Query 035612
Match_columns 534
No_of_seqs 281 out of 2302
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 07:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 13.2 1.8E+02 0.013 21.9 5.7 60 114-173 61-121 (130)
2 d2oara1 f.16.1.1 (A:10-118) Ga 8.9 1.9E+02 0.014 21.0 4.5 21 250-270 57-77 (109)
3 d2csba3 a.60.2.4 (A:410-464) T 4.4 1.8E+02 0.013 17.2 1.6 22 131-152 3-24 (55)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.2 3.6E+02 0.026 15.0 2.7 16 44-59 12-27 (36)
5 d2axti1 f.23.37.1 (I:1-35) Pho 2.8 4.7E+02 0.034 14.4 2.3 12 517-528 11-22 (35)
6 d1oedc_ f.36.1.1 (C:) Acetylch 2.6 1.1E+03 0.084 18.2 7.1 19 120-138 66-84 (260)
7 d1m56d_ f.23.8.1 (D:) Bacteria 2.5 6.1E+02 0.045 14.7 3.7 20 496-515 15-34 (42)
8 d1qled_ f.23.8.1 (D:) Bacteria 2.4 6.5E+02 0.047 14.6 3.2 19 496-514 16-34 (43)
9 d1hw1a1 a.4.5.6 (A:5-78) Fatty 2.2 2.4E+02 0.017 18.5 0.6 8 11-18 18-25 (74)
10 d3bwga1 a.4.5.6 (A:5-82) Trans 2.0 2.2E+02 0.016 18.8 0.0 14 11-24 13-27 (78)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=13.18 E-value=1.8e+02 Score=21.92 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=40.1
Q ss_pred hhcchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHHHHHHH
Q 035612 114 SYMDDVIALVLGSFILALAVEHYNIHKRLALNITILF-CGEPMNPPLLLLGICGTTAFVSM 173 (534)
Q Consensus 114 ~~~~~~i~li~g~~~l~~~l~~tGl~~ria~~i~~~~-g~~~~~~~~l~~~~~~~~~~lS~ 173 (534)
+|..+.+.+++=...+++++-++-.-=.++-+..... +++..+++.+..+.-.++++.|.
T Consensus 61 ~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~wa~~~~vsv 121 (130)
T d1kf6c_ 61 DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 121 (130)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHHHHHHHHHHH
Confidence 4555777778888888888888877666666666543 45555667666666655555543
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.94 E-value=1.9e+02 Score=20.96 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q 035612 250 PISFSTWFCFGFPLALVIFVA 270 (534)
Q Consensus 250 ~is~~~~~~~~~p~~li~~~~ 270 (534)
.+.|+.|.-..+=+.++..++
T Consensus 57 ~i~~G~fi~a~InFlIiA~vv 77 (109)
T d2oara1 57 TIDLNVLLSAAINFFLIAFAV 77 (109)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 467776666554444444433
No 3
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=4.42 E-value=1.8e+02 Score=17.19 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=17.2
Q ss_pred HHHHHhcHHHHHHHHHHHHhcC
Q 035612 131 LAVEHYNIHKRLALNITILFCG 152 (534)
Q Consensus 131 ~~l~~tGl~~ria~~i~~~~g~ 152 (534)
..-.+.|+.+.-|.++++.+|+
T Consensus 3 eltkkegvgrktaerllrafgn 24 (55)
T d2csba3 3 ELTKKEGVGRKTAERLLRAFGN 24 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSS
T ss_pred hhhhhccccHhHHHHHHHHhCC
Confidence 3445778888999999999883
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.15 E-value=3.6e+02 Score=15.04 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 035612 44 FYILLGPLLCAVICVC 59 (534)
Q Consensus 44 ~~~~l~~~~~~~~~~~ 59 (534)
..+++.|..|++++..
T Consensus 12 ~LFilvPt~FLliLyv 27 (36)
T d2axtm1 12 ALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhe
Confidence 4566778887766543
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.79 E-value=4.7e+02 Score=14.37 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhc
Q 035612 517 FLMPTLGAYVFG 528 (534)
Q Consensus 517 ~~~~~~~~~~~~ 528 (534)
++..+....+||
T Consensus 11 vV~fFv~lFiFG 22 (35)
T d2axti1 11 VVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444444554
No 6
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.64 E-value=1.1e+03 Score=18.24 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhcH
Q 035612 120 IALVLGSFILALAVEHYNI 138 (534)
Q Consensus 120 i~li~g~~~l~~~l~~tGl 138 (534)
.++...+.+++.++-.+-+
T Consensus 66 ~y~~~~~~~v~~s~~~t~~ 84 (260)
T d1oedc_ 66 KYLMFIMSLVTGVIVNCGI 84 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.51 E-value=6.1e+02 Score=14.67 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=10.7
Q ss_pred CHHHHHHHhHHHHHHHHHHH
Q 035612 496 EIQDMIKTGLPLKIAGIAAM 515 (534)
Q Consensus 496 ~~~~~~k~g~~~~ii~~ii~ 515 (534)
++..|+|+.....++++++.
T Consensus 15 TF~gFik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 15 TFAGFVRMVTWAAVVIVAAL 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666655555444433
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.37 E-value=6.5e+02 Score=14.64 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=10.2
Q ss_pred CHHHHHHHhHHHHHHHHHH
Q 035612 496 EIQDMIKTGLPLKIAGIAA 514 (534)
Q Consensus 496 ~~~~~~k~g~~~~ii~~ii 514 (534)
++..|+|+.....++++++
T Consensus 16 TF~gFi~~~t~~~i~~i~~ 34 (43)
T d1qled_ 16 TFAGFIKGATWVSILSIAV 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666655555544443
No 9
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.25 E-value=2.4e+02 Score=18.51 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=5.5
Q ss_pred CCCCCCCC
Q 035612 11 SGDIKAPL 18 (534)
Q Consensus 11 ~~~~~~~~ 18 (534)
+++|+||+
T Consensus 18 ~g~~~~G~ 25 (74)
T d1hw1a1 18 NNRFPPGT 25 (74)
T ss_dssp TTSSCTTS
T ss_pred cCCCCCcC
Confidence 56777776
No 10
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=1.98 E-value=2.2e+02 Score=18.77 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCC-CCCccc
Q 035612 11 SGDIKAPL-LPSHRQ 24 (534)
Q Consensus 11 ~~~~~~~~-~~~~~~ 24 (534)
+++|+||+ +|.+.+
T Consensus 13 ~g~l~~G~~LPse~~ 27 (78)
T d3bwga1 13 EHQLQQGDKLPVLET 27 (78)
T ss_dssp HTTCCTTCBCCCHHH
T ss_pred cCCCCCcCCCcCHHH
Done!