BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035614
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 5/240 (2%)
Query: 36 FRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDE 95
FR++ L + + Y+ H +QT +F ++K+ +YG +M+I E +L + VDE
Sbjct: 32 FRNYTSGPLLDRVF-TTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDE 90
Query: 96 SDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDT 155
SDPD+D P H QTAE IR+ HP + W L L+HDLGK++ A E QW VVGDT
Sbjct: 91 SDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIM---ALWGEPQWAVVGDT 147
Query: 156 FPLGCAFDNNIVH-HQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAK 214
FP+GC ++V F++NPD ++P ++T+LG+Y + GL+N+ MSWGHDEY+Y + K
Sbjct: 148 FPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMK 207
Query: 215 GNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKSKYFPE 274
N +LP ++IRFHSFY H G Y L + +D +ML W+Q FNK+DLY+K P+
Sbjct: 208 FNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDLYTKCPDLPD 267
>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 246
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 125/214 (58%), Gaps = 7/214 (3%)
Query: 53 YRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTA 112
Y+ H +QT +F K ++G + ++ E +LL VDESD D P H QTA
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65
Query: 113 EAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVH-HQF 171
E IR+ HP + W L L+HDLGKVL A E QW VVGDTFP+GC ++V
Sbjct: 66 EGIRKAHPDKDWFHLVGLLHDLGKVL---ALFGEPQWAVVGDTFPVGCRPQASVVFCDST 122
Query: 172 FKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFH 231
F++NPD ++P ++T+LG Y + GLD + SWGHDEY Y V K N +LPP + IRFH
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 182
Query: 232 SFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDL 265
SFY H Y L + +D L W++ FNK+DL
Sbjct: 183 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDL 216
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 129/236 (54%), Gaps = 19/236 (8%)
Query: 53 YRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTA 112
Y+ H +QT +F K ++G + ++ E +LL VDES P H QTA
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62
Query: 113 EAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVH-HQF 171
E IR+ HP + W L L+HDLGKVL A E QW VVGDTFP+GC ++V
Sbjct: 63 EGIRKAHPDKDWFHLVGLLHDLGKVL---ALFGEPQWAVVGDTFPVGCRPQASVVFCDST 119
Query: 172 FKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFH 231
F++NPD ++P ++T+LG Y + GLD + SWGHDEY Y V K N +LPP + IRFH
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 179
Query: 232 SFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSK---------SKYFPEKLKW 278
SFY H Y L + +D L W++ FNK+DL K KY P L W
Sbjct: 180 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDLVDKLRPYYQGLIDKYCPGILSW 235
>pdb|3BBN|U Chain U, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 190
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 39 FEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGK 74
F +E +R ++QEC R+ T + +K E K
Sbjct: 114 FRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAK 149
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 64 FANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHL 108
FA +K+EE+ KL ++ ++ W E + V + DE +D L
Sbjct: 141 FAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDAL 185
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 73 GKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH-------PHEYWL 125
G+ + +S W+ + + YV+ES +EP +Q + P EY L
Sbjct: 141 GENETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYIL 200
Query: 126 QLTALIHDLGKVLLHPAFGEETQWCV 151
L+ L +L + ++ +T C+
Sbjct: 201 GLSDLTGELXRRCINSLGSGDTDTCL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,310
Number of Sequences: 62578
Number of extensions: 409811
Number of successful extensions: 939
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 17
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)