 putative transporter; Provisional
Probab=99.81 E-value=1.3e-16 Score=164.78 Aligned_cols=414 Identities=13% Similarity=0.037 Sum_probs=248.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh----h---hcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 75 LAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH----S---YMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 75 ~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~---~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
++..+++.+..+++..+..++..+...+++-++.+++.+ + +..+...++..+.+++..+|+||..||+++.++
T Consensus 14 i~~l~~li~k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii 93 (454)
T PRK09821 14 VILLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFT 93 (454)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555666778888888888888888877777776644 3 333788888999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcc-cc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGG-MS 226 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg-~~ 226 (534)
+++|++ +..+.+.+.+++++.-+.-+.+..++.|++.+++||.|.++ +.+.++++.+.+... +.
T Consensus 94 ~~~G~k-----~~~~ai~i~~~ilgIpvF~dv~fvil~Pl~~~l~kk~~~~~----------~~l~l~~~~~l~~~h~~v 158 (454)
T PRK09821 94 RKLGDK-----RTIAALTLAAFILGIPVFFDVGFIILAPIIYGFAKVAKVSP----------LKFGLPVAGIMLTVHVAL 158 (454)
T ss_pred HHhCCC-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCcCH----------HHHHHHHHHHHHHccccc
Confidence 999863 34457777888887655555667899999999999988765 223333332222222 23
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcchhhhhHHH---HHHH--
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGS-GPALSEYLDKAN---LKRE-- 300 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~-- 300 (534)
.|.+.|.|. .+ .-+.+.+....+|++.++...+..+++..+..|+.++ +.+..++.+.++ .+++
T Consensus 159 PP~Pgp~~~--a~--------~Lg~d~g~~~l~Giivaip~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (454)
T PRK09821 159 PPHPGPVAA--AG--------LLHADIGWLTIIGIAISIPVGIVGYFAAKIINRRQYALSVEVLEQMQLAPASEEGATKL 228 (454)
T ss_pred CCChHHHHH--HH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhcccc
Confidence 344444443 22 2356777888999999998877777766544443221 111001001111 1110
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHhhcccCCC-CC--CcccccccccCchHHHHHHHHHHHhc-cCccc-cccCccccc
Q 035612 301 LDMLGPMAFAEKMVLAVFGMLIALWMTRSITDD-IP--GWGALFNDRAGDGTASVSCDGNIVVH-NSEHE-AKGEKLMDW 375 (534)
Q Consensus 301 ~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~-~~--~~~~~~~~~~~~~~va~l~~~ll~~l-~~~~~-~~~~~~l~~ 375 (534)
.++.+..+. ...+....+-+++.......+. .+ ++....-.++++..++++.++++.+. -+.+. +.++.+.+|
T Consensus 229 ~~~~~~P~~--~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~fiG~p~iALlig~l~A~~~lg~~~~~~~~~~~~~ 306 (454)
T PRK09821 229 SDKINPPGA--ALITSLIVIPIAIIMLGTVSATLLPPSHPLLGTLQLIGSPMVALLIALVLAFWLLALRRGWSLQHTSDV 306 (454)
T ss_pred ccccCCCCc--HHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCcHHHHHHH
Confidence 111111111 2223222222333332222110 11 11111223567888999888776542 11011 111112222
Q ss_pred -ccccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHH
Q 035612 376 -NKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII-TEFTSNNATTTLVLPLLIQ 453 (534)
Q Consensus 376 -~~~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l-t~f~Sn~a~~~il~Pi~~~ 453 (534)
++.-+-.-.+++..+++-++++.++++|+.|.+++.+... +.|+.++. ++++.++ ....|.|.+...-..++.+
T Consensus 307 ~~~al~~~g~IlLItgaGGafg~VL~~sgig~~i~~~~~~~-~l~~lll~---flIAa~lr~aqGSaTVA~iTaa~i~ap 382 (454)
T PRK09821 307 MGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMI-HLPLIPAA---FIISLALRASQGSATVAILTTSGLLSE 382 (454)
T ss_pred HHHHHHhhhHhheeecChHHHHHHHHHCCHHHHHHHHHHhC-CCcHHHHH---HHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 1112345567778888999999999999999999998764 35554433 3333333 3457777766655556555
Q ss_pred HHHH-cCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 454 IAKT-MHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 454 la~~-~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
+... -+.+|... .++++++.-...++..+.-.++-++-+++.+|-+|.-...+.+..++.......
T Consensus 383 ~~~~~~~~~~~l~--~lAi~aGs~~~ShvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~~~gl~~~~i 449 (454)
T PRK09821 383 AVMGLNPIQCVLV--TLAACFGGLGLSHVNDSGFWIVTKYLGLSVADGLKTWTVLTTILGLTGFLITWC 449 (454)
T ss_pred HhccCCCccHHHH--HHHHhcCcceeeecCCCcceehhhhcCCCHhhhheeeeHHHHHHHHHHHHHHHH
Confidence 5431 24555544 345566555778888888888888888999999998666666655555444433
No 37
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=99.81 E-value=5.6e-18 Score=177.80 Aligned_cols=189 Identities=20% Similarity=0.287 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHHhccC-ChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 035612 70 NMLGVLAWVFAWWLTEAVP---MPITSMAPLFLFPLFGIS-SADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALN 145 (534)
Q Consensus 70 ~~l~i~~~~i~~w~~~~ip---~~~~al~~~~l~~l~gi~-~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~ 145 (534)
..+.+++.++..|.++..| .+.++++...++...+.. +++|+.+.+.|++++++.|++.++.+++++|+.||++++
T Consensus 219 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~ 298 (413)
T cd01116 219 KSLTILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIAEL 298 (413)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4466778888888888654 788888888888888886 999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccc
Q 035612 146 ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGM 225 (534)
Q Consensus 146 i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~ 225 (534)
+.+..++ ++......++.++.++|.++||+++++++.|++.+++++.|.+| +.+.+++++++|+|+.
T Consensus 299 l~~~~~~---~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~----------~~~~~~~~~~a~~g~~ 365 (413)
T cd01116 299 LVGVILG---RIAVAVILILWISALLSAFIDNIPVTATMIPIVKDLASQLGIPL----------LPLWWALALGACLGGN 365 (413)
T ss_pred HHHHhCC---ChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCc----------hHHHHHHHHHHhcccc
Confidence 9998876 35556667888999999999999999999999999999999887 5688999999999999
Q ss_pred cccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035612 226 STLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAI 274 (534)
Q Consensus 226 ~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~ 274 (534)
.+|+|+++|++..+..++. +.+++|.||++++.|..++.++....+
T Consensus 366 ~tp~gs~~n~i~~~~~~~~---g~~~~~~~~~~~g~~~~i~~~~~~~~~ 411 (413)
T cd01116 366 GTLIGASANVVAAGIAEQH---GYKISFWEFLKVGFPIMLVSLILATVY 411 (413)
T ss_pred cccccchHHHHHHHHHHHc---CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877643 457999999999999998877665543
No 38
>PRK10034 fructuronate transporter; Provisional
Probab=99.80 E-value=3.4e-16 Score=161.70 Aligned_cols=396 Identities=11% Similarity=0.094 Sum_probs=237.2
Q ss_pred hhcCChhhHHHHHHHHHHHhccCChHHHHh----h---hcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCC
Q 035612 84 TEAVPMPITSMAPLFLFPLFGISSADTVAH----S---YMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMN 156 (534)
Q Consensus 84 ~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~---~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~ 156 (534)
.-++|..+..++..+...++.-++.++..+ + +..+....+..+.+++..+|+||..+|+++.+.+++|++
T Consensus 22 k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~k--- 98 (447)
T PRK10034 22 KFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLR--- 98 (447)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCcc---
Confidence 348888888888888888777777666533 3 333777888889999999999999999999999999853
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHH
Q 035612 157 PPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLI 236 (534)
Q Consensus 157 ~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i 236 (534)
+..+++++.+.+++.-+--+....++.|++.+++|+.+.++. .+.++++.+...+-.. +.+.|+.+
T Consensus 99 --r~~~a~~l~g~llGi~vF~dv~~v~laPi~~~lak~~~~s~~----------~~~~~l~~gl~~~h~l--vPP~Pgpl 164 (447)
T PRK10034 99 --YVQLSVIIIGLIFGLAMFYEVAFIMLAPLVIVIAAEAKIPFL----------KLAIPAVAAATTAHSL--FPPQPGPV 164 (447)
T ss_pred --chHHHHHHHHHHHhhHHHHHhHHHhhHHHHHHHHHHhCcCHH----------HHHHHHHHHHHHhhcc--cCCCCcHH
Confidence 345566666776655445556678899999999999887652 2334444444433333 32333444
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCcchhhhhHHHHHH-HHhhcCCCchhHHHH
Q 035612 237 LVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA-LWAILCLFYCSRGSGPALSEYLDKANLKR-ELDMLGPMAFAEKMV 314 (534)
Q Consensus 237 ~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~~~~e~~~ 314 (534)
+.. +..+.+.++.+.+|.+.++...++ .+++.. +..++..+ .++..+++ ++ +.+++++. ...
T Consensus 165 a~a-------~~l~a~lG~~il~Gl~v~ip~~~~~g~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~~lPs~----~~s 228 (447)
T PRK10034 165 ALV-------NAYGADMGMVYIYGVLVTIPSVICAGLILPK-FLGNLERP--TPSFLKAD--QPVDMNNLPSF----GTS 228 (447)
T ss_pred HHH-------HHhCCcHHHHHHHhhHHHHHHHHHHHHHHHH-HhcccCCC--Ccchhhhc--cccccCCCCCc----HHH
Confidence 332 234678888999998887766333 444333 22221111 11100110 11 11122222 222
Q ss_pred HHHHHHHHHHHhhcccCCC-CC-C--cccccccccCchHHHHHHHHHHHhcc--CccccccCccccc-ccccCCCchHHH
Q 035612 315 LAVFGMLIALWMTRSITDD-IP-G--WGALFNDRAGDGTASVSCDGNIVVHN--SEHEAKGEKLMDW-NKCKKLPWNIIL 387 (534)
Q Consensus 315 l~~~~~~i~l~~~~~~~~~-~~-~--~~~~~~~~~~~~~va~l~~~ll~~l~--~~~~~~~~~~l~~-~~~~~v~w~~i~ 387 (534)
+...++-+++....+..+. .+ + |.+ +-+++++..++++.++++.+.. .++.++.+.+.+| ++.-+-.-.+++
T Consensus 229 ~~~illPi~Li~~~t~~~~~~~~~~~~~~-~~~fiG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~~l~~~g~IlL 307 (447)
T PRK10034 229 ILVPLIPAIIMISTTIANIWLVKGTPAWE-VVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVKSIAMVIL 307 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHH-HHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhhHhhh
Confidence 2222222333333222110 01 1 111 1234678889988887765421 1011111112221 223355666788
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH-----HHHHH-cCC
Q 035612 388 LLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAII-TEFTSNNATTTLVLPLLI-----QIAKT-MHV 460 (534)
Q Consensus 388 l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~l-t~f~Sn~a~~~il~Pi~~-----~la~~-~g~ 460 (534)
..+++-++++.+++||+.|.+++.+... +.|+..+. ++++.++ ....|.|++...-..++. ++... -++
T Consensus 308 itgaGGafg~vl~~sgi~~~i~~~~~~~-~l~~lll~---fliaa~lr~aqGSaTVA~itaa~i~a~~~~~p~~~~~~~~ 383 (447)
T PRK10034 308 IIGAGGVLKQTIIDTGIGDTIGMLMSHG-NISPYIMA---WLITVLIRLATGQGVVSAMTAAGIISAAILDPATGQLVGV 383 (447)
T ss_pred eecChHHHHHHHHhCCHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHhhccccccccCCcc
Confidence 8888999999999999999999998764 35654433 3333343 244777777666666665 44333 267
Q ss_pred ChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 035612 461 HPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLM 519 (534)
Q Consensus 461 ~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~ 519 (534)
||....+ +++++.....++..+.-.++-++-+++.+|-+|.-...+.+..++.....
T Consensus 384 ~~~~~vl--Ai~aGs~~~shvNDs~FW~v~~~~g~~v~~~lk~~T~~~~i~~v~gl~~~ 440 (447)
T PRK10034 384 NPALLVL--ATAAGSNTLTHINDASFWLFKGYFDLSVKDTLKTWGLLELVNSVVGLIIV 440 (447)
T ss_pred cHHHHHH--HHhCCCceeeeCCCCcchhhhhhcCCCHhhhheeeeHHhHHHHHHHHHHH
Confidence 7766554 45555557788888888888777889999999987555555555444333
No 39
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=99.79 E-value=1.7e-16 Score=167.30 Aligned_cols=369 Identities=14% Similarity=0.078 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 197 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~ 197 (534)
+.+++++...-....++++|..|...+.+.|+.+++ ...++...+.........+.....+..++|+..+++.++|+
T Consensus 79 ~ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~---~~~~I~i~~~~f~~~~~~~g~~~~~i~~~~il~pi~~alG~ 155 (465)
T PF03606_consen 79 GIIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGK---KNPLIPILMFFFSGGGLTIGIPEEAIAFMPILIPILIALGY 155 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC---cchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence 566666666677799999999999999999999864 22233233322222222222222238999999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 198 VPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCL 277 (534)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~ 277 (534)
|+ ....++.+.+...|..++..+|-|..+.+- -.+++..+.+.+-..+..+...+...+..+
T Consensus 156 d~-----------~~a~a~v~~~~~~g~~~~~~npf~~~iAq~-------iaglp~~sg~~~r~i~~~i~~~i~~~~~~~ 217 (465)
T PF03606_consen 156 DP-----------ITAAAAVILGAGAGFAGPPSNPFTVGIAQK-------IAGLPLFSGFWFRQIPFVIFTLIAIAYVHR 217 (465)
T ss_pred CH-----------HHHHHHHHHHHHHhhcCCccChHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 133444444444556666666655555532 235677776665544444433333333444
Q ss_pred HhcCCCCCCcchhhh-hHHHHHHHHh-hcCCCchhHHHHHHHHHHHHHHHhhc-c--cCCCCCCcccccccccCchHHHH
Q 035612 278 FYCSRGSGPALSEYL-DKANLKRELD-MLGPMAFAEKMVLAVFGMLIALWMTR-S--ITDDIPGWGALFNDRAGDGTASV 352 (534)
Q Consensus 278 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~lg~~~~~e~~~l~~~~~~i~l~~~~-~--~~~~~~~~~~~~~~~~~~~~va~ 352 (534)
+.+|.++++..++.. .++..+++.+ +..+++.++|..+.++++.+++.+.. + ..+ .+|+- .....+.+
T Consensus 218 ya~kv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~g~~~~~~~--~~~~~-----~~~~~~fl 290 (465)
T PF03606_consen 218 YAQKVKKDPSYSEVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIYGFSFVIIK--IKWYF-----PEIAALFL 290 (465)
T ss_pred HHHHHHhcccchhhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHhchhhhhcc--ccccH-----HHHHHHHH
Confidence 443332222111111 1111111111 11236778888888888777766663 1 111 12421 01123344
Q ss_pred HHHHHHHhccCccccccCccccccc----c-cCCCch--HHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-hccccHHHHH
Q 035612 353 SCDGNIVVHNSEHEAKGEKLMDWNK----C-KKLPWN--IILLLGAGFAIADGVRTSGLADDLSKALDF-LEAAPYLAIA 424 (534)
Q Consensus 353 l~~~ll~~l~~~~~~~~~~~l~~~~----~-~~v~w~--~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l~~~~~~~~~ 424 (534)
+.+++..++.. ++ ..+.+| + +...-. ..+.++-..+..-.+++....+.+.+.+.. .++.|.....
T Consensus 291 ~~~ii~~~i~~---~~---~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~~~~~~ 364 (465)
T PF03606_consen 291 IIGIIIGLIRH---RS---GKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLPGVIAA 364 (465)
T ss_pred HHHHHHHHHHh---hc---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCHHHHH
Confidence 45555554431 00 112222 1 211111 233334344444556777888888888874 4566666666
Q ss_pred HHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHH
Q 035612 425 PIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIK 502 (534)
Q Consensus 425 ~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k 502 (534)
+.++++..+++.+ .|.++.+..++|++.++++.+|+++....++..++++++ .++|. ++.-..+.+..++++.||+|
T Consensus 365 ~~m~~~~~~~~fli~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPt-sg~~m~~l~ia~V~~~~w~K 443 (465)
T PF03606_consen 365 IGMFLIQFLINFLIGSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPT-SGVLMAVLGIAKVSYGKWVK 443 (465)
T ss_pred HHHHHHHHHHeeecCCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccch-HHHHHHHhhhcCCCHHHHHH
Confidence 6667777777756 899999999999999999999999999999999999999 55555 44555566778999999999
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 035612 503 TGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 503 ~g~~~~ii~~ii~~~~~~~ 521 (534)
+.+|+.++..++..+.+..
T Consensus 444 ~~~~~~~~~~v~~~v~l~i 462 (465)
T PF03606_consen 444 RTWPPMLIWFVLSIVFLII 462 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888887766543
No 40
>PRK11588 hypothetical protein; Provisional
Probab=99.79 E-value=3.4e-16 Score=162.02 Aligned_cols=370 Identities=13% Similarity=0.100 Sum_probs=227.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 197 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~ 197 (534)
+++++++-.--.-..+++||..|.-..+++++.++ +...++..++.+..+.+......--+..+.|+..+++.++|+
T Consensus 111 ~ii~filiiGG~f~vi~~TGAi~~~i~~l~~k~~~---~~~llIpil~~lFsl~G~~~G~~Ee~i~f~pi~v~l~~alGy 187 (506)
T PRK11588 111 GIIMFMLVIGGAFGIVMRTGTIDNGILALIRKTRG---NEILFIPVLFILFSLGGAVFGMGEEAIAFAIIIAPLMVRLGY 187 (506)
T ss_pred ceeehhhHHhhHHHHHHHhchHHHHHHHHHHHhCC---CcEEeHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC
Confidence 45554443333448999999999999999999876 445566666666666665554333456799999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 198 VPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCL 277 (534)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~ 277 (534)
|+ ....++.+.+.-.|+++ +..|+...+..++.. ++...+=+.+-+...++...+...++.+
T Consensus 188 D~-----------ivg~ai~~lg~~iGf~~---s~~NPftvgIAQ~iA----glp~~SG~~~R~i~~~v~~~i~i~yv~~ 249 (506)
T PRK11588 188 DS-----------ITTVLVTYVATQIGFAT---SWMNPFSVAIAQGIA----GVPVLSGSGLRIVMWVIFTLIGLIFTMV 249 (506)
T ss_pred cH-----------HHHHHHHHHHhhhhhcc---cccCccHHHHHHHhc----CCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 86 23444444433333432 334444444444431 2222222333333334444444444444
Q ss_pred HhcCCCCCCcchhhhhH-HHHHHHHh--hcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHH
Q 035612 278 FYCSRGSGPALSEYLDK-ANLKRELD--MLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSC 354 (534)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~~~--~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~ 354 (534)
+.+|-+++++.+-..+. +..+++.+ +..++|.++|.++.+|++.++..+..-.. .+|.- + +.+...++.
T Consensus 250 YA~kVkkdP~kS~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~Gv~~---~gW~~--~---Eia~~Fl~~ 321 (506)
T PRK11588 250 YASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIWGVVV---NAWFI--P---EIASQFFTM 321 (506)
T ss_pred HHHHhcCCCcccccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHHHhhc---ccccH--H---HHHHHHHHH
Confidence 44443332221111111 11111111 12478999999999998887776653331 24531 1 123344445
Q ss_pred HHHHHhccCccccccCcccccccc-c------CCCchHHHHHHHHHHHHHHH-----HHhCHHHHHHHHhh-hhccccHH
Q 035612 355 DGNIVVHNSEHEAKGEKLMDWNKC-K------KLPWNIILLLGAGFAIADGV-----RTSGLADDLSKALD-FLEAAPYL 421 (534)
Q Consensus 355 ~~ll~~l~~~~~~~~~~~l~~~~~-~------~v~w~~i~l~~~~~~l~~~l-----~~sG~~~~ia~~l~-~l~~~~~~ 421 (534)
+++..+..+ . .+.+-++.+|. + +---...++++-+-.+...+ ++-...|.+-+.+. .+++.|..
T Consensus 322 giv~G~i~~-~--~~~~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~ 398 (506)
T PRK11588 322 GLVIGLIGV-V--FRLNGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDA 398 (506)
T ss_pred HHHHHHhhh-h--hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCHH
Confidence 555554421 0 00012344443 2 12222344444455555667 44447788877776 46788888
Q ss_pred HHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHH
Q 035612 422 AIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQD 499 (534)
Q Consensus 422 ~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~ 499 (534)
.....++++..+++.| .|.++.+++.+|++.|+++.+|++|....++..++.++. .++|. ++..+.+.+..++++++
T Consensus 399 ~~ai~m~i~~~~lNffIpSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pt-s~~lm~~Laia~Ipy~k 477 (506)
T PRK11588 399 VSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPT-SASLMATLGVCRVDFGN 477 (506)
T ss_pred HHHHHHHHHHHHHHeEecChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhh-HHHHHHHHHHhCCCHHH
Confidence 8777888888888877 899999999999999999999999999999999999998 45555 34444555678999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 035612 500 MIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 500 ~~k~g~~~~ii~~ii~~~~~~ 520 (534)
|+|+.+|+.++..++..+.+.
T Consensus 478 W~Kf~~pl~~i~~v~~~v~l~ 498 (506)
T PRK11588 478 WLKFIWRFLLLLFIMSSVVVI 498 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887776655544
No 41
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=99.78 E-value=1.5e-17 Score=174.71 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc-cC--CCchHHHHHH
Q 035612 314 VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-KK--LPWNIILLLG 390 (534)
Q Consensus 314 ~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~~--v~w~~i~l~~ 390 (534)
++.++..++++|+++.. + .+.+.++++++.++.+. ++++|||. ++ ++|+++++++
T Consensus 2 ~l~i~~~~i~l~~~~~~-~------------i~~~~~al~~~~ll~~~---------gv~~~~~~~~~~~~~~~~i~~~~ 59 (416)
T cd01118 2 AIAIFVLTLVLVIWRPF-G------------LPEAVWAVLGAVIALIL---------GLVSPHDALEVWGIVWDVTLTLI 59 (416)
T ss_pred HHHHHHHHHHHHHHccC-C------------CChHHHHHHHHHHHHHH---------CCCCHHHHHHHHhcchhHHHHHH
Confidence 46678888889998652 1 13455666655555443 57899985 44 6899999999
Q ss_pred HHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh---HHHHH
Q 035612 391 AGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP---LLLMV 467 (534)
Q Consensus 391 ~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p---~~~~l 467 (534)
+++.++.+++++|+.+|+++.+.+..+.++..+...+++++.+++.|.||++++.++.|++..++++.|.+| ..+.+
T Consensus 60 g~~~i~~~l~~tGl~~~ia~~l~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~ 139 (416)
T cd01118 60 GVILLSLLLDEEGFFEWVAALAARWARGSGRKLFTLIVLLGAAVTAFFANDGTALILTPIVIALLRALGAKKNRTLPFLY 139 (416)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHH
Confidence 999999999999999999999886544455555667889999999999999999999999999999999999 77778
Q ss_pred HHHHHHhh-hcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 468 PGAIGAQF-SFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 468 ~~~~~~~~-~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
..+++++. ++++|+|+++|.+.++.+++++.||+|.++|..++++++.....+...
T Consensus 140 ~~~~~a~~g~~~tpig~~~n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~ 196 (416)
T cd01118 140 ACAFIADAASLPLPISNLVNIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFF 196 (416)
T ss_pred HHHHHHcccccccccCCchHHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 87888877 499999999999999989999999999999999998887777766543
No 42
>PLN00136 silicon transporter; Provisional
Probab=99.77 E-value=6.1e-17 Score=170.76 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=151.6
Q ss_pred hcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 035612 85 EAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGI 164 (534)
Q Consensus 85 ~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~ 164 (534)
-.+|.+++++++..++.+.+..+++++++.+.|++++++.|+|+++.+++++|+.+++++.+.+..++ ++....+.+
T Consensus 299 ~g~p~~~iAl~~a~~lll~~~~~~~~~l~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~---~~~~~~~~~ 375 (482)
T PLN00136 299 VGLNMSWTAITTAIALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKV---NSVGGISVL 375 (482)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCC---ChHHHHHHH
Confidence 45899999999999999999899999999999999999999999999999999999999998777654 466777888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhh
Q 035612 165 CGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTY 244 (534)
Q Consensus 165 ~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~ 244 (534)
..+++++|.++||++.+++|.|++.......+ ++ +. ....+..++++++||..|++|+++|++..+.+++.
T Consensus 376 ~~~s~~lS~~isNvp~~~~m~p~v~~~~~~~~--~~-----~~--~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~ 446 (482)
T PLN00136 376 SVIILLLSNLASNVPTVLLMGDEVAAAAALIS--PA-----AV--TRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRA 446 (482)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcccC--Cc-----cc--chHHHHHHHHHhhccceeeccchhHHHHHHHHHHh
Confidence 88999999999999999999999875543322 11 00 12446689999999999999999999999999973
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035612 245 FPEANPISFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 245 ~~~~~~is~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
.-++.+++|.||+++|+|+.++++++...++
T Consensus 447 ~~~G~~isf~~f~k~G~P~~l~~~~i~~~~~ 477 (482)
T PLN00136 447 PRNAYDLTFWQHIVFGVPSTLIVTAIGIPLI 477 (482)
T ss_pred hccCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1026789999999999999999888876654
No 43
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=99.76 E-value=8e-17 Score=167.36 Aligned_cols=185 Identities=24% Similarity=0.313 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHh-----hcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 73 GVLAWVFAWWLT-----EAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 73 ~i~~~~i~~w~~-----~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
.+++..+.+|.. +..|.+++++....++.+.|..++||+.+++.+++++++.+++.++.+++++|+.||+++.+.
T Consensus 192 ~~~~~~i~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~ 271 (382)
T cd01115 192 AVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALI 271 (382)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 444555555553 567999999999999989999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
++.+++ +++.....+++.+.++|.++||++++.++.|++.+++++.|.|| +.+.++..++++. +..+
T Consensus 272 ~~~~~~--~~~~~~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p----------~~~~~~~~~~~~~-~~~t 338 (382)
T cd01115 272 SLLGGL--PPFAILLLLCLLTLVLTNFISNTATAVLLAPIALSIALSLGLPP----------EALLLAVAIGASC-AFML 338 (382)
T ss_pred HHhCCC--CHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHH-HHcC
Confidence 876543 57778888999999999999999999999999999999999988 5688999999986 6899
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLF 278 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~ 278 (534)
|+|+++|.+..+ ..++++.||+++++|+.++.++....+.+.+
T Consensus 339 p~~~~~n~i~~~--------~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~ 381 (382)
T cd01115 339 PVGTPPNAIVLG--------PGGYKFSDFAKVGLPLSILSLVVSVTMIPLI 381 (382)
T ss_pred ccCCCCCeeeeC--------CCCccHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999998874 3579999999999999999988877766543
No 44
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=99.76 E-value=6.8e-17 Score=171.11 Aligned_cols=193 Identities=15% Similarity=0.203 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhh---cCChhhHHHHHHHHHHHhccCChHHHHhh-hcchHHHHHHHHHHHHHHHHHhcHHH
Q 035612 65 QATSRNMLGVLAWVFAWWLTE---AVPMPITSMAPLFLFPLFGISSADTVAHS-YMDDVIALVLGSFILALAVEHYNIHK 140 (534)
Q Consensus 65 ~~~~~~~l~i~~~~i~~w~~~---~ip~~~~al~~~~l~~l~gi~~~~~v~~~-~~~~~i~li~g~~~l~~~l~~tGl~~ 140 (534)
+.++++.+.+++.++++|+++ .+|.+++++...+++.++|+.+.|+..+. ..+++++++.|++.++.+++++|+.+
T Consensus 245 ~~~e~~~l~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~ 324 (444)
T TIGR00785 245 SFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIK 324 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHH
Confidence 446677899999999999998 68899999999999999999999998876 88899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHh
Q 035612 141 RLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSA 220 (534)
Q Consensus 141 ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa 220 (534)
++++++.+..++.+ .+..+...+++...+++.++||+++++++.|++.+++++.|.|| ..+.+...+++
T Consensus 325 ~i~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~~~ia~~~G~~p----------~~~~~~~~~~~ 393 (444)
T TIGR00785 325 WFSEKLVGILDGLS-PTIAVLVLVVLFYIILYFFASNTAHTAALVPIFFSVASAQGIPL----------ELLALALALSA 393 (444)
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHH
Confidence 99999998875431 24455567778888999999999999999999999999999988 56888999999
Q ss_pred hhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 221 AVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 221 ~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
++++..+|+|+++|.+..+ ..++++.||+++++|..++.+++...+.+
T Consensus 394 ~~~~~~tP~~s~~n~i~~~--------~g~~~~~~~~k~~~p~~l~~~~~~~~~~~ 441 (444)
T TIGR00785 394 SLMGFLTPYATPPNAIAYG--------SGYVKIKDMWRVGAIIGIVGLIVLLLVGT 441 (444)
T ss_pred HHHHHhcCCCCCccceeec--------CCCccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9998999999999988763 34689999999999999988777665544
No 45
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=99.76 E-value=1.5e-14 Score=152.36 Aligned_cols=404 Identities=14% Similarity=0.081 Sum_probs=221.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh----hhc---chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 035612 76 AWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH----SYM---DDVIALVLGSFILALAVEHYNIHKRLALNITI 148 (534)
Q Consensus 76 ~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~~~---~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~ 148 (534)
+..+++....++|..+..++..++..++.-++..|..+ +++ ++....+..+.+++..+++||..+|+++.+.+
T Consensus 11 ~~~~~~~~~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~ 90 (440)
T TIGR00791 11 VLLLLLIMKFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLA 90 (440)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 44455555667888888888887777776666555432 344 58888999999999999999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccccc
Q 035612 149 LFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 228 (534)
Q Consensus 149 ~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~ 228 (534)
++|++ |..+.++..+++++....-.....++.|++.+++++.|.++. .+.+..+.+-...-...|
T Consensus 91 ~~g~~-----r~~~a~~~~~~ilgi~~f~~~~~vil~Pi~~~l~~~~g~s~~----------~~a~~~~~~~~~~~~~vP 155 (440)
T TIGR00791 91 KFGKS-----RVQWAVVIAGLIVGLALFFEVGFVLLIPLVFSIAAEAKISLL----------KLGIPMVAALSVAHGFLP 155 (440)
T ss_pred Hhccc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCChH----------HHHHHHHHHHHHhceeCC
Confidence 99863 344566666677766553334467999999999999998772 233333333333333334
Q ss_pred ccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCC
Q 035612 229 TGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI-FVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPM 307 (534)
Q Consensus 229 ~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 307 (534)
..++++. +.+ ..+.+..+++.++++.++.. ++..+++..+.-|+.+++ ++.++.+..+++.+++++.
T Consensus 156 p~Pg~~~-~a~--------~~g~~~~~~~~~gl~~~i~~~i~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~ 223 (440)
T TIGR00791 156 PHPGPTA-IAN--------EYGADIGEVLLYGLIVAIPTVIIAGPLFTKFLGRIVPPS---PEASLGSQKTFSEEEMPSF 223 (440)
T ss_pred CCccHHH-HHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---CchhhhccccccccCCCCc
Confidence 4444442 332 23678999999999998875 444555443332322111 1100000000001122222
Q ss_pred chhHHHHHHHHHHHHHHHhhcc--cCCCCCCcccccccccCchHHHHHHHHHHHhc---cCccccccCcccc-ccc-ccC
Q 035612 308 AFAEKMVLAVFGMLIALWMTRS--ITDDIPGWGALFNDRAGDGTASVSCDGNIVVH---NSEHEAKGEKLMD-WNK-CKK 380 (534)
Q Consensus 308 ~~~e~~~l~~~~~~i~l~~~~~--~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l---~~~~~~~~~~~l~-~~~-~~~ 380 (534)
........+-+++++...... ..+. .+..+ ..+..++..++++.+.+..+. .+ +.++.+...+ +++ +++
T Consensus 224 -~~~~~~~llPillii~~~~~~~~~~~~-~~~~~-~~~~~g~~~~Alli~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~ 299 (440)
T TIGR00791 224 -GISLFTALLPVILMAVKTIAELTLPKG-STAYE-VVEFIGNPSTAMFIALLVAIYTLGIR-RGMPMDQVMDSCGSAIGS 299 (440)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHhcCCc-ccHHH-HHHHHcCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 111111111111111111000 0010 00000 111223556676666543322 11 0000011111 111 122
Q ss_pred CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHH----HHHHHHHHHHHHHH
Q 035612 381 LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNN----ATTTLVLPLLIQIA 455 (534)
Q Consensus 381 v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~----a~~~il~Pi~~~la 455 (534)
.. .++..++.+.+++..++++|..|.+++.+...+ .|+..+. ++++.+++.. .|.+ .+..++.|++.
T Consensus 300 ~~-~i~li~~~gg~f~~vl~~~G~~~~l~~~~~~~~-~~~~~l~---fli~~~i~~atGS~tva~~~~~~I~~Pil~--- 371 (440)
T TIGR00791 300 IA-MILLIIGGGGAFKQVLIDSGVGDYIAELMSGMN-ISPILMA---WLIAAILRIALGSATVAALTAAGLVAPLLG--- 371 (440)
T ss_pred HH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCC-CCHHHHH---HHHHHHHHHhhcchHHHHHHHHHHHHHHhh---
Confidence 22 244555568999999999999999999987653 4554433 2333333222 4433 44567888853
Q ss_pred HHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 035612 456 KTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 456 ~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~ 520 (534)
...|.||....+ +++++...+.+...+...+..++.+.+.||-+|.-...+.+.-++......
T Consensus 372 ~~~g~~~~~~~l--ai~aG~~~~sH~nd~~fwl~~~~~g~~~~~~~k~~~~~~~i~~~~~~~~~~ 434 (440)
T TIGR00791 372 QYSGVNPALLVL--ATGAGSVIASHVNDAGFWLFKEYFGLTVKETLKTWTLLETIISVVGLIGVL 434 (440)
T ss_pred ccCCcCHHHHHH--HHhcCCcccccCCCChhhhhhhhcCCCHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 346889887643 344433322332444445554677899999999877777776665554443
No 46
>COG1288 Predicted membrane protein [Function unknown]
Probab=99.75 E-value=1.1e-16 Score=158.65 Aligned_cols=359 Identities=16% Similarity=0.152 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCc
Q 035612 121 ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPL 200 (534)
Q Consensus 121 ~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~ 200 (534)
.+++|+++ ..++|||..|+--..+.++.++ +...++..++....+-.......--+.-++|+..+++.++|+|+
T Consensus 103 iLviGG~~--GIvnkTGaid~Gi~ali~k~kG---~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialGyDs- 176 (481)
T COG1288 103 ILVIGGAF--GIVNKTGAIDAGIAALIRKTKG---KEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALGYDS- 176 (481)
T ss_pred hhhhccee--eeeeccchHHHHHHHHhhhcCC---CeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhCCch-
Confidence 34445444 7889999999999999998876 44555555555555555555555567889999999999999987
Q ss_pred chhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035612 201 QSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYC 280 (534)
Q Consensus 201 ~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~ 280 (534)
..-...+..++.+|.+. +..|+...+..++ ..++++.|=+.+-+...++..+....+++++.|
T Consensus 177 ---------i~~va~i~lgt~iG~~~----St~NPF~~~IAq~----iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~ 239 (481)
T COG1288 177 ---------ITGVAIIYIGTQIGFAA----STMNPFATVIAQN----IAGIPFLSGMGLRIVVWVVFTLISIIYVYWYAS 239 (481)
T ss_pred ---------HHHHHHHHHHhccchhh----hhcCchHHHHHhh----hcCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344455544333 2334444444443 235566655555566666666666666666666
Q ss_pred CCCCCCcchhh-hhHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHH
Q 035612 281 SRGSGPALSEY-LDKANLKR----ELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCD 355 (534)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~----~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~ 355 (534)
|-|++++.+.. +++++.+| +.++..|.+.++|.++.+|.+.+...+..-. ..||. +. ..+...+..+
T Consensus 240 KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~GV~---~~GW~--f~---eiA~~Fl~mg 311 (481)
T COG1288 240 KVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMIWGVI---VLGWW--FP---EIAAQFLAMG 311 (481)
T ss_pred HHhcCccccccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHhh---hhcee--hH---HHHHHHHHHH
Confidence 54444333221 12222222 3333347899999999999887766554322 12452 11 1233344455
Q ss_pred HHHHhccCccccccCcccccccc-cCCCchHHHHHHHHHHHHHH------HHHhCHHHHHHHHhhh-hccccHHHHHHHH
Q 035612 356 GNIVVHNSEHEAKGEKLMDWNKC-KKLPWNIILLLGAGFAIADG------VRTSGLADDLSKALDF-LEAAPYLAIAPIV 427 (534)
Q Consensus 356 ~ll~~l~~~~~~~~~~~l~~~~~-~~v~w~~i~l~~~~~~l~~~------l~~sG~~~~ia~~l~~-l~~~~~~~~~~~~ 427 (534)
++..++.+ ++.+|. +.+.-+.-=++++.+.+|-+ +++.-+.|.+-+...+ +++.|..+..+..
T Consensus 312 Iiig~I~g---------lse~~~~~sF~~Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~~~f~i~m 382 (481)
T COG1288 312 IIIGLIGG---------LSENDIASSFIEGASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSSAVFAIGM 382 (481)
T ss_pred HHHHHHhc---------cchhHHHHHHHHhHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55565543 555553 44444444556666555544 5777778888888874 5778888777777
Q ss_pred HHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhH
Q 035612 428 CLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGL 505 (534)
Q Consensus 428 ~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~ 505 (534)
.++-.+++.| .|.+..+++.+|++.|+|+..|+++.....+...+.+.. +++|. |..-+.+.+.+++++.+|+|+..
T Consensus 383 li~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv~RqvvV~Afq~g~G~~n~I~PT-Sg~~ma~La~~~i~y~~W~Kfv~ 461 (481)
T COG1288 383 LIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGVPRQVVVLAFQLGDGFSNIIAPT-SGLLMATLAMARVPYGTWLKFVA 461 (481)
T ss_pred HHHHHHheEEEeCCCchhHhhchhhhhhHHhcCCCHHHhhhhhhhcchhhheecCc-hHHHHHHHHHccCChhHHHHHHH
Confidence 7777777766 789999999999999999999999999999999998887 55555 33344445668999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 035612 506 PLKIAGIAAMAFLMP 520 (534)
Q Consensus 506 ~~~ii~~ii~~~~~~ 520 (534)
|+..+..++..+++.
T Consensus 462 pl~~i~~li~~~~li 476 (481)
T COG1288 462 PLLGILFLISSVVLI 476 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887777665543
No 47
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=99.75 E-value=1.7e-14 Score=147.37 Aligned_cols=404 Identities=13% Similarity=0.061 Sum_probs=238.4
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh----h---hcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 75 LAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH----S---YMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 75 ~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~---~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
.+..+++.+-.+++..+..++...+..+.+-++..++.+ + +-...-..+..+-+++..+|+||..+|+|+.++
T Consensus 11 il~ll~l~i~~kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii 90 (442)
T COG2610 11 ILLLLLLIIKFKVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLI 90 (442)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344445555677888888888888777777777666543 3 333677778888999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
+++|+ ++..+++.+.+++++.-++-.....++.|++.+++|+.+.+. ..+..+++.+.....+..
T Consensus 91 ~~~G~-----kr~~~Al~l~g~i~~~~vF~dv~~v~l~Pia~alak~~~is~----------~~i~v~la~g~~~~h~~v 155 (442)
T COG2610 91 RKFGE-----KRALLALVLAGLILGIPVFFDVGFVLLIPLAFALAKEAGISL----------LKIAVPLAAGLSVTHMFV 155 (442)
T ss_pred HHhCc-----chHHHHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcccC
Confidence 99986 346788999999999889999999999999999999999876 234445554444343433
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCC
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALV-IFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGP 306 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 306 (534)
|.+++ .+... +..+.+.+.-..++...++. .++..+++. ++.+|+.+..+ +++...+..++++ ++.
T Consensus 156 pP~Pg--pia~a-------~~~~a~~g~~il~g~ivaip~~~iag~~~~-~~~~r~~~~~~-~~~~~~~~~~~~~--~ps 222 (442)
T COG2610 156 PPHPG--PIAAA-------GPFGADIGTVILYGLIVAIPTVIIAGPLFA-KLLGRKIKALP-AGEGSLKELDEKE--LPS 222 (442)
T ss_pred CCCCc--hhhhh-------hhcCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCCCCc-hhhcccccccccc--CCc
Confidence 43332 23221 12345555667777777776 444555544 33333332211 1111111111111 222
Q ss_pred CchhHHH----HHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-c-c-
Q 035612 307 MAFAEKM----VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-C-K- 379 (534)
Q Consensus 307 ~~~~e~~----~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~-~- 379 (534)
.....-. .+..+...+.-......+ +.+. ..++.+...++++.+++..+..- ..++++..-+..| + +
T Consensus 223 ~g~sl~~~~vpi~lm~l~ti~~~~~~~~~---~~~~--~~~flg~~~~al~i~ll~ai~~l-~~~~~~~~~~~~~~~~~~ 296 (442)
T COG2610 223 FGVSLATILVPILLMALKTIASLLLPKGS---PALE--VLEFLGNPVIALLIALLVAIYTL-GMGRGRSKNTLMESLESA 296 (442)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccccc---chHH--HHHHhcChHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHhh
Confidence 1111111 111111111111111110 1111 11233445566655544333211 1111110100111 1 1
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHH-HHH
Q 035612 380 -KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIIT-EFTSNNATTTLVLPLLIQ-IAK 456 (534)
Q Consensus 380 -~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt-~f~Sn~a~~~il~Pi~~~-la~ 456 (534)
+-.-.+++..+++.+++..+.++|..|.+++.+...+ .|++... .+++..+. .-.|.|+...+-..++.+ +-+
T Consensus 297 i~~~~~ilLitgaggafg~Vl~~sg~g~~la~~l~~~~-~~pil~~---~iia~~lr~a~GSaTva~~tA~~i~a~~~l~ 372 (442)
T COG2610 297 LKPIAMILLITGAGGAFGQVLADSGVGDYLASLLSGTG-LSPLLLA---FIVAALLRIATGSATVAMITAAGIVAPPLLA 372 (442)
T ss_pred HHHHHHHHHHHhhhHhhhhHHHhcchhHHHHHHHHhCC-CChHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3344567788999999999999999999999998765 3444333 23333333 347888888888888876 666
Q ss_pred HcCC-ChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 457 TMHV-HPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 457 ~~g~-~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
+.+. +|..+ ..++.+++....+.++.+.-..+-++-+++.||-+|.-...+.+..++...
T Consensus 373 ~~~~~~~~~l-~~lA~~aGs~~~sh~nDs~Fw~~~~~~glt~ket~k~wt~~~ti~~~vgl~ 433 (442)
T COG2610 373 QLGAVNPEAL-HVLATAAGSVIFSHVNDSGFWLVKGYFGLTVKETLKTWTVLTTIISVVGLV 433 (442)
T ss_pred hcCCccHHHH-HHHHHhccCceEeeecCCeEEEeeeecCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 6665 55333 334455555567777777777777777899999999877776666665533
No 48
>PRK15445 arsenical pump membrane protein; Provisional
Probab=99.74 E-value=2.3e-16 Score=166.02 Aligned_cols=190 Identities=13% Similarity=0.149 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc---cCCCchHHHHHH
Q 035612 314 VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC---KKLPWNIILLLG 390 (534)
Q Consensus 314 ~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~---~~v~w~~i~l~~ 390 (534)
++.+|.+++++|+.++. + .+.+.++++++.++.+. ++++++|. .+++|+++++++
T Consensus 3 ~l~i~~~~~~~~~~~~~-~------------ip~~~~all~~~ll~~~---------gv~~~~~a~~~~~~~~~~i~l~~ 60 (427)
T PRK15445 3 AIAIFLLTLVLVIWQPK-G------------LGIGWSALLGAVLALLT---------GVVSLGDVPVVWGIVWNATLTFI 60 (427)
T ss_pred HHHHHHHHHHHHhcccC-C------------CChHHHHHHHHHHHHHH---------cCCCHHHHHHHHHhcccHHHHHH
Confidence 56778888888887653 1 13455666665554433 47888884 369999999999
Q ss_pred HHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh---HHHHH
Q 035612 391 AGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP---LLLMV 467 (534)
Q Consensus 391 ~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p---~~~~l 467 (534)
|++.++.+++++|+.|++++.+.+..+.++......+++++.+++.|.||+++++++.|++..+++++|.|| ..+.+
T Consensus 61 g~~vi~~~l~~tGl~~~ia~~~~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~ 140 (427)
T PRK15445 61 AIIIISLLLDEAGFFEWAALHVARWAKGNGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFSKKATLAFVM 140 (427)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHH
Confidence 999999999999999999999987654444444557888999999999999999999999999999999999 56667
Q ss_pred HHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035612 468 PGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAY 525 (534)
Q Consensus 468 ~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~ 525 (534)
..+++++.+ ..+|.++++|.+..+..++++.||.|.+.|..++++++.....+.+.+.
T Consensus 141 ~~~~~a~~~~~~~~ig~~~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~ 199 (427)
T PRK15445 141 AAGFIADTASLPLVVSNLVNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFRK 199 (427)
T ss_pred HHHHHhcccccccccCCchHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 777778775 6789999999998887789999999999999999988887777766543
No 49
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=99.69 E-value=5.5e-15 Score=155.81 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHhhc-C--ChhhHHHHHHHH----HHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHH
Q 035612 69 RNMLGVLAWVFAWWLTEA-V--PMPITSMAPLFL----FPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKR 141 (534)
Q Consensus 69 ~~~l~i~~~~i~~w~~~~-i--p~~~~al~~~~l----~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~r 141 (534)
++++.+++.++.+|.++. . |....++.+..+ ....|+.++||+.+.++|++++++.|++.++.+++++|+.++
T Consensus 225 ~~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~~~ 304 (429)
T TIGR00935 225 KKCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLTEY 304 (429)
T ss_pred HHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 455677788888888754 3 334333433322 224688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC--CCCCcchhhhhhhhhHHHHHHHHH
Q 035612 142 LALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL--PEVPLQSTLVRKYCKAVVLGVIYS 219 (534)
Q Consensus 142 ia~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~--g~~~~~~~~~~~~~~~l~l~i~~a 219 (534)
+++.+ ...++. ++......+...++++|.++||++ ++.|++.+++++. |.+| +.+.+++.++
T Consensus 305 la~~~-~~~~~~--~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~~~----------~~~~~~l~~~ 368 (429)
T TIGR00935 305 LGGIL-NVLEDR--GLWAAILGTGFVSAFLSSIMNNMP---TMLVGALSIDQSSATGLPK----------EPMVYANVIG 368 (429)
T ss_pred HHHHH-HHHhcC--CHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHhhccccccch----------hHHHHHHHHH
Confidence 99954 444332 466666778888999999999998 4899999998753 5555 4588899999
Q ss_pred hhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 220 AAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 220 a~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
+++||..||+|+++|++..+.+++. +.++++.||+++|+|..++.+++...++.
T Consensus 369 ~~~gg~~tp~gs~anli~~~~~~~~---g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 369 ADLGPKITPIGSLATLLWLHVLEQK---GYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred HhcCcccCccccHHHHHHHHHHHHC---CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887764 44689999999999999988777665554
No 50
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.5e-15 Score=160.40 Aligned_cols=193 Identities=23% Similarity=0.358 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCh----hhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHH
Q 035612 67 TSRNMLGVLAWVFAWWLTEAVPM----PITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRL 142 (534)
Q Consensus 67 ~~~~~l~i~~~~i~~w~~~~ip~----~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ri 142 (534)
+.+...+++......|.++..+. ..+++++..++.+.|+.+++|++++..|++++++.|++.++.+++|+|..+++
T Consensus 261 ~~~l~~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i 340 (461)
T COG0471 261 DEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWI 340 (461)
T ss_pred hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34667899999999999888665 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhh
Q 035612 143 ALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAV 222 (534)
Q Consensus 143 a~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~i 222 (534)
++.+....++. ++..+...+++.+.+++.|+||+|++..|.|+...+++++|.+| ..+.+.++.+++
T Consensus 341 ~~~l~~~~~~~--~~~~il~~~~~~~~~~~~f~SntA~~~~m~Pi~~~ia~~l~~~p----------~~~~~~v~~~as- 407 (461)
T COG0471 341 AGLLAGSLGGL--GPFAILLLLLLLTLVLTLFASNTATAIAMVPIAIALASALGGAP----------LLLLMLVAVSAS- 407 (461)
T ss_pred HHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCc----------hHHHHHHHHHHh-
Confidence 99999988763 46777788899999999999999999999999999999998776 234444454444
Q ss_pred ccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035612 223 GGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYC 280 (534)
Q Consensus 223 gg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~ 280 (534)
+++++|+|+++|.++.| ..++++.||.+.|+|..+++..+...+...+++
T Consensus 408 ~~~~tpv~~~~n~iv~g--------~G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~ 457 (461)
T COG0471 408 GGFLTPVGSPPNPIALG--------SGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWP 457 (461)
T ss_pred hhhhcCCCCCCCceEEC--------CCCccHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999883 678999999999999999998888777766554
No 51
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.69 E-value=1.1e-15 Score=162.95 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=164.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHHhccCChHHH-HhhhcchHHHHHHHHHHHHHHHHHhcHHH
Q 035612 65 QATSRNMLGVLAWVFAWWLTEAV---PMPITSMAPLFLFPLFGISSADTV-AHSYMDDVIALVLGSFILALAVEHYNIHK 140 (534)
Q Consensus 65 ~~~~~~~l~i~~~~i~~w~~~~i---p~~~~al~~~~l~~l~gi~~~~~v-~~~~~~~~i~li~g~~~l~~~l~~tGl~~ 140 (534)
+.++++.+.+++.++++|+++.. +.+.+++++..++.+.|+++.||. .++..|++++++.|++.++.++++||+.+
T Consensus 265 s~~Ek~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~ 344 (471)
T PF00939_consen 265 SKKEKKVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAK 344 (471)
T ss_pred chhHhhhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHH
Confidence 45578889999999999999985 789999999999999999999985 46899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC-CCCCcchhhhhhhhhHHHHHHHH
Q 035612 141 RLALNITILFCGEPMNPPLLLLG-ICGTTAFVSMWMHNVAAAVIMMPVATGILQNL-PEVPLQSTLVRKYCKAVVLGVIY 218 (534)
Q Consensus 141 ria~~i~~~~g~~~~~~~~l~~~-~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~-g~~~~~~~~~~~~~~~l~l~i~~ 218 (534)
++++.+....++. ++...... +.+...+.+.+.||+|+++++.|++.+++++. |.|| ....+.+.+
T Consensus 345 ~la~~l~~~l~~~--~~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~~~a~~~~g~~p----------~~~~l~~~~ 412 (471)
T PF00939_consen 345 WLANVLLPLLGGL--SPFLVVLVILLVTVLLLTNFMSNTATVAILIPIVISLAAALGGINP----------LALALIVAF 412 (471)
T ss_pred HHHHHHHHHcccc--ccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhccCCCh----------HHHHHHHHH
Confidence 9999999998743 44443333 33334556778899999999999999999999 9888 467778888
Q ss_pred HhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035612 219 SAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFY 279 (534)
Q Consensus 219 aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~ 279 (534)
+++.++..+|+++|+|.+..+ .++++..|++++|+|..++..++...+...++
T Consensus 413 ~~~~~~~~lP~~sp~~~i~~~--------~g~~~~~d~~k~G~~~~ii~~iv~~~~~~~~w 465 (471)
T PF00939_consen 413 ASSFAGFLLPYSSPPNAIAYG--------TGYYKFKDFIKYGFPLTIIAIIVIILVAYPYW 465 (471)
T ss_pred HhhhccccCCcCCcceeEEEc--------CCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888777999999999999873 56789999999999999988877666554444
No 52
>PRK09921 permease DsdX; Provisional
Probab=99.68 E-value=5.7e-13 Score=138.73 Aligned_cols=405 Identities=13% Similarity=0.060 Sum_probs=220.9
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHh----hhcc---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 77 WVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAH----SYMD---DVIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 77 ~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~----~~~~---~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
..+++.+.-++|..+.-+++.+.+.+..-+++++..+ ++++ .....+..+.+++..+|+||..+|+++.+.+.
T Consensus 17 ~l~~li~k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~ 96 (445)
T PRK09921 17 LIVLTIVKFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC 96 (445)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3444445567788887777777777777677666533 4433 55678888999999999999999999996544
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccc
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLT 229 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~ 229 (534)
|+. +..+.. ..+..+.+.-+--.....++.|++.+++|+.+.++. .+.+.+++.+...- ....
T Consensus 97 -~~~--~~~~a~---~~~gll~~IpvF~~~~~vil~Pl~~~lak~~~~s~~--------~~~~~~~~~~~~~h---~~vP 159 (445)
T PRK09921 97 -RWL--SADVIM---VLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLL--------KLAIPLCTALMAVH---CVVP 159 (445)
T ss_pred -hhh--hHHHHH---HHHHHHHcccHHHHhHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHhH---hcCC
Confidence 432 333332 222222221112333456999999999999877642 12222333332221 2223
Q ss_pred cchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCc
Q 035612 230 GTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA-LWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMA 308 (534)
Q Consensus 230 g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 308 (534)
++|....+.+ ..+.+.+....+|++.++....+ .+++..+.-|+.++ ++.+++. ++..+++.+++.+.
T Consensus 160 p~Pg~~~~a~--------~lg~~lg~~~l~Gl~~~i~~~~i~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~lP~~- 228 (445)
T PRK09921 160 PHPAALFVAN--------KLGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNRLPF-KPVPTEF-ADLEVRDEKTLPSL- 228 (445)
T ss_pred CCcHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCchh-hhhccccccCCCCc-
Confidence 3444333332 23678888999999999776444 44444333322211 1111110 11100111222211
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCCC-C-C-CcccccccccCchHHHHHHHHHHHhcc-Cccccc-cCccccc-ccccCCC
Q 035612 309 FAEKMVLAVFGMLIALWMTRSITDD-I-P-GWGALFNDRAGDGTASVSCDGNIVVHN-SEHEAK-GEKLMDW-NKCKKLP 382 (534)
Q Consensus 309 ~~e~~~l~~~~~~i~l~~~~~~~~~-~-~-~~~~~~~~~~~~~~va~l~~~ll~~l~-~~~~~~-~~~~l~~-~~~~~v~ 382 (534)
...+....+-+++.......+. . + +.-...-.+.++..++++.++++.++. ..+.++ .+.+.++ ++.-+--
T Consensus 229 ---~~s~~~illPi~LI~~~~~~~~~~~~~~~~~~~l~f~g~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~ 305 (445)
T PRK09921 229 ---GATLFTVLLPIGLMLVKTVAELNMAKEGTLYTLLEFIGNPITAMFIAVFVAYYILGIRQHMGMGTLLTHTENGFGSI 305 (445)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 2222111111222211111000 0 0 000001123467778888877765421 101100 0111110 1111222
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH-HhchHHHHHH----HHHHHHHHHHHH
Q 035612 383 WNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIIT-EFTSNNATTT----LVLPLLIQIAKT 457 (534)
Q Consensus 383 w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt-~f~Sn~a~~~----il~Pi~~~la~~ 457 (534)
-.++...|++-++++.++++|..|.+++.+... +.|+.+.. ++++.++. ...|.+.... ++.|.+ + ..
T Consensus 306 ~~illi~GaGGafg~Vl~~sg~~~~i~~~l~~~-~~~pl~~~---~liaa~l~~a~GSaTva~~taa~i~~p~l-~--~~ 378 (445)
T PRK09921 306 ANILLIIGAGGAFNAILKSSGLADTLAVILSNM-HMHPILLA---WLVALILHAAVGSATVAMMGATAIVAPML-P--LY 378 (445)
T ss_pred HHHHHHHhccHhHHHHHHhCCHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHh-h--cc
Confidence 446778888889999999999999999999876 34554432 23333333 4467776665 666664 2 12
Q ss_pred cCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
.|+||..+ .++++++.-...++..+.-.++.+..+++.||-+|.-.+.+.+..++.......
T Consensus 379 ~g~~p~~l--vlai~aGsl~~shvNDs~fW~~~~~~glt~k~t~k~~t~~~~i~~~~~~~~~~~ 440 (445)
T PRK09921 379 PDISPEII--AIAIGSGAIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGTFL 440 (445)
T ss_pred CCCCHHHH--HHHHhcCCcccccCCCCccHHHHHHhCCCHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 38999876 344555544667776776677777888999999999777777766665555444
No 53
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=99.68 E-value=2.1e-15 Score=156.82 Aligned_cols=168 Identities=17% Similarity=0.300 Sum_probs=144.3
Q ss_pred CchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHH
Q 035612 346 GDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIA 424 (534)
Q Consensus 346 ~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~ 424 (534)
+...++++++.++.+. ++.+++| .++++|+++++++|++.++.+++++|+.+++++.+....+.+. ...
T Consensus 12 ~~~~~a~~~~~ll~~~---------g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~~~-~l~ 81 (384)
T cd01117 12 DRWAIALLGAALMLLF---------GVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGSPR-RLL 81 (384)
T ss_pred CHHHHHHHHHHHHHHh---------CCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCCHH-HHH
Confidence 4556666666555543 4678888 4789999999999999999999999999999999775544444 355
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHH
Q 035612 425 PIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKT 503 (534)
Q Consensus 425 ~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~ 503 (534)
..+++++.+++.+.||++++.++.|++..++++.|.+|..+.+...++++.+ ..+|+|+++|.+..+.+++++.||.+.
T Consensus 82 ~~~~~~~~~ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~ 161 (384)
T cd01117 82 FLLVLLSGILSALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAA 161 (384)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999996 899999999999999889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 035612 504 GLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 504 g~~~~ii~~ii~~~~~~~~~ 523 (534)
++|..++++++..+..+.+.
T Consensus 162 ~~p~~i~~~~~~~~~~~~~~ 181 (384)
T cd01117 162 MAPLALLGLLLLLILLLVLF 181 (384)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 99999998887776666553
No 54
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=99.66 E-value=1e-12 Score=136.77 Aligned_cols=363 Identities=15% Similarity=0.064 Sum_probs=217.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhh
Q 035612 130 ALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYC 209 (534)
Q Consensus 130 ~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~ 209 (534)
....||||+.+...++.+++..+ +....+.+...++|...|+.+ ...+.|+...+...+|+||
T Consensus 97 vGvae~tG~i~a~i~~~v~~~p~------~~~t~ivv~~gv~s~~asdaG-~vvl~PL~a~if~a~Gr~P---------- 159 (513)
T TIGR00819 97 AGIAEKSGLIPALMRKLASHSNA------KLASFMVLFIAFFSHIASDAA-LVILIPLGALIFHALGRHP---------- 159 (513)
T ss_pred HHHHHHhcHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHcCCCh----------
Confidence 68899999999999999988543 233334444555555544443 4889999999999999998
Q ss_pred hHHHHHHHHHhhhccc-cccccchhHHHHHHHHhhhCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 035612 210 KAVVLGVIYSAAVGGM-STLTGTGVNLILVGMWKTYFP---EANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSG 285 (534)
Q Consensus 210 ~~l~l~i~~aa~igg~-~t~~g~~~n~i~~~~~~~~~~---~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~ 285 (534)
...+++++++..+|+ +.+.-++.|.+..|..++... .+.+++...=+.+.....++...+.+++.-+.--||...
T Consensus 160 -laGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~n~~F~~~s~~vl~~v~~~vt~Kv~ePrl~~ 238 (513)
T TIGR00819 160 -LAGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAAAAFHPDMHVGPEANWFFMAASTFVIAIIGGFITDKIIEPQLGP 238 (513)
T ss_pred -HHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHhcCCCcccCccccHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 355666776665655 335556788888888776521 112233322222333333333344444333222222211
Q ss_pred CcchhhhhHHHHHHHHhhcCCCchhHHHHHHH-------HHHHHHHHhhcccCCCCC--CcccccccccCchHHHH----
Q 035612 286 PALSEYLDKANLKRELDMLGPMAFAEKMVLAV-------FGMLIALWMTRSITDDIP--GWGALFNDRAGDGTASV---- 352 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~-------~~~~i~l~~~~~~~~~~~--~~~~~~~~~~~~~~va~---- 352 (534)
.++ +.+..+++.++..++|.+||+.+.. ++..+++.+.++. +... .-++.++.-..++.+..
T Consensus 239 --~~~--~~~~~~~~~~~~~~~t~~EkkgLr~Ag~~~l~fia~l~ll~~P~~-g~LR~~~tG~l~~SPf~~~iipii~~~ 313 (513)
T TIGR00819 239 --WQG--DLNQDEKDIRHLNEITELERFGLIIAGVVFIAFIAAIALMIIPAD-GILRDPENGLVAGSPFIKGIVPFIFLF 313 (513)
T ss_pred --CCc--ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCCCccCChHHHhHHHHHHHH
Confidence 111 1111101122345689999887655 5544444444222 1111 00111100000122222
Q ss_pred --HHHHHHHhccCccccccCcccccccc-c------CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-h--ccccH
Q 035612 353 --SCDGNIVVHNSEHEAKGEKLMDWNKC-K------KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-L--EAAPY 420 (534)
Q Consensus 353 --l~~~ll~~l~~~~~~~~~~~l~~~~~-~------~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l--~~~~~ 420 (534)
+.+++..+..+ ...+.+|+ + +---+.+.+++-+-.+...++++++.++++..... + .+.+.
T Consensus 314 Fli~givyG~~~g-------~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~ 386 (513)
T TIGR00819 314 FALPGIAYGIATR-------SIRGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAG 386 (513)
T ss_pred HHHHHHHHHhhcC-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCh
Confidence 22222222221 12344443 1 11222334444444555789999999999998863 4 45566
Q ss_pred HHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhc----C-C
Q 035612 421 LAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT----T-G 493 (534)
Q Consensus 421 ~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~----~-g 493 (534)
....+.+.+++.+++.| .|.++..++++|++.|++..+|++|.....+.-++.+.. .++|.+ |.-.+..+ + .
T Consensus 387 ~~~~i~~~l~~~~iNlfI~S~Sgkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiItP~~-~y~~lil~~~~~y~k 465 (513)
T TIGR00819 387 IPAFIGFALICAFICLFIASASAIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIAPMM-PFFGLFLAFLMKYKK 465 (513)
T ss_pred HHHHHHHHHHHHHHHheeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhccCc-chHHHHHHHHHHhcc
Confidence 66666788888888877 899999999999999999999999999999999999988 566663 22233333 2 2
Q ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 494 HIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 494 ~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+......+...+|+++..++........|+
T Consensus 466 ~~g~Gtl~s~mlPysi~~l~~w~~l~~~w~ 495 (513)
T TIGR00819 466 DAGLGTLISLMLPYPAFFLIAWIALFCAWV 495 (513)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998888887777775
No 55
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=99.65 E-value=1.1e-12 Score=133.79 Aligned_cols=362 Identities=14% Similarity=0.118 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhC
Q 035612 117 DDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNL 195 (534)
Q Consensus 117 ~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~ 195 (534)
.+....++...-.+..|++.|..+.+.+...|-.++- .+|+.++...++++.++|.++ |.+...++++-...++..+.
T Consensus 74 ~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~i-k~pYlll~~~~llg~llsl~IpSAaGLa~lLmatl~PvLi~~ 152 (455)
T PRK09804 74 AGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLI-RSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSL 152 (455)
T ss_pred ccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHc
Confidence 4677888888888999999999998888777665442 268888888999999999999 88888889999999999999
Q ss_pred CCCCcchhhhhhhhhHHHHHHHHHhhhccc-cccccchhHHHHHHHHhhhCCCCCCcchHHHH-HHHHHHHHHHHHHHHH
Q 035612 196 PEVPLQSTLVRKYCKAVVLGVIYSAAVGGM-STLTGTGVNLILVGMWKTYFPEANPISFSTWF-CFGFPLALVIFVALWA 273 (534)
Q Consensus 196 g~~~~~~~~~~~~~~~l~l~i~~aa~igg~-~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~-~~~~p~~li~~~~~~~ 273 (534)
|.+|. . +.+.-++.+.. .+|. ++.|..+++ ..+++..||+ .+-.|..+..++...+
T Consensus 153 Gvs~~------------~-AaaVia~t~~i~~gP~-s~~~v~aA~--------~~g~~v~~y~~~~q~p~~i~~i~~iai 210 (455)
T PRK09804 153 GVSRL------------S-AVAVIATTMSIEWGIL-ETNSIFAAQ--------VAGMKIATYFFHYQLPVASCVIISVAI 210 (455)
T ss_pred CCCHH------------H-HHHHHHhhhcccCCCC-CchHHHHHH--------HcCCChhheeeeccHHHHHHHHHHHHH
Confidence 99872 1 22222211111 2233 334444443 2356777776 5666666544444333
Q ss_pred H----HHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHH-HHHHHHHHHh-hcccCCCCCCcccccccccCc
Q 035612 274 I----LCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLA-VFGMLIALWM-TRSITDDIPGWGALFNDRAGD 347 (534)
Q Consensus 274 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~-~~~~~i~l~~-~~~~~~~~~~~~~~~~~~~~~ 347 (534)
. -++.-||+++.+ ++ ++ .+++.++..| ....+. ++-+.+++.. +.+.... ++. .+ +
T Consensus 211 ~h~fwqr~~Dkk~~~~~--~~---~~-~~~~~~~~~p----~~YAlLP~lPliLil~~~f~~~~~~-~~i------~l-~ 272 (455)
T PRK09804 211 SHFFVQRAFDKKDKNIN--HE---QA-EQKALDNVPP----LYYAILPVMPLILMLGSLFLAHVGL-MQS------EL-H 272 (455)
T ss_pred HHHHHHHHHHhhccccc--cc---cc-ccccccccCc----hHHHHHHHHHHHHHHHHHhhccccc-Cce------ee-c
Confidence 2 222222221111 11 00 0011111111 122222 2111111110 1111010 000 11 2
Q ss_pred hHHHHHHHHHHHhccC-ccccccCcccc-ccc----ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHH
Q 035612 348 GTASVSCDGNIVVHNS-EHEAKGEKLMD-WNK----CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYL 421 (534)
Q Consensus 348 ~~va~l~~~ll~~l~~-~~~~~~~~~l~-~~~----~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~ 421 (534)
-..+++.+..+.++.+ .+.++.+...+ -+. +.+.=-+++-++.++-.++.+++..|+.|.+-+..++.+..+ .
T Consensus 273 v~~am~is~~ia~l~e~ir~r~~k~~~~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g~g~-~ 351 (455)
T PRK09804 273 LVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGG-I 351 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCCCch-H
Confidence 2344444444333321 01111121211 111 224444577788888889999999999999999998765433 3
Q ss_pred HHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHH
Q 035612 422 AIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQD 499 (534)
Q Consensus 422 ~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~ 499 (534)
...+++..++.+.+.. .|++|....+.|.+-++|.++|+||..+.++..++++.+ .++|+ ++.-..+.|..+++.-|
T Consensus 352 ~~~lv~~~i~~l~a~l~GSGnAaffAF~~lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPV-agviIavAg~a~vSP~e 430 (455)
T PRK09804 352 GVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPI-TAVVVVTSGIAGVSPFA 430 (455)
T ss_pred HHHHHHHHHHHHHHhhhcCchHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHhhccccCch-hhHHhhhccccCCCHHH
Confidence 3334555566655555 799999999999999999999999999999999999999 99999 46667777888999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 035612 500 MIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 500 ~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
..|...+..+.+.++..+..+.
T Consensus 431 iVKRTavPml~g~i~~~i~~~~ 452 (455)
T PRK09804 431 VVKRTAIPMAVGFVVNMIATIT 452 (455)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999888887755543
No 56
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=2.7e-13 Score=129.75 Aligned_cols=367 Identities=15% Similarity=0.120 Sum_probs=238.8
Q ss_pred hHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Q 035612 108 ADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAA-VIMMP 186 (534)
Q Consensus 108 ~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~-~i~~P 186 (534)
+++.+....||+..-+.-...++..+||||+.|++-+.+-+.+|+- +..+-....++++++..-..-++++ ..|--
T Consensus 55 p~Ri~GiMsN~tLlAIPfF~fMG~vlErsglae~ll~tig~lfg~v---~gglA~avi~VgallaatTGvVaAsVvaMGl 131 (447)
T COG4664 55 PQRIFGIMSNDTLLAIPFFTFMGLVLERSGLAEDLLETIGQLFGPV---RGGLAYAVIIVGALLAATTGVVAASVVAMGL 131 (447)
T ss_pred HHHHHHHhcCCeeeeeHHHHHHHHHHHhcchHHHHHHHHHHHhCCC---CCchhhHHHHHHHHHHHhhchHHHHHHHhhh
Confidence 5777888899999999999999999999999999999999999863 3456667777788887766555544 56777
Q ss_pred HHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q 035612 187 VATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALV 266 (534)
Q Consensus 187 i~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li 266 (534)
|..++..++|+|++ +.-++..++ |..+-.+..+.-+++. .+ .-+.|.+|.+..++.+++.
T Consensus 132 ISlpiMLryGYd~~-----------lAsGvIaAs--GTLgqiIPPSlvLIVl---ad----qlG~SVgdly~gal~PGl~ 191 (447)
T COG4664 132 ISLPIMLRYGYDRK-----------LASGVIAAS--GTLGQIIPPSLVLIVL---AD----QLGRSVGDLYAGALIPGLM 191 (447)
T ss_pred hcchHHHHhCCCcc-----------ccceeEecC--ceeeeecCcceeeeee---HH----hhCCcHHHHHHHhhhhhHH
Confidence 78889999999873 111222121 3334444333233322 22 2377999999999888876
Q ss_pred HHHHHHHHHH--HHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchh-HHHHH------HHHHHHHHHHhhcccCCCCCCc
Q 035612 267 IFVALWAILC--LFYCSRGSGPALSEYLDKANLKRELDMLGPMAFA-EKMVL------AVFGMLIALWMTRSITDDIPGW 337 (534)
Q Consensus 267 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-e~~~l------~~~~~~i~l~~~~~~~~~~~~~ 337 (534)
.......++. -+.||+. .++++++..+ ++.-.++ .++++ .+++..+++-++-..
T Consensus 192 l~~~y~~yili~a~l~P~~-aPaLP~ear~---------~~~~~~~l~~~vv~~~iPplvLi~lVLGtIf~Gi------- 254 (447)
T COG4664 192 LVGLYALYILIMAILRPKS-APALPLEART---------LGGSGRQLVKRVVQSLIPPLVLIFLVLGTIFFGI------- 254 (447)
T ss_pred HHHHHHHHHHHHHHhCccc-CCCCCHHHhh---------ccccHHHHHHHHHHHhcchHHHHHHHHHHHHhcc-------
Confidence 6544433332 2344433 3344432111 1100000 01111 111222222222111
Q ss_pred ccccccccCchHHHHHHHHHHHhccCccccccCcccccccc-------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 035612 338 GALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-------KKLPWNIILLLGAGFAIADGVRTSGLADDLSK 410 (534)
Q Consensus 338 ~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~ 410 (534)
.+.. +.+.+...++.++.... +.+|||.. .|+.--+++++.|.-.++-.+...|-..|+-+
T Consensus 255 aTpT----E~gA~G~~GA~~LA~~~--------~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~ 322 (447)
T COG4664 255 ATPT----EGGAVGAVGALLLALAN--------GRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEH 322 (447)
T ss_pred cCCc----ccchhhHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHH
Confidence 0000 12334455555554432 57888664 36667788899999999999999999999999
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHhh
Q 035612 411 ALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGF 490 (534)
Q Consensus 411 ~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~ 490 (534)
.+.++.+.+. .++++..++..++..|.+-.-.+.+..|++.++|+.+|+|+..+...++.....+|++|.=.......-
T Consensus 323 ~l~~lpgg~i-gFli~~~~~iF~LgffldffEiafIivPllaPva~~lgIDliwfGVll~~NlQtSFl~PPfgfslfYLr 401 (447)
T COG4664 323 LLTNLPGGEI-GFLIVSNILIFFLGFFLDFFEIAFIIVPLLAPVADKLGIDLIWFGVLLGVNLQTSFLHPPFGFSLFYLR 401 (447)
T ss_pred HHhcCCCCce-eeehHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHhhhhhccCCCchhhHHHhc
Confidence 9988766543 334466677778888899999999999999999999999998877766666666788876444333333
Q ss_pred c--CCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 035612 491 T--TGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 527 (534)
Q Consensus 491 ~--~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~~~ 527 (534)
| ...++..|.++-..|+..+.+++....+.+.+...+
T Consensus 402 gVAp~~VTt~qIy~G~vPfiliqvl~~~~~i~fP~~v~~ 440 (447)
T COG4664 402 GVAPPSVTTGQIYRGAVPFILIQVLVVILIIIFPGMVLW 440 (447)
T ss_pred cCCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3 247899999999999988888877776666665443
No 57
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=99.64 E-value=2e-15 Score=157.71 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=144.3
Q ss_pred CchHHHHHHHHHHHhccCccccccCcccccccc-cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHH
Q 035612 346 GDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIA 424 (534)
Q Consensus 346 ~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~ 424 (534)
+.+.++++...++.+. ++.++||. ++++|++++++++++.++.+++++|+.+++++.+.+..+.++.. .
T Consensus 10 ~~~~~al~~~~~l~~~---------g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~ 79 (396)
T cd00625 10 PRAVVALLGAVLLVLL---------GVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-L 79 (396)
T ss_pred CHHHHHHHHHHHHHHh---------cCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-H
Confidence 3455666655555443 47889884 78999999999999999999999999999999987543333333 3
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHH
Q 035612 425 PIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP-LLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIK 502 (534)
Q Consensus 425 ~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p-~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k 502 (534)
+.+...+.+++.|.||++++.++.|++.+++++.|.|| ..+++...++++.+ +.+|+|+++|.++.+.++++++||+|
T Consensus 80 ~~~~~~~~~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~~~~ 159 (396)
T cd00625 80 LLLMLLTAALSAFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLDFLA 159 (396)
T ss_pred HHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHHHHH
Confidence 45667788889999999999999999999999999999 88888888998885 99999999999999988999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh
Q 035612 503 TGLPLKIAGIAAMAFLMPTLGAYVF 527 (534)
Q Consensus 503 ~g~~~~ii~~ii~~~~~~~~~~~~~ 527 (534)
.+.+..++..++...+.+++.+.-.
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~ 184 (396)
T cd00625 160 FMAPPALGLLLLLLGLLYLLFRKKL 184 (396)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888777654433
No 58
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.9e-14 Score=146.48 Aligned_cols=168 Identities=20% Similarity=0.309 Sum_probs=148.2
Q ss_pred chHHHHHHHHHHHhccCccccccCcccccccc-c--CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHH
Q 035612 347 DGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC-K--KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAI 423 (534)
Q Consensus 347 ~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~-~--~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~ 423 (534)
.+..+.+++.+..++ ++.+++|. + ..+|++++++.|.+.+...++++|+.||.+..+.+.+..++..+
T Consensus 26 ~~~~a~~Ga~l~l~~---------giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v~~s~g~~~~L 96 (424)
T COG1055 26 RAWAALLGALLALFL---------GIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMVKRSKGSGLKL 96 (424)
T ss_pred hHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCcchH
Confidence 455666666555554 47888885 3 69999999999999999999999999999999987765545555
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHH
Q 035612 424 APIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIK 502 (534)
Q Consensus 424 ~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k 502 (534)
...+.+++.+++.|.+|+.++.++.|++..++++.|.||.++.+...++++.+ ..||+|+|+|.+.....++++.||.+
T Consensus 97 ~~~l~ll~a~~SA~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gisF~~f~~ 176 (424)
T COG1055 97 LLLLVLLGALLSAFLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGISFNDFLA 176 (424)
T ss_pred HHHHHHHHHHHHHHHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHHHHHhcCCCHHHHHH
Confidence 56888999999999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 035612 503 TGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 503 ~g~~~~ii~~ii~~~~~~~~~ 523 (534)
...+.+++++++...+.+.+.
T Consensus 177 ~m~~p~l~~li~~~~vl~~~~ 197 (424)
T COG1055 177 NMFPPSLISLIATLVVLYLLF 197 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888877765
No 59
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=99.59 E-value=5.8e-14 Score=144.61 Aligned_cols=186 Identities=19% Similarity=0.259 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccc---cCCCchHHHHHHH
Q 035612 315 LAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKC---KKLPWNIILLLGA 391 (534)
Q Consensus 315 l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~---~~v~w~~i~l~~~ 391 (534)
..+|.+++++.+.|+. + .+.++.++.+++++.+. ++++++|. .+..|++.+++.|
T Consensus 3 ~~if~~tl~~vi~rP~-~------------l~~~~~A~~GA~l~l~~---------G~v~~~d~~~v~~~~~~~~l~~i~ 60 (423)
T PF02040_consen 3 IAIFLLTLLLVIWRPR-G------------LPEAVWAVLGAALALAL---------GVVPLSDALAVWGIVWDVTLFFIA 60 (423)
T ss_pred HHHHHHHHHHHhccCC-C------------CChHHHHHHHHHHHHHh---------CCcCHHHHHHHHHHhccHHHHHHH
Confidence 5677777777777765 3 13456777777665544 57899885 3578999999999
Q ss_pred HHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh---HHHHHH
Q 035612 392 GFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP---LLLMVP 468 (534)
Q Consensus 392 ~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p---~~~~l~ 468 (534)
...++..++++|+.||++..+.+.++.+...+...+++++.++|.|.||++++.++.|++..++++.|.+| .++.++
T Consensus 61 ~~vis~~ld~~G~F~~~A~~~a~~a~g~~~rLf~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a 140 (423)
T PF02040_consen 61 MIVISELLDEAGFFDWLALHAARWARGSGRRLFLLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFA 140 (423)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHH
Confidence 99999999999999999999987765555555567888999999999999999999999999999999986 688888
Q ss_pred HHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 469 GAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 469 ~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
..+.++.+ ..+|+|+++|.+.++..++++.||.+..++.+++++++...+++.+
T Consensus 141 ~~~iAntASl~LpvSNltNLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~ 195 (423)
T PF02040_consen 141 CAFIANTASLLLPVSNLTNLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLY 195 (423)
T ss_pred HHHHhhhhhccccccCcHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888885 9999999999999999999999999999999999888877666543
No 60
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=99.58 E-value=2e-11 Score=126.71 Aligned_cols=374 Identities=14% Similarity=0.071 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCc
Q 035612 121 ALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPL 200 (534)
Q Consensus 121 ~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~ 200 (534)
=+++-.++=....||||+.+...++.+++..+ +......+...++|...++. ....+.|+...+.+.+|++|
T Consensus 92 G~vlv~mlgvgvae~sG~i~a~i~~~v~~~p~------~~it~ivvf~gv~s~~asda-GyVvl~PL~a~if~a~Gr~P- 163 (508)
T PRK11339 92 GAILALVLGAGLAERVGLLPALMVKMASHVNA------RYASYMVLFIAFFSHISSDA-ALVIMPPMGALIFLAVGRHP- 163 (508)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHcCCCh-
Confidence 33343444447889999999999999988643 22333344445555544443 34889999999999999998
Q ss_pred chhhhhhhhhHHHHHHHHHhhhccc-cccccchhHHHHHHHHhhhC---CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 201 QSTLVRKYCKAVVLGVIYSAAVGGM-STLTGTGVNLILVGMWKTYF---PEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 201 ~~~~~~~~~~~l~l~i~~aa~igg~-~t~~g~~~n~i~~~~~~~~~---~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
...+++++++..+|+ +.++-++.-.+..|.-++.. ..+.+++...=+.+.....++...+.+++..
T Consensus 164 ----------laGia~~fagvs~GfsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~N~~F~~~s~~vl~~v~~~vt~ 233 (508)
T PRK11339 164 ----------VAGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMASSVVVLTIVGGLITD 233 (508)
T ss_pred ----------HHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHhcCCCcccCccccHHHHHHHHHHHHHHHHHHhh
Confidence 255666666655554 33333333456666665542 1112333322222333334444444444444
Q ss_pred HHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHH-------HHHHHHHHHHHhhcccCCCC--CCcccccccccCc
Q 035612 277 LFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMV-------LAVFGMLIALWMTRSITDDI--PGWGALFNDRAGD 347 (534)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~-------l~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~ 347 (534)
++..||.... + ++ +.++..++|.+||+. +.++++.++..+.++. +.. |.-++.+..-.-+
T Consensus 234 k~vePrlg~~--~----~~----~~~~~~~lt~~ekkgLr~Ag~~~l~~~~~i~~l~lP~~-g~Lr~~~tG~l~~Sp~~~ 302 (508)
T PRK11339 234 KIIEPRLGQW--Q----GN----SDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPEN-GILRDPINHTVMPSPFIK 302 (508)
T ss_pred heeCCCCCcc--c----cc----cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC-cccccCCCCCccCChHHH
Confidence 4444443211 0 00 111234578899887 5666665555554332 111 0001100000011
Q ss_pred hHHHHHHHHHHHhccCccccc-cCcccccccc--------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh---
Q 035612 348 GTASVSCDGNIVVHNSEHEAK-GEKLMDWNKC--------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL--- 415 (534)
Q Consensus 348 ~~va~l~~~ll~~l~~~~~~~-~~~~l~~~~~--------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l--- 415 (534)
+.+..+. ++|++++...-. .....+.+|+ +++.--.++. .+.--+-..++.++..+.++......
T Consensus 303 siv~~i~--~~Fli~GivyG~~~g~iks~~Dv~~~m~~g~~~m~~~ivl~-F~~Aqfia~F~~snlG~ilav~gA~~L~~ 379 (508)
T PRK11339 303 GIVPLII--LFFFVVSLAYGIATRTIRRQADLPHLMIEPMKEMAGFIVMV-FPLAQFVAMFNWSNMGKFIAVGLTDILES 379 (508)
T ss_pred hHHHHHH--HHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222221 122222110000 0123455553 2221111221 11222234567788888877665532
Q ss_pred ccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhc--
Q 035612 416 EAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT-- 491 (534)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~-- 491 (534)
.+.+.....+.+.+++.+++.| .|.++-.+++.|++.|+...+|++|...-++.-++.+.. .++|. ++...++.+
T Consensus 380 ~~l~~~pl~i~~ill~a~iNlfI~SgSakwai~aPIfVPm~~llGisPe~tq~AyRiGDs~TNiItPl-~~y~~lil~~~ 458 (508)
T PRK11339 380 SGLSGIPAFVGLALLSSFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPV-SPFVPLFLGFL 458 (508)
T ss_pred CCCCchHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHccchhhhcCCc-hHHHHHHHHHH
Confidence 1233333345677888888877 899999999999999999999999999989999999988 66776 344433333
Q ss_pred ---CCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035612 492 ---TGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGT 529 (534)
Q Consensus 492 ---~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~~~~~ 529 (534)
..+....+++|..+|+++..++...+.+..|+ .+|+
T Consensus 459 ~~y~k~~g~Gtlis~mlPysi~~lv~w~~ll~~w~--~~gl 497 (508)
T PRK11339 459 QRYKPDAKLGTYYSLVLPYPLIFLVVWLLMLLAWY--LVGL 497 (508)
T ss_pred HHhccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhCC
Confidence 23689999999999999999888888888875 4553
No 61
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=99.58 E-value=4.9e-11 Score=122.40 Aligned_cols=360 Identities=13% Similarity=0.060 Sum_probs=205.7
Q ss_pred HHHHHHhh-cCChhhHHHHHHHHHHHhccCChHHHHh-----hhcchHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHh
Q 035612 78 VFAWWLTE-AVPMPITSMAPLFLFPLFGISSADTVAH-----SYMDDVIALVLGSFILALAVEHY-NIHKRLALNITILF 150 (534)
Q Consensus 78 ~i~~w~~~-~ip~~~~al~~~~l~~l~gi~~~~~v~~-----~~~~~~i~li~g~~~l~~~l~~t-Gl~~ria~~i~~~~ 150 (534)
+++..+.. ++|.++..+...+++.+..-++++++.+ +...+.+-++++...+...++++ |..||+++.+.+++
T Consensus 11 ~ii~li~~~K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~ 90 (387)
T TIGR00529 11 VIVVLIVFKKVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIF 90 (387)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444 8999999998888887777788888763 33346666666666666688888 99999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccccccc
Q 035612 151 CGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTG 230 (534)
Q Consensus 151 g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g 230 (534)
|++ + ..+...+++. + .-...+.++.|++.+++++.+.++. ........+-.+.=...|.
T Consensus 91 g~~--~---~~~ap~liG~-l----Pv~~g~vilaPlv~~la~~~~~s~~----------~~~~~~~~~~~v~h~~~Pp- 149 (387)
T TIGR00529 91 SKN--S---DSFVPALIGL-M----PMPGGALFSAPMVKNSLKEERINPE----------KLTVKNYWFRHTWEFFWPI- 149 (387)
T ss_pred Ccc--c---HHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHHhCcCHH----------HHHHHHHHHHHHHHhhcCC-
Confidence 753 2 2222222222 2 2235567799999999999988763 1333333333332222232
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchh
Q 035612 231 TGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFA 310 (534)
Q Consensus 231 ~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 310 (534)
+|.-+.+.+ ..+.+.++...+++|.++...+..+++.. ++. .++. .+ ++ +++ |.
T Consensus 150 ~Pgpi~aa~--------~l~~~lg~~il~gl~i~i~~~i~G~~~~~---~~~--~~~~----~~----~~-~~~-~~--- 203 (387)
T TIGR00529 150 YPAVVLVSA--------LSGIHPGKVSLTLFPVFAIAFFLGWFFFN---GKQ--LPCL----SK----PR-NLF-DS--- 203 (387)
T ss_pred CchHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHc---Ccc--cccc----cc----cc-ccC-cc---
Confidence 233333332 23678999999999999998777665332 211 1110 00 00 111 11
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-c-cCCCchHHHH
Q 035612 311 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-C-KKLPWNIILL 388 (534)
Q Consensus 311 e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~-~~v~w~~i~l 388 (534)
-...+-+.... +.-+.... + . ..+.++.+.+. .... ..+ .+ +.++ + +...+.+++.
T Consensus 204 ~~~l~PI~lil-~~s~~~~~-~---~---------~~al~a~~l~~---~~~~-~~~-~~---~~~~~~~~al~~~illi 261 (387)
T TIGR00529 204 FFNLYPIIIVL-GTSVLILL-D---K---------LSGWFALLLST---SIYN-VFR-RR---YLLETLKRVFNKWIFLL 261 (387)
T ss_pred cHHHHHHHHHH-HHHHHHhc-C---h---------HHHHHHHHHHH---HHHH-hcc-HH---HHHHHHHHHHHHHHHHH
Confidence 01111111111 11111100 0 0 11222222221 1111 000 01 1112 2 4567779999
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 035612 389 LGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVP 468 (534)
Q Consensus 389 ~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~ 468 (534)
++++.++++.+++||+.|.+++.+... +.|+..+.+++..+....|- ...+++.+..|++.+.. -+.++....+
T Consensus 262 i~agg~fk~vL~~sGi~~~l~~~~~~~-~ip~~~l~~lia~ilg~~tG--a~it~agi~~Pll~~~~--~~~~~~~l~l- 335 (387)
T TIGR00529 262 LFAVMIYKVVIEHSGVGESIAAEFVSW-NLPPWILLILLPLVSGISTG--ITQAYVGISLPLLMEFF--SSAKYAVLTY- 335 (387)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcc--CchhHHHHHH-
Confidence 999999999999999999999998764 35655444333333333222 45556677888853211 2455555433
Q ss_pred HHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 469 GAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 469 ~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
+.+++.-..+|++.. -.+..++-+.+.+|.+|.-.+...+..+.
T Consensus 336 -a~g~g~~~~Shvnd~-fwl~~eyf~~~~~~~~k~~~~~~~~~~~~ 379 (387)
T TIGR00529 336 -MFGYGGVILSPVHLC-VVLSAEYFGVEVFKIYRKVLLPLVLTLIL 379 (387)
T ss_pred -HHHhhhhccCccccc-hhHhHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 334433467888777 77777777899999999877666655544
No 62
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=99.56 E-value=7.1e-12 Score=122.47 Aligned_cols=420 Identities=16% Similarity=0.195 Sum_probs=254.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHH
Q 035612 63 DGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRL 142 (534)
Q Consensus 63 ~~~~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ri 142 (534)
+.-..+|...+=|+++..+ ..++.|+....++++=.. +.|..+|+++......+.-.++.-+|+++...---.+.-.+
T Consensus 40 ~PfvaGWlLv~EFIFTLAM-ALKCYPLqpGGLLAiEAv-~iGmTsp~~v~hEi~~N~eViLLL~FMVAGIYFMK~lLlf~ 117 (515)
T PF06450_consen 40 GPFVAGWLLVAEFIFTLAM-ALKCYPLQPGGLLAIEAV-AIGMTSPEQVYHEIAANFEVILLLMFMVAGIYFMKQLLLFV 117 (515)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHhcCCCCCCcHHHHHHH-HHcCCCHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345788777777777654 678888887777766543 56889999999888776666666677777666666666666
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC---C--C------C--c---------
Q 035612 143 ALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLP---E--V------P--L--------- 200 (534)
Q Consensus 143 a~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g---~--~------~--~--------- 200 (534)
-.+++.+++ +...+.+.+++.++++|+|.+...+++..+.+......-+. . + . +
T Consensus 118 FTklLl~ir----SK~~LSL~Fc~~aAfLSAFLDALTV~AViIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~ 193 (515)
T PF06450_consen 118 FTKLLLKIR----SKIVLSLAFCFAAAFLSAFLDALTVTAVIISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNRE 193 (515)
T ss_pred HHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhhhhhheeeeEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHH
Confidence 666666654 34567789999999999999988888887777665443221 1 1 0 0
Q ss_pred chhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 035612 201 QSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAIL--CLF 278 (534)
Q Consensus 201 ~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~--~~~ 278 (534)
+-++-|.+-|.+++-.+.+..+||.+|++|-|+|+++.. ..+..|.|++..+.|.++-.++...+.. .-.
T Consensus 194 ~Le~FRaFLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~--------~agW~F~eFflrmaPVt~PVl~~Gl~tc~l~Ek 265 (515)
T PF06450_consen 194 DLEQFRAFLRSLMMHAAVGTALGGVMTMVGEPQNLIIAK--------QAGWDFGEFFLRMAPVTLPVLICGLLTCVLVEK 265 (515)
T ss_pred HHHHHHHHHHHHHHhcccchhhcceeeecCCchhhhhhh--------hcCCCHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 011235566788999999999999999999999999983 5689999999998877664433332222 223
Q ss_pred hcCCCCCCcchhhhhHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHH
Q 035612 279 YCSRGSGPALSEYLDKANLKR-ELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGN 357 (534)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~l 357 (534)
+|.-....++++.. ++.+++ +.++..+.++++|..+.+-.+. ..|..-.. . +| ....+.+.+..-++
T Consensus 266 ~~~fGYG~~lP~~V-r~iL~~~~~~~~~~rt~~~~~~L~vQa~~-~vwLi~~L-A--------~H-lA~VGlIGLsVIil 333 (515)
T PF06450_consen 266 FKWFGYGAKLPENV-RQILEEFDKEEDAKRTKQDKAKLIVQALI-GVWLIVAL-A--------FH-LAEVGLIGLSVIIL 333 (515)
T ss_pred hhhcCCcccCCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHH-H--------HH-HHHHhHHHHHHHHH
Confidence 33333334455432 222221 1222335677777666544332 23332111 0 00 00122233322222
Q ss_pred HHhccCccccccCcccccccc-----cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 035612 358 IVVHNSEHEAKGEKLMDWNKC-----KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISA 432 (534)
Q Consensus 358 l~~l~~~~~~~~~~~l~~~~~-----~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~ 432 (534)
.-.+. ++.+.+++ +..|... ++.--|+...++.+..+.+-+-+.....++..... .+++...
T Consensus 334 ~Taf~--------Git~EH~iGkAFeEaLPFTA--LL~VFF~vVaVI~dQ~LF~PiI~~VL~~~~~~Ql~---~fy~aNG 400 (515)
T PF06450_consen 334 ATAFC--------GITDEHAIGKAFEEALPFTA--LLVVFFAVVAVIIDQHLFTPIIQFVLSAEGSSQLA---MFYIANG 400 (515)
T ss_pred HHHhc--------CCcchhhhhHhHhhccchHH--HHHHHHHHHHHHhhhhhhHHHHHHHHcCCCccchh---HHHHhhh
Confidence 22232 34444333 3455544 44556777888888888888888876655444332 5678888
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCCCchhhHh-----hcC-----CCCCHHHHHH
Q 035612 433 IITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVG-----FTT-----GHIEIQDMIK 502 (534)
Q Consensus 433 ~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~-----~~~-----g~~~~~~~~k 502 (534)
++|...+|+=++.+-+-=+-..-++-.++...+=+ ++.+.|.|.-+|.-..||--+ ..+ -+.|..+|.+
T Consensus 401 lLS~iSDNVFV~TVYI~E~k~A~~~G~Is~~qf~~-LAVAINTGTNlPSVATPNGQAAFLFLLTSalAPLirLSYgrMV~ 479 (515)
T PF06450_consen 401 LLSMISDNVFVATVYINEVKAALDAGVISREQFDL-LAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVW 479 (515)
T ss_pred hHHhhccceeEEEEeHhhHHHHHHcCCcCHHHHhh-HHhhhhcCCCCCcCcCCCchhHHHHHHHHhhHHHHHHhHhhHHh
Confidence 99999988755544333222222222345444322 234455553445444444222 111 3789999999
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 035612 503 TGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 503 ~g~~~~ii~~ii~~~~~~~~ 522 (534)
..+|++++..++......++
T Consensus 480 MAlPYTiVl~~vGl~~v~~~ 499 (515)
T PF06450_consen 480 MALPYTIVLTLVGLLAVEFL 499 (515)
T ss_pred HhccHHHHHHHHHHHHHHHh
Confidence 99999998777776655544
No 63
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=99.55 E-value=5.6e-13 Score=138.25 Aligned_cols=179 Identities=9% Similarity=0.060 Sum_probs=151.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhc---cCChHHHHhh-----hcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 78 VFAWWLTEAVPMPITSMAPLFLFPLFG---ISSADTVAHS-----YMDDVIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 78 ~i~~w~~~~ip~~~~al~~~~l~~l~g---i~~~~~v~~~-----~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
+++.+. ++.+.+++++..+..+.+ -.+.++++.. ..|+++ +.|.|++.++++++|+.+.+++++.+.
T Consensus 312 li~~f~---l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~ 386 (513)
T PRK09547 312 LIVALA---LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQA 386 (513)
T ss_pred HHHHHH---HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 444444 789999999887777665 4778888888 888888 999999999999999999999999998
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCC-CcchhhhhhhhhHHHHHHHHHhhhcccccc
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEV-PLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 228 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~-~~~~~~~~~~~~~l~l~i~~aa~igg~~t~ 228 (534)
.+++ + ...+...++++|++++|.+.++.|.|++.... +.|.. ++ . -..+..+++.++|+||.+||
T Consensus 387 ~~~~---~---~~~~~~~sgllSaiiDNVp~~~~~ip~v~~~~-~~g~~~~~------~-~~~L~~ALa~Ga~Lggn~T~ 452 (513)
T PRK09547 387 SEHA---Q---LSLFYIANGLLSSISDNVFVGTVYINEAKAAL-ESGAISRK------Q-FELLAVAINTGTNLPSVATP 452 (513)
T ss_pred cCCC---h---HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-hcCCCccc------c-chHHHHHHHHhcccchhhhH
Confidence 7753 2 56788899999999999999999999999988 66652 21 0 12478899999999999999
Q ss_pred ccchhHHHHH-HHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035612 229 TGTGVNLILV-GMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFY 279 (534)
Q Consensus 229 ~g~~~n~i~~-~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~ 279 (534)
+|...|++.. +.+++ +.++||++++++|+|.++++.++..+++.+..
T Consensus 453 iGasAnlv~~~~~~~~----g~~isf~~~~k~glP~tlv~~~v~~~~v~~~~ 500 (513)
T PRK09547 453 NGQAAFLFLLTSALAP----LIRLSYGRMVWMALPYTIVLTLVGLLAVEFTL 500 (513)
T ss_pred HHHHHHHHHHHHHHhC----CCcccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 77774 67999999999999999999999888776654
No 64
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.1e-12 Score=132.64 Aligned_cols=194 Identities=20% Similarity=0.287 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC-------ChhhHHHHHH-HHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHH
Q 035612 68 SRNMLGVLAWVFAWWLTEAV-------PMPITSMAPL-FLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIH 139 (534)
Q Consensus 68 ~~~~l~i~~~~i~~w~~~~i-------p~~~~al~~~-~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~ 139 (534)
-.+|...+.++++++++..+ +++++|+++. .++.+...-+.+.+.+...|++..++.++|++-.+++|.|+.
T Consensus 469 l~k~~~aL~fviv~F~l~svp~~~~gl~LgW~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli 548 (685)
T KOG2639|consen 469 LIKCLRALWFVIVCFFLQSVPSLHMGLSLGWTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLI 548 (685)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHhcCCCccHHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHH
Confidence 36678888888888887754 5789999854 555666777777788899999999999999999999999999
Q ss_pred HHHHHHHHHH---hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh--CCCCCcchhhhhhhhhHHHH
Q 035612 140 KRLALNITIL---FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQN--LPEVPLQSTLVRKYCKAVVL 214 (534)
Q Consensus 140 ~ria~~i~~~---~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~--~g~~~~~~~~~~~~~~~l~l 214 (534)
+++.+..... ++.+ .+.-.-++.+...+++.|+|++|.+.+++|.++..+...+ .|.+. .+++.
T Consensus 549 ~~l~dlte~vil~v~e~-~~~~vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl----------~pliW 617 (685)
T KOG2639|consen 549 EWLGDLTEPVILSVGES-YRLMVAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPL----------QPLIW 617 (685)
T ss_pred HHHHHhhhHHhhhcchh-hhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCc----------chHHH
Confidence 9998765554 3432 1112233445566899999999999999999999888764 34332 35788
Q ss_pred HHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035612 215 GVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 215 ~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
+..++++.||-+|++|+..|.++++..++. |.++||.++|++|+|.++..+.+...++
T Consensus 618 aL~~ga~~gGNgTLiGasANvv~A~iAeqH---GYkltF~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 618 ALALGACLGGNGTLIGASANVVAAGIAEQH---GYKLTFTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred HHHhhhhhcCCceeechhhHHHHHHHHHHc---CceEEehhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999988875 7899999999999999998777665443
No 65
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.50 E-value=7.4e-13 Score=135.97 Aligned_cols=150 Identities=19% Similarity=0.426 Sum_probs=130.9
Q ss_pred ccccccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 035612 371 KLMDWNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLP 449 (534)
Q Consensus 371 ~~l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~P 449 (534)
...+.++ .+.++|++++++.|.+. +++++++|+.|++++.+.+..+.++....+.+++++.++|.|.+|++++.++.|
T Consensus 40 ~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~~~~~~~~~~lS~~~~N~~~v~~~~P 118 (351)
T PF03600_consen 40 GVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLLLLLMLVTALLSAFLDNTTVVLIMIP 118 (351)
T ss_pred cccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcchHHHhhHH
Confidence 3456666 58999999999999999 999999999999999998776666544556788899999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCH--HHHHHHhHHHHHHHHHHHHHHHHH
Q 035612 450 LLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEI--QDMIKTGLPLKIAGIAAMAFLMPT 521 (534)
Q Consensus 450 i~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~--~~~~k~g~~~~ii~~ii~~~~~~~ 521 (534)
++.+++++.+++|..+.+++.++++.+ .+||+|+|+|.++.+..++++ .|+++.++|..++++++.....+.
T Consensus 119 i~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 193 (351)
T PF03600_consen 119 IVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGFDFFALGLPAVIVGLLVLIFILYF 193 (351)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 699999999998877777887 999999999988877776644443
No 66
>PLN00137 NHAD transporter family protein; Provisional
Probab=99.47 E-value=1.5e-12 Score=135.63 Aligned_cols=190 Identities=14% Similarity=0.075 Sum_probs=140.5
Q ss_pred chhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-ccCCC----
Q 035612 308 AFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLP---- 382 (534)
Q Consensus 308 ~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~---- 382 (534)
++++...+.+|+++..+.++++..+ ++-+..+++++.++.+.-. -+..+.++ .+.++
T Consensus 2 ~~~~~~~~~if~~~y~~i~~e~~~~------------i~~~~~al~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~ 63 (424)
T PLN00137 2 ANQGLAMALVFGAGYAGIIFEESLA------------FNKSGVALLMAVSLWVIRA------IGAPSLEIVTLELRHALA 63 (424)
T ss_pred CcchhHHHHHHHHHHHHHHHcchhh------------hhhHHHHHHHHHHHHHHHH------HhccchHHHHHHHHHHHH
Confidence 3456778889988888888874322 1234556665555533210 00113333 35677
Q ss_pred --chHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCC
Q 035612 383 --WNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHV 460 (534)
Q Consensus 383 --w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~ 460 (534)
|++++++.|++.+.+.++++|+.|+++..+.+. ++..+...+++++.++|.+.||++++.++.|+...+++..
T Consensus 64 ~~~~~i~~L~g~m~iv~~l~~~g~f~~~a~~~~~~---~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~-- 138 (424)
T PLN00137 64 EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDSITTR---SPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPS-- 138 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 999999999999999999999999999998764 4455566888999999999999999999999999988764
Q ss_pred ChHHH-HHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 035612 461 HPLLL-MVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 461 ~p~~~-~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~ 520 (534)
+|..+ .+..++++|.| ..||+|+|+|.++.+.+++++.|++..-.+..+++.++......
T Consensus 139 ~~~~~~~~~~~~aaNiGg~~TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~ 200 (424)
T PLN00137 139 EYRKLLGAVVVVAANAGGAWTPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMS 200 (424)
T ss_pred cchHHHHHHHHHhccccceeccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655 55678999996 99999999999999888999888665555555555544443333
No 67
>COG2056 Predicted permease [General function prediction only]
Probab=99.45 E-value=4.7e-10 Score=108.72 Aligned_cols=383 Identities=15% Similarity=0.178 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhccCChHHHHhhhcc--------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChh--HHHH
Q 035612 93 SMAPLFLFPLFGISSADTVAHSYMD--------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPP--LLLL 162 (534)
Q Consensus 93 al~~~~l~~l~gi~~~~~v~~~~~~--------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~--~l~~ 162 (534)
-.+..+.-.++|-++.+|..+.|.+ -.-+.++|.| +.++.|||+.+.+++++.++.+++..+.+ ..-.
T Consensus 25 L~isAlvaGl~~gl~l~eti~~f~~GlgG~a~vALSYalLGaf--AvaIsksGltd~l~~kvi~~i~~~~~~~~~~~~K~ 102 (444)
T COG2056 25 LIISALVAGLVGGLGLTETINAFISGLGGNANVALSYALLGAF--AVAISKSGLTDVLAKKVIRLLGGDESRRGKTLKKY 102 (444)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHccccccHHHHHHHHHHHHH--HHHHHhcChHHHHHHHHHHHhcCCccccchhhHHH
Confidence 3344445556777777777766644 1334455554 57899999999999999999986322211 1112
Q ss_pred HHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHH
Q 035612 163 GICGTTAFVSMWMHNV-----AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLIL 237 (534)
Q Consensus 163 ~~~~~~~~lS~~isn~-----a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~ 237 (534)
.+.++-.++|.+..|. |-.=++.|-...+..+++.|+ |.+...+.++-....+..|.|-+. +.
T Consensus 103 ~l~~~i~~~a~~SQNliPVHIAFIPilIPPLL~lfn~LkiDR----------R~vAc~ltFGL~apYi~LPvGFG~--IF 170 (444)
T COG2056 103 LLLLIILLIACFSQNLIPVHIAFIPILIPPLLSLFNKLKIDR----------RLVACVLTFGLTAPYILLPVGFGL--IF 170 (444)
T ss_pred HHHHHHHHHHHhcCCccceeeeeehhhhhHHHHHHHHhhhhH----------HHHHHHhhcccccceeEecchHHH--HH
Confidence 3333444455555443 333567777788888888775 444455555555556666766543 22
Q ss_pred HHHHhhhCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHH
Q 035612 238 VGMWKTYFP-EANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLA 316 (534)
Q Consensus 238 ~~~~~~~~~-~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~ 316 (534)
.+.+.+... .+.+++..+-...++.+++-+++-..+.+...|||+++-+. ++..+++...++++.... ++.+.++.
T Consensus 171 ~~ii~~n~~~a~~~~~~~~V~~am~ip~lgMi~GLl~ai~~~YrKpReY~~-~~~~~~~~~~~~~~~~~~--~~~~~alv 247 (444)
T COG2056 171 QSIILDNINAAGVSLSVNQVPKAMWIPGLGMIVGLLLAIFVSYRKPREYQT-NEIEEAENAIEDYAALEE--YKLALALV 247 (444)
T ss_pred HHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccc-cccchhhhhhhhhcchhh--HHHHHHHH
Confidence 344443321 25567777777777777777766665555555766542111 000111112222221111 33333333
Q ss_pred HHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccccccC-CCch------HHHHH
Q 035612 317 VFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNKCKK-LPWN------IILLL 389 (534)
Q Consensus 317 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~~~~-v~w~------~i~l~ 389 (534)
..+.+...-... ..+ .-....+.+.+.+++. ++.+|||.++ ++-+ +=|..
T Consensus 248 aiv~af~vQl~~-~~~--------------smilgal~gliv~~~~--------gv~~~ke~d~~~~~G~kmMa~IgFVM 304 (444)
T COG2056 248 AIVVAFAVQLLT-FTD--------------SMILGALAGLIVFFLS--------GVIKWKETDDVFTEGVKMMAFIGFVM 304 (444)
T ss_pred HHHHHHHHHHHh-ccc--------------cchHHHHHHHHHHHHh--------cceehhhhHHHHHhhHHHHHHHHHHH
Confidence 322222222210 101 1123444454555553 5788887532 1211 22333
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 035612 390 GAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITE-FTSNNATTTLVLPLLIQIAKTMHVHPLLLMVP 468 (534)
Q Consensus 390 ~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~-f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~ 468 (534)
..+-.++.++++||-.+.+.+.....-+.+.....+++.++..++|+ ..|.-++.-+..-+..|+|.++|.+|......
T Consensus 305 l~AaGfa~Vi~~TG~V~~LV~s~~~~~g~sK~l~a~lMlvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFSp~ati~l 384 (444)
T COG2056 305 LVAAGFAEVINATGAVEELVESSSSIIGQSKLLAALLMLVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFSPLATIAL 384 (444)
T ss_pred HHHhHHHHHHHhccCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccccchHHHHHHHHhHHHHhCCCHHHHHHH
Confidence 33444568999999999999998764444554444344455555553 37777888888888999999999999987777
Q ss_pred HHHHHhhh-cccCCCCchhhHhhcC---C-CCC-----HHHHHHHhHHHHHHHHHHH
Q 035612 469 GAIGAQFS-FLLPTGTPSNIVGFTT---G-HIE-----IQDMIKTGLPLKIAGIAAM 515 (534)
Q Consensus 469 ~~~~~~~~-~~~P~~~~~n~i~~~~---g-~~~-----~~~~~k~g~~~~ii~~ii~ 515 (534)
+..++..| --.|.|..+--=-.|- | |-- ...|+.+-+|+.+.+.+..
T Consensus 385 iG~AaALGDAGSPASDSTLGPTsGLNaDGQHdHIwDTcVPTFihYNiPLlifG~IaA 441 (444)
T COG2056 385 IGTAAALGDAGSPASDSTLGPTSGLNADGQHDHIWDTCVPTFIHYNIPLLIFGWIAA 441 (444)
T ss_pred HHHHHHhcCCCCCcccCCCCCccCCCCCCCccchhhccccceeecCchHHHHHHHHH
Confidence 77776666 4556554332212221 1 111 2334555666666655543
No 68
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=99.41 E-value=2.1e-10 Score=113.14 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=183.8
Q ss_pred hhhHHHHHHHHHHH-hccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 035612 89 MPITSMAPLFLFPL-FGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGT 167 (534)
Q Consensus 89 ~~~~al~~~~l~~l-~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~ 167 (534)
++..+-++...+.+ +|.-|.+ -..|++..++....-++++|.+|-.|.+.+..-|..++ +|+++.+.--++
T Consensus 20 lG~~gg~G~~il~~~fgl~Pg~-----~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk---~Pk~It~lAP~v 91 (364)
T PF03605_consen 20 LGLAGGLGVAILVFGFGLKPGS-----PPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRK---NPKYITFLAPLV 91 (364)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC-----CCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh---CCCcEEEehhHH
Confidence 34444444444433 6654422 45689999999999999999999999665554444444 577777777778
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCC
Q 035612 168 TAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPE 247 (534)
Q Consensus 168 ~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~ 247 (534)
+.+++.+...--++.-++|++..++++.|..|++ ++..+ ..++.++-.++|++..+-.+ .+.++.
T Consensus 92 t~~~T~~~GTgh~a~s~lPVI~eVA~~~~IRPeR---------Pls~s-vvASq~aItaSPiSAA~~~~-~~~l~~---- 156 (364)
T PF03605_consen 92 TYLFTFLAGTGHVAYSLLPVIAEVAKENGIRPER---------PLSIS-VVASQIAITASPISAATVAM-IAILAP---- 156 (364)
T ss_pred HHHHHHHhcccHHHHHhhHHHHHHHHHcCCCCCC---------chHHH-HHHHhcchhcCcHHHHHHHH-HHHHcc----
Confidence 8888888765556788999999999999999862 33332 34566666666664433222 333332
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHH---HHHHHHh---hcCCCchhHHHHHHHHHHH
Q 035612 248 ANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKA---NLKRELD---MLGPMAFAEKMVLAVFGML 321 (534)
Q Consensus 248 ~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~lg~~~~~e~~~l~~~~~~ 321 (534)
..++++.|.+...+|-+++..++..++..++- ++-++.+++++|- ..+++.+ ...+.+++.|+...+|...
T Consensus 157 ~~gv~~~~iL~V~iPat~ig~~~~a~~~~~~G---keL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~g 233 (364)
T PF03605_consen 157 AHGVSLLQILAVTIPATLIGVLVAAFVSSRRG---KELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLG 233 (364)
T ss_pred ccCCCHHHHHHhhHHHHHHHHHHHHHHHHhcC---CccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHH
Confidence 26899999999999999998888776654322 2211112221111 1111100 1135566778777777665
Q ss_pred HHHHhhccc-CCCCCCcccccccccCchHH--HHH-HHHHHHhccCccccccCcccccccccCCCchHHHHHHHHHHHHH
Q 035612 322 IALWMTRSI-TDDIPGWGALFNDRAGDGTA--SVS-CDGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIILLLGAGFAIAD 397 (534)
Q Consensus 322 i~l~~~~~~-~~~~~~~~~~~~~~~~~~~v--a~l-~~~ll~~l~~~~~~~~~~~l~~~~~~~v~w~~i~l~~~~~~l~~ 397 (534)
++..+.... .+..|+|.. ...-.+..+ .++ .+.+..++.+. +.+.+.+-..+ +-.-..++-+.|.--+++
T Consensus 234 v~~VV~~g~f~~lrp~~~~--~~l~m~~~Iq~~ML~~AalIll~cKv---~~~~I~~~sVF-kSGM~AvV~VfGVAWmgd 307 (364)
T PF03605_consen 234 VVAVVLYGSFPSLRPGFIK--KPLSMTDAIQMFMLAAAALILLFCKV---DPKKILSGSVF-KSGMVAVVCVFGVAWMGD 307 (364)
T ss_pred HHHHHHHHHcccccccccc--cCCCHHHHHHHHHHHHHHHHHeeecC---CHHHcccchhH-HHhHHHHHHHhhHHHHHh
Confidence 554433222 123355543 111011111 222 22223333220 00111111111 111222233333333333
Q ss_pred HHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh
Q 035612 398 GVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP 462 (534)
Q Consensus 398 ~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p 462 (534)
-+-+. -.+.+.+.+..+-+..||.+.+++++.+.+ .-|+.|++.+++|+.. ++|++|
T Consensus 308 Tf~~a-h~~~ik~~~~~~v~~~PWlfAv~LF~~S~L---l~SQAAT~~almPlgl----aLGI~P 364 (364)
T PF03605_consen 308 TFFNA-HIDEIKDAAGSLVQQYPWLFAVALFFVSAL---LYSQAATTKALMPLGL----ALGIPP 364 (364)
T ss_pred hHHHH-hHHHHHHHHHHHHHHCcHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH----HcCCCC
Confidence 33333 334555555543334455555555555554 4789999999999865 567776
No 69
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=99.36 E-value=2.6e-11 Score=126.27 Aligned_cols=181 Identities=11% Similarity=0.085 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc----c---cCCC-c
Q 035612 312 KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK----C---KKLP-W 383 (534)
Q Consensus 312 ~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~----~---~~v~-w 383 (534)
...+.+|+++..+.++++... .+-+.++++++.++.+.. ..+.++ . +..+ |
T Consensus 4 ~~~~~if~~~y~~i~~e~~~~------------~~r~~~al~ga~~~~~~~---------~~~~~~~~~~~~~~~~~d~~ 62 (420)
T TIGR00775 4 FQLCLLFLFGYLTIVFEHIVR------------VNKSAIWLAMGGLMWLVC---------FSHIPDVDHAALEEEIADMA 62 (420)
T ss_pred HHHHHHHHHHHHHHHhcchhh------------hccHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHhHH
Confidence 345677777777778764321 133557777766655542 223222 2 4568 9
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChH
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPL 463 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~ 463 (534)
++++++.|++.+.+.++++|..|+++..+.+.+. ..++..+++++.++|.|.+|++++.++.|+...+++ .+|.
T Consensus 63 ~ti~~LfgmMiiv~~l~~~g~f~~la~~l~~~s~---r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~---~~~~ 136 (420)
T TIGR00775 63 QVIFFLFVAMAIVELIDAHKGFSALVAWCVGKSR---KKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVK---ARED 136 (420)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---cCCc
Confidence 9999999999999999999999999998655433 344557889999999999999999999999999985 5666
Q ss_pred HHHHH--HHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 035612 464 LLMVP--GAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLM 519 (534)
Q Consensus 464 ~~~l~--~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~ 519 (534)
.+.++ .++++|.| ..||+|+|||.+..+.+++++.|++..-.+..++++++....+
T Consensus 137 ~~ll~~~i~~AANiGG~~TpIGdP~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il 195 (420)
T TIGR00775 137 RLLLGAICVIAVNAGGAWTPLGDVTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCG 195 (420)
T ss_pred cchHHhHHHHhcccccceeeCCCcchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 78999996 9999999999999998899999777776666666655444343
No 70
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.2e-12 Score=131.02 Aligned_cols=175 Identities=17% Similarity=0.206 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhh-cCC----hhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 035612 72 LGVLAWVFAWWLTE-AVP----MPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 146 (534)
Q Consensus 72 l~i~~~~i~~w~~~-~ip----~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i 146 (534)
....+.++++|+.+ ++| .+..+..+.. ...|..++++.-..|.|+++++..|++.+|.+.++||+.+.|++.+
T Consensus 385 t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~--~~~~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L 462 (586)
T KOG1281|consen 385 TSVVIITILLFCLPSQIPGFGKSGFIAIIPIV--VFFGLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNAL 462 (586)
T ss_pred hHHHHHHHHhheecccCccccccCcccccccc--cccCccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhh
Confidence 33445556666654 455 2233333332 2457778888777899999999999999999999999999999998
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 147 TILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 147 ~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
.. +.+ .....+.+.+.++..+++.|.||++++.++.||+..++++++.+| .+++++.+.+++.+ ++
T Consensus 463 ~~-l~~--~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~~l~~hp----------lyl~lp~tl~~SfA-f~ 528 (586)
T KOG1281|consen 463 KP-LES--LPVFAILLIFSLLILVVTEFVSNTATASIFIPILAELAEALGIHP----------LYLMLPTTLACSFA-FM 528 (586)
T ss_pred hh-ccc--CChHHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHHhcCCCC----------ceeehhHHHHHHHH-Hh
Confidence 87 554 256678888899999999999999999999999999999999998 45888888888855 88
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVA 270 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~ 270 (534)
.|+++|+|.++.+ ..++.-.||.+.|..+.+.+.+.
T Consensus 529 LPvstpPNaivfs--------~~~~k~~dm~~~G~~l~i~~~a~ 564 (586)
T KOG1281|consen 529 LPVSTPPNAIVFS--------MGDIKGKDMLKVGLFLNIGGPAI 564 (586)
T ss_pred cCCCCCCCeEEEe--------ecccchhhHhhhccchhHHHHHH
Confidence 8999999999884 45666677777766665544333
No 71
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=99.32 E-value=5.4e-09 Score=108.22 Aligned_cols=372 Identities=17% Similarity=0.173 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcch
Q 035612 123 VLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQS 202 (534)
Q Consensus 123 i~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~ 202 (534)
++-.++=...-||||+.+.+.++.+++. |++++........++|...|+ |...++.|+.-.+.+..|.+|
T Consensus 84 Vlv~mlgvgvAE~sGll~a~~r~~~~~~------p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhP--- 153 (502)
T PF03806_consen 84 VLVMMLGVGVAEKSGLLSALMRKLVLKA------PPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHP--- 153 (502)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhccC------CcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCCh---
Confidence 3333333467799999999998887653 344444444555666555544 345789999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHhhhccc-cccccchhHHHHHHHHhhhC---CCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHH
Q 035612 203 TLVRKYCKAVVLGVIYSAAVGGM-STLTGTGVNLILVGMWKTYF---PEANPISFS-TWFCFGFPLALVIFVALWAILCL 277 (534)
Q Consensus 203 ~~~~~~~~~l~l~i~~aa~igg~-~t~~g~~~n~i~~~~~~~~~---~~~~~is~~-~~~~~~~p~~li~~~~~~~~~~~ 277 (534)
...+..+|++..||+ +.+.-+++-.+..|+-++.. ..+..++-. +|+ +...-+++..++.+++.-+
T Consensus 154 --------laGi~~afa~vs~GfsAnl~i~~~D~ll~giT~~Aa~~idp~~~v~p~~N~y-F~~aSt~~l~~v~~~vt~k 224 (502)
T PF03806_consen 154 --------LAGIAAAFAGVSGGFSANLLIGSTDALLAGITTSAAQIIDPSYTVNPLMNYY-FMIASTFVLTIVGTWVTEK 224 (502)
T ss_pred --------HHHHHHHHHHHhccccceeeccchhHHHHHhHHHHHHhcCCCceechHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 256677777766655 34444455566666655531 112233332 333 2333333333344443433
Q ss_pred HhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHH-------HHHHHHHHHHhhcccCCCC--CCcccccccccCch
Q 035612 278 FYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVL-------AVFGMLIALWMTRSITDDI--PGWGALFNDRAGDG 348 (534)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l-------~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~ 348 (534)
..-||-.+.+.+ .+++..++ +..++|++||+.+ .+++..+++...++. +.. |.-+...++-...+
T Consensus 225 ivePrl~~~~~~--~~~~~~~~---~~~~Lt~~EkkgLr~Agi~~l~~lall~ll~iP~~-a~LR~~~tG~l~~SPf~~g 298 (502)
T PF03806_consen 225 IVEPRLGKYDGD--ADDDEIEE---ASSSLTPREKKGLRWAGIALLAFLALLLLLLIPEN-APLRSPETGSLFPSPFMKG 298 (502)
T ss_pred hhcccccccccc--cccccccc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccccCCCCCcccCChHHHh
Confidence 333332111100 01111111 1123677777543 222222333333321 111 11111111100112
Q ss_pred HHHHHHHHHHHhccCcccccc-Ccccccccc--------cC-CCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-h--
Q 035612 349 TASVSCDGNIVVHNSEHEAKG-EKLMDWNKC--------KK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-L-- 415 (534)
Q Consensus 349 ~va~l~~~ll~~l~~~~~~~~-~~~l~~~~~--------~~-v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l-- 415 (534)
.+.++. +.+++++...-.. ..+-+++|+ ++ -++-++.++++-| -..++.|++...++-.-.. +
T Consensus 299 IIpiI~--l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQF--ia~F~~Snlg~i~Av~GA~~L~~ 374 (502)
T PF03806_consen 299 IIPIIF--LFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQF--IAYFNWSNLGTILAVKGAEFLKS 374 (502)
T ss_pred HHHHHH--HHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHhhcchHHHHHHHHHHHHHh
Confidence 222221 1222332111111 123445553 12 2333444444444 3778999999998765442 2
Q ss_pred ccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhc--
Q 035612 416 EAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT-- 491 (534)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~-- 491 (534)
.+.+...+++.+.+++.+++.| .|.++-=+++.|++.|+-..+|+||...-.+.=++.|.. .+||. .|.-.++.+
T Consensus 375 ~~~~~~~l~i~fill~a~iNLfi~S~SaKWailAPifVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl-~~yf~lil~~~ 453 (502)
T PF03806_consen 375 LGLPGIPLIIGFILLTAFINLFIGSASAKWAILAPIFVPMFMLLGYSPALTQAAYRIGDSSTNIITPL-MPYFPLILGFA 453 (502)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhhhcchhhHHHHHhHHHHHHHHcCCCHHHHHHHHHhccccccccCcc-HHHHHHHHHHH
Confidence 2345455566778888888877 889999999999999999999999988777777888887 66776 344444433
Q ss_pred --C-CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035612 492 --T-GHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGA 524 (534)
Q Consensus 492 --~-g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~ 524 (534)
+ .+......+...+|+++...+...+....|..
T Consensus 454 qkY~k~~giGTlis~mlPysi~~lv~w~~ll~~W~~ 489 (502)
T PF03806_consen 454 QKYDKKAGIGTLISLMLPYSIAFLVVWTLLLIVWYL 489 (502)
T ss_pred HHhCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 36789999999999999988888888877763
No 72
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.29 E-value=3.1e-09 Score=101.81 Aligned_cols=417 Identities=15% Similarity=0.180 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 035612 66 ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALN 145 (534)
Q Consensus 66 ~~~~~~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~ 145 (534)
..+|...+=|+++..+ ..++.|+-...++++-.. ..|..+++++.+....+.-.++.-.|+++...---.+.-.+-.+
T Consensus 43 ~agWlLV~EFIfTLAM-ALKCYPLqPGGLLaieAv-~iGmt~p~~v~~Ei~aN~eVlLLL~FMVAGIyFMKqLLLfiFtk 120 (516)
T COG3067 43 VAGWLLVAEFIFTLAM-ALKCYPLQPGGLLAIEAV-AIGMTSPEHVKEEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTR 120 (516)
T ss_pred HHHHHHHHHHHHHHHH-HhhccCCCCCchHHHHHH-HHcCCCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677766666666554 667788776666655443 56888999998888777666666677777666555555555555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC-----------CCcc-----------hh
Q 035612 146 ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE-----------VPLQ-----------ST 203 (534)
Q Consensus 146 i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~-----------~~~~-----------~~ 203 (534)
++...+ +...+.+.+++..+++|+|.+...+++..+.+......-+.. |+.+ -+
T Consensus 121 lLl~iR----SK~~LSlaFc~~aAfLSAFLDALTVvAVvISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE 196 (516)
T COG3067 121 LLLSIR----SKMLLSLAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLE 196 (516)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhheeeeeeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHH
Confidence 544443 234566889999999999998888777777766654432211 0000 12
Q ss_pred hhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH--HHHHhcC
Q 035612 204 LVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAI--LCLFYCS 281 (534)
Q Consensus 204 ~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~--~~~~~~~ 281 (534)
+.|.+-+.+++-...+..+||.+|++|.|+|+++.. ..+..|+|++..+.|..+-.++...+. +.-.+|.
T Consensus 197 ~fRaFLRSLmMHagVGTALGGVmTmVGEPQNLiIa~--------~AgW~F~eFflrm~PVt~PV~i~GlltC~LvEKfr~ 268 (516)
T COG3067 197 QFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAK--------QAGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRW 268 (516)
T ss_pred HHHHHHHHHHHhhccchhhcceeeeccCchhhhhhh--------hccccHHHHHHHhcCchhHHHHHHHHHHHHHHHHhh
Confidence 235566778999999999999999999999999883 568999999998877665433322221 1223433
Q ss_pred CCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhc
Q 035612 282 RGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVH 361 (534)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l 361 (534)
-....+++++..+-..+-+.++..++++++|.-+.+-.+ +..|..-... +|- ...+.+.+..-++.-.+
T Consensus 269 FGYGa~LP~~Vr~vL~~~d~~~~~krt~Qdk~kL~vQa~-i~vwLvvgLA---------lHl-A~VGliGLsvIilaTsf 337 (516)
T COG3067 269 FGYGATLPEKVRQVLQQFDDQSRHKRTRQDKIKLIVQAI-IGVWLVVGLA---------LHL-AEVGLIGLSVIILATSF 337 (516)
T ss_pred ccccccccHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHH---------HHH-HHHhhhhhHHHHHHHhh
Confidence 333444444321111111222233566777765554332 2334432210 000 00111222111111122
Q ss_pred cCccccccCcccccccc-----cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 035612 362 NSEHEAKGEKLMDWNKC-----KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITE 436 (534)
Q Consensus 362 ~~~~~~~~~~~l~~~~~-----~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~ 436 (534)
. ++.+.... +..|...+ +.--|+...++-+..+..-+-+.+...+..... ..+++...+++.
T Consensus 338 t--------Gvt~EH~iGkAFqEsLPFTAL--L~VFFsvVAVIidQ~LF~PiIqfVL~a~~~~Ql---~lfyifNGLLS~ 404 (516)
T COG3067 338 T--------GVTDEHAIGKAFQESLPFTAL--LTVFFSVVAVIIDQHLFSPIIQFVLQASEHAQL---SLFYIFNGLLSS 404 (516)
T ss_pred c--------CCcchhhhHHHHHhcCcHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHcCCcccch---hHHHHHhhHHHh
Confidence 2 34443332 34565544 334456666666666666666665544333222 256678888888
Q ss_pred hchHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHhhhcccCCCCchhh-----HhhcC-----CCCCHHHHHHHhH
Q 035612 437 FTSNNATTTLVLPLLIQIAKTMH-VHPLLLMVPGAIGAQFSFLLPTGTPSNI-----VGFTT-----GHIEIQDMIKTGL 505 (534)
Q Consensus 437 f~Sn~a~~~il~Pi~~~la~~~g-~~p~~~~l~~~~~~~~~~~~P~~~~~n~-----i~~~~-----g~~~~~~~~k~g~ 505 (534)
..+|+-+..+-.-=.-. |-.-| +++..+=+ ++.+.|.|.-+|.-..||- ....+ -+.+..+|.-..+
T Consensus 405 iSDNVFV~TvYInE~k~-Al~~G~is~~qfel-LaVAINTGTNLPSVATPNGQAAFLFLLTSalaPLiRLSYGRMV~MAl 482 (516)
T COG3067 405 ISDNVFVGTIYINEAKA-ALEAGAISLKQFEL-LAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMAL 482 (516)
T ss_pred hccceEEEEEEehhHHH-HHHcCCcCHHhhhH-hhehhhcCCCCCcccCCCchhhHHHHHHhhhhHHHhhhhcceeeeec
Confidence 88886444332222211 11123 34433321 2344455533444344442 21111 2678888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035612 506 PLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 506 ~~~ii~~ii~~~~~~~~ 522 (534)
|++++..++..+..-+|
T Consensus 483 PYTlvl~~iGll~vef~ 499 (516)
T COG3067 483 PYTLVLTLVGLLAVEFT 499 (516)
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 88887777766555544
No 73
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=99.27 E-value=1.5e-07 Score=98.78 Aligned_cols=355 Identities=10% Similarity=-0.037 Sum_probs=200.7
Q ss_pred CChHHHHh----hhcc--hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhH
Q 035612 106 SSADTVAH----SYMD--DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNV 178 (534)
Q Consensus 106 ~~~~~v~~----~~~~--~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~ 178 (534)
.+.+|..+ ++.+ +.++.++..=.+...+..+|..+-+.+.-.+.. +|+.+....++++.++|..+ |..
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~i-----~p~~~~~~~Fl~~~~~s~~~Gss~ 124 (454)
T TIGR00931 50 VGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSII-----SPEWFAVSTLLICMIVSSFTGTSW 124 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHhccHH
Confidence 55555443 3333 333333333445578999999998887655443 58888899999999999998 788
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
.+.+.+.|+..++...+|.++ ....-++.-++..|--.+|.++.+|+... ..+.+..|.++
T Consensus 125 gt~~~~g~~l~~i~~~~g~~~----------~~~agai~sGa~fGD~~sP~Sdtt~l~a~---------~~~~~~~~~v~ 185 (454)
T TIGR00931 125 GTVGTIGVAMMGIGTGLGIDL----------AIAAGAVVCGAYFGDKLSPLSDTTNFASG---------IVGVDLFDHIR 185 (454)
T ss_pred HHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHcCCCCCCCcHHHHHHH---------HcCCCHHHHHH
Confidence 888999999999999999987 23334445566667788899988887655 45678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 035612 259 FGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWMTRSITDDIPGWG 338 (534)
Q Consensus 259 ~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~ 338 (534)
..+|..+...++.......+-+.. +.++.+. .+.+.+.+..++.-+.+. ..+.-.++++++-+.+.. ..
T Consensus 186 ~~~~~~~~a~~i~~v~~~i~g~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~---l~LlP~ilvIiLal~~~~--vi---- 254 (454)
T TIGR00931 186 HLLYTTVPSFVITAILFLVIGRSY-ATSNTQP-DKVQAMLTALDSQFTLSV---LTLIPPLLVVILAMRKKP--TI---- 254 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccCcH-hHHHHHHHHHHccCCCCH---HHHHHHHHHHHHHHhCCC--hH----
Confidence 877777666555443322222211 1111110 112222333333323222 233333333333333211 00
Q ss_pred cccccccCchHHHHHHHHHHHhc-cCccccc-------c----Ccccccccc------cCCCchHHHHHHHHHHHHHHHH
Q 035612 339 ALFNDRAGDGTASVSCDGNIVVH-NSEHEAK-------G----EKLMDWNKC------KKLPWNIILLLGAGFAIADGVR 400 (534)
Q Consensus 339 ~~~~~~~~~~~va~l~~~ll~~l-~~~~~~~-------~----~~~l~~~~~------~~v~w~~i~l~~~~~~l~~~l~ 400 (534)
..-...++.+.++.++ .+....+ | .+.-..++. ++.- +++.++.....++..++
T Consensus 255 -------~aL~igi~~g~ii~~~~qg~s~~~~~~~~~~G~~~~t~~~~v~~ll~~GGi~sM~-~~i~lii~~~~lggil~ 326 (454)
T TIGR00931 255 -------PVLVVGALTGIITAAFVQGADVVRWITIAQNGFSMETGNEVLDGLLNRGGLQSMM-WSLSLVMIALTFGGVLQ 326 (454)
T ss_pred -------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCccccccchHHHHHHhcccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 0001122222222211 1100000 0 000001111 1112 35556677778889999
Q ss_pred HhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhh-hcc
Q 035612 401 TSGLADDLSKALDFLEAAPYLAIAPIVCLISAIIT-EFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQF-SFL 478 (534)
Q Consensus 401 ~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt-~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~-~~~ 478 (534)
++|..+.+.+.+.+.-.+..-. .+...+.+.+.+ .+.+|+....+.-|++-++.++.|++|..+...+--++.. +.+
T Consensus 327 ~~G~l~~l~~~l~~~i~s~~~~-~l~t~~~~~i~~~i~~~~~~sil~~G~~~k~~~d~~~i~r~~LA~~ld~s~t~~~~L 405 (454)
T TIGR00931 327 RIGVLDVILQSANKKIISTWTF-DCSTSTSSIGVNVVTCEQYLSILLPGKTFESFYTKLNLAKKNLSRTLEDAGTLVNPL 405 (454)
T ss_pred HcCcHHHHHHHHHHHcCCCcce-ehHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhH
Confidence 9999999999986432222211 112233333333 2378888899999999999999999998887776554444 477
Q ss_pred cCCCCchhhHhhcCCCCCHHHHHHHhH
Q 035612 479 LPTGTPSNIVGFTTGHIEIQDMIKTGL 505 (534)
Q Consensus 479 ~P~~~~~n~i~~~~g~~~~~~~~k~g~ 505 (534)
.|.++.. ....+.=+++.-+++.+.+
T Consensus 406 iPws~~g-~~~~~~lgv~~~~~iPy~f 431 (454)
T TIGR00931 406 IPWGVSG-AYMAGTLGVDTISYLPFAF 431 (454)
T ss_pred HHHHHHH-HHHHHHcCCCHHHHHHHHH
Confidence 7884433 3334443556666665543
No 74
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=99.27 E-value=3.1e-10 Score=98.75 Aligned_cols=126 Identities=18% Similarity=0.185 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHH-HhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 71 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFP-LFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 71 ~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~-l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
.+..++.+++.-..++++.+..++....+.. +..-++.||+.++|+++..+.++|...+....+++|..|+++++.+++
T Consensus 7 sl~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~ 86 (149)
T PF07158_consen 7 SLLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRL 86 (149)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3444555555556789999999998887766 346689999999999999999999999999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCC
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVP 199 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~ 199 (534)
.|+ +++.+.+.++++++++|.+- .+.++.+++.|++.+++++.|.||
T Consensus 87 ~~~---r~~liP~v~f~~~~~lsa~G~g~~~~~Ai~aPia~~lA~~~gi~p 134 (149)
T PF07158_consen 87 VGG---RPALIPWVMFLLAAVLSAIGAGSIAAVAIMAPIAMSLARRTGINP 134 (149)
T ss_pred cCC---CceehHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCCH
Confidence 987 67788899999999999997 567788999999999999999998
No 75
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=99.26 E-value=3.8e-08 Score=100.46 Aligned_cols=362 Identities=17% Similarity=0.187 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhh----cchHHHHHHHHHHHHHHHHHh-cHHHHHHHHHH
Q 035612 73 GVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY----MDDVIALVLGSFILALAVEHY-NIHKRLALNIT 147 (534)
Q Consensus 73 ~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~----~~~~i~li~g~~~l~~~l~~t-Gl~~ria~~i~ 147 (534)
.++..+++....++++.+.....+..++.+..-.+.+...... .++++-.++...++...++++ |..||+.+.+.
T Consensus 6 ~~f~iii~~~~~rki~i~~s~~~ga~~l~~~~~~~~~~~~~~~~~~~~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l~ 85 (385)
T PF04165_consen 6 IVFLIIIVLLLLRKINIGISILLGALILGLLFGLGLDAFLKALASSSSWDTIVLILLIYFIMGLMEKLSGQLDRMVESLK 85 (385)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444443456799988887777666555545555544332 446666666667777777777 99999999887
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhh-hhhhhhHHHHHHHHHhhhcccc
Q 035612 148 ILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTL-VRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 148 ~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~-~~~~~~~l~l~i~~aa~igg~~ 226 (534)
+.++ | . .....-+++...-+. ..+..-.|++.+.+++++.++++.-- .-.+++. --..
T Consensus 86 ~l~~------R-~--~~~~~PAlIGLLPmp-GGA~fSAPmV~~~~~~~~ls~e~kt~iNywFRHi-----------wE~~ 144 (385)
T PF04165_consen 86 GLFP------R-V--SLAFIPALIGLLPMP-GGALFSAPMVEEAAEKMGLSPEEKTFINYWFRHI-----------WEFF 144 (385)
T ss_pred HHHH------H-H--HHHHHHHHHhcccCC-CcceeehHHHHhhhhhccCCHHHHHHHHHHHHHH-----------HHHH
Confidence 7764 2 1 222334444433222 33566789999999999888743100 0112221 1111
Q ss_pred ccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCC
Q 035612 227 TLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGP 306 (534)
Q Consensus 227 t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 306 (534)
.|. -|+.+..+. -.+++..+.....+|..+++.+..|+.. .|+.+++.+ + .++ .++..+++.|
T Consensus 145 ~Pl--YpgiiLas~-------l~gi~~~~~v~~~~P~~~~~~~~G~~~~---~r~~~~~~~-~---~~~-~~~~l~s~~P 207 (385)
T PF04165_consen 145 WPL--YPGIILASA-------LSGISVGEFVLAMWPITLLAFLIGWLFF---LRPLKKSEK-K---PRS-LKDLLKSLWP 207 (385)
T ss_pred hhh--hhHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHH---hcccccccc-C---Ccc-hHHHHHHHhH
Confidence 122 233444432 2368999999999999999988887643 222221110 0 011 2222222222
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCcccccc---c-c-cCC
Q 035612 307 MAFAEKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWN---K-C-KKL 381 (534)
Q Consensus 307 ~~~~e~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~---~-~-~~v 381 (534)
+.+. +++-+.-+. +...+.+.+.+...+.. ..+++ + + +..
T Consensus 208 --------il~~---i~l~v~~~l----------------~~~~~~~~~~l~~~~~~--------~~~~~~~~~~l~~a~ 252 (385)
T PF04165_consen 208 --------ILVI---ILLSVLFKL----------------PLALGLLIALLAILIYN--------RFRRKEIKEVLKEAL 252 (385)
T ss_pred --------HHHH---HHHHHHHcc----------------hHHHHHHHHHHHHHHHh--------ccCHHHHHHHHHHHh
Confidence 1111 111111111 12233333333333332 12333 3 2 468
Q ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCC
Q 035612 382 PWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVH 461 (534)
Q Consensus 382 ~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~ 461 (534)
+|.+++.+.+.+.+-+.+++||..|.+++.+.+.+ .|.......+-++..++|.. ..+.+.+.+|++.++...
T Consensus 253 ~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~~-ip~~li~~lipFivG~~TGi--~~a~vgi~fPll~~l~~~---- 325 (385)
T PF04165_consen 253 EPKILLLIIGIMIFKEILEATGVVEELPEFLSSLG-IPPFLIIALIPFIVGLITGI--TQAFVGIAFPLLAPLIGG---- 325 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhccc----
Confidence 99999999999999999999999999999887743 56555444444444444332 455667889998887643
Q ss_pred hHHHHHHHHHHHhh-h-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 462 PLLLMVPGAIGAQF-S-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 462 p~~~~l~~~~~~~~-~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
... ..+++++++ | .++|. +-.-.+..++-+.+..+.+|..++..++..++..+
T Consensus 326 -~~~-~~la~~~g~~GvmlSP~-HlCLvlT~eYFk~~~~~v~k~l~~p~~i~~~~~~~ 380 (385)
T PF04165_consen 326 -LPY-LVLAYASGFAGVMLSPV-HLCLVLTAEYFKADLGKVYKKLLPPALIFLAAGLL 380 (385)
T ss_pred -chH-HHHHHHHHHHHHhhchH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233455555 5 44444 44545555666889999999888777655554443
No 76
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=99.24 E-value=1.6e-10 Score=117.06 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=123.9
Q ss_pred cccccccc-cCCCchHHHHHHHHHHHHHHHHHhCHHHHHH-HHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 035612 371 KLMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLS-KALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVL 448 (534)
Q Consensus 371 ~~l~~~~~-~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia-~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~ 448 (534)
++.+.++. +++.-+.++++.++|.++.+..++|+.++++ +.+.+. + +...+.+.+++.+.++|.|.||++++++++
T Consensus 79 G~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~-Sk~~L~l~f~laaafLSaFLsnttvtAvmI 156 (515)
T TIGR00774 79 GMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-R-SKTLLSLAFCFAAAFLSAFLDALTVVAVVI 156 (515)
T ss_pred CCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46777774 7888889999999999999999999999999 666666 4 555566789999999999999999999999
Q ss_pred HHHHHH------------HHHcCCChH-------------------HHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCC
Q 035612 449 PLLIQI------------AKTMHVHPL-------------------LLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIE 496 (534)
Q Consensus 449 Pi~~~l------------a~~~g~~p~-------------------~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~ 496 (534)
|+..++ +++.+.++- .+++..+++++.| .+||+|+|+|++..+..+.+
T Consensus 157 pVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~g~~ 236 (515)
T TIGR00774 157 SVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQAGWL 236 (515)
T ss_pred HHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHhCCC
Confidence 999999 555544332 3788899999996 99999999999999876677
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 497 IQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 497 ~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
+.||+....|+.+..+++..+...+.
T Consensus 237 F~~FF~~m~Pv~LP~lIilll~~~l~ 262 (515)
T TIGR00774 237 FGEFFLRMSPVTLPVFICGLLTCALV 262 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777766666555444
No 77
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=99.22 E-value=5.2e-09 Score=102.12 Aligned_cols=363 Identities=13% Similarity=0.133 Sum_probs=207.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 035612 114 SYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGIL 192 (534)
Q Consensus 114 ~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~ 192 (534)
.=..+..+.++...-.+..|+++|..|.+.....|-...- .+|+.++..-.+++.+++.++ |.+....+++--..++.
T Consensus 70 ~r~agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~i-kspy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvl 148 (451)
T COG3069 70 NRGAGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYI-KSPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVL 148 (451)
T ss_pred cccccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhh-cccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 3344788888888889999999999998887665543321 167888888889999999998 77777777777777888
Q ss_pred HhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH-HHHHHHHHHHHHH
Q 035612 193 QNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC-FGFPLALVIFVAL 271 (534)
Q Consensus 193 ~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~-~~~p~~li~~~~~ 271 (534)
...|.++.. -+...++..+....|. ..|.+..+- -.+++..|++. +..|.++..++..
T Consensus 149 v~~Gvsr~a------------aaAi~Ast~~i~lsp~--s~~sv~aAe-------~sgm~i~~~~~~~~lpv~i~~iI~~ 207 (451)
T COG3069 149 VNLGVSRGA------------AAAICASTAAIILSPT--SGDSVLAAQ-------VSGMKIADFAFHYQLPVSIAAIIGM 207 (451)
T ss_pred HHhcccchh------------hHHHhhchHHheeCCC--CcchHHHHH-------hcCCceEeeeeccCcHHHHHHHHHH
Confidence 888876421 1111222223344443 345554432 23555555543 4566665544433
Q ss_pred HHHHHH--HhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHh-hcccCCCCCCcccccccccCch
Q 035612 272 WAILCL--FYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMVLAVFGMLIALWM-TRSITDDIPGWGALFNDRAGDG 348 (534)
Q Consensus 272 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~l~~~~~~i~l~~-~~~~~~~~~~~~~~~~~~~~~~ 348 (534)
...-++ +|+.+++. .+ .|..+ .+++....+. ...+.-+.=.++... +... + . .|. ..+..
T Consensus 208 ai~hff~qr~~Dkk~~--~~----~e~~e--q~~~~~~~p~-~YAilPl~PlI~~lig~~~~-~-l-~~i-----kl~i~ 270 (451)
T COG3069 208 AIAHFFWQRYLDKKEN--IE----HEMLE--QKEIDTVVPA-FYAILPLTPLIGVLIGFDGK-G-L-PQI-----KLHII 270 (451)
T ss_pred HHHHHHHHHHhhhhcc--cc----hhHHH--HhhhccCCch-hhhhhhhhhHHHHHHhhccc-c-c-hhh-----hhhhH
Confidence 222221 12222111 11 11111 1111111111 222222211111112 2111 0 0 111 01122
Q ss_pred HHHHHHHHHH-HhccCccccccCccccc-ccc-c---CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHH
Q 035612 349 TASVSCDGNI-VVHNSEHEAKGEKLMDW-NKC-K---KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLA 422 (534)
Q Consensus 349 ~va~l~~~ll-~~l~~~~~~~~~~~l~~-~~~-~---~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~ 422 (534)
.+++.+..+ .++-..++.+.+++.+- |++ + +-=-+++.++.++-.++.+++.+|..|.+-+..+..+.....
T Consensus 271 -t~mlI~l~i~m~vefirk~n~k~~~~~l~~ff~GMg~~fanVV~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g~~~- 348 (451)
T COG3069 271 -TIMLISLLIAMLVEFLRKFNLKEVMDDLEAFFDGMGDAFANVVMLIVAAGVFAQGLKTIGAIDALISGATSFGSGGIG- 348 (451)
T ss_pred -HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCCcHH-
Confidence 222222221 11111011222223222 222 2 222567788888888999999999999998888755433332
Q ss_pred HHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHH
Q 035612 423 IAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDM 500 (534)
Q Consensus 423 ~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~ 500 (534)
+.++..+.+.+..-. .|..+-...+.-..-++|..+|+||..+.++...+++.+ .+.|++ ..-..+.|..+++.-|.
T Consensus 349 vmli~~l~~~L~aIvtGSGnApf~AF~~lip~~Aa~lgi~~v~l~mpm~~As~igRt~SPis-gVvvavaG~a~vSPfe~ 427 (451)
T COG3069 349 LMLILVLLTFLAAIVTGSGNAPFIAFVELIPKLAAGLGINPVYLIMPMLQASALGRTLSPVS-GVVVAVAGMAKVSPFEV 427 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCchhhhHHhhcchhhhhcCCChHHHhhhHHHHHhhcccccccc-ceeeeeccccccChhhe
Confidence 223334444333322 566666777888888999999999999999999999998 889994 44455667789999999
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 035612 501 IKTGLPLKIAGIAAMAFL 518 (534)
Q Consensus 501 ~k~g~~~~ii~~ii~~~~ 518 (534)
.|...+..++.++...+.
T Consensus 428 vKRts~pm~~~lv~v~l~ 445 (451)
T COG3069 428 VKRTSVPMLVGLVTVILA 445 (451)
T ss_pred eeccCcchhhHHHHHhhe
Confidence 999888888777665543
No 78
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=99.14 E-value=3.8e-09 Score=102.92 Aligned_cols=324 Identities=16% Similarity=0.125 Sum_probs=168.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 035612 115 YMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQN 194 (534)
Q Consensus 115 ~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~ 194 (534)
-..|+++.++....-++++|.+|-.|.+.+..-|..++ +|+++...--.++.+++.+...--++.-.+|++..++++
T Consensus 46 ~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRk---nPK~iT~lAP~Vty~lT~maGTGh~vySilPVI~eVA~~ 122 (436)
T COG2704 46 PPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRK---NPKYITILAPFVTYTLTILAGTGHVVYSILPVIAEVAKK 122 (436)
T ss_pred CChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHh---CCCeEEEehhHHHHHHHHhhcCCceeeeehhHHHHHHHH
Confidence 45588999999999999999999998654433333344 566665555666777765553333456789999999999
Q ss_pred CCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035612 195 LPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAI 274 (534)
Q Consensus 195 ~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~ 274 (534)
.|..|++ ++.. ...++-++-.++|+ ...+..+.... +..++++.+-+...+|-.++...+..++
T Consensus 123 ~gIrPeR---------Pls~-avVsSQ~aItASPI----SAAVV~~~a~l--~~~g~~~l~ll~v~IPaTl~g~~~~~l~ 186 (436)
T COG2704 123 NGIRPER---------PLSA-AVVSSQIAITASPI----SAAVVYMSAVL--EPLGISYLTLLMVTIPSTLLGVLLMALF 186 (436)
T ss_pred cCCCCCC---------cchH-HHHHhhhhhhcCch----HHHHHHHHHHH--hhcCcchheeeeEEecHHHHHHHHHHHH
Confidence 9999863 2222 22344444444444 33333333322 2345568888888999999887777666
Q ss_pred HHHHhcCCCCCCcchhhhhHHHHHH-HHhh-------cCCCchhHHHHHHHHHHHHHHHhhcccC-CCCCCccccccccc
Q 035612 275 LCLFYCSRGSGPALSEYLDKANLKR-ELDM-------LGPMAFAEKMVLAVFGMLIALWMTRSIT-DDIPGWGALFNDRA 345 (534)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------lg~~~~~e~~~l~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~~ 345 (534)
..++.|.-+++ +++ ++++++ +.++ ..+.+++.|....+|+..++........ ...|+|...- .+
T Consensus 187 ~~~~gkeL~~D---p~y--q~RL~~~~~~~~~~~t~~~~~~~~~Ak~sv~iFL~a~~~vV~~a~~~s~r~~~~g~~--~l 259 (436)
T COG2704 187 VWFRGKELDDD---PEY--QKRLSEGLIRDGDTGTKLEKELPKSAKLSVWIFLGAVVVVVLYAAAPSLRPGFVGKP--LL 259 (436)
T ss_pred HHHhcccccCC---HHH--HHHhhCcccccCCcccccccccCccchhhHHHHHHHHHHHHHHHhccccccccCCCC--cc
Confidence 55444221111 221 111211 1111 1344555666677776655444332221 1123332110 01
Q ss_pred C-chHH--HHHH-HHHHHhccCccccccCcccccccccCCCchHHH--------HHHHHHHHHHHHHHhCHHHHHHHHhh
Q 035612 346 G-DGTA--SVSC-DGNIVVHNSEHEAKGEKLMDWNKCKKLPWNIIL--------LLGAGFAIADGVRTSGLADDLSKALD 413 (534)
Q Consensus 346 ~-~~~v--a~l~-~~ll~~l~~~~~~~~~~~l~~~~~~~v~w~~i~--------l~~~~~~l~~~l~~sG~~~~ia~~l~ 413 (534)
+ +..+ .++. +.+..++ +..|.+++.-+.+| -+.|.--+++-+- ++..+++.+...
T Consensus 260 ~m~~~Iq~~ML~~a~li~l~------------~K~d~~~I~~~svFksGM~A~v~ifGiAWl~dTf~-~~h~~~iK~~~~ 326 (436)
T COG2704 260 SMTLAIQIFMLSAAALIVLL------------CKTDPASILNGSVFKSGMIACVAIFGIAWLGDTFV-SAHIDEIKAVAG 326 (436)
T ss_pred cHHHHHHHHHHHHhHheeEE------------ecCChhhccCcchhhhhhHHHHHHHhHHHHHHHHH-HhhHHHHHHHHH
Confidence 1 1111 1111 1111112 12222233222222 2222222222222 223455555555
Q ss_pred hhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhh
Q 035612 414 FLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNI 487 (534)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~ 487 (534)
.+-...+|...+.+++.+.+ .-|+.+++..++|+ +.++|++|..+ .+ .+.+..+ |.+|. +|+-.
T Consensus 327 ~lv~~~PW~~AvalF~vS~l---v~SQaAT~~al~P~----~lalGv~~~~l-va-~~~Av~gyf~iPt-Yp~~l 391 (436)
T COG2704 327 ELVQTYPWLLAVALFFVSAL---VNSQAATAKALVPV----ALALGVPPLIL-VA-SFAAVSGYFFLPT-YPTLL 391 (436)
T ss_pred HHHHcCcHHHHHHHHHHHHH---HhhHHHHHHHHHHH----HHHcCCCHHHH-HH-HHHHhceeEEccC-Cccce
Confidence 44344556555555555554 46788999999985 45688988443 33 3444455 77775 55543
No 79
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.09 E-value=1.8e-08 Score=105.87 Aligned_cols=177 Identities=10% Similarity=0.103 Sum_probs=124.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhh---cch---HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 035612 76 AWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSY---MDD---VIALVLGSFILALAVEHYNIHKRLALNITIL 149 (534)
Q Consensus 76 ~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~---~~~---~i~li~g~~~l~~~l~~tGl~~ria~~i~~~ 149 (534)
+.++++.....++..+.++++..+..+++..+.++..+.. +++ ...+++++-+...+++++|..|.+++.+.+.
T Consensus 239 l~viv~~~~~~~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf~~~l~~~G~i~~la~~l~~~ 318 (431)
T TIGR00784 239 ISLMVFLVLGTKHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVFTGILSGTKMVDAMAGSLVSI 318 (431)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333334444556666666666665566654443333322 222 2244444444499999999999999999988
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccc
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLT 229 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~ 229 (534)
.+++ ........+...+.++|.++||++....+.|++..++++.|.++ ..+..+...+.+. ...+|.
T Consensus 319 ~~~~--~~~~~~~i~~~~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G~~~----------~~l~~a~~i~~~~-~~~SPv 385 (431)
T TIGR00784 319 IPSS--MGGFFPVIVALTSIPFTFVMSNDAYYFGVLPIFAEAASAYGIDP----------VEIARASIMGQPV-HLLSPL 385 (431)
T ss_pred cCcc--hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHhcccc-hhcCCc
Confidence 7653 12246677888899999999999999999999999999999887 3455555555554 457888
Q ss_pred cchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035612 230 GTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAI 274 (534)
Q Consensus 230 g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~ 274 (534)
+|+|.++.+ ..+++..|+.+++++..+...++....
T Consensus 386 -s~~~~l~~~--------~~~~~~~d~~k~~~~~~~~~~~v~~~~ 421 (431)
T TIGR00784 386 -VPSTVLLVG--------MLGVSLGDHQKFAVKWAVITSIVMTLL 421 (431)
T ss_pred -hHHHHHHHH--------ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 789998885 457899999999999888776665443
No 80
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=99.03 E-value=9e-07 Score=89.28 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=202.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhh
Q 035612 130 ALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYC 209 (534)
Q Consensus 130 ~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~ 209 (534)
...-||||+.+.+-++.+++. |++++.-..+...++|...|+ +...++.|++.-+..+.|..|-
T Consensus 102 igvAE~SGll~alm~~~~~~~------pk~llt~~vvfigi~s~~asD-aayVVlpPlaAmiF~a~GRHPl--------- 165 (516)
T COG2978 102 IGVAERSGLLSALMRKLLNKV------PKRLLTFTVVFIGILSHIASD-AAYVVLPPLAAMIFIALGRHPL--------- 165 (516)
T ss_pred hhhhhhcccHHHHHHHHHhhc------chHHHhhHHHHHHHHHHHHhh-cceeEecchHHHHHHHhCCCcH---------
Confidence 466799999999988887653 455655555555666544443 3457788999999999998882
Q ss_pred hHHHHHHHHHhhhccc-cccccchhHHHHHHHHhhhC---CCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 035612 210 KAVVLGVIYSAAVGGM-STLTGTGVNLILVGMWKTYF---PEANPISF-STWFCFGFPLALVIFVALWAILCLFYCSRGS 284 (534)
Q Consensus 210 ~~l~l~i~~aa~igg~-~t~~g~~~n~i~~~~~~~~~---~~~~~is~-~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~ 284 (534)
-.++.++++..||+ +-++-+..-.+..|+-++.. .....+|. .+|... .--+++...+.|++--+..-||-.
T Consensus 166 --AGlaaafAgvsgGfsanl~~~~~D~Ll~GfTq~AA~iidp~~~vnp~~NwyF~-~as~~vl~~i~~fvTdKivEPRLg 242 (516)
T COG2978 166 --AGLAAAFAGVSGGFSANLLPGTIDPLLAGFTQPAAQIIDPSYQVNPLMNWYFI-AASVFVLTLIGWFVTDKIIEPRLG 242 (516)
T ss_pred --HHHHHHHhhcccccccccccCcchHHHHHhhHHHHHhcCCccccCcchhHHHH-HHHHHHHHHHHHHHhccccccCCC
Confidence 44666666665655 33334445567777766541 11112332 233322 222333334444433333323211
Q ss_pred CCcchhhhhHHHHHHHHhhcCCCchhHHHH----HHHHHHH--HHHHhhcccCCCCCCccccccccc-C----chHHHHH
Q 035612 285 GPALSEYLDKANLKRELDMLGPMAFAEKMV----LAVFGML--IALWMTRSITDDIPGWGALFNDRA-G----DGTASVS 353 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~----l~~~~~~--i~l~~~~~~~~~~~~~~~~~~~~~-~----~~~va~l 353 (534)
.. ++ ..++ .+++.++.+..+.+||+. ...++++ ++.|..-+..+.. .+.-.+.. + .+.+..
T Consensus 243 ~~--~~-~~~~-~~~~~~~~~~~t~~Ekkgl~~Agi~~l~~~al~~~~~iP~~~~L---r~~~~~~~~~sPf~~siV~~- 314 (516)
T COG2978 243 PY--QG-LSSE-AEDDENASQELTALEKKGLKWAGISFLATIALLAALVIPENSPL---RDPDGGLVPDSPFMKSIVPF- 314 (516)
T ss_pred CC--CC-cchh-hhhhhhhhhhcCHHHhcccchhhHHHHHHHHHHHHHHcCCCCcc---cCCCCCcCCCChHHHhHHHH-
Confidence 00 00 0111 112223344556666542 2222222 2233332221211 11000000 1 122222
Q ss_pred HHHHHHhccCccccccCc-ccccccc--------cC-CCchHHHHHHHHHHHHHHHHHhCHHHHHHHH----hhhhcccc
Q 035612 354 CDGNIVVHNSEHEAKGEK-LMDWNKC--------KK-LPWNIILLLGAGFAIADGVRTSGLADDLSKA----LDFLEAAP 419 (534)
Q Consensus 354 ~~~ll~~l~~~~~~~~~~-~l~~~~~--------~~-v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~----l~~l~~~~ 419 (534)
-.++|++|+.......+ +-+-||+ ++ ...-++.++++-|. ..++.|++..+++-. +... +.+
T Consensus 315 -i~~~FlipGlvYG~vtgtik~~kDvv~~M~~~m~sMg~yiV~~FfaaQFv--a~FnwSn~G~~~AV~GA~~L~~~-gl~ 390 (516)
T COG2978 315 -IFLLFLIPGLVYGRVTGTIKNDKDVVNMMAESMSSMGGYIVIAFFAAQFV--AFFNWSNLGTIMAVKGADFLKAI-GLT 390 (516)
T ss_pred -HHHHHHHhhhhhheeeeeeeccHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHhcccccchhheechHhHHHHc-CCC
Confidence 22345556532211111 2233443 12 23334445555443 567888888888643 3322 233
Q ss_pred HHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCc-hhhHhhc--C-C
Q 035612 420 YLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTP-SNIVGFT--T-G 493 (534)
Q Consensus 420 ~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~-~n~i~~~--~-g 493 (534)
.....+.+.+++.+++.+ .|.+|-=+++.||+.++-..+|.+|...=.+.=++.|.. .+||..+- |-.+.+. + .
T Consensus 391 g~~lil~~illsa~inL~IgSASAkWailaPIfVPMlMllGysPe~tQaayRigDS~tniiTPlm~yfpLil~~~~kY~k 470 (516)
T COG2978 391 GLPLILGFILLSAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFTQAAYRIGDSVTNIITPLMPYFPLILAYAQKYDK 470 (516)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHhcccccccccchhhhHHHHHHHHHHhCc
Confidence 333344666777888766 888988899999999999999999987777777888887 67776432 2223332 2 3
Q ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035612 494 HIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGT 529 (534)
Q Consensus 494 ~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~~~~~~ 529 (534)
+.....+....+|+++...++..+....|. .+|+
T Consensus 471 ~~GvGTL~s~mLPYsi~f~i~w~~l~~iw~--~lgl 504 (516)
T COG2978 471 DAGVGTLMSMMLPYSIAFLIAWTLLLLIWF--LLGL 504 (516)
T ss_pred CccHHHHHHHhhhHHHHHHHHHHHHHHHHH--HhCC
Confidence 677899999999999999999888888883 5554
No 81
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=98.93 E-value=2.1e-07 Score=97.39 Aligned_cols=147 Identities=19% Similarity=0.268 Sum_probs=112.0
Q ss_pred ccCChHHHHhhhc------chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhh
Q 035612 104 GISSADTVAHSYM------DDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHN 177 (534)
Q Consensus 104 gi~~~~~v~~~~~------~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn 177 (534)
+..+.+|..+.+. ..+.+++.++..++..++++|+.+.+++.+... +. ++....+.+.+...+++++++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~-~~---~~~~~~~li~~~~~ilg~~~~~ 316 (405)
T TIGR00786 241 RELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANA-IS---SPIVFLIMINILLLIVGMFMDL 316 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHHHHhcccH
Confidence 4567777766655 367777778899999999999999999998874 43 4566666677788888999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhcccccc-ccchhHHHHHHHHhhhCCCCCCcchHHH
Q 035612 178 VAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL-TGTGVNLILVGMWKTYFPEANPISFSTW 256 (534)
Q Consensus 178 ~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~-~g~~~n~i~~~~~~~~~~~~~~is~~~~ 256 (534)
++...++.|++.+++++.|.|| ....+.+.+++..+ ..|| +|.+.+ +..+ ..++++.||
T Consensus 317 ~a~~~i~~PI~~p~a~~~Gv~p----------~~~~~~~~~~~~~g-~ltPPvg~~~~-~~~~--------~~~~~~~~~ 376 (405)
T TIGR00786 317 TPAILILTPILLPVAVHLGIDP----------VHFGVMFVLNLEIG-LLTPPVGTNLF-VASG--------VAKMSITEV 376 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHHh-cCCCCchHHHH-HHHH--------hcCCCHHHH
Confidence 9999999999999999999988 34555666666664 5554 664333 2232 347899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035612 257 FCFGFPLALVIFVALWAI 274 (534)
Q Consensus 257 ~~~~~p~~li~~~~~~~~ 274 (534)
++.++|..++.++...++
T Consensus 377 ~k~~~p~~~~~~~~~~~~ 394 (405)
T TIGR00786 377 TRALWPFLLAQFLVLLLV 394 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988776665443
No 82
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=98.92 E-value=3.1e-08 Score=103.71 Aligned_cols=144 Identities=15% Similarity=0.254 Sum_probs=112.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKT 457 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~ 457 (534)
++++|++++++.+...+..++++||..|++.+...+. .+.+.... +++.+++.+++.+.++...+..+.|+..++|.+
T Consensus 44 ~~~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~-lli~i~~~lfs~~~~~~~~~i~~~PI~i~ia~~ 122 (433)
T PRK09412 44 GSIPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYIT-FLAPIVTYLFTFLAGTGHIAFSTLPVIAEVAKE 122 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhH-hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999866543 33343332 345566777777777766677899999999999
Q ss_pred cCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCC--CCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTG--HIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g--~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+|.||........++++.+ ..+|++.+++.+.-... ++++.|+.+.++|..++..++.....+.+.
T Consensus 123 lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~~lp~~iv~~~~~~~~~~~ya 191 (433)
T PRK09412 123 QGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMVVIPSTLLAVMVAAFVTNKMG 191 (433)
T ss_pred cCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976666667888886 78899766655543323 799999999999999998877666655554
No 83
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=98.90 E-value=8.2e-06 Score=86.69 Aligned_cols=353 Identities=14% Similarity=0.078 Sum_probs=194.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLP 196 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g 196 (534)
..++...+.-...+...++|..++..++.++... +..+...-++.+.++|..+ +...+....-|....+.+..|
T Consensus 84 ~alli~~~~g~~~~~w~~~g~v~~~~~~gL~~i~-----~~~~~~~~f~~t~ivs~~~gts~gt~~t~~~~l~~I~~~~g 158 (485)
T COG1757 84 TALLILLGIGAAIAAWAASGIVPALVYYGLKLIS-----PSIFFFDDFFITAIVSTATGTSWGTAATSGPALAGIGDSTG 158 (485)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcC
Confidence 4455555666666778888888888888888763 5667777777888888777 666778899999999999999
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 197 EVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
.|+ -...-++..++..|....|..+.+|.... ..+..+.|-.+..+...+...++......
T Consensus 159 ap~----------~l~agai~~GAyfgd~ispisdTt~~aa~---------~~~~~~~~~i~~~~y~~~~~~iv~~i~~~ 219 (485)
T COG1757 159 APL----------ALTAGAILSGAYFGDKISPLSDTTILAAG---------TQGVDLVDHIKSNFYTTIPAFILALIVYF 219 (485)
T ss_pred CCH----------HHHHHHHHHHHHHHhhhhHhHHHHHHHhc---------ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 23444566677778888888777776433 45667777777666655554444433222
Q ss_pred HHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhH--HHHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHH
Q 035612 277 LFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAE--KMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSC 354 (534)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e--~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~ 354 (534)
.+-.....+ ......+++..++..+ ...+ -..+...+..+.++.++.+. .+... -....+..++++.
T Consensus 220 ~lg~~~~~~-~~~~~~~~~~~~~~~~-----~~~~i~~i~llp~~~v~~~~~~g~~~--~~~l~---~~~~~~~~i~l~~ 288 (485)
T COG1757 220 FLGFGSMLK-AENRARTVEGLESILK-----VSFLINPILLLPYVTVLVLALTGVPA--FPVLL---AGINTAVIISLLY 288 (485)
T ss_pred Hhccccccc-hhhhhhhHhhcchHHh-----hhhhHHHHHHHHHHHHHHHHHhCCch--HHHHH---HHHHHHHHHHHHH
Confidence 111111110 0000000111111111 0111 12222223333444442220 00000 0000011111111
Q ss_pred HHHHHhccCccccccCcccccccc--------cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHH
Q 035612 355 DGNIVVHNSEHEAKGEKLMDWNKC--------KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPI 426 (534)
Q Consensus 355 ~~ll~~l~~~~~~~~~~~l~~~~~--------~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~ 426 (534)
.-..+..-.+...++. -.+-++. +.+-| ++.++.-+.++++.+++.|..+++.+.+.+........ ...
T Consensus 289 g~~~~~~~~~~~~~g~-~~~~~~~~~~l~~G~~sM~~-~i~ilila~siggi~~~~G~~~~l~~~~~~~i~s~~~l-~~~ 365 (485)
T COG1757 289 GGFSFLDAINALYLGF-TTSVEEVLKLLNRGIKSMLG-AILILILAWSIGGILEDLGTLEYLLSLLQKFIKSKGSL-PLI 365 (485)
T ss_pred cchHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCCCcchh-HHH
Confidence 1111100000000111 0111121 23333 45566667788999999999999999998543222111 113
Q ss_pred HHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCC-CCCHHHHHHH
Q 035612 427 VCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTG-HIEIQDMIKT 503 (534)
Q Consensus 427 ~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g-~~~~~~~~k~ 503 (534)
+.+.+.+.+.+ .+|..+..+..|+..++++..++++....-.+-.++.++ -+.|++...-......+ ..+..|++.+
T Consensus 366 ~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~~~~~~l~~~l~~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPy 445 (485)
T COG1757 366 IFLLAILVAFATGTSWGSIIIMGPIAKEIADKLGLHSKRLSRALEAGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPY 445 (485)
T ss_pred HHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhCccHHHHHHHHHhcCeecCCCCCcchhHHHHHhccCCCchhHhhHHH
Confidence 33333333333 788888999999999999999999977444443444444 78899766655555554 4777888777
Q ss_pred hHHHH
Q 035612 504 GLPLK 508 (534)
Q Consensus 504 g~~~~ 508 (534)
.+...
T Consensus 446 a~~~~ 450 (485)
T COG1757 446 AFYAA 450 (485)
T ss_pred HHHHH
Confidence 66655
No 84
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=98.87 E-value=1.4e-05 Score=85.07 Aligned_cols=134 Identities=25% Similarity=0.387 Sum_probs=97.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
+--|...+-+...++++..++++|....+++.+.. .+.-...+.-.+..+..++| .|||+...++.++=...|+++|
T Consensus 383 ~~~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~lG~lG~FiT--GS~T~SN~lF~~lQ~~~A~~lg 459 (522)
T PF02652_consen 383 KQLWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPFLGWLGSFIT--GSNTSSNALFGPLQVTTAQQLG 459 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHcC
Confidence 34477888899999999999999999999999987 44332222222333332211 6899999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcC--C-CCCHHHHHHHhHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTT--G-HIEIQDMIKTGLPLKIAGIAAMAFLM 519 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~--g-~~~~~~~~k~g~~~~ii~~ii~~~~~ 519 (534)
.||....-.-..+++.++|. +|.|...... | .=+-.|.+|..++++++..++..++.
T Consensus 460 l~~~l~~Aaq~~Gg~~g~mI---sp~~i~~a~a~~g~~g~Eg~ilr~t~~~~l~~~~i~g~~~ 519 (522)
T PF02652_consen 460 LPPLLIAAAQNVGGAMGNMI---SPQNIVAAAAAVGLSGKEGEILRKTLPPSLIYALIVGLLV 519 (522)
T ss_pred CCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987766777777778776 7777665432 2 12357788888888877666555444
No 85
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=98.80 E-value=2.3e-07 Score=96.07 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=114.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNA-TTTLVLPLLIQIAK 456 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a-~~~il~Pi~~~la~ 456 (534)
.+.||++++++.+.+..+.+++++|..|++.+.+.+. ..++.... + +..++..+..|.+|++ ++..++|+...+|+
T Consensus 44 ~~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~-l-lap~vt~l~afl~~Tg~~v~~~lPVi~~vA~ 121 (443)
T PRK12489 44 GKPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYIT-I-LAPFVTYTLTFLCGTGHVVYSILPIIYDVAL 121 (443)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHH-H-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988765 33444433 2 3344445558889998 58999999999999
Q ss_pred HcCCChHHHHHHHHHHHhhh-cccCCCCchhhH---hhcC----CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIV---GFTT----GHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i---~~~~----g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+.|++|.-...+.++++..+ ..+|++...|.+ ..+. ..+++.|+...|+|.++++.+...++.+.++
T Consensus 122 k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~~f~il~VgIP~~~ig~l~~~l~~~~~g 196 (443)
T PRK12489 122 KNGIRPERPMAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHITLLDILAVTIPATLIGVLAAALWSLRRG 196 (443)
T ss_pred HcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988777778888875 778888777766 3232 3589999999999999998888777665543
No 86
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=98.68 E-value=9.1e-07 Score=92.29 Aligned_cols=142 Identities=18% Similarity=0.274 Sum_probs=112.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKT 457 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~ 457 (534)
+++||++++++.+.......+++||..|+..+.+.+. .+++.... +.+.+++.+++.+.+|...+..+.|+..+++++
T Consensus 40 ~~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~-llipii~~lfs~~~g~~~~~l~f~PI~i~la~~ 118 (430)
T TIGR00770 40 GKIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYIT-ILAPSVTYFLTILAGTGHVVYSTLPVIAEVAKE 118 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhh-hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999877653 33343322 345667777777788888889999999999999
Q ss_pred cCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcC---CCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTT---GHIEIQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~---g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
+|.||........++++.| ..+|++. ++.+..+. .++++.|++....|..++..++.......+
T Consensus 119 lG~d~i~~~ai~~~aa~iG~~as~in~-~~~~~ig~~~~~Gi~f~~~l~~rip~~~v~l~v~~~~v~~y 186 (430)
T TIGR00770 119 QGIKPERPLSLAVVSSQIAITASPVSA-AVVFMSAILEPLGIEYLDLLMVTIPSTFLGCMLTAFFVNFF 186 (430)
T ss_pred hCCCChhHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987777778888886 6778865 44444442 268999999999999998877765544444
No 87
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=98.68 E-value=1.5e-05 Score=81.59 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=88.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHH-----HHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLAD-----DLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQ 453 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~-----~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~ 453 (534)
+--.+.++.++-.-.+...++++|+.+ .+++.+....+... ..+..++...+++.| .|..+..++..|++.+
T Consensus 306 ~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a~~~~--f~l~~~l~~~liNfFIPSGsGqwai~aPImvP 383 (438)
T TIGR00366 306 RSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVANKDT--FPLMTFFSAGLINIFIPSGGGHWAIQGPIVIP 383 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhCCccH--HHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 344555555555555667789998888 77776655432222 233455777788777 8999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHH
Q 035612 454 IAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPL 507 (534)
Q Consensus 454 la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~ 507 (534)
+++.+|+||....++..++.+.. .++|.=.-|- .+..+++.||.+.+.+..
T Consensus 384 ~a~~LGvs~~~tv~Ay~~GD~~tNlI~PfWaLP~---L~i~gL~arDImGy~~~~ 435 (438)
T TIGR00366 384 AAQALGVDLGKSVMAIAYGDAWTNMAQPFWALPA---LGIAGLGARDIMGYCITA 435 (438)
T ss_pred HHHHcCCCHHHHHHHHHHHhHhHHHhhHHHHHHH---HHHcCCcHHHHhhHHHHH
Confidence 99999999999999999999887 4445433332 234569999998876554
No 88
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=98.65 E-value=1.3e-06 Score=76.26 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=95.5
Q ss_pred CchHHHHHHHHHHHhccCccccccCccccccc-ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHH
Q 035612 346 GDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIA 424 (534)
Q Consensus 346 ~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~ 424 (534)
+.+..++..+.++..+-. -++.|| .+.+||+..+.+.|..-+-...+++|-.|+++++.....+..++.+-
T Consensus 24 NiGllAi~~A~vig~~~~--------g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~liP 95 (149)
T PF07158_consen 24 NIGLLAIAFAFVIGTFLA--------GMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPALIP 95 (149)
T ss_pred chHHHHHHHHHHHHHHHc--------CCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCceehH
Confidence 456666666654443211 246666 48999999999999999999999999999999998876666666666
Q ss_pred HHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 035612 425 PIVCLISAIITEFTS-NNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQF 475 (534)
Q Consensus 425 ~~~~~~~~~lt~f~S-n~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~ 475 (534)
+++++++.+++.+.. +.++.+++.|+..++|.+.|+||....+....+++.
T Consensus 96 ~v~f~~~~~lsa~G~g~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~a 147 (149)
T PF07158_consen 96 WVMFLLAAVLSAIGAGSIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQA 147 (149)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc
Confidence 788899999999944 667788999999999999999998887776655543
No 89
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=98.53 E-value=2.5e-05 Score=82.01 Aligned_cols=153 Identities=11% Similarity=0.037 Sum_probs=118.8
Q ss_pred ccCChHHHHhhhcc----------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Q 035612 104 GISSADTVAHSYMD----------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSM 173 (534)
Q Consensus 104 gi~~~~~v~~~~~~----------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~ 173 (534)
+..+.||+++...+ +++.++.+.-+++.+++.+|+.+.+++.+.+. +. ++..+.+.+.+.+.+.+.
T Consensus 288 r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~l-g~---~~~~illv~~il~~l~~~ 363 (455)
T PRK10654 288 RSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSF-GS---AGIILMLVLVILTMLAAI 363 (455)
T ss_pred hCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CC---ChHHHHHHHHHHHHHHHH
Confidence 67788888554433 68999999999999999999999999988776 43 345566666677777777
Q ss_pred hh-hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcc
Q 035612 174 WM-HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPIS 252 (534)
Q Consensus 174 ~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is 252 (534)
.. |++++...+.|++.++++++|.|| ..+...+..++++|....|++. +.++.+ +-.+++
T Consensus 364 ~~GSg~a~~~af~pi~~pia~~lG~~p----------v~~~~~~~~~~~~G~~~sPvs~--~ii~~a-------g~a~~~ 424 (455)
T PRK10654 364 TTGSGNAPFYAFVELIPKLAHSSGINP----------AYLTIPMLQASNLGRTISPVSG--VVVAVA-------GMAKIS 424 (455)
T ss_pred HccchHHHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhCcCCcchh--hHhhhh-------cccCCC
Confidence 77 999999999999999999999998 5677888889998888777643 344432 245789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035612 253 FSTWFCFGFPLALVIFVALWAILCLFY 279 (534)
Q Consensus 253 ~~~~~~~~~p~~li~~~~~~~~~~~~~ 279 (534)
..|..+...++.++..++..+....++
T Consensus 425 ~~~ivKrt~ip~ii~~iv~~i~~~~~~ 451 (455)
T PRK10654 425 PFEVVKRTSVPVLVGLLIVIVATEIMV 451 (455)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 999999977777776666655444433
No 90
>PRK10420 L-lactate permease; Provisional
Probab=98.52 E-value=0.00037 Score=74.82 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
+--|...+-+...++++..+++||....+++.+.. .+.-...+.-.+..+..++| .|||..-.++.++=...|+++|
T Consensus 403 k~~~~~~iti~~~vala~vm~~SGm~~~la~~~A~-~G~~yp~~aP~lG~lG~FvT--GS~TsSN~LF~~lQ~~tA~~lg 479 (551)
T PRK10420 403 KELALPIYSIGMVLAFAFISNYSGLSSTLALALAH-TGHAFTFFSPFLGWLGVFLT--GSDTSSNALFAALQATAAQQIG 479 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-hCccHHHHHHHHHhhhcccc--cccHHHHHHHHHHHHHHHHHcC
Confidence 44566778888999999999999999999998874 33322222223333333221 6999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcC--C-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTT--G-HIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~--g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+||..+.-.-+.+++.+.|- +|.|...... | .=+-.|.+|..++.++...++..++.+...
T Consensus 480 l~~~li~Aaq~~Gg~~GkmI---spq~I~~a~a~vg~~G~Eg~ilr~t~~~~l~~~~~~gi~~~~~~ 543 (551)
T PRK10420 480 VSDVLLVAANTTGGVTGKMI---SPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQA 543 (551)
T ss_pred CCHHHHHHHHHHhhHHhhcc---CHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987766677788888776 6777665432 2 225577888877777777666666666654
No 91
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=98.50 E-value=0.00079 Score=72.18 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=97.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
+--|...+-....++++..++++|..+.+++.+.. .+.-+..+.-.+..+..++| .|||..-.++.++=...|++.|
T Consensus 389 k~~~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~aP~iG~lG~FiT--GS~TsSN~LFg~lQ~~tA~~lG 465 (530)
T TIGR00795 389 KEMRLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFSPFLGWLGVFLT--GSDTSSNLLFGSLQLLTAEQIG 465 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHHHHHHhhhcccc--cchHHHHHHHHHHHHHHHHHcC
Confidence 34455677777778899999999999999999987 44433333323333333211 6999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcC--C-CCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTT--G-HIEIQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~--g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
.||....-.-+.+++.++|. +|.|...... | .=+-.|.+|..++.+++..++..++.+.+
T Consensus 466 l~~~li~A~q~~Gg~~G~mI---sp~~I~~a~a~vg~~G~Eg~ilr~t~~~~l~~~i~~gv~~~~~ 528 (530)
T TIGR00795 466 LPETLLLAANTVGGVMGKMI---SPQSIAIACAAVGLVGQESDLFRKTVKYSLIYAIIVGVVALLL 528 (530)
T ss_pred CCHHHHHHHHHHhHHHhhcc---CHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987766677888888777 7777665432 2 22557888888888877776666555543
No 92
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=98.46 E-value=0.00085 Score=69.82 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=99.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
+--|.-++-+....+++..+.++|....++..+...++ ....+--.+..+..++ -.|||..-..+-|+=...|++.|
T Consensus 376 k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~G~-~fp~fSp~lGwiG~Fl--tGS~T~sN~lFg~lQ~~~A~~iG 452 (522)
T COG1620 376 KELKLPILTIIFALAMAYLMNYSGLSKTLALALAHTGE-AFPLFSPFLGWIGVFL--TGSNTSSNLLFGPLQQTTAEQIG 452 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhcCC-CchhHhHHHHHHhhhh--cccchHHHHHHHHHHHHHHHHcC
Confidence 45677788899999999999999999999999887633 2222222334444432 26899999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcC--CC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTT--GH-IEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~--g~-~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
.||....-+-+.+...++|- +|.|..+... |. =+-.|.+|..+..+++..++..++.+...
T Consensus 453 ~s~~l~~AantvGg~~gkMI---spqsIa~acaavg~~gkEg~l~r~tv~~sl~~~~~~~i~~~l~~ 516 (522)
T COG1620 453 LSPVLLVAANTVGGVMGKMI---SPQSIAAACAAVGLVGKEGDLLRKTVKPSLIYLIIAGVITLLLA 516 (522)
T ss_pred CCHHHHHHHHhhhhhhcccc---CHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988766666677667776 7778666542 32 24567788877777776666666655544
No 93
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=98.44 E-value=9.7e-06 Score=85.36 Aligned_cols=310 Identities=15% Similarity=0.049 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCCcchh
Q 035612 125 GSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVPLQST 203 (534)
Q Consensus 125 g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~ 203 (534)
-....++.++|+|..|..-+......|+.+.+|.+.-. +.+.++.+.. |..+-++.-..+.++.+|+.|++|+
T Consensus 194 lFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aV---v~Sgl~G~isGSsvAN~vttG~fTIPlMkR~Gy~~~--- 267 (642)
T COG4666 194 LFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAV---VSSGLMGMISGSSVANTVTTGSFTIPLMKRAGYPPE--- 267 (642)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCccee---eecchhheecchhhhhhhhcceeeHHHHHhcCCChh---
Confidence 34455688999999999998888888877666654321 1222332222 3333344444556777999999884
Q ss_pred hhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 035612 204 LVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRG 283 (534)
Q Consensus 204 ~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~ 283 (534)
..-++=.+++.||-..|. -+-+..++-. +..+++|.|-.+.++.++++.....+.....--+|.+
T Consensus 268 --------~AgAvEaaAS~GGQimPP----iMGAAAFiMa---e~~gipY~~ii~aA~iPAllyy~~v~~~V~~eA~k~~ 332 (642)
T COG4666 268 --------FAGAVEAAASTGGQLMPP----VMGAAAFIMA---EYLGIPYTEIILAAFIPALLYYFGVILMVHLEAKKDG 332 (642)
T ss_pred --------cccceehhhhcCCchhhh----hHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 122344466667765432 2222222221 2458999999999999999988777666655444433
Q ss_pred CCCcchhhhhHHHHHHHHhhcCCCchhHH---HHHHHHHHHHHHHhhcccCCCCCCcccccccccCchHHH-HHHHH-HH
Q 035612 284 SGPALSEYLDKANLKRELDMLGPMAFAEK---MVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTAS-VSCDG-NI 358 (534)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~lg~~~~~e~---~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va-~l~~~-ll 358 (534)
.+ .+++ + ++++....-| ..+.-.++.+.+...+ . .|.. .+... ++... .+
T Consensus 333 ~~-gl~~----~-------~lp~~~~~l~~~~~~llPl~~LI~~L~~~-~---sp~~---------aa~~s~Il~~~~~~ 387 (642)
T COG4666 333 LP-GLPR----E-------QLPPLRPTLKEGWYYLLPLVLLIWLLGVG-Y---SPGR---------AALLSSILITALVL 387 (642)
T ss_pred CC-CCCh----h-------hCCchHHHHHhhhHHHHHHHHHHHHHHcC-c---CHHH---------HHHHHHHHHHHHHH
Confidence 21 1111 1 1333322222 2222222222222221 1 1111 12222 22221 22
Q ss_pred HhccCccccccCccccccc-------ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 035612 359 VVHNSEHEAKGEKLMDWNK-------CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLIS 431 (534)
Q Consensus 359 ~~l~~~~~~~~~~~l~~~~-------~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~ 431 (534)
...+.+..+.+ ..-+++ -.|..-++....++.-.+.+.++-||+...+++.+..+++.+....++....++
T Consensus 388 ~~~~~k~~~~g--~~~~~~l~~aLe~gar~~i~v~ia~A~aGIIvGvitlTGlg~~~s~~l~~l~~g~l~l~L~lt~~~s 465 (642)
T COG4666 388 RALFRKDTRMG--KILARDLLEALESGARNVIPVAIACATAGIIVGVVTLTGLGLKLSSLLLDLAGGNLLLLLVLTMVIS 465 (642)
T ss_pred HHHhcccccch--hhHHHHHHHHHHHhhHhHHHHHHHHHhhcceeeeEeecCchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22222111122 111122 135555666667777777788899999999999999888878777666667777
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcccCCC
Q 035612 432 AIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTG 482 (534)
Q Consensus 432 ~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~~~~~~~~P~~ 482 (534)
.++.+=...++.-.+..-++.+.-.++|++|+..-+-+-+-.-.+.+||.-
T Consensus 466 iiLGMGlPttanYIi~atl~aP~l~~~gv~~laaH~FVFYfGi~AdiTPPV 516 (642)
T COG4666 466 IILGMGLPTTANYIITATLAAPALIELGVPLLAAHFFVFYFGIMADITPPV 516 (642)
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHccCCChH
Confidence 777665666666666666666666678899987666554444456777653
No 94
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=98.42 E-value=0.00013 Score=74.99 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=91.9
Q ss_pred cCCCchHHH---HHHHHHHHHHHHHHhC-----HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Q 035612 379 KKLPWNIIL---LLGAGFAIADGVRTSG-----LADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLP 449 (534)
Q Consensus 379 ~~v~w~~i~---l~~~~~~l~~~l~~sG-----~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~P 449 (534)
.+-.+++++ +.+|.+.+ ++.+| +.+.+++.+...+....+. +..++.+.+++.| -|.-..=++=-|
T Consensus 308 ~~~~~gIllQFPfYAGImGm---m~~sgl~g~sLa~~is~~fvsiat~~TfP--~~~flsagivn~FVPSGGGqWaVqgP 382 (453)
T PF02667_consen 308 VRSAAGILLQFPFYAGIMGM---MTGSGLGGVSLAQVISNFFVSIATPTTFP--LFTFLSAGIVNFFVPSGGGQWAVQGP 382 (453)
T ss_pred hccccceeeechHHHHHHHH---HhhcCCCcchHHHHHHHHHHHhcCCccHH--HHHHHHHHHheeEecCCCceEEEecc
Confidence 355666664 56666644 44555 6779999887665433222 2445666666666 566666678899
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhccc-CCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 035612 450 LLIQIAKTMHVHPLLLMVPGAIGAQFSFLL-PTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMP 520 (534)
Q Consensus 450 i~~~la~~~g~~p~~~~l~~~~~~~~~~~~-P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~ 520 (534)
++.+.++++|+|+-...++.+.+....||. |+=.-|- .+..+++.||.+.+.+...+...++....++
T Consensus 383 ~~~~Aa~~Lgv~~~~~~ma~a~Gda~tNmiQPFWaLPl---L~I~GL~aRDImGy~~~~ll~~~~i~~~~l~ 451 (453)
T PF02667_consen 383 IVMPAAQALGVDLGKTVMAYAWGDAWTNMIQPFWALPL---LGIAGLKARDIMGYCVVILLVSGIIVSLGLL 451 (453)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887665 3322222 2445699999999998888777666655443
No 95
>PRK09695 glycolate transporter; Provisional
Probab=98.37 E-value=0.0014 Score=70.53 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=95.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMH 459 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g 459 (534)
+--|...+-+...++++..++.+|....+++.+.. .+.-...+.-.+..+..++| .|||..-.++.++=...|+++|
T Consensus 411 k~~~~~~lti~~~vala~vm~~SGm~~~La~~~a~-~G~~yp~~aP~iG~lG~FvT--GS~TsSN~LF~~lQ~~tA~~lG 487 (560)
T PRK09695 411 ISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLAG-TGVMFPFFSPFLGWLGVFLT--GSDTSSNALFGSLQSTTAQQIN 487 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-hCccHHHHHHHHhhhhcccc--cccHHHHHHHHHHHHHHHHHcC
Confidence 33455678888899999999999999999999963 33222222222333333211 6999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCCCCchhhHhhcC--C-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 460 VHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTT--G-HIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 460 ~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~--g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+||....-.-+.+++.+.|- +|.|...... | .=+-.|.+|..++.+++..++..++.+...
T Consensus 488 l~~~li~Aaq~~Gg~~GkmI---spq~I~~a~a~vgl~G~Eg~ilr~t~~~~l~~~~i~gi~~~~~~ 551 (560)
T PRK09695 488 VSDTLLVAANTSGGVTGKMI---SPQSIAVACAATGMVGRESELFRYTVKHSLIFASVIGIITLLQA 551 (560)
T ss_pred CCHHHHHHHHHHhhHHhhcc---CHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987766677778778776 7777665432 2 114567777777777766666655555544
No 96
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=98.30 E-value=0.00025 Score=73.74 Aligned_cols=147 Identities=19% Similarity=0.194 Sum_probs=110.0
Q ss_pred cCChHHHHhhh------cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhH
Q 035612 105 ISSADTVAHSY------MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNV 178 (534)
Q Consensus 105 i~~~~~v~~~~------~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~ 178 (534)
-.+.++..+.. ...+.+++.++..++..+..+|+.+.+++.+..... +++.+++.+.++..++.++++.+
T Consensus 258 ~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~----~~~~~Ll~i~~~~lvlGmfld~~ 333 (425)
T PRK15060 258 EMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVD----SPRLLFIVIMVAIMVVGMVMDLT 333 (425)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555554433 236778889999999999999999999999877633 57778888888899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
+...++.|+..++++++|.|| ..+..-......+|....|.| .|+.+.+- -.+.+..|-++
T Consensus 334 a~ili~~Pil~Pi~~~~Gidp----------v~fgii~~~~~~ig~iTPPvG--~~lfv~~~-------ia~~~~~~i~~ 394 (425)
T PRK15060 334 PTVLILTPVLMPLVKEAGIDP----------IYFGVMFIINCSIGLITPPVG--NVLNVISG-------VAKLKFDDAVR 394 (425)
T ss_pred HHHHHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHHhCCCCCcc--HHHHHHHH-------hcCCCHHHHHH
Confidence 999999999999999999998 233344444455565555554 35554431 23689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 035612 259 FGFPLALVIFVALWAI 274 (534)
Q Consensus 259 ~~~p~~li~~~~~~~~ 274 (534)
..+|..+..++...++
T Consensus 395 ~~~Pf~~~~~~~l~l~ 410 (425)
T PRK15060 395 GVFPYVLVLYSLLVLF 410 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988776655443
No 97
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=98.29 E-value=0.00019 Score=72.18 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 197 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~ 197 (534)
.+.+++.+.-..+..+...++-+.+++++..... ++..+++.+.+.-.++.++++.+++..++.|+..+++++.|.
T Consensus 231 ~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~----~~~~~ll~inl~llvvG~fmd~~a~ilil~Pil~Pi~~~~GI 306 (379)
T COG1593 231 VVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSD----SPLVVLLVINLLLLVVGTFMDLTAAILILTPILLPIAAALGI 306 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCC
Confidence 5677778888999999999999999999987754 577888888888999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035612 198 VPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
||- .+........++|...-|+|. |+.+.+- -.+.+..+..+.-+|..+..+...+++.
T Consensus 307 DPv----------hfGvv~v~Nl~IGliTPPvG~--~Lfv~s~-------V~~~~~~~~~k~i~Pfl~~~~~~L~li~ 365 (379)
T COG1593 307 DPV----------HFGVVFVLNLSIGLITPPVGM--VLFVASA-------VGKVPIEAVIKAILPFLVALILVLLLIT 365 (379)
T ss_pred Cce----------eeHHHHHHHHHhhCCCCCcch--hHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 983 344555666677877777774 4444331 2358888999999998887766665543
No 98
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=98.27 E-value=0.00034 Score=73.47 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=107.8
Q ss_pred CChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhH
Q 035612 106 SSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNV 178 (534)
Q Consensus 106 ~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~ 178 (534)
.+.+|+.+.+.. ..+.++++.--.-..++.+++.+.+|.+-....+....+...+..++.+.++++..|+ |..
T Consensus 327 ks~~Dv~~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgS 406 (508)
T PRK11339 327 RRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGS 406 (508)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHH
Confidence 577887766544 2233333333333667789999999888777744332344556688999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
+-.+++.|+..++...+|++|+ ...++-=++-+.....||. ++--.++.++++++ ..+.++++|+.
T Consensus 407 akwai~aPIfVPm~~llGisPe----------~tq~AyRiGDs~TNiItPl-~~y~~lil~~~~~y---~k~~g~Gtlis 472 (508)
T PRK11339 407 AIWSILAPIFVPMFMLLGFHPA----------FAQILFRIADSSVLPLAPV-SPFVPLFLGFLQRY---KPDAKLGTYYS 472 (508)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHccchhhhcCCc-hHHHHHHHHHHHHh---ccCCCHhHHHH
Confidence 9999999999999999999984 1222333344545566666 24445667788766 56899999999
Q ss_pred HHHHHHHHHHHHH
Q 035612 259 FGFPLALVIFVAL 271 (534)
Q Consensus 259 ~~~p~~li~~~~~ 271 (534)
+.+|.++..++..
T Consensus 473 ~mlPysi~~lv~w 485 (508)
T PRK11339 473 LVLPYPLIFLVVW 485 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776553
No 99
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=98.21 E-value=0.00088 Score=70.68 Aligned_cols=152 Identities=11% Similarity=0.130 Sum_probs=111.0
Q ss_pred CChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhH
Q 035612 106 SSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNV 178 (534)
Q Consensus 106 ~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~ 178 (534)
.+.+|+.+.+.+ ....++...--+...++++++.+.++.+.....+....+......++++..+++..|+ |..
T Consensus 329 k~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~S 408 (513)
T TIGR00819 329 RGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASAS 408 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHH
Confidence 577888776655 3444444444555789999999999999877774333445567788999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
+-.+++.||..++++.+|.+|+ ....+--++-+.....+|+. |--.++.++++++ ..+.+.++.+.
T Consensus 409 gkwal~aPI~vPm~~~lGisp~----------~t~~AyriGDs~tNiItP~~-~y~~lil~~~~~y---~k~~g~Gtl~s 474 (513)
T TIGR00819 409 AIWAILAPIFVPMFMLAGFAPA----------FAQAAFRIADSSTLIIAPMM-PFFGLFLAFLMKY---KKDAGLGTLIS 474 (513)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHhchHHHhhccCc-chHHHHHHHHHHh---ccCCcHHHHHH
Confidence 9999999999999999999884 22233333444444454442 2226778888877 67889999999
Q ss_pred HHHHHHHHHHHHH
Q 035612 259 FGFPLALVIFVAL 271 (534)
Q Consensus 259 ~~~p~~li~~~~~ 271 (534)
.++|.++..++..
T Consensus 475 ~mlPysi~~l~~w 487 (513)
T TIGR00819 475 LMLPYPAFFLIAW 487 (513)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998765543
No 100
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=98.17 E-value=0.00017 Score=74.55 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLP 196 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g 196 (534)
.+..++.++.+++..++.+|..+.+++.+.+. +. ++...++...+...++++++ ++++....+.|++.++++++|
T Consensus 259 ~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~-~~---~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~~PIl~pia~~~G 334 (388)
T TIGR00771 259 NVVGLIVAASVFAAGLKTIGAVDAAISFAKES-GL---GNIFVMWGATIGPFLMALITGSGNAPFIAFNTAIPPHAVELG 334 (388)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 68889999999999999999999999998876 22 56666677777777789999 789999999999999999999
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHH
Q 035612 197 EVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIF 268 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~ 268 (534)
.|| ..+......+.++|....|.| .|+.+.. +-.+++..|..+..+|+.+..+
T Consensus 335 idp----------v~~gi~~~i~~~iG~~tpPv~--~~l~v~~-------gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 335 YTH----------VNLGMPMAIAGALGRTASPIA--GVVVVCA-------GLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred CCH----------HHHHHHHHHHHHHhCcCCcHH--HHHHHHH-------hhcCCCHHHHHHHHHHHHHHhc
Confidence 998 346666677777787777775 3444442 2347899999999999987653
No 101
>PRK11588 hypothetical protein; Provisional
Probab=98.06 E-value=0.00068 Score=71.32 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=103.5
Q ss_pred ccCChHHHHhhhcchHH------HHHHHHHHHHHHH-----HHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Q 035612 104 GISSADTVAHSYMDDVI------ALVLGSFILALAV-----EHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVS 172 (534)
Q Consensus 104 gi~~~~~v~~~~~~~~i------~li~g~~~l~~~l-----~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS 172 (534)
+-++++|..+.|.+..= +++.-.--+...+ ++....+.+.+......++- ++.....++++...++.
T Consensus 335 ~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~l--p~~~~ai~m~i~~~~lN 412 (506)
T PRK11588 335 NGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGL--PDAVSAWFMLLFQSVFN 412 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHH
Confidence 45688998887766322 2222223334556 44547777777777776642 45566678888899999
Q ss_pred Hhh-hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCc
Q 035612 173 MWM-HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPI 251 (534)
Q Consensus 173 ~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~i 251 (534)
.++ |..+-+++.+||..++++..|.+|+ ...++--++.......+|+. ....+.+. -.++
T Consensus 413 ffIpSgSGqAaitmPIm~Plad~lGisrq----------~avlAfq~GDg~tNlI~Pts----~~lm~~La-----ia~I 473 (506)
T PRK11588 413 FFVTSGSGQAALTMPLMAPLADLVGVNRQ----------VAVLAFQLGDGFTNIIYPTS----ASLMATLG-----VCRV 473 (506)
T ss_pred eEecChHHHHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHHhHHHHHhhhhH----HHHHHHHH-----HhCC
Confidence 998 9999999999999999999999872 24455555665555665552 22222222 3589
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 035612 252 SFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 252 s~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
+|.+|+++.+|+.++.+++....+
T Consensus 474 py~kW~Kf~~pl~~i~~v~~~v~l 497 (506)
T PRK11588 474 DFGNWLKFIWRFLLLLFIMSSVVV 497 (506)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887776655443
No 102
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=98.06 E-value=0.0021 Score=70.20 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 197 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~ 197 (534)
.+.+.+.+.-+++..+..+|+.++++..+....++ ++...++..+++..++.++++.++...++.|+..++.+++|.
T Consensus 392 ~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~---~~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~P~l~~lGi 468 (613)
T TIGR02123 392 PVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGG---NLFLLLILTMIACIILGMGLPTTANYIITATLAAPALIALGV 468 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCC
Confidence 67788888999999999999999999999887543 467777778888899999999999999999999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 035612 198 VPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWA 273 (534)
Q Consensus 198 ~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~ 273 (534)
|| ...-+-+.+.+.+|...-|+| .|..+..- -.+.+..+-.+..+|..+...++..+
T Consensus 469 dp----------i~~~~~v~~~~~ig~iTPPvg--l~lfvaa~-------Ia~~~~~~~~~~~~p~~~~~~~~~~l 525 (613)
T TIGR02123 469 PP----------IAAHMFVFYFGILADITPPVA--LAAFAAAG-------IAGADPMKTGFEAFKLALAGYLVPFM 525 (613)
T ss_pred CH----------HHHHHHHHHHHHHHcCCCCch--HHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98 345555666666665554443 34444431 23567777788888888776665443
No 103
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=98.04 E-value=0.00025 Score=75.34 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=102.6
Q ss_pred cCChHHHHhhhcc---hH--HHHHHHHHHH-HHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hh
Q 035612 105 ISSADTVAHSYMD---DV--IALVLGSFIL-ALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HN 177 (534)
Q Consensus 105 i~~~~~v~~~~~~---~~--i~li~g~~~l-~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn 177 (534)
..+++|..+.|.+ +. ..+++|...- ...+++.+..+-+.+.+....++. +......++++...+++.++ |.
T Consensus 304 ~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~--~~~~~~~~m~~~~~~~~fli~SG 381 (465)
T PF03606_consen 304 GKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGL--PGVIAAIGMFLIQFLINFLIGSG 381 (465)
T ss_pred cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHeeecCCc
Confidence 6778887776644 22 2223322222 233444455666666555554432 33444566667778888887 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHH
Q 035612 178 VAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWF 257 (534)
Q Consensus 178 ~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~ 257 (534)
++-+...+|++-++++..|.++ ....++.-++++++-+.+|+.... +... +-.++++.+|+
T Consensus 382 sg~a~~~mpim~plad~~Gi~~----------q~~vla~q~g~gl~n~isPtsg~~-m~~l--------~ia~V~~~~w~ 442 (465)
T PF03606_consen 382 SGQAAAFMPIMPPLADLLGITR----------QTAVLAFQFGDGLGNSISPTSGVL-MAVL--------GIAKVSYGKWV 442 (465)
T ss_pred hHHHHHHHHhHHHHHHHcCCCH----------HHHHHHHHHHHHHHhhccchHHHH-HHHh--------hhcCCCHHHHH
Confidence 9999999999999999999987 357788888999888887764321 1222 24689999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035612 258 CFGFPLALVIFVALWAILC 276 (534)
Q Consensus 258 ~~~~p~~li~~~~~~~~~~ 276 (534)
++..|+.++..++....+.
T Consensus 443 K~~~~~~~~~~v~~~v~l~ 461 (465)
T PF03606_consen 443 KRTWPPMLIWFVLSIVFLI 461 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988777765543
No 104
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0073 Score=58.69 Aligned_cols=346 Identities=16% Similarity=0.146 Sum_probs=171.3
Q ss_pred cCChhhHHHHHHHHHHHh--ccCC-hHHHHhh-h---cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChh
Q 035612 86 AVPMPITSMAPLFLFPLF--GISS-ADTVAHS-Y---MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPP 158 (534)
Q Consensus 86 ~ip~~~~al~~~~l~~l~--gi~~-~~~v~~~-~---~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~ 158 (534)
+++.++.-..+...+.++ |+.. -+..+.+ . .+..+..++-.+.++..+++.|-.+|...-+...++++
T Consensus 21 kvnigiSif~Gal~lall~Lg~~g~l~~~~~s~~s~st~~lIviv~fim~l~~~me~~G~l~k~~~gll~lfpk~----- 95 (388)
T COG1906 21 KVNIGISIFLGALTLALLSLGIRGILLSLYLSVSSWSTWRLIVIVIFIMGLGYVMEQIGYLEKVEEGLLHLFPKH----- 95 (388)
T ss_pred hhchhhhHHHHHHHHHHHhcCcchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHhcchh-----
Confidence 555565555555554443 3332 1122222 2 22566677788889999999999999999998887632
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhh--hhH--HHHHHHHHhhhccccccccchhH
Q 035612 159 LLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKY--CKA--VVLGVIYSAAVGGMSTLTGTGVN 234 (534)
Q Consensus 159 ~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~--~~~--l~l~i~~aa~igg~~t~~g~~~n 234 (534)
..+.+-....++-| . +-+.+-.|+..+.++++|.+|++ +.-.|+ ++. ....+. |.
T Consensus 96 -s~~~iPalIGLmPM--P--gGAliSApmi~p~~~k~~l~pe~-kt~iNYwfRHiwe~~WPly---------------qa 154 (388)
T COG1906 96 -SLWTIPALIGLMPM--P--GGALISAPMIEPLAKKFGLNPEK-KTFINYWFRHIWELFWPLY---------------QA 154 (388)
T ss_pred -HHHHHHHHHcCcCC--C--CcceEeeeeccccchhccCCHHH-HHHHHHHHHHHHHHhccch---------------HH
Confidence 12222222222222 1 22345567788889999998842 111111 111 111111 22
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhHHHHHHHHhhcCCCchhHHHH
Q 035612 235 LILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFYCSRGSGPALSEYLDKANLKRELDMLGPMAFAEKMV 314 (534)
Q Consensus 235 ~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~e~~~ 314 (534)
.++.+ .-.+++..+.....+|.++++....|+....-.+++.++++ ..++.... ...
T Consensus 155 Vvi~s-------av~gvs~~~vs~~~fP~~iia~t~G~lff~~~l~~~~~~~r--------nl~~~l~n--------lyP 211 (388)
T COG1906 155 VVITS-------AVLGVSIREVSVKMFPLTIIALTIGYLFFNGPLKERLSKSR--------NLRDLLIN--------LYP 211 (388)
T ss_pred HHHHH-------HHhcCcHHHHHHHHhHHHHHHHHHHHHHhcccchhhhhcCC--------CHHHHHHH--------Hhh
Confidence 22221 12478999999999999999877766533221111111100 01111111 111
Q ss_pred HHHHHHHHHHHhhcccCCCCCCcccccccccCchHHHHHHHHHHHhccCccccccCccccccc-c-cCCCchHHHHHHHH
Q 035612 315 LAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVSCDGNIVVHNSEHEAKGEKLMDWNK-C-KKLPWNIILLLGAG 392 (534)
Q Consensus 315 l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~ll~~l~~~~~~~~~~~l~~~~-~-~~v~w~~i~l~~~~ 392 (534)
++...++-++.-. |-..+.+.+.+....++. .+.-..++ + +.++-.+++++.+.
T Consensus 212 i~~vl~lsvll~L-------------------dll~gs~~~~ls~~i~n~-----~r~~~l~e~lkrafnprI~~lliav 267 (388)
T COG1906 212 IAIVLVLSVLLGL-------------------DLLYGSFVAFLSISIPNV-----FRIRYLLEVLKRAFNPRIVLLLIAV 267 (388)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHcCchhHHHHHHH
Confidence 2211111111111 111222222222233321 01111222 2 34544488999999
Q ss_pred HHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 035612 393 FAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIG 472 (534)
Q Consensus 393 ~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~~~l~~~~~ 472 (534)
+.+-+.+++||+.+..++.+.... .|+.+.+...++..+.|.. .-+.+.+..|.+.+.-+. .+- .++ +++
T Consensus 268 mvfk~vIe~SGl~e~~ae~~l~f~--aP~al~l~~~fiiGlaTGI--~fayvsiafPlL~pff~g--~~~--lal--ay~ 337 (388)
T COG1906 268 MVFKEVIEHSGLVEIFAEIMLSFH--APVALFLLLTFIIGLATGI--EFAYVSIAFPLLMPFFTG--FKK--LAL--AYA 337 (388)
T ss_pred HHHHHHHHhccHHHHHHHHHhccc--hhhHHHHHHHHHHHHhhhh--HHHHHHHhhhhhHHHhcc--chH--HHH--HHH
Confidence 999999999999998788765432 2333332332444443332 234456778888777653 222 222 233
Q ss_pred Hhh-hccc-CCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHH
Q 035612 473 AQF-SFLL-PTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAM 515 (534)
Q Consensus 473 ~~~-~~~~-P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~ 515 (534)
.+. |.++ |++ -.-.....+-+.+..|..|-.+....+..++.
T Consensus 338 ggy~GvmlSPvH-lClVlsaeyy~~ei~kvyrklllpavlt~~l~ 381 (388)
T COG1906 338 GGYMGVMLSPVH-LCLVLSAEYYKAEIGKVYRKLLLPAVLTFALV 381 (388)
T ss_pred hhhhheecchhh-hhhheeHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333 5444 442 22222222335567777777666665544443
No 105
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=98.01 E-value=0.00098 Score=69.84 Aligned_cols=146 Identities=22% Similarity=0.253 Sum_probs=110.4
Q ss_pred ccCChHHHHhhh------cchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhh
Q 035612 104 GISSADTVAHSY------MDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHN 177 (534)
Q Consensus 104 gi~~~~~v~~~~------~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn 177 (534)
+-.+.++..+.. ...+.+++.+.-+++..+..+|+.+.+++++....+ ++...++...++..++.++++.
T Consensus 257 ~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~----~~~~~l~l~~l~~lilG~~m~~ 332 (416)
T PF06808_consen 257 RRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSG----SPWLVLLLIMLILLILGMFMDT 332 (416)
T ss_pred cccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCc----chHHHHHHHHHHHHHHhccccH
Confidence 344555554433 236788889999999999999999999999887654 3566677788888889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHH
Q 035612 178 VAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWF 257 (534)
Q Consensus 178 ~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~ 257 (534)
++...+..|+..++.+++|.|| ...-+.+.+.+.+|...-|+| .|..+..- -.+.+..+-+
T Consensus 333 ~a~~ii~~pi~~P~~~~~Gidp----------i~~g~~~~~~~~ig~iTPPvg--l~lfva~~-------ia~~~~~~i~ 393 (416)
T PF06808_consen 333 TAAIIIVAPILAPIAQALGIDP----------IHFGVFMFYNAEIGLITPPVG--LNLFVAAG-------IAGVPMEKIF 393 (416)
T ss_pred HHHHHHHHHHHHHHHHHhCcch----------hhHHHHHHHHHHhcCCCCCcc--HHHHHHHH-------HhCCCHHHHH
Confidence 9999999999999999999998 346666777777776655554 45554432 2357888889
Q ss_pred HHHHHHHHHHHHHHH
Q 035612 258 CFGFPLALVIFVALW 272 (534)
Q Consensus 258 ~~~~p~~li~~~~~~ 272 (534)
+..+|...+......
T Consensus 394 ~~~~Pf~~~~~~~l~ 408 (416)
T PF06808_consen 394 RGILPFIFVLLVALL 408 (416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877655543
No 106
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=98.01 E-value=0.005 Score=60.10 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=36.3
Q ss_pred hcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Q 035612 476 SFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFL 518 (534)
Q Consensus 476 ~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~ 518 (534)
|-|+-.|+-||.+..|.=+++.|||.|.|.|+.++.+++..++
T Consensus 301 GGMlIPGNIPNIIsAgkL~I~skEWar~gvPlGl~~m~~yfi~ 343 (347)
T PF07854_consen 301 GGMLIPGNIPNIISAGKLKITSKEWARLGVPLGLVLMVVYFII 343 (347)
T ss_pred CCeecCCCcchhhccccCccchHHHHHHcccHHHHHHHHHHHH
Confidence 4577788999999999889999999999999998777665443
No 107
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=97.99 E-value=0.00086 Score=67.35 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLP 196 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g 196 (534)
+++++++....++..++++|..+.+.+++.++.. +++.+....++.+.+++... ++..+.+++.|++.++.++.|
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~----~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g 237 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIK----SPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMG 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 6888888999999999999999999998888764 46778888888899998877 777888999999999999999
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHhhhccccccccchh
Q 035612 197 EVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGV 233 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~ 233 (534)
.++ +.+.-.+.-++..+....|.++..
T Consensus 238 ~~~----------~~~a~ai~~~~~~g~~l~P~s~~~ 264 (303)
T PF03553_consen 238 ISP----------PLLAGAIESGATFGDPLSPWSDTT 264 (303)
T ss_pred ccH----------HHHHHHHHhhhhhcCCCCcchHHH
Confidence 887 234445555677777788886644
No 108
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=97.86 E-value=0.0018 Score=65.02 Aligned_cols=108 Identities=24% Similarity=0.251 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCCh
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHP 462 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p 462 (534)
++++++..+.++++.++++|..+.+.+.+......+.. ......+++.+++.. .|+..+..+..|++.+++++.|.||
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~~~-l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g~~~ 240 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSPRS-LPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMGISP 240 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCccH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccH
Confidence 36677777889999999999777777766543322332 333455555555544 6888999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-cccCCCCchhhHhhcC
Q 035612 463 LLLMVPGAIGAQFS-FLLPTGTPSNIVGFTT 492 (534)
Q Consensus 463 ~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~ 492 (534)
....-.+.-++.++ .+.|++..........
T Consensus 241 ~~~a~ai~~~~~~g~~l~P~s~~~i~~~~~~ 271 (303)
T PF03553_consen 241 PLLAGAIESGATFGDPLSPWSDTTILSSSTL 271 (303)
T ss_pred HHHHHHHHhhhhhcCCCCcchHHHHHHHHHH
Confidence 87766666566665 8899977655444433
No 109
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=97.81 E-value=0.012 Score=61.91 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=108.4
Q ss_pred CChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhH
Q 035612 106 SSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNV 178 (534)
Q Consensus 106 ~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~ 178 (534)
-+.+|+.+...+ +.+.+.+...-+-+.++.||+.+.+|-+-....+........++.++.+.++++-.|+ |..
T Consensus 322 ks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 322 KSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 356676554433 3444444444455889999999999987766665443455678889999999999999 888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
|-=+++.|+.+++.-.+|++|+-.| .+-=.+-+.....||. .+--.++.++++++ ..+.+.++.+.
T Consensus 402 aKWailAPifVPM~m~lg~sP~~tQ----------~aYRigDS~TN~ItPl-~~yf~lil~~~qkY---~k~~giGTlis 467 (502)
T PF03806_consen 402 AKWAILAPIFVPMFMLLGYSPALTQ----------AAYRIGDSSTNIITPL-MPYFPLILGFAQKY---DKKAGIGTLIS 467 (502)
T ss_pred hhHHHHHhHHHHHHHHcCCCHHHHH----------HHHHhccccccccCcc-HHHHHHHHHHHHHh---CcCccHHHHHH
Confidence 8889999999999999999995211 1111233333445554 23345778888877 67899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 035612 259 FGFPLALVIFVALWA 273 (534)
Q Consensus 259 ~~~p~~li~~~~~~~ 273 (534)
.++|.++...+...+
T Consensus 468 ~mlPysi~~lv~w~~ 482 (502)
T PF03806_consen 468 LMLPYSIAFLVVWTL 482 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877655333
No 110
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=97.73 E-value=0.0031 Score=66.76 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=92.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-cc-ccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EA-APYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAK 456 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~-~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~ 456 (534)
.+.-|++.+.++.+..+|+.++++|..+++++.+.+. +. ..++.+. +... +++....-.....++.|++.++++
T Consensus 55 g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~r~~~a~~-~~~~---ilgi~~f~~~~~vil~Pi~~~l~~ 130 (440)
T TIGR00791 55 GGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKSRVQWAVV-IAGL---IVGLALFFEVGFVLLIPLVFSIAA 130 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccchHHHHH-HHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566999999999999999999999999999998754 32 2333332 2222 222221112236689999999999
Q ss_pred HcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGI 512 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ 512 (534)
+.|.++..+.++.+.+.... ...|.+.+++. +.+.-+.+..+++..|++..+...
T Consensus 131 ~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~~-~a~~~g~~~~~~~~~gl~~~i~~~ 186 (440)
T TIGR00791 131 EAKISLLKLGIPMVAALSVAHGFLPPHPGPTA-IANEYGADIGEVLLYGLIVAIPTV 186 (440)
T ss_pred HhCCChHHHHHHHHHHHHHhceeCCCCccHHH-HHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999998877776665554 46788666654 444456789999999999888753
No 111
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=97.69 E-value=0.0047 Score=65.25 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCCh
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHP 462 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p 462 (534)
..++.+.-.-++......+|..+.+...-.+. .++..+....++++.+++.. .|...+...+.|++.+++..+|+||
T Consensus 68 ~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~--i~p~~~~~~~Fl~~~~~s~~~Gss~gt~~~~g~~l~~i~~~~g~~~ 145 (454)
T TIGR00931 68 KAILILALVGILIGTWIMGGTVPTLIYYGLSI--ISPEWFAVSTLLICMIVSSFTGTSWGTVGTIGVAMMGIGTGLGIDL 145 (454)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33444444445567888999988887543333 34555556777888888766 7788889999999999999999998
Q ss_pred HHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035612 463 LLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGA 524 (534)
Q Consensus 463 ~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~ 524 (534)
...+=++.-++.+| .+.|.+..+|..... .+.+..|++|.-.+.++...++..+....++.
T Consensus 146 ~~~agai~sGa~fGD~~sP~Sdtt~l~a~~-~~~~~~~~v~~~~~~~~~a~~i~~v~~~i~g~ 207 (454)
T TIGR00931 146 AIAAGAVVCGAYFGDKLSPLSDTTNFASGI-VGVDLFDHIRHLLYTTVPSFVITAILFLVIGR 207 (454)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76555555556667 899998888765544 45899999999999999999988888777774
No 112
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=97.58 E-value=0.026 Score=58.55 Aligned_cols=141 Identities=10% Similarity=0.003 Sum_probs=110.5
Q ss_pred Hhhhcc---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHH
Q 035612 112 AHSYMD---DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPV 187 (534)
Q Consensus 112 ~~~~~~---~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi 187 (534)
+++.++ +++-+++++-+++.+++..|+.|.+.+..-.. |. +.....+.+..++++.+... |.+|...-+.|.
T Consensus 306 f~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~-g~---g~~~~~lv~~~i~~l~a~l~GSGnAaffAF~~l 381 (455)
T PRK09804 306 FDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHS-GL---GGIGVMIIMALVIAICAIVMGSGNAPFMSFASL 381 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhC-CC---chHHHHHHHHHHHHHHHhhhcCchHHHHHHHHH
Confidence 455555 78999999999999999999999998876443 32 34445556666677777666 999999999999
Q ss_pred HHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 035612 188 ATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI 267 (534)
Q Consensus 188 ~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~ 267 (534)
+-.+++++|.++ ..+.+++-.++++|=..+|+... .++.+ +..++|-.|-.+...++.+..
T Consensus 382 vp~iA~~~G~~~----------~~l~lpmq~as~lgRt~SPVagv--iIavA-------g~a~vSP~eiVKRTavPml~g 442 (455)
T PRK09804 382 IPNIAAGLHVPA----------VVMIMPMHFATTLARAVSPITAV--VVVTS-------GIAGVSPFAVVKRTAIPMAVG 442 (455)
T ss_pred hHHHHHHcCCCH----------HHHHHHHHHHHhhccccCchhhH--Hhhhc-------cccCCCHHHHHHHhHHHHHHH
Confidence 999999999998 46889999999999999888532 23332 357899999999998888887
Q ss_pred HHHHHHHH
Q 035612 268 FVALWAIL 275 (534)
Q Consensus 268 ~~~~~~~~ 275 (534)
++...+..
T Consensus 443 ~i~~~i~~ 450 (455)
T PRK09804 443 FVVNMIAT 450 (455)
T ss_pred HHHHHHHH
Confidence 76665443
No 113
>COG1288 Predicted membrane protein [Function unknown]
Probab=97.42 E-value=0.0077 Score=61.30 Aligned_cols=152 Identities=19% Similarity=0.327 Sum_probs=106.2
Q ss_pred HhccCChHHHHhhhcchHHHHHHHHHHHHHH------HHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh
Q 035612 102 LFGISSADTVAHSYMDDVIALVLGSFILALA------VEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 175 (534)
Q Consensus 102 l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~------l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i 175 (534)
+.+-++.+|..++|.+..-=++.+.++++.+ +++.-+.|-+-+...+...+ .+.....++..+.-.+++.++
T Consensus 316 ~I~glse~~~~~sF~~Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsg--ls~~~f~i~mli~~~~l~f~V 393 (481)
T COG1288 316 LIGGLSENDIASSFIEGASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSG--LSSAVFAIGMLIFQALLNFFV 393 (481)
T ss_pred HHhccchhHHHHHHHHhHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHheEEE
Confidence 4456889999999999887788888887754 56666777777777666543 234445566777788888888
Q ss_pred -hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchH
Q 035612 176 -HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFS 254 (534)
Q Consensus 176 -sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~ 254 (534)
|...-+++-+||..++++-.|.++. ....+.-.+..+..+.+|++ -++.+.++ -.+++|.
T Consensus 394 pS~SG~A~ltMPImAPLaD~vgv~Rq----------vvV~Afq~g~G~~n~I~PTS----g~~ma~La-----~~~i~y~ 454 (481)
T COG1288 394 PSGSGLAVLTMPIMAPLADLVGVPRQ----------VVVLAFQLGDGFSNIIAPTS----GLLMATLA-----MARVPYG 454 (481)
T ss_pred eCCCchhHhhchhhhhhHHhcCCCHH----------HhhhhhhhcchhhheecCch----HHHHHHHH-----HccCChh
Confidence 7778889999999999999998762 23344444444444555542 23333333 3489999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035612 255 TWFCFGFPLALVIFVALWAI 274 (534)
Q Consensus 255 ~~~~~~~p~~li~~~~~~~~ 274 (534)
.|+++..|+..+..++...+
T Consensus 455 ~W~Kfv~pl~~i~~li~~~~ 474 (481)
T COG1288 455 TWLKFVAPLLGILFLISSVV 474 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776665443
No 114
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=97.41 E-value=0.0098 Score=59.26 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 035612 72 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALN 145 (534)
Q Consensus 72 l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~ 145 (534)
+.+++..+.+.+...+|.++.-+++..+....+.-+.||-.+.... ...-++++.=++-..++.||..|.+|..
T Consensus 237 ~lLtl~lm~~Lv~gi~p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvdama~s 316 (433)
T COG2851 237 LLLTLALMGLLVSGIFPPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVDAMAKS 316 (433)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHHHHHHH
Confidence 4556667777778888888888888777777777766665443322 3555566666666889999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccc
Q 035612 146 ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGM 225 (534)
Q Consensus 146 i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~ 225 (534)
+.+..-.. .+|. +.+..-+.+.-+..++||+|--.-+.||+...+.++|.+| ..+++++.+|..
T Consensus 317 i~~vIP~~-lgpy-l~~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~yGv~p--------------v~~A~AsiiGq~ 380 (433)
T COG2851 317 IVSVIPDA-LGPY-LPLIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAYGVEP--------------VEIARASIIGQP 380 (433)
T ss_pred HHHhCcHh-hcch-HHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHcCCCH--------------HHHHHHHHhCCc
Confidence 99886432 2332 2223333344444566999999999999999999999988 345666666655
Q ss_pred cccccc--hhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 035612 226 STLTGT--GVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI 267 (534)
Q Consensus 226 ~t~~g~--~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~ 267 (534)
.+..+. |.-.+..| -.+++++||-++++-.....
T Consensus 381 vh~lSPlvPat~Llvg--------La~v~~gdh~k~a~~wa~~~ 416 (433)
T COG2851 381 VHFLSPLVPATYLLVG--------LAKVDMGDHQKFALKWAWGI 416 (433)
T ss_pred ceeeccchHHHHHHHH--------hhcCChhHHHHHHHHHHHHH
Confidence 444432 22233443 34678888877766555433
No 115
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=97.33 E-value=0.017 Score=60.05 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhcccc-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAP-YLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTM 458 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~-~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~ 458 (534)
+.--..-..++-+-.+|+.+++||..+.+++.+.+.-+.. ... .+.+.+.+++--.+=.....++.|+..+++++.
T Consensus 57 gtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~kr~~~---Al~l~g~i~~~~vF~dv~~v~l~Pia~alak~~ 133 (442)
T COG2610 57 GTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEKRALL---ALVLAGLILGIPVFFDVGFVLLIPLAFALAKEA 133 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcchHHH---HHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHc
Confidence 4444445566667778899999999999999987643333 222 233344444434556677789999999999999
Q ss_pred CCChHHHHHHHHHHHhh-hcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHH
Q 035612 459 HVHPLLLMVPGAIGAQF-SFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAG 511 (534)
Q Consensus 459 g~~p~~~~l~~~~~~~~-~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~ 511 (534)
++++..+..+++.+... ....|++.+|-..+-.. +.+.....-.|....+..
T Consensus 134 ~is~~~i~v~la~g~~~~h~~vpP~Pgpia~a~~~-~a~~g~~il~g~ivaip~ 186 (442)
T COG2610 134 GISLLKIAVPLAAGLSVTHMFVPPHPGPIAAAGPF-GADIGTVILYGLIVAIPT 186 (442)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCchhhhhhhc-CcchhHHHHHHHHHHHHH
Confidence 99999988888777754 46778876665554333 455777888887777763
No 116
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=97.29 E-value=0.0013 Score=65.70 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=103.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEF--TSNNATTTLVLPLLIQIA 455 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f--~Sn~a~~~il~Pi~~~la 455 (534)
.+.||+++..+.+..+-+.+++.+|-.|++.+.-.++ ..+|..... +-=+++.++|.+ +.|+ +..++|+..++|
T Consensus 40 g~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~-lAP~vt~~~T~~~GTgh~--a~s~lPVI~eVA 116 (364)
T PF03605_consen 40 GSPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITF-LAPLVTYLFTFLAGTGHV--AYSLLPVIAEVA 116 (364)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEE-ehhHHHHHHHHHhcccHH--HHHhhHHHHHHH
Confidence 4689999999999999999999999999998776543 334432111 111233333333 2333 356899999999
Q ss_pred HHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhh--cC-CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035612 456 KTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGF--TT-GHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGA 524 (534)
Q Consensus 456 ~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~--~~-g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~~ 524 (534)
..-|+.|.--+-...++++.+ ...|++...-.+.. .. .++++.|.+...+|-++++.++..++.+.+|.
T Consensus 117 ~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~iL~V~iPat~ig~~~~a~~~~~~Gk 189 (364)
T PF03605_consen 117 KENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQILAVTIPATLIGVLVAAFVSSRRGK 189 (364)
T ss_pred HHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 999998854444445777777 77888766554442 23 57999999999999999999998888876654
No 117
>PRK10034 fructuronate transporter; Provisional
Probab=97.29 E-value=0.018 Score=60.44 Aligned_cols=131 Identities=19% Similarity=0.250 Sum_probs=92.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPY--LAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAK 456 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~--~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~ 456 (534)
.+.-++..+.++.+..+|+.+++||..+.+++.+.+.-+... +.+. +...+.. ..-| -.....++.|++.++++
T Consensus 58 g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~~~a~~-l~g~llG-i~vF--~dv~~v~laPi~~~lak 133 (447)
T PRK10034 58 GNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLSVI-IIGLIFG-LAMF--YEVAFIMLAPLVIVIAA 133 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccchHHHHH-HHHHHHh-hHHH--HHhHHHhhHHHHHHHHH
Confidence 356778888888888999999999999999999886543322 2222 2222211 1122 12345678999999999
Q ss_pred HcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
+.+.++....++++.+...+ .+.|++-.| ..+.+.=+.+..+++-+|++..+...++
T Consensus 134 ~~~~s~~~~~~~l~~gl~~~h~lvPP~Pgp-la~a~~l~a~lG~~il~Gl~v~ip~~~~ 191 (447)
T PRK10034 134 EAKIPFLKLAIPAVAAATTAHSLFPPQPGP-VALVNAYGADMGMVYIYGVLVTIPSVIC 191 (447)
T ss_pred HhCcCHHHHHHHHHHHHHHhhcccCCCCcH-HHHHHHhCCcHHHHHHHhhHHHHHHHHH
Confidence 99999999998887777775 677884333 3333444788999999999888877433
No 118
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=97.29 E-value=0.023 Score=58.74 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=94.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHh-CHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTS-GLADDLSKALDFLEA-APYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAK 456 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~s-G~~~~ia~~l~~l~~-~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~ 456 (534)
...+|+.+-++.+...+.+.++++ |..|.+++.+.++-+ .+......+ +.++ .-.+.+.++.|++.++++
T Consensus 52 ~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~~~~~~ap~l----iG~l----Pv~~g~vilaPlv~~la~ 123 (387)
T TIGR00529 52 ADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSKNSDSFVPAL----IGLM----PMPGGALFSAPMVKNSLK 123 (387)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCcccHHHHHHH----HHHh----hHHHHHHHHHHHHHHHHH
Confidence 356788877777777777788888 999999999886533 332222211 2222 113556679999999999
Q ss_pred HcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
+.+.|+.....+...+-+.. .+.|. +|.-..+.+.-+.+..++...|++..+.+.++..+
T Consensus 124 ~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~~~lg~~il~gl~i~i~~~i~G~~ 184 (387)
T TIGR00529 124 EERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALSGIHPGKVSLTLFPVFAIAFFLGWF 184 (387)
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777775 77888 45545555656789999999999999988665443
No 119
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=97.17 E-value=0.014 Score=61.12 Aligned_cols=130 Identities=22% Similarity=0.226 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEA--APYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKT 457 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~--~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~ 457 (534)
+.--++-+.++-+-.+|+.+++||..|.+++.+.+..+ ..++.+. +..++. -+.-|.+ ....++.|+..+++++
T Consensus 56 ~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~~A~~-i~g~iv-~IPvF~d--v~~viL~Pl~~~la~~ 131 (441)
T PF02447_consen 56 STLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAPLALA-ITGFIV-GIPVFFD--VGFVILAPLAFSLARK 131 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccHHHH-HHHHHh-hhHHHHH--HHHHHHHHHHHHHHHH
Confidence 44445567777788889999999999999999875433 2344333 222222 2223433 4568999999999999
Q ss_pred cCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
.|.+...+.+++..+...+ .+.|++-.| ..+.+.=+.+..+++-+|+...+...++
T Consensus 132 ~~~s~~~~~~~l~~gl~~~h~lvPPtPgp-la~a~~lg~dlG~~il~Gl~vaip~~~i 188 (441)
T PF02447_consen 132 TGKSLLYLALPLAAGLSVTHALVPPTPGP-LAAAGALGADLGLVILYGLIVAIPAMLI 188 (441)
T ss_pred hCCCHHHHHHHHHHHHHHhhhccCCCCcH-HHHHHHhCCChhHHHHHhHHHHHHHHHH
Confidence 9999999888877776664 677884333 3333444689999999999988876655
No 120
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=97.12 E-value=0.053 Score=57.92 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLP 196 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g 196 (534)
.++.+++....++..+++.|..+++...+.+... +.+.+....++.+.+.+... +|..+..++.|++.+++++.+
T Consensus 324 ~~i~ilila~siggi~~~~G~~~~l~~~~~~~i~----s~~~l~~~~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~ 399 (485)
T COG1757 324 GAILILILAWSIGGILEDLGTLEYLLSLLQKFIK----SKGSLPLIIFLLAILVAFATGTSWGSIIIMGPIAKEIADKLG 399 (485)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCC----CcchhHHHHHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhC
Confidence 5778888899999999999999999999887754 34467777777777777776 777788999999999999998
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q 035612 197 EVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVI 267 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~ 267 (534)
.++. .+.-.+-.++..+.-+.|.++..-.... .+ +...+..+++.|++...+..
T Consensus 400 ~~~~----------~l~~~l~~gg~~~~~~~Pws~~~i~~s~-~~------~~~v~~~t~lPya~~~~~~~ 453 (485)
T COG1757 400 LHSK----------RLSRALEAGGTFGDHLSPWSDTTILSST-GL------GCIVHVTTQLPYAFYAALLI 453 (485)
T ss_pred ccHH----------HHHHHHHhcCeecCCCCCcchhHHHHHh-cc------CCCchhHhhHHHHHHHHHHH
Confidence 7762 1223444456666777788654422222 11 11467778888877766443
No 121
>PRK09821 putative transporter; Provisional
Probab=97.01 E-value=0.047 Score=57.41 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=89.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhcccc--HHHHHHHHHHHHHHHH--HhchHHHHHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAP--YLAIAPIVCLISAIIT--EFTSNNATTTLVLPLLIQI 454 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~--~~~~~~~~~~~~~~lt--~f~Sn~a~~~il~Pi~~~l 454 (534)
.+.--+..++++.+-.+|..+++||..|.+++.+.+.-+.. ++.+. +.+.+++ -|. ..+..++.|+..++
T Consensus 59 g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~~ai~----i~~~ilgIpvF~--dv~fvil~Pl~~~l 132 (454)
T PRK09821 59 GGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDKRTIAALT----LAAFILGIPVFF--DVGFIILAPIIYGF 132 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchHHHHH----HHHHHHhhHHHH--HHHHHHHHHHHHHH
Confidence 34555566777778888999999999999999987653322 23322 2222222 232 35556899999999
Q ss_pred HHHcCCChHHHHHHHHHHHh-hhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHH
Q 035612 455 AKTMHVHPLLLMVPGAIGAQ-FSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLM 519 (534)
Q Consensus 455 a~~~g~~p~~~~l~~~~~~~-~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~~~ 519 (534)
+++.+.++..+.++.+.+.+ ...+.|.+-.|... .+.=+.+.....-+|+...+...++..++.
T Consensus 133 ~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~-a~~Lg~d~g~~~l~Giivaip~~i~g~~~~ 197 (454)
T PRK09821 133 AKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAA-AGLLHADIGWLTIIGIAISIPVGIVGYFAA 197 (454)
T ss_pred HHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777653333 23455654444333 354467899999999998888766544433
No 122
>PRK10472 low affinity gluconate transporter; Provisional
Probab=96.87 E-value=0.046 Score=57.31 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHH
Q 035612 385 IILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLL 464 (534)
Q Consensus 385 ~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~ 464 (534)
+...++-+..+|+.+++||..+.+++.+.+.-+...... .+.+...+++--.=-.....++.|+...++++.|.|...
T Consensus 65 i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~kr~~~--A~~l~g~iv~iPvF~dv~fvil~Pl~~~la~~~~~s~~~ 142 (445)
T PRK10472 65 LAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAHY--AIGLAGLICALPLFFEVAIVLLISVAFSMARHTGTNLVK 142 (445)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcccHHH--HHHHHHHHHhhHHHHhhHHHHhHHHHHHHHHHHCCChHH
Confidence 345666677789999999999999999986533222111 112222222211223445678999999999999999999
Q ss_pred HHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 465 LMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 465 ~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
+.+++..+.+.. .+.|++-.| ..+.+.=+.+..+++-+|+...+...++
T Consensus 143 ~~~~l~~gl~~~H~~vPP~Pgp-~a~a~~l~adlG~~il~Glivaip~~~i 192 (445)
T PRK10472 143 LVIPLFAGVAAAAAFLLPGPAP-MLLASQMNADFGWMILIGLCAAIPGMII 192 (445)
T ss_pred HHHHHHHHHHhcccccCCCcHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 988887775554 778885333 3333444778999999999888877554
No 123
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=96.86 E-value=0.51 Score=48.05 Aligned_cols=103 Identities=22% Similarity=0.184 Sum_probs=61.3
Q ss_pred HHHHHhCHHH-HHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHH-
Q 035612 397 DGVRTSGLAD-DLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHP-LLLMVPGAIGA- 473 (534)
Q Consensus 397 ~~l~~sG~~~-~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p-~~~~l~~~~~~- 473 (534)
+..-.-|+.+ |+...+.+++ +. .++.-+..+|.|.+|.+..-+- ++- -|.+. .-+++. .++
T Consensus 323 GLVvlGglQ~WWlqpll~~m~---~~----~lf~ga~~LTa~tDNAalTYLg-----slv--~g~sd~~kYalV--AGAV 386 (438)
T PF07399_consen 323 GLVVLGGLQQWWLQPLLSGMS---PL----ALFFGATALTAFTDNAALTYLG-----SLV--PGLSDAFKYALV--AGAV 386 (438)
T ss_pred hHHHcCchHHHHHHHHHhcCC---hh----HHHHHHHHHHHHhhhHHHHHHH-----Hhc--cCCCHHHHHHHH--hhee
Confidence 3333445666 4455554443 32 2335566778899998766432 111 12332 223222 233
Q ss_pred hhhcccCCCCchhhHhhc-------CCCCCHHHHHHHhHHHHHHHHHHH
Q 035612 474 QFSFLLPTGTPSNIVGFT-------TGHIEIQDMIKTGLPLKIAGIAAM 515 (534)
Q Consensus 474 ~~~~~~P~~~~~n~i~~~-------~g~~~~~~~~k~g~~~~ii~~ii~ 515 (534)
+.|-+|-++++||...+. .+.++....+...++.+++...+-
T Consensus 387 tGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~~L~l~AL~PT~ia~~~F 435 (438)
T PF07399_consen 387 TGGGLTVIANAPNPAGQAILRKHFPDGSISPLGLFLAALPPTLIAALAF 435 (438)
T ss_pred ccCceeEeccCCChhhHHHHhccCCCCCcChHHHHHHHHhHHHHHHHHH
Confidence 335799999999987764 246899999999898888766543
No 124
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=96.74 E-value=0.17 Score=52.05 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhh
Q 035612 131 LAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYC 209 (534)
Q Consensus 131 ~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~ 209 (534)
+.++.|++...+|-+=.+....-......+++++.+.++++..++ |..|-=+++.||.+++.-.+|++|+-.|
T Consensus 365 a~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASAkWailaPIfVPMlMllGysPe~tQ------ 438 (516)
T COG2978 365 AFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFTQ------ 438 (516)
T ss_pred HHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHHH------
Confidence 678899999988765444332221233457788999999999998 8888889999999999999999985211
Q ss_pred hHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035612 210 KAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 210 ~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
.+-=.+-+.....||.- +--.++..+.+++ ..+...+..+...+|..+...+...+.+
T Consensus 439 ----aayRigDS~tniiTPlm-~yfpLil~~~~kY---~k~~GvGTL~s~mLPYsi~f~i~w~~l~ 496 (516)
T COG2978 439 ----AAYRIGDSVTNIITPLM-PYFPLILAYAQKY---DKDAGVGTLMSMMLPYSIAFLIAWTLLL 496 (516)
T ss_pred ----HHHHhcccccccccchh-hhHHHHHHHHHHh---CcCccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11112333333444442 2234666677766 5678888889999998887665543333
No 125
>COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism]
Probab=96.68 E-value=0.19 Score=50.85 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHH
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF--TSNNATTTLVLPLLIQIAKT 457 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f--~Sn~a~~~il~Pi~~~la~~ 457 (534)
+-.|+++.=+-.--.+...++++|+..-+++.+......-.+. +++++..-+.++ -|...-=++=.|++.+.++.
T Consensus 307 ~s~aGillQFPfYagI~gim~~~~La~~Is~ffv~Va~~~t~p---~fafl~sg~vN~fvPSGGgew~ieap~v~~a~~~ 383 (446)
T COG2031 307 RSTAGILLQFPFYAGIMGMMVSTGLAQVISEFFVSIANEDTWP---VFAFLSSGLVNIFVPSGGGEWAIEAPIVSPAAQE 383 (446)
T ss_pred ccceEEEEecccHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH---HHHHHHhhHhheeccCCCceEEEEeeecchhhHH
Confidence 4455555433333334466788899999999988765433332 223333333333 34444456778999999999
Q ss_pred cCCChHHHHHHHHHHHhhhccc-CCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFSFLL-PTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAF 517 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~~~~-P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~~ 517 (534)
+|.||--..++...+....++. |+=. .-..+.++.+.+|..-+.++..++..++.+.
T Consensus 384 Lg~~~gk~~~A~~~gdawtNlIqPFwA---LP~L~i~Gl~ardI~Gy~~~~Liv~~vv~~i 441 (446)
T COG2031 384 LGVDLGKKAMAYAWGDAWTNLIQPFWA---LPALGIAGLKARDIMGYTFLFLLVVGVVIAI 441 (446)
T ss_pred hCCCHHHHHHHHHHHHHHhhhhhHHHH---HHHHHhcCcchhhhcceeHHHHHHHHHHHHh
Confidence 9999988888877777665443 2211 1223567899999999888877766655543
No 126
>PRK09921 permease DsdX; Provisional
Probab=96.59 E-value=0.079 Score=55.87 Aligned_cols=126 Identities=22% Similarity=0.285 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHH
Q 035612 385 IILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLL 464 (534)
Q Consensus 385 ~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~g~~p~~ 464 (534)
+...++.+..+|+.+++||..+.+++.+.+...........++.+++. ++-|. .....++.|++.+++++.+.++..
T Consensus 66 i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~~~~~~a~~~~gll~~-IpvF~--~~~~vil~Pl~~~lak~~~~s~~~ 142 (445)
T PRK09921 66 LAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGLICG-ITLFV--EVGVVLLIPLAFSIAKKTNTSLLK 142 (445)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhHHHHHHHHHHHHc-ccHHH--HhHHHHHHHHHHHHHHHhCCCHHH
Confidence 345666777788999999999999999865532222212212222222 22222 223458899999999999999888
Q ss_pred HHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 465 LMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 465 ~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
..++.+.+.... .+.|. +|.-..+.+.-+.+..++...|++..+...++
T Consensus 143 ~~~~~~~~~~~~h~~vPp-~Pg~~~~a~~lg~~lg~~~l~Gl~~~i~~~~i 192 (445)
T PRK09921 143 LAIPLCTALMAVHCVVPP-HPAALFVANKLGADIGSVIVYGLLVGLMASLV 192 (445)
T ss_pred HHHHHHHHHHHhHhcCCC-CcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 777766665553 56676 45545555555789999999999999776554
No 127
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.58 E-value=0.2 Score=49.46 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=107.5
Q ss_pred ccCChHHHHh------hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhh
Q 035612 104 GISSADTVAH------SYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHN 177 (534)
Q Consensus 104 gi~~~~~v~~------~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn 177 (534)
|-.+++.+.+ ...+-+.++++|+-..+....-.|-++++-+++.+.-| ++...+.......+++..|++-
T Consensus 276 ~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpg----g~igFli~~~~~iF~Lgffldf 351 (447)
T COG4664 276 GRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPG----GEIGFLIVSNILIFFLGFFLDF 351 (447)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCC----CceeeehHHHHHHHHHHHHHHH
Confidence 4455544433 23446888899999999999999999999998887755 3555666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhc-cccccccchhHHHHHHHHhhhCCCCCCcchHHH
Q 035612 178 VAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVG-GMSTLTGTGVNLILVGMWKTYFPEANPISFSTW 256 (534)
Q Consensus 178 ~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~ig-g~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~ 256 (534)
.-.+.+..|+..++++++|.|. ...++..+.|.- ++++ |+--...=++.... -.+++-.|-
T Consensus 352 fEiafIivPllaPva~~lgIDl------------iwfGVll~~NlQtSFl~----PPfgfslfYLrgVA--p~~VTt~qI 413 (447)
T COG4664 352 FEIAFIIVPLLAPVADKLGIDL------------IWFGVLLGVNLQTSFLH----PPFGFSLFYLRGVA--PPSVTTGQI 413 (447)
T ss_pred HHHHHHHHHhhHHHHHHcCCcH------------HHHHHHHHHhhhhhccC----CCchhhHHHhccCC--CCCcchhhh
Confidence 9999999999999999999986 677888888863 3343 33223333444332 347888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 035612 257 FCFGFPLALVIFVALW 272 (534)
Q Consensus 257 ~~~~~p~~li~~~~~~ 272 (534)
..-+.|..++-+++..
T Consensus 414 y~G~vPfiliqvl~~~ 429 (447)
T COG4664 414 YRGAVPFILIQVLVVI 429 (447)
T ss_pred hhccccHHHHHHHHHH
Confidence 8888888776655543
No 128
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=96.57 E-value=0.16 Score=49.31 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=87.4
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHhchHHHHH--HHHHHHHHHH
Q 035612 378 CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATT--TLVLPLLIQI 454 (534)
Q Consensus 378 ~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~--~il~Pi~~~l 454 (534)
.+.+.|..+. ==-.-++|..+++.|..|.+++..+.. ...+.+...++-|+=..+.|..+-|.=++ .+..-|-.|+
T Consensus 157 l~~vG~a~iL-PQlLAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiPf 235 (308)
T PF06166_consen 157 LDQVGWAAIL-PQLLAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIPF 235 (308)
T ss_pred HHHhhHHHHH-HHHHHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCceE
Confidence 3688897764 111335788899999999999998853 33343333334445455556666554332 1222222222
Q ss_pred HH-HcCCChHHHHHHHHHHHhh-h-cccCCCCchhhHhhcC-CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 455 AK-TMHVHPLLLMVPGAIGAQF-S-FLLPTGTPSNIVGFTT-GHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 455 a~-~~g~~p~~~~l~~~~~~~~-~-~~~P~~~~~n~i~~~~-g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
-- +.|.||....-. .+.+++ | -+||.+.--|.+=... +--+-...+|.=.|..++.+++-.+.+|++.
T Consensus 236 vi~~~GgnPaivgAl-gM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I~LMy~la 307 (308)
T PF06166_consen 236 VIAQFGGNPAIVGAL-GMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNIVLMYFLA 307 (308)
T ss_pred EEecCCCCHHHHHHH-HHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHHHHHHHHh
Confidence 22 348899765433 333433 4 8999988777665442 1112334678888999988888888888874
No 129
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=96.48 E-value=0.12 Score=47.74 Aligned_cols=174 Identities=14% Similarity=0.071 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCChHHHHhhhcc-----hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 035612 95 APLFLFPLFGISSADTVAHSYMD-----DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTA 169 (534)
Q Consensus 95 ~~~~l~~l~gi~~~~~v~~~~~~-----~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~ 169 (534)
.+.+.-.+.+-+++.++.+.++. ..+-+++-.+-+-..+|+.|+-+|-...+-+.-+. +..+++...+++=-
T Consensus 26 vAgivTgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~a---T~Gril~~Yl~iR~ 102 (218)
T PF06149_consen 26 VAGIVTGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGA---TAGRILSVYLLIRE 102 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Confidence 33344445566788777664433 34444444577778999999999988766555333 35556555555433
Q ss_pred HHHHhh----hhHHHH--HHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhh
Q 035612 170 FVSMWM----HNVAAA--VIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKT 243 (534)
Q Consensus 170 ~lS~~i----sn~a~~--~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~ 243 (534)
+.+++- +..+-. =+..|.+.+.+++-.-+- +++++.+. |...-+.=--.|.-|--..++.+.-+++.+.+++
T Consensus 103 i~aa~gl~~lGGh~QfVRPLi~PMaeaAae~~~g~l-~e~~~e~i-ka~aAA~eN~gnFFgqniFva~~gvLLi~gtl~~ 180 (218)
T PF06149_consen 103 IAAAFGLTRLGGHAQFVRPLIAPMAEAAAEAKYGEL-SEKDREKI-KAMAAAAENYGNFFGQNIFVAAGGVLLIQGTLKE 180 (218)
T ss_pred HHHHhCCcccCCCCccccchhhhHHHHHHhhccCCC-CHhHHHHH-HHHHHHHHHHHHHHhHHHHHhccceeeeeeeHHh
Confidence 333321 111111 244555555555421111 11122222 2221111111122222334555566677778887
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 244 YFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 244 ~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
. +.+++-.+-..+++|.+++.+++.....+
T Consensus 181 ~---G~~v~~~~ia~~~IP~Ai~a~ii~~~~~~ 210 (218)
T PF06149_consen 181 L---GYEVEPLHIALWAIPTAIIAFIIHGIRLY 210 (218)
T ss_pred c---CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 67899999999999999998888765443
No 130
>COG2056 Predicted permease [General function prediction only]
Probab=96.44 E-value=0.23 Score=49.52 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHhccCChHHHHhhhcchH------HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHH
Q 035612 90 PITSMAPLFLFPLFGISSADTVAHSYMDDV------IALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLG 163 (534)
Q Consensus 90 ~~~al~~~~l~~l~gi~~~~~v~~~~~~~~------i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~ 163 (534)
...++.+..++.++|+.+++|.-+-|.... -+.++..--.+..+++||-.+.+.+.....+|++ ...-.+.
T Consensus 265 ilgal~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~LV~s~~~~~g~s---K~l~a~l 341 (444)
T COG2056 265 ILGALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEELVESSSSIIGQS---KLLAALL 341 (444)
T ss_pred hHHHHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHHHHHHHHHHhccc---HHHHHHH
Confidence 345666777788899999888755554432 2223333345688999999999999999999763 2222233
Q ss_pred HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccch
Q 035612 164 ICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTG 232 (534)
Q Consensus 164 ~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~ 232 (534)
+.++..+++|=+ |...+.=+...+-.++|.++|.+| .....-+..++.+|-.++|-+++
T Consensus 342 MlvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFSp----------~ati~liG~AaALGDAGSPASDS 401 (444)
T COG2056 342 MLVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFSP----------LATIALIGTAAALGDAGSPASDS 401 (444)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHhHHHHhCCCH----------HHHHHHHHHHHHhcCCCCCcccC
Confidence 344455666666 666666677777778899999988 34555566677777777665544
No 131
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=96.42 E-value=0.18 Score=52.80 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh-cccc-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAP-YLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKT 457 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l-~~~~-~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~ 457 (534)
+.--+.-+.++.+-.+|+.+++||..+.+++.+.+. +..+ .+.+. +...+.. +.-| -...-.++.|+...++++
T Consensus 56 ~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~~a~~-l~~~il~-ipvF--~dv~fvil~Pi~~~lak~ 131 (438)
T PRK14984 56 GTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV-LTGFTVG-FALF--YEVGFVLMLPLVFTIAAS 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccchHHHHH-HHHHHHh-hHHH--HHHHHHHHHHHHHHHHHH
Confidence 344445566677777889999999999999998754 3333 33322 2222221 2223 223345899999999999
Q ss_pred cCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHH
Q 035612 458 MHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 458 ~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii 514 (534)
.|.+..++..++..+.+.. .+.|.+-.| ..+.+.=+.+..+++-+|+...+...++
T Consensus 132 ~~~~~~~~~~~l~~gl~~th~~vPP~Pgp-la~a~~lgadlG~~il~Glivaip~~~i 188 (438)
T PRK14984 132 ANIPLLYVGVPMAAALSVTHGFLPPHPGP-TAIATIFNADMGKTLLYGTILAIPTVIL 188 (438)
T ss_pred hCcChHHHHHHHHHHHHHHHhCCCCCCcH-HHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 9999988888776665554 456775334 3333444788999999999988877543
No 132
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=96.41 E-value=0.27 Score=51.01 Aligned_cols=133 Identities=9% Similarity=-0.022 Sum_probs=86.0
Q ss_pred cCChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHH-----HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Q 035612 105 ISSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHK-----RLALNITILFCGEPMNPPLLLLGICGTTAFVSM 173 (534)
Q Consensus 105 i~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~-----ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~ 173 (534)
..+++|..+.+.+ ..++.+.-.--+...++++|+.+ .+++.+.+... ........++...++..
T Consensus 291 ~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a~-----~~~f~l~~~l~~~liNf 365 (438)
T TIGR00366 291 HKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVAN-----KDTFPLMTFFSAGLINI 365 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhCC-----ccHHHHHHHHHHHHHHh
Confidence 4566666555443 33444444444557778998888 88877755432 22333455578889999
Q ss_pred hh-hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcc
Q 035612 174 WM-HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPIS 252 (534)
Q Consensus 174 ~i-sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is 252 (534)
|+ |..+-.++..|++.++++.+|.+++ ...++..++-....+.+|+-.-|-+-+ .++.
T Consensus 366 FIPSGsGqwai~aPImvP~a~~LGvs~~----------~tv~Ay~~GD~~tNlI~PfWaLP~L~i-----------~gL~ 424 (438)
T TIGR00366 366 FIPSGGGHWAIQGPIVIPAAQALGVDLG----------KSVMAIAYGDAWTNMAQPFWALPALGI-----------AGLG 424 (438)
T ss_pred cccCchHHHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHHhHhHHHhhHHHHHHHHHH-----------cCCc
Confidence 98 8889999999999999999999873 245566666665555555533332222 2566
Q ss_pred hHHHHHHHHHH
Q 035612 253 FSTWFCFGFPL 263 (534)
Q Consensus 253 ~~~~~~~~~p~ 263 (534)
..|-+-|++..
T Consensus 425 arDImGy~~~~ 435 (438)
T TIGR00366 425 ARDIMGYCITA 435 (438)
T ss_pred HHHHhhHHHHH
Confidence 66666665543
No 133
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=95.37 E-value=1.3 Score=47.63 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=91.8
Q ss_pred HhccCChHHHHhhhc------chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh
Q 035612 102 LFGISSADTVAHSYM------DDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 175 (534)
Q Consensus 102 l~gi~~~~~v~~~~~------~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i 175 (534)
+.+ .+.+|..+.+. ....+-+...+.++..|..||...-+++.+.+ .|. .+.+. .-.-..+..|+
T Consensus 366 ~~~-~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~----~yp~~---aP~lG~lG~Fi 436 (522)
T PF02652_consen 366 LLR-MSPSQVREALKKTLKQLWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGA----AYPFF---APFLGWLGSFI 436 (522)
T ss_pred HHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCc----cHHHH---HHHHHHHhccc
Confidence 344 45555544332 26778888899999999999999999998887 663 22211 11224445555
Q ss_pred --hhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcch
Q 035612 176 --HNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISF 253 (534)
Q Consensus 176 --sn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~ 253 (534)
|||+.-+++.++=...++++|.||. .+..+..+. |+.+.++ +|+|+.+..-.-... ++ =
T Consensus 437 TGS~T~SN~lF~~lQ~~~A~~lgl~~~------------l~~Aaq~~G-g~~g~mI-sp~~i~~a~a~~g~~--g~---E 497 (522)
T PF02652_consen 437 TGSNTSSNALFGPLQVTTAQQLGLPPL------------LIAAAQNVG-GAMGNMI-SPQNIVAAAAAVGLS--GK---E 497 (522)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCHH------------HHHHHHHHH-HHHHhcc-CHHHHHHHHHHhcCC--Cc---H
Confidence 9999999999999999999999871 222222221 3344444 578887765444332 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035612 254 STWFCFGFPLALVIFVALW 272 (534)
Q Consensus 254 ~~~~~~~~p~~li~~~~~~ 272 (534)
++-++..+|+++...++.-
T Consensus 498 g~ilr~t~~~~l~~~~i~g 516 (522)
T PF02652_consen 498 GEILRKTLPPSLIYALIVG 516 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667778888776655443
No 134
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=95.17 E-value=1.8 Score=42.35 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHH-HhCCCCCcchh
Q 035612 127 FILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAA--VIMMPVATGIL-QNLPEVPLQST 203 (534)
Q Consensus 127 ~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~--~i~~Pi~~~i~-~~~g~~~~~~~ 203 (534)
-.++..+.+.|..|.+++.+-..+-.. +...-....++-.+++++.+.|-=++ .+-.-|..++. ++.|-||.
T Consensus 171 AaLG~vF~~AGVG~vIa~lv~~viP~g--~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiPfvi~~~GgnPa--- 245 (308)
T PF06166_consen 171 AALGAVFTAAGVGDVIASLVSSVIPEG--NRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIPFVIAQFGGNPA--- 245 (308)
T ss_pred HHHHHHHHhcCccHHHHHHHHhhcCCC--CeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCceEEEecCCCCHH---
Confidence 457789999999999999887776432 33344456666677778888554322 22223333333 44477772
Q ss_pred hhhhhhhHHHHHHHHHh-hhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 204 LVRKYCKAVVLGVIYSA-AVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCL 277 (534)
Q Consensus 204 ~~~~~~~~l~l~i~~aa-~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~ 277 (534)
..-++...| -.|..+||....-|++=...+|-. ++.. -.+.-.|.++.++++-..++++
T Consensus 246 --------ivgAlgM~aGyCGTLmTPMAANFNiVPaALLElk----Dk~g---VIKaQ~p~Al~llvv~I~LMy~ 305 (308)
T PF06166_consen 246 --------IVGALGMTAGYCGTLMTPMAANFNIVPAALLELK----DKYG---VIKAQAPTALVLLVVNIVLMYF 305 (308)
T ss_pred --------HHHHHHHhhcchhcccChhhhhcCcchHHHhcCC----cccc---chhhhhHHHHHHHHHHHHHHHH
Confidence 333333333 335668888888899888887732 1211 2455678887777666555443
No 135
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=95.05 E-value=4.2 Score=42.04 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHH---H-hhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 035612 73 GVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTV---A-HSYMDDVIALVLGSFILALAVEHYNIHKRLALNITI 148 (534)
Q Consensus 73 ~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v---~-~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~ 148 (534)
.-++.++.+-+.-++|.....+.......+.+..+.+|. + +.+.+..++.+++.++.-..++.||..|.++..+.+
T Consensus 206 ~Pil~~i~l~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~ 285 (385)
T PF04165_consen 206 WPILVIILLSVLFKLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSS 285 (385)
T ss_pred hHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHh
Confidence 334444444444466665544444344444455555543 3 356778999999999999999999999999987764
Q ss_pred HhcCCCCChhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccc
Q 035612 149 LFCGEPMNPPLLLLGICGTTAFVSMWMH-NVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMST 227 (534)
Q Consensus 149 ~~g~~~~~~~~l~~~~~~~~~~lS~~is-n~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t 227 (534)
. | -|. .+.+.++.++.+...+ +.+-+++-.|++.+.... . -...+++.+...|++
T Consensus 286 ~-~----ip~--~li~~lipFivG~~TGi~~a~vgi~fPll~~l~~~----~------------~~~~la~~~g~~Gvm- 341 (385)
T PF04165_consen 286 L-G----IPP--FLIIALIPFIVGLITGITQAFVGIAFPLLAPLIGG----L------------PYLVLAYASGFAGVM- 341 (385)
T ss_pred C-C----CcH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc----c------------hHHHHHHHHHHHHHh-
Confidence 2 2 222 2334444444444443 556679999998888643 1 113455555444443
Q ss_pred cccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 035612 228 LTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWA 273 (534)
Q Consensus 228 ~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~ 273 (534)
-+|.++ ..-+-.| +.+.++.+-.+.-+++.++......+
T Consensus 342 --lSP~Hl-CLvlT~e----YFk~~~~~v~k~l~~p~~i~~~~~~~ 380 (385)
T PF04165_consen 342 --LSPVHL-CLVLTAE----YFKADLGKVYKKLLPPALIFLAAGLL 380 (385)
T ss_pred --hchHHH-HHHHHHH----HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 134433 1112233 34678888888888777665555433
No 136
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=94.55 E-value=0.27 Score=50.01 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=90.4
Q ss_pred HHHHhhhcchHHH--HHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 035612 109 DTVAHSYMDDVIA--LVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMP 186 (534)
Q Consensus 109 ~~v~~~~~~~~i~--li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~P 186 (534)
.++.+.|-++..+ -++-+|.++..+.--|+=+|--+-+++.. ++ ..++..+..++.+.+|-+.+-+-.
T Consensus 299 ~~ay~~yQ~~l~Lre~lLVgFFLaGLVvlGglQ~WWlqpll~~m-----~~----~~lf~ga~~LTa~tDNAalTYLgs- 368 (438)
T PF07399_consen 299 TQAYKRYQSPLILREALLVGFFLAGLVVLGGLQQWWLQPLLSGM-----SP----LALFFGATALTAFTDNAALTYLGS- 368 (438)
T ss_pred HHHHHhhccchhhhHHHHHHHHHhhHHHcCchHHHHHHHHHhcC-----Ch----hHHHHHHHHHHHHhhhHHHHHHHH-
Confidence 4555555554332 12335555666666666666555555432 22 356677888899999977654322
Q ss_pred HHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q 035612 187 VATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALV 266 (534)
Q Consensus 187 i~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li 266 (534)
.+ + |.++ ..-.++..++..||-.|.++|.||+.-.+.+.+.+ .++++|-...+..+++++++
T Consensus 369 lv----~--g~sd-----------~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr~~F-~d~~Is~~~L~l~AL~PT~i 430 (438)
T PF07399_consen 369 LV----P--GLSD-----------AFKYALVAGAVTGGGLTVIANAPNPAGQAILRKHF-PDGSISPLGLFLAALPPTLI 430 (438)
T ss_pred hc----c--CCCH-----------HHHHHHHhheeccCceeEeccCCChhhHHHHhccC-CCCCcChHHHHHHHHhHHHH
Confidence 21 1 1111 12245667788899999999999999999999887 35689999999999999998
Q ss_pred HHHHHH
Q 035612 267 IFVALW 272 (534)
Q Consensus 267 ~~~~~~ 272 (534)
.....+
T Consensus 431 a~~~F~ 436 (438)
T PF07399_consen 431 AALAFW 436 (438)
T ss_pred HHHHHH
Confidence 876654
No 137
>PRK10420 L-lactate permease; Provisional
Probab=94.38 E-value=3.4 Score=44.83 Aligned_cols=136 Identities=9% Similarity=0.101 Sum_probs=84.7
Q ss_pred CChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh--hh
Q 035612 106 SSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM--HN 177 (534)
Q Consensus 106 ~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i--sn 177 (534)
++.++..+.+.. .+.+.+...+.++..+..||...-++..+. ..|+ .+.+ +.-.-..+..|+ ||
T Consensus 389 ~~~~~~~~~~~~t~k~~~~~~iti~~~vala~vm~~SGm~~~la~~~A-~~G~----~yp~---~aP~lG~lG~FvTGS~ 460 (551)
T PRK10420 389 MKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALA-HTGH----AFTF---FSPFLGWLGVFLTGSD 460 (551)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HhCc----cHHH---HHHHHHhhhccccccc
Confidence 455555443322 677888889999999999999999999776 4663 2221 222233344455 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHH
Q 035612 178 VAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWF 257 (534)
Q Consensus 178 ~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~ 257 (534)
|..-+++.++=...++++|.++. .+..+..+. |+.+.++ +|+|+.+..-.-+.. +++ ++.+
T Consensus 461 TsSN~LF~~lQ~~tA~~lgl~~~------------li~Aaq~~G-g~~GkmI-spq~I~~a~a~vg~~--G~E---g~il 521 (551)
T PRK10420 461 TSSNALFAALQATAAQQIGVSDV------------LLVAANTTG-GVTGKMI-SPQSIAIACAAVGLV--GKE---SDLF 521 (551)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH------------HHHHHHHHh-hHHhhcc-CHHHHHHHHHHHccC--CcH---HHHH
Confidence 99999999999999999999871 122221111 3334444 588887665544432 222 4455
Q ss_pred HHHHHHHHHHH
Q 035612 258 CFGFPLALVIF 268 (534)
Q Consensus 258 ~~~~p~~li~~ 268 (534)
+..+++++...
T Consensus 522 r~t~~~~l~~~ 532 (551)
T PRK10420 522 RFTVKHSLIFT 532 (551)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 138
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=94.31 E-value=0.75 Score=46.51 Aligned_cols=176 Identities=13% Similarity=0.162 Sum_probs=112.7
Q ss_pred cCChhhHHHHHHH---HH-HHhccCChHHHHhhhcc--hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhH
Q 035612 86 AVPMPITSMAPLF---LF-PLFGISSADTVAHSYMD--DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPL 159 (534)
Q Consensus 86 ~ip~~~~al~~~~---l~-~l~gi~~~~~v~~~~~~--~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~ 159 (534)
+.+.+-+.+++.. +. .++|+.+-.+.-+.|.. +..-++.-.|.+.+.+.+..+.+.+..+++..-+++
T Consensus 317 A~HlA~VGlIGLsVIil~Taf~Git~EH~iGkAFeEaLPFTALL~VFF~vVaVI~dQ~LF~PiI~~VL~~~~~~------ 390 (515)
T PF06450_consen 317 AFHLAEVGLIGLSVIILATAFCGITDEHAIGKAFEEALPFTALLVVFFAVVAVIIDQHLFTPIIQFVLSAEGSS------ 390 (515)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhHhHhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCcc------
Confidence 4555555555433 22 46777766555455544 445556667778888999999999999998765432
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHH-
Q 035612 160 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILV- 238 (534)
Q Consensus 160 l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~- 238 (534)
-...+++...++|+..+|+=+....+-=+..-.++-..++ +.+. .+..++-.+.|+.+.+||.|-..-+...
T Consensus 391 Ql~~fy~aNGlLS~iSDNVFV~TVYI~E~k~A~~~G~Is~------~qf~-~LAVAINTGTNlPSVATPNGQAAFLFLLT 463 (515)
T PF06450_consen 391 QLAMFYIANGLLSMISDNVFVATVYINEVKAALDAGVISR------EQFD-LLAVAINTGTNLPSVATPNGQAAFLFLLT 463 (515)
T ss_pred chhHHHHhhhhHHhhccceeEEEEeHhhHHHHHHcCCcCH------HHHh-hHHhhhhcCCCCCcCcCCCchhHHHHHHH
Confidence 2346788899999998887544333333333333322222 2222 2566777788999999998866544322
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 239 GMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLF 278 (534)
Q Consensus 239 ~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~ 278 (534)
+-++. -...||++....++|..++...+..+...+.
T Consensus 464 SalAP----LirLSYgrMV~MAlPYTiVl~~vGl~~v~~~ 499 (515)
T PF06450_consen 464 SALAP----LIRLSYGRMVWMALPYTIVLTLVGLLAVEFL 499 (515)
T ss_pred HhhHH----HHHHhHhhHHhHhccHHHHHHHHHHHHHHHh
Confidence 22222 3478999999999999998877776655443
No 139
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=94.27 E-value=0.033 Score=55.36 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=93.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHH
Q 035612 379 KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEFTSNNATT-TLVLPLLIQIAK 456 (534)
Q Consensus 379 ~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~-l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~-~il~Pi~~~la~ 456 (534)
.+.|+++++++.+..+-+.+++.+|-.|++-+.-.+ +..+|...-. +-=+++..+| +++.|..+ .-.+|+...+|.
T Consensus 44 ~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~-lAP~Vty~lT-~maGTGh~vySilPVI~eVA~ 121 (436)
T COG2704 44 GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITI-LAPFVTYTLT-ILAGTGHVVYSILPVIAEVAK 121 (436)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEE-ehhHHHHHHH-HhhcCCceeeeehhHHHHHHH
Confidence 478999999999999999999999999998877654 3344443211 1112222232 33444443 457899999999
Q ss_pred HcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhc--CCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFT--TGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~--~g~~~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
.-|+.|.--+-...+++..+ .-.|++...-.+..- .-+.+..+.+-..+|-++++..+..+....-+
T Consensus 122 ~~gIrPeRPls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll~v~IPaTl~g~~~~~l~~~~~g 191 (436)
T COG2704 122 KNGIRPERPLSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLLMVTIPSTLLGVLLMALFVWFRG 191 (436)
T ss_pred HcCCCCCCcchHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheeeeEEecHHHHHHHHHHHHHHHhc
Confidence 99998854444445677776 566775443333221 12344667777788888888777776665443
No 140
>COG3817 Predicted membrane protein [Function unknown]
Probab=94.15 E-value=0.68 Score=43.77 Aligned_cols=142 Identities=19% Similarity=0.267 Sum_probs=85.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHHHhchHHHH------HHHHHHH
Q 035612 378 CKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEA-APYLAIAPIVCLISAIITEFTSNNAT------TTLVLPL 450 (534)
Q Consensus 378 ~~~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~-~~~~~~~~~~~~~~~~lt~f~Sn~a~------~~il~Pi 450 (534)
.+.+.|..+.= =-.-++|..+...|..|.+++..+..-. .+...-+.+-|+-..++|..+-|.=+ +.+-+|+
T Consensus 161 ~d~v~wa~iLP-Q~LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIgvPi 239 (313)
T COG3817 161 MDQVSWAAILP-QMLAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIGVPI 239 (313)
T ss_pred HHHhhHHHHHH-HHHHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeecccccce
Confidence 36899987641 1123567888999999999999875432 23333333344444445555555322 2344554
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035612 451 LIQIAKTMHVHPLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHI-EIQDMIKTGLPLKIAGIAAMAFLMPTLG 523 (534)
Q Consensus 451 ~~~la~~~g~~p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~-~~~~~~k~g~~~~ii~~ii~~~~~~~~~ 523 (534)
+ -.++|.||...+-.-..+.-+| -+||.+.--|.+-...-++ +-...+|.-.|..++.+++-++.+|+..
T Consensus 240 l---v~q~ganPaV~~AigM~sGfCGTLlTPMAANFN~vPAALlel~DknaVIKaQ~ptalvlli~ni~LmyfLa 311 (313)
T COG3817 240 L---VGQLGANPAVAGAIGMLSGFCGTLLTPMAANFNIVPAALLELKDKNAVIKAQAPTALVLLIANIFLMYFLA 311 (313)
T ss_pred e---eeccCCChHHHHHHHHHhhhhhhccChhhhhcCcchHHHhCCccccceeeeccchhhHHHHHHHHHHHHHH
Confidence 3 3468889976543332333334 8899987777665443222 2334677778888888888788887764
No 141
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=94.12 E-value=0.59 Score=46.86 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhh-hhcc-ccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCC
Q 035612 385 IILLLGAGFAIADGVRTSGLADDLSKALD-FLEA-APYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVH 461 (534)
Q Consensus 385 ~i~l~~~~~~l~~~l~~sG~~~~ia~~l~-~l~~-~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~ 461 (534)
.-..+.....++..++++|..+.+.+.++ +++. .+|+.++.+.++++.+++.+ .|.+....+++--+.|.-..+|++
T Consensus 75 Lgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvlv~~Gvs 154 (451)
T COG3069 75 LGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVLVNLGVS 154 (451)
T ss_pred HHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHhccc
Confidence 33444444455699999999999999887 4543 45666666888888898877 677777766666666666778887
Q ss_pred hHHHHHHHHHHHhhh-cccCCCCchhhHhhcCCCCCHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035612 462 PLLLMVPGAIGAQFS-FLLPTGTPSNIVGFTTGHIEIQDM-IKTGLPLKIAGIAAMAFLMPTLGAYVFG 528 (534)
Q Consensus 462 p~~~~l~~~~~~~~~-~~~P~~~~~n~i~~~~g~~~~~~~-~k~g~~~~ii~~ii~~~~~~~~~~~~~~ 528 (534)
..... + .+++..+ .+.|. +.-..++.+..+++..|+ ++.-.|.++..++.....-++|-+ .||
T Consensus 155 r~aaa-A-i~Ast~~i~lsp~-s~~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI~~ai~hff~qr-~~D 219 (451)
T COG3069 155 RGAAA-A-ICASTAAIILSPT-SGDSVLAAQVSGMKIADFAFHYQLPVSIAAIIGMAIAHFFWQR-YLD 219 (451)
T ss_pred chhhH-H-HhhchHHheeCCC-CcchHHHHHhcCCceEeeeeccCcHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 54322 1 1333345 44455 444455556667776665 556777778777777777777755 443
No 142
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=93.92 E-value=3.5 Score=44.57 Aligned_cols=127 Identities=8% Similarity=0.023 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM--HNVAAAVIMMPVATGILQNL 195 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i--sn~a~~~i~~Pi~~~i~~~~ 195 (534)
.+.+.....+.++..++.+|..+-+|+.+.+ .|+ .+.+ +.-.-..+..|+ |||..-+++.++=...+++.
T Consensus 393 ~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~----~yp~---~aP~iG~lG~FiTGS~TsSN~LFg~lQ~~tA~~l 464 (530)
T TIGR00795 393 LPILTIGMVLAFANVSNYSGMSKTLALALAH-TGL----AFTF---FSPFLGWLGVFLTGSDTSSNLLFGSLQLLTAEQI 464 (530)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCC----chHH---HHHHHHhhhcccccchHHHHHHHHHHHHHHHHHc
Confidence 4566666777789999999999999999987 774 2221 222233444555 99999999999999999999
Q ss_pred CCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 035612 196 PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVAL 271 (534)
Q Consensus 196 g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~ 271 (534)
|.++. .+.-.-..++ +.+.++ +|+|+.+..-.-+.. + .=++.++..+++++...++.
T Consensus 465 Gl~~~----------li~A~q~~Gg---~~G~mI-sp~~I~~a~a~vg~~--G---~Eg~ilr~t~~~~l~~~i~~ 521 (530)
T TIGR00795 465 GLPET----------LLLAANTVGG---VMGKMI-SPQSIAIACAAVGLV--G---QESDLFRKTVKYSLIYAIIV 521 (530)
T ss_pred CCCHH----------HHHHHHHHhH---HHhhcc-CHHHHHHHHHHHccC--C---chhHHHHHHHHHHHHHHHHH
Confidence 99871 1111222233 334444 578887765544432 2 22556666677666655443
No 143
>PRK09695 glycolate transporter; Provisional
Probab=93.31 E-value=6.3 Score=42.90 Aligned_cols=124 Identities=9% Similarity=0.067 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM--HNVAAAVIMMPVATGILQNL 195 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i--sn~a~~~i~~Pi~~~i~~~~ 195 (534)
...+.+...+.++..++.+|...-+|+.+. ..|+ .+.+ +.=.-..+..|+ |||..-+++.++=...++++
T Consensus 415 ~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~----~yp~---~aP~iG~lG~FvTGS~TsSN~LF~~lQ~~tA~~l 486 (560)
T PRK09695 415 WPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGV----MFPF---FSPFLGWLGVFLTGSDTSSNALFGSLQSTTAQQI 486 (560)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCc----cHHH---HHHHHhhhhcccccccHHHHHHHHHHHHHHHHHc
Confidence 567778888899999999999999999885 4563 2221 222233444555 99999999999999999999
Q ss_pred CCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHH
Q 035612 196 PEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIF 268 (534)
Q Consensus 196 g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~ 268 (534)
|.++. .+..+..+. |+.+.++ +|+|+.+..-.-+.. +++ ++.++..+++++...
T Consensus 487 Gl~~~------------li~Aaq~~G-g~~GkmI-spq~I~~a~a~vgl~--G~E---g~ilr~t~~~~l~~~ 540 (560)
T PRK09695 487 NVSDT------------LLVAANTSG-GVTGKMI-SPQSIAVACAATGMV--GRE---SELFRYTVKHSLIFA 540 (560)
T ss_pred CCCHH------------HHHHHHHHh-hHHhhcc-CHHHHHHHHHHHccC--Cch---hHHHHHHHHHHHHHH
Confidence 99871 122221111 3334444 588887765554432 222 344555555554443
No 144
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=93.20 E-value=5.8 Score=42.05 Aligned_cols=144 Identities=11% Similarity=0.099 Sum_probs=88.2
Q ss_pred cCChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhH
Q 035612 105 ISSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNV 178 (534)
Q Consensus 105 i~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~ 178 (534)
-+++++..+.|.. ..++.+.....++..+..+|..+-+++.+... |.. ....--.+-.+..+++. |||
T Consensus 361 ~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~---fp~fSp~lGwiG~FltG--S~T 434 (522)
T COG1620 361 KIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEA---FPLFSPFLGWIGVFLTG--SNT 434 (522)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCC---chhHhHHHHHHhhhhcc--cch
Confidence 4666666555433 56777888999999999999999999987766 642 22111122222333322 999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHH
Q 035612 179 AAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFC 258 (534)
Q Consensus 179 a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~ 258 (534)
..-+++.|+=...+++.|.++. + .++.-+.-|.++-++ +++|..+..-..... +++ ++-++
T Consensus 435 ~sN~lFg~lQ~~~A~~iG~s~~-----------l--~~AantvGg~~gkMI-spqsIa~acaavg~~--gkE---g~l~r 495 (522)
T COG1620 435 SSNLLFGPLQQTTAEQIGLSPV-----------L--LVAANTVGGVMGKMI-SPQSIAAACAAVGLV--GKE---GDLLR 495 (522)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH-----------H--HHHHHhhhhhhcccc-CHHHHHHHHHHhccc--cch---hHHHH
Confidence 9889999999999999999872 1 111111112333344 588887776554443 211 34455
Q ss_pred HHHHHHHHHHHHHHH
Q 035612 259 FGFPLALVIFVALWA 273 (534)
Q Consensus 259 ~~~p~~li~~~~~~~ 273 (534)
+.+++++...+...+
T Consensus 496 ~tv~~sl~~~~~~~i 510 (522)
T COG1620 496 KTVKPSLIYLIIAGV 510 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555444433
No 145
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=92.57 E-value=0.21 Score=49.13 Aligned_cols=46 Identities=33% Similarity=0.567 Sum_probs=37.8
Q ss_pred hccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035612 222 VGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAIL 275 (534)
Q Consensus 222 igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~ 275 (534)
++|-+...||-||.+.+| .-+++..||.+.|+|.+++.+...+.++
T Consensus 299 iSGGMlIPGNIPNIIsAg--------kL~I~skEWar~gvPlGl~~m~~yfi~~ 344 (347)
T PF07854_consen 299 ISGGMLIPGNIPNIISAG--------KLKITSKEWARLGVPLGLVLMVVYFIIL 344 (347)
T ss_pred HcCCeecCCCcchhhccc--------cCccchHHHHHHcccHHHHHHHHHHHHh
Confidence 345566789999999884 6799999999999999999887766544
No 146
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=88.78 E-value=7.1 Score=30.96 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred cCChhhHHHHHHHHHHHhccCChHHHHhhhcc------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Q 035612 86 AVPMPITSMAPLFLFPLFGISSADTVAHSYMD------DVIALVLGSFILALAVEHYNIHKRLALNITILF 150 (534)
Q Consensus 86 ~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~------~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~ 150 (534)
+++.-..-+++...-.+.+-++.+|..+.|.+ ++-+-.+..=.++.++.|||+.+.+++++.++.
T Consensus 17 R~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~~ 87 (88)
T PF13726_consen 17 RVNVVLALLIAALVGGLVGGLGLGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIKKL 87 (88)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc
Confidence 35544444555555566777787777665543 444444445556789999999999999998764
No 147
>COG4756 Predicted cation transporter [General function prediction only]
Probab=87.60 E-value=0.44 Score=45.14 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=37.3
Q ss_pred hccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 222 VGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 222 igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
++|-++..|+-+|++++| .-.+++.+|.+.|.|.++..+.....++.
T Consensus 311 IsGGmlIPGNiPNIV~AG--------rLrItm~EWar~gvP~Gia~~~a~fi~i~ 357 (367)
T COG4756 311 ISGGMLIPGNIPNIVMAG--------RLRITMKEWARLGVPVGIAVFIAIFIYIL 357 (367)
T ss_pred HcCCeecCCCCcceeeee--------eEEeehhhHHHhcccHHHHHHHHHHhhee
Confidence 345566889999999884 66899999999999999987766554443
No 148
>COG3817 Predicted membrane protein [Function unknown]
Probab=87.13 E-value=21 Score=34.14 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=70.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCCCChhH-HHHHHHHHHHHHHHhhhhH-H-----HHHHHHHHHHHHHHhCCCCCc
Q 035612 128 ILALAVEHYNIHKRLALNITILFCGEPMNPPL-LLLGICGTTAFVSMWMHNV-A-----AAVIMMPVATGILQNLPEVPL 200 (534)
Q Consensus 128 ~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~-l~~~~~~~~~~lS~~isn~-a-----~~~i~~Pi~~~i~~~~g~~~~ 200 (534)
.++..+..+|..|.++..+....... .|. -....++..+++++.+.|- | ++.+-.|+ +.-++|.||
T Consensus 176 aLG~vFa~aGvG~~ia~L~~~~i~~D---srfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIgvPi---lv~q~ganP- 248 (313)
T COG3817 176 ALGAVFASAGVGDVIAHLISEIIPAD---SRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIGVPI---LVGQLGANP- 248 (313)
T ss_pred HHHHHHHhcchhHHHHHHHHHHcccc---hhHHHHHHHHHHHHHHHHHHcccchhceeeecccccce---eeeccCCCh-
Confidence 46788899999999999887776532 232 2234555566667777553 2 22333444 345677777
Q ss_pred chhhhhhhhhHHHHHHHHHh-hhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035612 201 QSTLVRKYCKAVVLGVIYSA-AVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILC 276 (534)
Q Consensus 201 ~~~~~~~~~~~l~l~i~~aa-~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~ 276 (534)
..+-++..-+ -.|..+||....-|.+-...++-. ..+ .-.+.-.|.+++.++.-.+.++
T Consensus 249 ----------aV~~AigM~sGfCGTLlTPMAANFN~vPAALlel~---Dkn----aVIKaQ~ptalvlli~ni~Lmy 308 (313)
T COG3817 249 ----------AVAGAIGMLSGFCGTLLTPMAANFNIVPAALLELK---DKN----AVIKAQAPTALVLLIANIFLMY 308 (313)
T ss_pred ----------HHHHHHHHHhhhhhhccChhhhhcCcchHHHhCCc---ccc----ceeeeccchhhHHHHHHHHHHH
Confidence 2333333333 235567888777788877766521 111 1123345666665555444443
No 149
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=86.27 E-value=8.5 Score=40.36 Aligned_cols=129 Identities=9% Similarity=-0.074 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q 035612 118 DVIALVLGSFILALAVEHYN-----IHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGI 191 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tG-----l~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i 191 (534)
.+++.+.----+-..|..+| +.+.+++++++.... ....+..++.+.++..|+ |.-.-=++=.|++..-
T Consensus 313 gIllQFPfYAGImGmm~~sgl~g~sLa~~is~~fvsiat~-----~TfP~~~flsagivn~FVPSGGGqWaVqgP~~~~A 387 (453)
T PF02667_consen 313 GILLQFPFYAGIMGMMTGSGLGGVSLAQVISNFFVSIATP-----TTFPLFTFLSAGIVNFFVPSGGGQWAVQGPIVMPA 387 (453)
T ss_pred ceeeechHHHHHHHHHhhcCCCcchHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHheeEecCCCceEEEecchHHHH
Confidence 44444444444446666776 667999999887543 334455566677777777 5544457788999999
Q ss_pred HHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 035612 192 LQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILVGMWKTYFPEANPISFSTWFCFGFPLALVIFVAL 271 (534)
Q Consensus 192 ~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~ 271 (534)
++++|.|+. ...++++++-....+.-|.=.-|-+- -.++...|-+-|++...++..++.
T Consensus 388 a~~Lgv~~~----------~~~ma~a~Gda~tNmiQPFWaLPlL~-----------I~GL~aRDImGy~~~~ll~~~~i~ 446 (453)
T PF02667_consen 388 AQALGVDLG----------KTVMAYAWGDAWTNMIQPFWALPLLG-----------IAGLKARDIMGYCVVILLVSGIIV 446 (453)
T ss_pred HHHhCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HcCCcHHHHHHHHHHHHHHHHHHH
Confidence 999998872 35677777765444433322111111 246888999998888777655444
Q ss_pred H
Q 035612 272 W 272 (534)
Q Consensus 272 ~ 272 (534)
.
T Consensus 447 ~ 447 (453)
T PF02667_consen 447 S 447 (453)
T ss_pred H
Confidence 3
No 150
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=82.25 E-value=9.5 Score=37.84 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=105.5
Q ss_pred cCChhhHHHHHHHH----HHHhccCChHHHHhhhcc--hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhH
Q 035612 86 AVPMPITSMAPLFL----FPLFGISSADTVAHSYMD--DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPL 159 (534)
Q Consensus 86 ~ip~~~~al~~~~l----~~l~gi~~~~~v~~~~~~--~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~ 159 (534)
+++.+-+.+++... -.++|+.+-.+.-+.|.. +..-++.-.|-+.+.+.+..+...+.+.++....+ .
T Consensus 317 AlHlA~VGliGLsvIilaTsftGvt~EH~iGkAFqEsLPFTALL~VFFsvVAVIidQ~LF~PiIqfVL~a~~~------~ 390 (516)
T COG3067 317 ALHLAEVGLIGLSVIILATSFTGVTDEHAIGKAFQESLPFTALLTVFFSVVAVIIDQHLFSPIIQFVLQASEH------A 390 (516)
T ss_pred HHHHHHHhhhhhHHHHHHHhhcCCcchhhhHHHHHhcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCCcc------c
Confidence 34555555554432 246787765555444443 33444455566667788888999999988865432 2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHHhhhccccccccchhHHHHH-
Q 035612 160 LLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTLTGTGVNLILV- 238 (534)
Q Consensus 160 l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~l~l~i~~aa~igg~~t~~g~~~n~i~~- 238 (534)
-+..+++...++|+..+|.=+..+.+-=+.+-.++--.++ +.+ ..+..++-.+.|+.+.+||.|-..-+...
T Consensus 391 Ql~lfyifNGLLS~iSDNVFV~TvYInE~k~Al~~G~is~------~qf-elLaVAINTGTNLPSVATPNGQAAFLFLLT 463 (516)
T COG3067 391 QLSLFYIFNGLLSSISDNVFVGTIYINEAKAALEAGAISL------KQF-ELLAVAINTGTNLPSVATPNGQAAFLFLLT 463 (516)
T ss_pred chhHHHHHhhHHHhhccceEEEEEEehhHHHHHHcCCcCH------Hhh-hHhhehhhcCCCCCcccCCCchhhHHHHHH
Confidence 2345777899999988776433222222222222211111 111 12455667788888999998866644322
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035612 239 GMWKTYFPEANPISFSTWFCFGFPLALVIFVALWAILCLFY 279 (534)
Q Consensus 239 ~~~~~~~~~~~~is~~~~~~~~~p~~li~~~~~~~~~~~~~ 279 (534)
+.++. -...||+.....++|..++...+.++.+-+..
T Consensus 464 SalaP----LiRLSYGRMV~MAlPYTlvl~~iGll~vef~L 500 (516)
T COG3067 464 SALAP----LIRLSYGRMVWMALPYTLVLTLVGLLAVEFTL 500 (516)
T ss_pred hhhhH----HHhhhhcceeeeeccHHHHHHHHHHHHHHHcc
Confidence 22221 24689999888999999988777766554443
No 151
>COG4756 Predicted cation transporter [General function prediction only]
Probab=82.21 E-value=49 Score=31.81 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=35.0
Q ss_pred hcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHHH
Q 035612 476 SFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMA 516 (534)
Q Consensus 476 ~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~~ 516 (534)
|.|+-.|+-||.+..|.-+++++||.|.|.|..+..+++..
T Consensus 313 GGmlIPGNiPNIV~AGrLrItm~EWar~gvP~Gia~~~a~f 353 (367)
T COG4756 313 GGMLIPGNIPNIVMAGRLRITMKEWARLGVPVGIAVFIAIF 353 (367)
T ss_pred CCeecCCCCcceeeeeeEEeehhhHHHhcccHHHHHHHHHH
Confidence 45778889999999888899999999999999987666543
No 152
>COG3819 Predicted membrane protein [Function unknown]
Probab=80.24 E-value=48 Score=30.39 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=78.3
Q ss_pred ccCChHHHHh----hhcch-HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---HHHHHHhh
Q 035612 104 GISSADTVAH----SYMDD-VIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGT---TAFVSMWM 175 (534)
Q Consensus 104 gi~~~~~v~~----~~~~~-~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~---~~~lS~~i 175 (534)
..++..++.+ +|.++ .+-++.-.+-+-..+|+.|+-+|--+++.+.-+. ...+++...+.+ ++.++.-
T Consensus 37 sg~~~~~~l~~lGk~f~n~R~l~i~~l~LpligllEr~GLrerA~~~I~~ik~a---T~Grll~~Yl~iRelaaa~gl~- 112 (229)
T COG3819 37 SGMSFVEVLEILGKEFVNNRYLTIIWLILPLIGLLERHGLRERAQNLIQKIKAA---TVGRLLTVYLFIRELAAALGLT- 112 (229)
T ss_pred ccCCHHHHHHHHhHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhchh-
Confidence 3356666554 45552 2222222255567889999988877766554332 223343333332 3333321
Q ss_pred hhHHHHHHHHHHHHHHHHh-----CCCCCcchhhhhhhhhHHHHHHHHHhhhc---cccccccchhHHHHHHHHhhhCCC
Q 035612 176 HNVAAAVIMMPVATGILQN-----LPEVPLQSTLVRKYCKAVVLGVIYSAAVG---GMSTLTGTGVNLILVGMWKTYFPE 247 (534)
Q Consensus 176 sn~a~~~i~~Pi~~~i~~~-----~g~~~~~~~~~~~~~~~l~l~i~~aa~ig---g~~t~~g~~~n~i~~~~~~~~~~~ 247 (534)
|--.-.-+.=|...++++. +|.-+ ++++.+. |.+. +..-|.| |--+.++-..-+.+.+++++.
T Consensus 113 sLgGHpQ~VRPLlaPMaEaAAe~~~g~Lt--e~~~~~i-kA~s---AatdNvg~FFgediFva~g~illi~~fl~q~--- 183 (229)
T COG3819 113 SLGGHPQMVRPLLAPMAEAAAESRFGKLT--EKERQKI-KAMS---AATDNVGLFFGEDIFVAAGSILLIHGFLEQS--- 183 (229)
T ss_pred hhCCChhhhhHhhhhHHHHHhhhhcccCC--hhHHHHH-HHHH---hhcchhhhhhhhhHHHHhhhHHHHHHHHHhc---
Confidence 1111123444555555443 33111 1122222 2111 1112222 223345555666778888875
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH
Q 035612 248 ANPISFSTWFCFGFPLALVIFVALWA 273 (534)
Q Consensus 248 ~~~is~~~~~~~~~p~~li~~~~~~~ 273 (534)
+...+...-..+++|.+++.+++-..
T Consensus 184 Gi~~epl~ia~w~IptaI~a~iIh~~ 209 (229)
T COG3819 184 GIDVEPLHIAVWAIPTAIIAFIIHAI 209 (229)
T ss_pred CCcccchhhhHHHhHHHHHHHHHHHH
Confidence 56777777788899999887666543
No 153
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=77.85 E-value=44 Score=36.47 Aligned_cols=79 Identities=20% Similarity=0.083 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 197 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~~~~g~ 197 (534)
++.......=++...+.-||++.+++..+....++ +.-.++...+..+.++.|=+..++.-.+...++.+..-++|.
T Consensus 418 ~v~ia~A~aGIIvGvitlTGlg~~~s~~l~~l~~g---~l~l~L~lt~~~siiLGMGlPttanYIi~atl~aP~l~~~gv 494 (642)
T COG4666 418 PVAIACATAGIIVGVVTLTGLGLKLSSLLLDLAGG---NLLLLLVLTMVISIILGMGLPTTANYIITATLAAPALIELGV 494 (642)
T ss_pred HHHHHHHhhcceeeeEeecCchHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHcCc
Confidence 56666666667778899999999999999998765 444455556666777777778888888888888888888886
Q ss_pred CC
Q 035612 198 VP 199 (534)
Q Consensus 198 ~~ 199 (534)
++
T Consensus 495 ~~ 496 (642)
T COG4666 495 PL 496 (642)
T ss_pred hH
Confidence 65
No 154
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=72.97 E-value=6.8 Score=38.02 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHcCCC
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISA--IITEFTSNNATTTLVLPLLIQIAKTMHVH 461 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~--~lt~f~Sn~a~~~il~Pi~~~la~~~g~~ 461 (534)
.++-|++-.-.+-+.++.||+.||+++.+.++.+++.-++. +.+++. ++|-|.-.-|+.+=..-.++..-...|-=
T Consensus 188 tIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~~~GLv~--l~~ICs~PfLSP~LGPGAVIaQVIGvLiGvqIg~G~I 265 (331)
T TIGR00825 188 TILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGNPIGLVI--LALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGKGTI 265 (331)
T ss_pred HhhHHHHHHHHHHHHHhcccHHHHHHhhccccccChHHHHH--HHHHHcchhcccccCCceehhhhhhhheeheecCCCC
Confidence 34445555666678899999999999999999876654332 233332 33444434444432333333222223433
Q ss_pred hHHHHHHHHHHHhh--h-cccCCC
Q 035612 462 PLLLMVPGAIGAQF--S-FLLPTG 482 (534)
Q Consensus 462 p~~~~l~~~~~~~~--~-~~~P~~ 482 (534)
|-.++++..++.|. + -..|++
T Consensus 266 pp~lALPALFAIN~Q~~cDFIPVG 289 (331)
T TIGR00825 266 PPHLALPALFAINAQAACDFIPVG 289 (331)
T ss_pred ChhhhhhHHHhhcccccCceeccc
Confidence 55566776666554 2 455664
No 155
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=69.82 E-value=1e+02 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 035612 142 LALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMM 185 (534)
Q Consensus 142 ia~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~ 185 (534)
..+...|..|.+ +.+ ..+.+++.++|.||++.-+.
T Consensus 9 ~gYia~r~~G~r----~Gl-----~ltg~~GGlvSSTA~t~~la 43 (211)
T PF13194_consen 9 AGYIAVRLLGPR----RGL-----LLTGLLGGLVSSTATTVSLA 43 (211)
T ss_pred HHHHHHHHHccc----chH-----HHHHHHHHHHHHHHHHHHHH
Confidence 445555666642 222 25788888999999876544
No 156
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=62.23 E-value=1.9e+02 Score=29.67 Aligned_cols=59 Identities=7% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCh--------hhHHHHHHHHHHHhccCChHHHH--hhhcc--hHHHHHHHHHHHHHHH
Q 035612 75 LAWVFAWWLTEAVPM--------PITSMAPLFLFPLFGISSADTVA--HSYMD--DVIALVLGSFILALAV 133 (534)
Q Consensus 75 ~~~~i~~w~~~~ip~--------~~~al~~~~l~~l~gi~~~~~v~--~~~~~--~~i~li~g~~~l~~~l 133 (534)
++.....|+-+.+|. ++.+++....+...+++|.+++- +.|.. +..-+++..++.+..+
T Consensus 56 vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSIL 126 (438)
T COG3493 56 VLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSIL 126 (438)
T ss_pred HHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhh
Confidence 466778888999985 37777788888899999876652 33433 5566667777776554
No 157
>COG3732 SrlE Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]
Probab=61.18 E-value=8.8 Score=36.70 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHcCC
Q 035612 383 WNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISA--IITEFTSNNATTTLVLPLLIQIAKTMHV 460 (534)
Q Consensus 383 w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~--~lt~f~Sn~a~~~il~Pi~~~la~~~g~ 460 (534)
-+++-|++-.-++-+.+.+||+.|++++.+.++.++..-++ .+.+++. ++|-|.-.-++.+=..-+++..-...|-
T Consensus 184 knilPFMAFvs~lIgii~~tglGd~iA~~l~PLA~~~~Gll--~la~iC~~P~LSP~LGPGAvIaQViGVlIG~qIg~G~ 261 (328)
T COG3732 184 KNILPFMAFVSALIGIILYTGLGDVIAHGLSPLANSIWGLL--LLALICSFPFLSPFLGPGAVIAQVIGVLIGVQIGLGN 261 (328)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHhccccccccChHHHH--HHHHHhcccccCcccCcchhhhhhheeeeeeeeccCC
Confidence 34555666667777889999999999999999986554332 2333333 2333433344443333333322222333
Q ss_pred ChHHHHHHHHHHHhh--h-cccCCC
Q 035612 461 HPLLLMVPGAIGAQF--S-FLLPTG 482 (534)
Q Consensus 461 ~p~~~~l~~~~~~~~--~-~~~P~~ 482 (534)
-|..++++..++-|. + -..|+|
T Consensus 262 Ipp~~ALPALFAiN~Q~gcDFiPVG 286 (328)
T COG3732 262 IPPHLALPALFAINAQAGCDFIPVG 286 (328)
T ss_pred CChhhhhhhHhhccccccCceeecc
Confidence 345566666555544 2 444554
No 158
>PRK09458 pspB phage shock protein B; Provisional
Probab=53.61 E-value=30 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 035612 257 FCFGFPLALVIFVALWAILCLFYCSRG 283 (534)
Q Consensus 257 ~~~~~p~~li~~~~~~~~~~~~~~~~~ 283 (534)
...+.|..+.++++..+++...|+.+.
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcccc
Confidence 445788888888888777777787654
No 159
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=53.42 E-value=2.5e+02 Score=28.18 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCC
Q 035612 118 DVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLP 196 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g 196 (534)
..-+++.|+-.+..++++. ..+|+-+.+ .+..+ +|.. -.+...+++..+ |.++++.+.... ..+ |
T Consensus 10 Glgl~l~Gl~~~~~~l~~~-~g~~~~~~l-~~~t~---~~~~----a~l~G~~~Tal~QSSsa~t~i~i~l----v~~-G 75 (307)
T TIGR00704 10 AVAFLLWGMHIVRTGVMRV-FGARLRTVL-SRSTE---KKPL----AFLAGIGVTAIVQSSNATTVLVISF----VAA-G 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhhHHHHHH-HHHcC---CcHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHC-C
Confidence 4556777888888888876 345655444 33333 2332 222455555555 666766655544 322 2
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 197 EVPLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
.-+ ..-.+++..++|+|+..
T Consensus 76 ~l~----------~~~al~iilGANiGTt~ 95 (307)
T TIGR00704 76 VLS----------LAPAIVIILGANVGTTL 95 (307)
T ss_pred CCC----------HHHHHHHHHHhhHHHHH
Confidence 211 23557888999988654
No 160
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=52.91 E-value=96 Score=27.13 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCCCc
Q 035612 122 LVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEVPL 200 (534)
Q Consensus 122 li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~~~ 200 (534)
++.|.-.+..++++-.- +++-.. +.+..+ +|. .-++..++++..+ |.++++.+..+.+ ..--.+
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~-l~~~~~---~~~----~~~l~G~~~T~l~QSSsa~~~i~v~l~----~~g~l~-- 66 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRAL-LARLTS---NPL----LAFLLGALLTALVQSSSAVTLIVVSLV----AAGVLS-- 66 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHH-HHHHcC---CCH----HHHHHHHHHHHHhcchHHHHHHHHHHH----HhcccC--
Confidence 46677778877777655 554443 333333 332 2333566666666 8888888777664 221111
Q ss_pred chhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 201 QSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 201 ~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
..-.+++..++|+|+..
T Consensus 67 ---------~~~al~~ilGaNiGtt~ 83 (142)
T PF02690_consen 67 ---------LEQALAIILGANIGTTI 83 (142)
T ss_pred ---------HHHHHHHHHhhhHHHHH
Confidence 23457888899988654
No 161
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=52.83 E-value=2.6e+02 Score=28.15 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=47.5
Q ss_pred HHHHh-hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 035612 109 DTVAH-SYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM--HNVAAAVIMM 185 (534)
Q Consensus 109 ~~v~~-~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i--sn~a~~~i~~ 185 (534)
.|+++ .+...++++++..+.....+|+||+.|-.++... .+- .|.. +++...+++.+. -..+-+.+-.
T Consensus 249 ~e~lkrafnprI~~lliavmvfk~vIe~SGl~e~~ae~~l-~f~----aP~a----l~l~~~fiiGlaTGI~fayvsiaf 319 (388)
T COG1906 249 LEVLKRAFNPRIVLLLIAVMVFKEVIEHSGLVEIFAEIML-SFH----APVA----LFLLLTFIIGLATGIEFAYVSIAF 319 (388)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHhccHHHHHHHHHh-ccc----hhhH----HHHHHHHHHHHhhhhHHHHHHHhh
Confidence 34553 5666788999999999999999999996666543 221 2332 222222443333 2224457777
Q ss_pred HHHHHHHHh
Q 035612 186 PVATGILQN 194 (534)
Q Consensus 186 Pi~~~i~~~ 194 (534)
|...+..+.
T Consensus 320 PlL~pff~g 328 (388)
T COG1906 320 PLLMPFFTG 328 (388)
T ss_pred hhhHHHhcc
Confidence 887776654
No 162
>COG3192 EutH Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=49.18 E-value=2.8e+02 Score=27.48 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 035612 118 DVIALVLGSFILALAVE-----HYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGIL 192 (534)
Q Consensus 118 ~~i~li~g~~~l~~~l~-----~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~i~ 192 (534)
+.+..++..|++-.+++ |+|+.++..+-+... | ....-+.+++...-+ .+-++.|++.++.
T Consensus 5 e~iiyim~~fm~lgAld~il~~k~GlG~~F~eGi~Am-G----~l~LamvGi~~laPv---------La~il~pvv~P~y 70 (389)
T COG3192 5 EIIIYIMMFFMLLGALDRILGNKFGLGGQFEEGIMAM-G----ALGLAMVGITALAPV---------LAKILSPVVGPVY 70 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCchHHHHHHHHhh-h----HHHHHHHHHHHHHHH---------HHHHhhhhhHHHH
Confidence 44444444444444444 567777776655432 2 111122222222222 2467788888899
Q ss_pred HhCCCCCc
Q 035612 193 QNLPEVPL 200 (534)
Q Consensus 193 ~~~g~~~~ 200 (534)
+.+|.||+
T Consensus 71 ~alGadps 78 (389)
T COG3192 71 EALGADPS 78 (389)
T ss_pred HHhCCCHH
Confidence 99998884
No 163
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=46.07 E-value=3.3e+02 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 035612 312 KMVLAVFGMLIALWMTRSI 330 (534)
Q Consensus 312 ~~~l~~~~~~i~l~~~~~~ 330 (534)
+.+..++...+++|+.++.
T Consensus 178 ~sv~LLlGgliIG~~~g~~ 196 (327)
T PF05982_consen 178 KSVVLLLGGLIIGFLAGPE 196 (327)
T ss_pred chHHHHHHHHHHhheeCcc
Confidence 4567778888899998765
No 164
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.74 E-value=45 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 035612 258 CFGFPLALVIFVALWAILCLFYCSR 282 (534)
Q Consensus 258 ~~~~p~~li~~~~~~~~~~~~~~~~ 282 (534)
....|..+.++++...++...|+.+
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666565566544
No 165
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.77 E-value=50 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 035612 258 CFGFPLALVIFVALWAILCLFYCSR 282 (534)
Q Consensus 258 ~~~~p~~li~~~~~~~~~~~~~~~~ 282 (534)
...+|..++.+++...++...|+.+
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k 29 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777666666666666644
No 166
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=38.47 E-value=69 Score=31.37 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=48.5
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHH
Q 035612 109 DTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAV 182 (534)
Q Consensus 109 ~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~ 182 (534)
+|..+..-++++=++...-++-..+..||+.+++|+.+.-+.|+ -...+++++.+..-++|.+...-|+.+
T Consensus 179 RdtidtvlktIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~---~~GLv~l~~ICs~PfLSP~LGPGAVIa 249 (331)
T TIGR00825 179 RDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGN---PIGLVILALICSFPLLSPFLGPGAVIA 249 (331)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccHHHHHHhhccccccC---hHHHHHHHHHHcchhcccccCCceehh
Confidence 44444444555555555556667889999999999988877663 244556667777778888886666544
No 167
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=35.65 E-value=6.1e+02 Score=27.56 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCCh
Q 035612 384 NIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHP 462 (534)
Q Consensus 384 ~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p 462 (534)
+.-+++.+.=.++.+.+-..-.+...+.+..+.+.+..... +...+|.. -|..+++.++.- ++. .|+=.
T Consensus 139 GiGl~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~~~~~~l~-----~g~~lt~l~~SS~A~i~i~~~----l~~-~glis 208 (533)
T COG1283 139 GIGLIFLSLELLGQATEPLRQSPAFSDFIAKLSDDPIVALL-----IGALLTALIQSSLAAIGILLS----LTS-QGLIS 208 (533)
T ss_pred HHHHHHHHHHHHHHhhhhhhhchhHHHHHHHhccccHHHHH-----HHHHHHHHHHHHHHHHHHHHH----HHh-Ccccc
Confidence 33444455555566666555566666666666554433221 33333333 334444443332 222 23333
Q ss_pred HHHHHHHHHHHhhhcccCCCCchhhHhhcCCCCCHHHHHHHhHHHHHHHHHHH
Q 035612 463 LLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAM 515 (534)
Q Consensus 463 ~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g~~~~~~~~k~g~~~~ii~~ii~ 515 (534)
...+++..+++|.|... +..+..-.+....+.-...-+.+..++.++.
T Consensus 209 ~~~~~alvLGaNlGt~i-----~a~laa~~~~~~arr~a~~~ll~~~iG~li~ 256 (533)
T COG1283 209 LEAALALVLGANLGTTI-----TAVLAALGASAAARRVALGNLLFNLIGVLIF 256 (533)
T ss_pred hhHHHHHHHHHhhhchh-----HHHHHhcccchhHHHHHHHHHHHHHHhHHHH
Confidence 44556666777776322 1111111223445555555555555553333
No 168
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=33.24 E-value=3.3e+02 Score=23.73 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 035612 388 LLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEF-TSNNATTTLVLPLLIQIAKTMHVHPLLLM 466 (534)
Q Consensus 388 l~~~~~~l~~~l~~sG~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f-~Sn~a~~~il~Pi~~~la~~~g~~p~~~~ 466 (534)
++.|.-.+.+.++...- +.+.+.+....++|...+. +...+|.. -|.++++.+.++.+ . .|.=+..-.
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~~~~~~~l-----~G~~~T~l~QSSsa~~~i~v~l~----~-~g~l~~~~a 70 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRALLARLTSNPLLAFL-----LGALLTALVQSSSAVTLIVVSLV----A-AGVLSLEQA 70 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHH-----HHHHHHHHhcchHHHHHHHHHHH----H-hcccCHHHH
Confidence 45566667777766544 5566666666666644332 22333333 46666666665554 2 344445556
Q ss_pred HHHHHHHhhh
Q 035612 467 VPGAIGAQFS 476 (534)
Q Consensus 467 l~~~~~~~~~ 476 (534)
+++.+++|.|
T Consensus 71 l~~ilGaNiG 80 (142)
T PF02690_consen 71 LAIILGANIG 80 (142)
T ss_pred HHHHHhhhHH
Confidence 7777888887
No 169
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=32.08 E-value=2.4e+02 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=19.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Q 035612 249 NPISFSTWFCFGFPLALVIFVALW 272 (534)
Q Consensus 249 ~~is~~~~~~~~~p~~li~~~~~~ 272 (534)
..+++..|.++++|..++.+....
T Consensus 99 Pp~~~~T~lLW~~Pv~llllG~~~ 122 (153)
T COG3088 99 PPLTGQTLLLWGLPVVLLLLGGVL 122 (153)
T ss_pred CCCchhHHHHHHhHHHHHHHHHHH
Confidence 468999999999999887655543
No 170
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=30.21 E-value=4e+02 Score=27.57 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHH-HhcHHH-HHHHHHHHH
Q 035612 72 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVE-HYNIHK-RLALNITIL 149 (534)
Q Consensus 72 l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~-~tGl~~-ria~~i~~~ 149 (534)
=-++-.++.+|-.+..|.+.+-.++.++.|+.++. .++-+.++.... +.|.=+ -..+++...
T Consensus 287 dTI~sGV~~L~~~Gs~~vA~VVFiASilVP~~Ki~----------------~la~Ll~~~~fk~~~~~k~~~~lyr~v~~ 350 (418)
T COG2995 287 DTILSGVISLWSSGSYPVAAVVFLASILVPLLKII----------------ALAWLLLSAHFKRQRGLKTRMLLYRIVEF 350 (418)
T ss_pred cHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhhcccccChHHHHHHHHHHHH
Confidence 34567788889888888888888888888877642 233333333322 233322 235566666
Q ss_pred hcCCCCChhHHHHHHHHHHHHHH
Q 035612 150 FCGEPMNPPLLLLGICGTTAFVS 172 (534)
Q Consensus 150 ~g~~~~~~~~l~~~~~~~~~~lS 172 (534)
+| +|-++-+++++..+|
T Consensus 351 IG------RWSMiDlFVIallms 367 (418)
T COG2995 351 VG------RWSMIDLFVIALLMS 367 (418)
T ss_pred Hc------chHHHHHHHHHHHHH
Confidence 66 234455665555444
No 171
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=28.88 E-value=30 Score=15.65 Aligned_cols=7 Identities=29% Similarity=0.050 Sum_probs=5.5
Q ss_pred CCCCCCC
Q 035612 11 SGDIKAP 17 (534)
Q Consensus 11 ~~~~~~~ 17 (534)
|-+||||
T Consensus 4 S~~w~PG 10 (10)
T PF00446_consen 4 SHGWKPG 10 (10)
T ss_pred ccccCCC
Confidence 6788886
No 172
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=28.82 E-value=7.9e+02 Score=26.74 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcHHH----HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhCCCC
Q 035612 124 LGSFILALAVEHYNIHK----RLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM-HNVAAAVIMMPVATGILQNLPEV 198 (534)
Q Consensus 124 ~g~~~l~~~l~~tGl~~----ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~i-sn~a~~~i~~Pi~~~i~~~~g~~ 198 (534)
++.+++|..+.++|+-+ |+-..+.+... + .+..++.|+ +.+..+ |.++++.+....+ .. |.-
T Consensus 14 v~l~L~g~~~m~~Gv~~~~G~~lr~~L~~~t~-n--p~~gvl~Gi-----~~T~llQSStatt~lt~gfV---~a--Gl~ 80 (533)
T COG1283 14 VALLLFGIKMVGDGVQRAAGDRLRKILARFTS-N--PILGVLAGI-----VATALLQSSTATTVLTIGFV---AA--GLL 80 (533)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC-C--cHHHHHHHH-----HHHHHHHhcchHHHHHHHHH---hc--ccc
Confidence 44455555666666544 44443333322 1 233333333 333344 6667766655553 11 221
Q ss_pred CcchhhhhhhhhHHHHHHHHHhhhcccc
Q 035612 199 PLQSTLVRKYCKAVVLGVIYSAAVGGMS 226 (534)
Q Consensus 199 ~~~~~~~~~~~~~l~l~i~~aa~igg~~ 226 (534)
. ....+++..++|+|...
T Consensus 81 s----------l~~Ai~vilGANIGTt~ 98 (533)
T COG1283 81 S----------LKQAIGVILGANIGTTV 98 (533)
T ss_pred c----------hhhhhhheeccchhHHH
Confidence 1 12446777888877543
No 173
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=28.24 E-value=6.7e+02 Score=25.74 Aligned_cols=69 Identities=14% Similarity=0.338 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHh------CHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 035612 385 IILLLGAGFAIADGVRTS------GLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTM 458 (534)
Q Consensus 385 ~i~l~~~~~~l~~~l~~s------G~~~~ia~~l~~l~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~~~ 458 (534)
.++.+...+.+-+++++. |+.+..-+.+...+ +..+-..-+..++=++ +..+.|++.++.+.+
T Consensus 6 iiiyIm~~f~viGaiD~iign~~~GlG~~FeeGi~aMG--~lalsm~GI~~laP~l---------s~~l~~ii~Pi~~~l 74 (372)
T PRK15086 6 IIIYIMMFFMLIGAIDRIIGNKFEGLGEQFEEGIMAMG--PLALAMVGIMALAPVL---------AHVLGPVIIPIYEAL 74 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhH--HHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHHh
Confidence 455666666666676663 67666666554332 1111111122222222 234567777777777
Q ss_pred CCChHH
Q 035612 459 HVHPLL 464 (534)
Q Consensus 459 g~~p~~ 464 (534)
|.||-.
T Consensus 75 gaDpsm 80 (372)
T PRK15086 75 GADPSM 80 (372)
T ss_pred CCCHHH
Confidence 777743
No 174
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=25.97 E-value=6.4e+02 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHHHHHHHHhcHHHHH
Q 035612 117 DDVIALVLGSFILALAVEHYNIHKRL 142 (534)
Q Consensus 117 ~~~i~li~g~~~l~~~l~~tGl~~ri 142 (534)
++...-++.+..+...++.|...--+
T Consensus 42 ~~~~~a~l~G~~~Tal~QSSsa~t~i 67 (307)
T TIGR00704 42 EKKPLAFLAGIGVTAIVQSSNATTVL 67 (307)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443333
No 175
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=25.68 E-value=7.4e+02 Score=25.42 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 035612 117 DDVIALVLGSFILALAVEHY------NIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATG 190 (534)
Q Consensus 117 ~~~i~li~g~~~l~~~l~~t------Gl~~ria~~i~~~~g~~~~~~~~l~~~~~~~~~~lS~~isn~a~~~i~~Pi~~~ 190 (534)
++.+.-++..+.+-.++++. |+.+..-+-+... | ....-+.+++..+-++ +....|++.+
T Consensus 4 n~iiiyIm~~f~viGaiD~iign~~~GlG~~FeeGi~aM-G----~lalsm~GI~~laP~l---------s~~l~~ii~P 69 (372)
T PRK15086 4 NEIIIYIMMFFMLIGAIDRIIGNKFEGLGEQFEEGIMAM-G----PLALAMVGIMALAPVL---------AHVLGPVIIP 69 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHh-H----HHHHHHHHHHHHHHHH---------HHHHhhhHHH
Confidence 56677777777777788874 7776666655432 2 1222233444333333 3456778888
Q ss_pred HHHhCCCCCc
Q 035612 191 ILQNLPEVPL 200 (534)
Q Consensus 191 i~~~~g~~~~ 200 (534)
+.+.+|.||+
T Consensus 70 i~~~lgaDps 79 (372)
T PRK15086 70 IYEALGADPS 79 (372)
T ss_pred HHHHhCCCHH
Confidence 8999998884
No 176
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.80 E-value=62 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 035612 250 PISFSTWFCFGFPLALVIFVALWAILCLFYCSRG 283 (534)
Q Consensus 250 ~is~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~ 283 (534)
.++-.||...|+..+++.-++.++ ..++||.++
T Consensus 27 ~~sp~qW~aIGvi~gi~~~~lt~l-tN~YFK~k~ 59 (68)
T PF04971_consen 27 QFSPSQWAAIGVIGGIFFGLLTYL-TNLYFKIKE 59 (68)
T ss_pred ccCcccchhHHHHHHHHHHHHHHH-hHhhhhhhH
Confidence 567779999999998887777765 455665543
No 177
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=24.73 E-value=8.3e+02 Score=25.63 Aligned_cols=71 Identities=10% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCCh--------hhHHHHHHHHHHHhccCChHHH--Hhhhcc--hHHHHHHHHHHHH
Q 035612 63 DGQATSRNMLGVLAWVFAWWLTEAVPM--------PITSMAPLFLFPLFGISSADTV--AHSYMD--DVIALVLGSFILA 130 (534)
Q Consensus 63 ~~~~~~~~~l~i~~~~i~~w~~~~ip~--------~~~al~~~~l~~l~gi~~~~~v--~~~~~~--~~i~li~g~~~l~ 130 (534)
+.+-.+-......+..+..|+-+++|. .+.+++....+...|++|.+.+ .+.|.+ +..-+++...+.+
T Consensus 27 p~~m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 27 PTDMIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHh
Confidence 334445556667788889999999994 3566667777788999986543 345544 5566667777777
Q ss_pred HHH
Q 035612 131 LAV 133 (534)
Q Consensus 131 ~~l 133 (534)
..+
T Consensus 107 SIL 109 (414)
T PF03390_consen 107 SIL 109 (414)
T ss_pred hhh
Confidence 554
No 178
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=21.56 E-value=4.2e+02 Score=30.31 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhccCChHHHHhhhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 035612 71 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNIT 147 (534)
Q Consensus 71 ~l~i~~~~i~~w~~~~ip~~~~al~~~~l~~l~gi~~~~~v~~~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~ 147 (534)
+++++...++...+..+|-...+++..+++=+|= ..|.-.+.-+..+. ++-...+++.++-.+++.+|+-...-
T Consensus 427 mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF-~ePryTf~v~d~~y--~vTf~vml~vai~t~~Lt~~vr~Qa~ 500 (890)
T COG2205 427 MLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFF-TEPRYTFAVSDPQY--LVTFAVMLAVALLTGNLTARVREQAR 500 (890)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhee-cCCceEEEEecCch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444566777777776666553332 23332222222222 23334555667777788887766543
No 179
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=21.36 E-value=5.8e+02 Score=22.63 Aligned_cols=128 Identities=18% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhh---ccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 035612 380 KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFL---EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAK 456 (534)
Q Consensus 380 ~v~w~~i~l~~~~~~l~~~l~~sG~~~~ia~~l~~l---~~~~~~~~~~~~~~~~~~lt~f~Sn~a~~~il~Pi~~~la~ 456 (534)
.+.-+.+-.+.+.+..-.+++.+|..||+.+.+++. -+.|.-..- ..+---+|.+++.-+ +..+.+
T Consensus 29 ~IA~~i~P~lv~~lv~i~~fr~sGald~v~~~l~pv~s~~G~p~Ea~p-------v~l~~p~Sg~gA~Gv----~~dl~~ 97 (162)
T COG0700 29 TIATTILPYLVAMLVIIAAFRISGALDWVGHILSPVMSLIGLPGEAAP-------VALAKPMSGGGAVGV----AADLAT 97 (162)
T ss_pred eehhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHcCCChhhhH-------HHHHhhccCccHHHH----HHHHHH
Confidence 344456777888888899999999999999999752 244443211 112234566655543 456777
Q ss_pred HcCCChHHHHHHHHHHHhhhcccCCCCchhhHhhcCC-CCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035612 457 TMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTG-HIEIQDMIKTGLPLKIAGIAAMAFLMPTL 522 (534)
Q Consensus 457 ~~g~~p~~~~l~~~~~~~~~~~~P~~~~~n~i~~~~g-~~~~~~~~k~g~~~~ii~~ii~~~~~~~~ 522 (534)
+.|.|-..-.++...--+.. |++ -.-...+|+- --+.++.++.++...++..+..+.++++.
T Consensus 98 ~~g~ds~~~~vaa~~~gste--ttf--yvl~vyfG~vgik~~~~al~~~l~advig~i~ai~V~~l~ 160 (162)
T COG0700 98 TYGLDSFIGTVAAPAQGSTE--TTF--YVLGVYFGAVGIKKIRKALPVGLTADVIGAIAAIWVMQLF 160 (162)
T ss_pred hcCCcchhHHHHHHHhcccC--CeE--EEEEEEEehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888655433322211111 111 1123445553 33578999999999999988887777653
Done!