Query 035614
Match_columns 278
No_of_seqs 130 out of 210
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 5E-135 1E-139 920.0 9.4 232 45-278 4-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 2.3E-97 5E-102 647.6 11.3 191 20-213 12-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.1 0.00067 1.4E-08 60.4 4.7 96 82-232 4-99 (179)
4 smart00471 HDc Metal dependent 95.5 0.0067 1.5E-07 44.5 1.5 38 102-139 3-45 (124)
5 TIGR00277 HDIG uncharacterized 93.8 0.048 1E-06 38.8 2.3 29 201-231 49-77 (80)
6 TIGR00488 putative HD superfam 93.6 0.043 9.2E-07 46.2 2.1 37 102-138 7-47 (158)
7 PF01966 HD: HD domain; Inter 93.5 0.023 5E-07 42.6 0.2 35 105-139 2-42 (122)
8 COG4341 Predicted HD phosphohy 92.5 0.073 1.6E-06 48.0 1.9 39 100-139 27-65 (186)
9 PRK00106 hypothetical protein; 90.7 0.43 9.4E-06 48.9 5.4 87 83-232 332-422 (535)
10 PF08668 HDOD: HDOD domain; I 90.4 0.36 7.8E-06 40.9 3.9 127 72-232 47-194 (196)
11 TIGR01596 cas3_HD CRISPR-assoc 90.1 0.12 2.6E-06 42.5 0.8 34 105-138 2-47 (177)
12 cd00077 HDc Metal dependent ph 88.6 0.2 4.3E-06 37.1 0.9 35 104-138 3-44 (145)
13 COG2316 Predicted hydrolase (H 81.0 1.6 3.5E-05 39.9 3.3 55 78-138 28-86 (212)
14 TIGR00295 conserved hypothetic 80.7 2.2 4.8E-05 36.6 3.9 29 203-233 61-89 (164)
15 TIGR03319 YmdA_YtgF conserved 80.1 2.3 5E-05 43.2 4.4 88 83-233 311-402 (514)
16 PRK12705 hypothetical protein; 78.0 3.6 7.8E-05 42.2 5.0 72 104-237 324-399 (508)
17 TIGR02621 cas3_GSU0051 CRISPR- 77.9 1.5 3.2E-05 47.4 2.4 35 104-138 676-716 (844)
18 PRK12703 tRNA 2'-O-methylase; 74.5 4.1 8.9E-05 39.8 4.2 59 73-138 163-226 (339)
19 PRK10885 cca multifunctional t 71.1 2.4 5.1E-05 41.7 1.7 36 102-138 226-261 (409)
20 PRK07152 nadD putative nicotin 68.1 3.2 7E-05 39.3 1.9 28 204-232 259-287 (342)
21 PRK05007 PII uridylyl-transfer 65.4 14 0.00031 39.9 6.2 35 102-136 460-512 (884)
22 COG1505 Serine proteases of th 63.4 4.1 8.8E-05 43.0 1.7 145 113-273 414-582 (648)
23 COG2206 c-di-GMP phosphodieste 61.9 5.8 0.00013 37.8 2.3 48 88-139 136-191 (344)
24 COG3481 Predicted HD-superfami 61.5 7.9 0.00017 37.3 3.1 49 107-156 148-198 (287)
25 PF15608 PELOTA_1: PELOTA RNA 61.1 21 0.00046 29.6 5.2 55 56-114 16-78 (100)
26 COG1639 Predicted signal trans 60.2 4.7 0.0001 38.7 1.4 131 69-233 66-217 (289)
27 TIGR03760 ICE_TraI_Pfluor inte 59.4 6.8 0.00015 35.8 2.2 15 125-139 108-122 (218)
28 PRK13480 3'-5' exoribonuclease 58.0 6.4 0.00014 37.8 1.9 33 108-140 167-201 (314)
29 PRK05092 PII uridylyl-transfer 55.2 7.4 0.00016 42.0 2.0 31 106-136 496-544 (931)
30 PRK12704 phosphodiesterase; Pr 53.7 17 0.00036 37.2 4.1 54 83-138 317-374 (520)
31 KOG4481 Uncharacterized conser 53.3 13 0.00028 34.1 2.9 34 75-119 112-145 (194)
32 PRK03381 PII uridylyl-transfer 52.1 10 0.00023 40.2 2.5 34 103-136 420-456 (774)
33 TIGR02692 tRNA_CCA_actino tRNA 51.8 63 0.0014 32.2 7.7 38 102-139 257-296 (466)
34 PF13328 HD_4: HD domain; PDB: 48.9 17 0.00038 30.2 2.9 46 88-134 4-49 (153)
35 COG4820 EutJ Ethanolamine util 47.2 11 0.00024 35.8 1.5 79 109-192 187-271 (277)
36 PRK00275 glnD PII uridylyl-tra 46.2 12 0.00027 40.4 2.0 36 102-137 459-512 (895)
37 PF06784 UPF0240: Uncharacteri 44.9 19 0.00042 32.1 2.7 35 75-120 113-147 (179)
38 PTZ00100 DnaJ chaperone protei 44.5 65 0.0014 27.3 5.6 53 63-122 41-97 (116)
39 PRK04374 PII uridylyl-transfer 42.8 20 0.00044 38.8 2.9 35 102-136 448-500 (869)
40 PRK13298 tRNA CCA-pyrophosphor 41.8 11 0.00024 37.8 0.7 35 103-138 228-262 (417)
41 PRK00227 glnD PII uridylyl-tra 41.7 71 0.0015 34.1 6.6 37 102-138 379-418 (693)
42 COG1418 Predicted HD superfami 41.5 31 0.00067 31.4 3.5 37 104-140 37-77 (222)
43 PRK01759 glnD PII uridylyl-tra 40.9 18 0.0004 38.8 2.3 35 102-136 435-487 (854)
44 TIGR03401 cyanamide_fam HD dom 40.6 23 0.00049 32.5 2.5 40 98-137 53-97 (228)
45 PRK03059 PII uridylyl-transfer 40.2 20 0.00044 38.6 2.5 34 103-136 440-491 (856)
46 PRK08071 L-aspartate oxidase; 35.5 40 0.00087 33.7 3.6 72 65-137 415-507 (510)
47 PF07514 TraI_2: Putative heli 35.5 15 0.00033 35.3 0.6 36 104-139 67-121 (327)
48 COG3437 Response regulator con 34.8 55 0.0012 32.7 4.3 54 81-138 167-227 (360)
49 PF04986 Y2_Tnp: Putative tran 34.0 18 0.00038 31.7 0.7 33 199-235 145-177 (183)
50 TIGR01693 UTase_glnD [Protein- 32.5 16 0.00036 38.8 0.3 16 121-136 464-479 (850)
51 TIGR01346 isocit_lyase isocitr 32.2 40 0.00086 35.2 3.0 40 99-138 386-441 (527)
52 COG1023 Gnd Predicted 6-phosph 32.0 59 0.0013 31.7 3.9 62 78-152 178-251 (300)
53 KOG2155 Tubulin-tyrosine ligas 31.1 27 0.00058 36.4 1.6 18 112-129 373-390 (631)
54 TIGR02578 cas_TM1811_Csm1 CRIS 30.8 18 0.00039 38.0 0.3 14 126-139 2-15 (648)
55 COG1713 Predicted HD superfami 30.2 45 0.00099 30.4 2.7 37 102-138 16-56 (187)
56 PRK14064 exodeoxyribonuclease 30.2 92 0.002 24.3 4.0 41 77-117 3-44 (75)
57 PF05964 FYRN: F/Y-rich N-term 28.3 23 0.00049 25.6 0.4 27 130-161 5-31 (54)
58 PF12477 TraW_N: Sex factor F 27.8 21 0.00046 23.9 0.1 12 148-159 20-31 (31)
59 PRK10119 putative hydrolase; P 27.6 98 0.0021 28.7 4.4 49 88-136 13-62 (231)
60 COG0647 NagD Predicted sugar p 27.1 1.8E+02 0.0038 27.7 6.1 100 76-195 48-171 (269)
61 cd01282 HTH_MerR-like_sg3 Heli 26.5 2.5E+02 0.0055 22.5 6.2 63 23-109 24-86 (112)
62 smart00735 ZM ZASP-like motif. 26.4 36 0.00077 21.5 1.0 15 181-195 5-19 (26)
63 PRK07804 L-aspartate oxidase; 25.8 76 0.0016 32.0 3.6 52 65-116 440-492 (541)
64 TIGR00691 spoT_relA (p)ppGpp s 25.4 67 0.0015 34.0 3.3 34 100-134 16-49 (683)
65 PF03656 Pam16: Pam16; InterP 25.3 24 0.00051 30.2 0.0 32 78-111 53-85 (127)
66 PRK14067 exodeoxyribonuclease 24.0 1.2E+02 0.0026 24.0 3.7 41 77-117 4-45 (80)
67 PF10809 DUF2732: Protein of u 23.9 1.6E+02 0.0035 23.4 4.5 62 30-91 3-64 (77)
68 PRK14068 exodeoxyribonuclease 22.6 1.4E+02 0.0031 23.3 3.9 41 77-117 3-44 (76)
69 COG1896 Predicted hydrolases o 22.0 64 0.0014 28.9 2.1 37 102-139 32-78 (193)
70 TIGR01616 nitro_assoc nitrogen 22.0 1.4E+02 0.003 25.0 4.0 55 34-91 28-84 (126)
71 KOG2681 Metal-dependent phosph 21.7 46 0.001 34.4 1.2 55 51-105 50-105 (498)
72 PRK11092 bifunctional (p)ppGpp 21.5 1.2E+02 0.0026 32.4 4.3 52 82-134 23-74 (702)
73 COG1078 HD superfamily phospho 21.0 45 0.00098 33.4 1.0 15 125-139 86-100 (421)
74 PF13446 RPT: A repeated domai 20.6 1.4E+02 0.003 21.5 3.2 29 79-112 1-29 (62)
75 PF07606 DUF1569: Protein of u 20.4 1.6E+02 0.0035 25.1 4.1 55 81-140 11-71 (152)
76 PF09279 EF-hand_like: Phospho 20.1 3.7E+02 0.008 19.9 6.3 62 67-132 4-65 (83)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=5.4e-135 Score=919.99 Aligned_cols=232 Identities=65% Similarity=1.128 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCc
Q 035614 45 RNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYW 124 (278)
Q Consensus 45 r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW 124 (278)
|++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus 4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW 83 (253)
T PF05153_consen 4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW 83 (253)
T ss_dssp -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccC
Q 035614 125 LQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWG 204 (278)
Q Consensus 125 ~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWG 204 (278)
||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+||||
T Consensus 84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg 161 (253)
T PF05153_consen 84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG 161 (253)
T ss_dssp HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHHHHHHHHHcCCccccccc---------------
Q 035614 205 HDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS--------------- 269 (278)
Q Consensus 205 HDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSK~--------------- 269 (278)
||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||
T Consensus 162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~~ 241 (253)
T PF05153_consen 162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQS 241 (253)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHHH
T ss_pred chHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccCCCCCCC
Q 035614 270 ---KYFPEKLKW 278 (278)
Q Consensus 270 ---ky~P~~l~W 278 (278)
||||++|+|
T Consensus 242 LidKy~P~~l~W 253 (253)
T PF05153_consen 242 LIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHS-S-EEE
T ss_pred HHHHHCCCcCCC
Confidence 999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=2.3e-97 Score=647.58 Aligned_cols=191 Identities=64% Similarity=1.104 Sum_probs=184.8
Q ss_pred ecCCCCCcccccccccCCCcch-hhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCC
Q 035614 20 VDGELDVPRRNAFGLDFRDFEK-ESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDP 98 (278)
Q Consensus 20 ~d~~f~~p~~~~~~~~fR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDP 98 (278)
.|--|.+|+.|+++++||+|++ +++|++||+.|||.||++||||||++||++|+||++.+||||||||+||++||||||
T Consensus 12 v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDP 91 (204)
T KOG1573|consen 12 VDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDP 91 (204)
T ss_pred ccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCC
Confidence 4556899999999999999954 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccc-cccccCCC
Q 035614 99 DLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHH-QFFKENPD 177 (278)
Q Consensus 99 D~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~-e~F~~NPD 177 (278)
|+|+|||+|||||||+||++||++||||||||||||||||. |||+||||||||||||||+|+.||||. ++|..|||
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD 168 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPD 168 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCC
Confidence 99999999999999999999999999999999999999994 589999999999999999999999996 99999999
Q ss_pred CCCccCCCCCCcccCCCCccccccccCcchhHHHHH
Q 035614 178 SRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVA 213 (278)
Q Consensus 178 ~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vl 213 (278)
.+||+|||+.|||+|+||||||+||||||||||+|+
T Consensus 169 ~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 169 INNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred CCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.10 E-value=0.00067 Score=60.38 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeeeecc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCA 161 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~ 161 (278)
|-+-..++.......----..||++|+||||...+++ |-.+=+.+.+|+||+|.++.- .+ ++
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~-Gad~elvvAALLHDIGhll~~--~~---------~~------ 65 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAA-GADDELIVAAFLHDIGHLLAD--EG---------AT------ 65 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhcchhhhc--cc---------cc------
Confidence 3344444444444322125699999999999999998 766667999999999988732 11 11
Q ss_pred cCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhccc
Q 035614 162 FDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 162 f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 232 (278)
.+..|+ .+.|++.==..|+. .+|++...+||.|.
T Consensus 66 ----------------------~~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv 99 (179)
T TIGR03276 66 ----------------------PMGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHV 99 (179)
T ss_pred ----------------------ccccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHH
Confidence 111121 22588877788876 39999999999986
No 4
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.54 E-value=0.0067 Score=44.49 Aligned_cols=38 Identities=29% Similarity=0.243 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHhh---CC--CCCchhhhhhhhccccccc
Q 035614 102 EPQIDHLLQTAEAIRRD---HP--HEYWLQLTALIHDLGKVLL 139 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d---~p--~pdW~qLtGLiHDLGKvl~ 139 (278)
.+.++|.+++|..++.- .+ +.+.+-++||+||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 45678888887776533 11 4577889999999999884
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=93.83 E-value=0.048 Score=38.77 Aligned_cols=29 Identities=21% Similarity=0.015 Sum_probs=23.1
Q ss_pred cccCcchhHHHHHhcCCCCCCccchhhhhcc
Q 035614 201 MSWGHDEYMYLVAKGNNTTLPPAGLFIIRFH 231 (278)
Q Consensus 201 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 231 (278)
...+|.+.=..+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345677777788875 47999999999998
No 6
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=93.63 E-value=0.043 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHh----hCCCCCchhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAIRR----DHPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl 138 (278)
..-.+|.+.+|...|+ -.++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 4557899988876543 236789999999999999953
No 7
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=93.49 E-value=0.023 Score=42.57 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHH---hhCC---CCCchhhhhhhhccccccc
Q 035614 105 IDHLLQTAEAIR---RDHP---HEYWLQLTALIHDLGKVLL 139 (278)
Q Consensus 105 i~H~lQTAEaiR---~d~p---~pdW~qLtGLiHDLGKvl~ 139 (278)
++|.+.+|+.++ +..+ +.+.+.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 467776665544 3334 6788999999999999983
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=92.50 E-value=0.073 Score=47.96 Aligned_cols=39 Identities=33% Similarity=0.439 Sum_probs=34.5
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhccccccc
Q 035614 100 LDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLL 139 (278)
Q Consensus 100 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~ 139 (278)
--++|.+|+||+|-..-+| |-++=+.-..|+||+|-+..
T Consensus 27 e~VTq~eHaLQ~AtlAerd-Ga~~~lVaaALLHDiGhl~~ 65 (186)
T COG4341 27 EPVTQLEHALQCATLAERD-GADTALVAAALLHDIGHLYA 65 (186)
T ss_pred CcchhhhhHHHHhHHHHhc-CCcHHHHHHHHHHhHHHHhh
Confidence 4578999999999999999 88877788899999999983
No 9
>PRK00106 hypothetical protein; Provisional
Probab=90.66 E-value=0.43 Score=48.92 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh---hC-CCCCchhhhhhhhcccccccccCCCCCCceeeecCeeee
Q 035614 83 WECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR---DH-PHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPL 158 (278)
Q Consensus 83 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~-p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpV 158 (278)
.|++.+|-.|-.-.+-+.. ...|.+.+|...+. .+ .++++.-++||+||+||++-.
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~------------------ 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDR------------------ 391 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCc------------------
Confidence 4788888776444333322 47999999887542 22 477899999999999998510
Q ss_pred ecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhccc
Q 035614 159 GCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 159 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 232 (278)
.. ..+|.+.=+.+++.. .+|++.+.+|++|-
T Consensus 392 ---------------------------------e~--------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH 422 (535)
T PRK00106 392 ---------------------------------EV--------EGSHVEIGMEFARKY--KEHPVVVNTIASHH 422 (535)
T ss_pred ---------------------------------cc--------cCChHHHHHHHHHHc--CCCHHHHHHHHHhC
Confidence 00 115888889999865 48999999999985
No 10
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=90.42 E-value=0.36 Score=40.85 Aligned_cols=127 Identities=22% Similarity=0.221 Sum_probs=70.7
Q ss_pred hcCCCCCcccHHHHHHHH--------------HhhhcCCC-CCCCc-hhHHHHHHHHHHHHhh-----CCCCCchhhhhh
Q 035614 72 YGKLDKAEMSIWECCELL--------------KNYVDESD-PDLDE-PQIDHLLQTAEAIRRD-----HPHEYWLQLTAL 130 (278)
Q Consensus 72 ~~~~~~~~MsI~EA~e~L--------------n~lvDeSD-PD~dl-~qi~H~lQTAEaiR~d-----~p~pdW~qLtGL 130 (278)
+.++.+.--||.+|+-.| ...+.... ....+ .-..|.+.+|..+++- ..++|-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556667999999877 12222222 11222 2348999988887632 234588999999
Q ss_pred hhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHH
Q 035614 131 IHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMY 210 (278)
Q Consensus 131 iHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY 210 (278)
+||+|+++++..+ |+. |-.++.- .+.++- +. =-.++-.+...|.|==.
T Consensus 127 L~~iG~l~l~~~~---~~~------~~~~~~~---------~~~~~~---~~-----------~~~e~~~~g~~h~~lg~ 174 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEY------YEEILQE---------VKQEPE---SR-----------EEAERELFGVTHAELGA 174 (196)
T ss_dssp HTTHHHHHHHHHC---HHH------HHHHHHH---------HHHHCT---HH-----------HHHHHHHHSSHHHHHHH
T ss_pred HHHHhHHHHHHHh---HHH------HHHHHHH---------HHcCCC---CH-----------HHHHHHHHcCCHHHHHH
Confidence 9999999976322 111 1111110 000000 10 11334555667777777
Q ss_pred HHHhcCCCCCCccchhhhhccc
Q 035614 211 LVAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 211 ~Vlk~n~stLP~eaL~mIRyHS 232 (278)
.++++ -.||++-...||+|-
T Consensus 175 ~l~~~--W~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 175 ALLRK--WGLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHH--TT--HHHHHHHHHTT
T ss_pred HHHHH--cCCCHHHHHHHHHHh
Confidence 77776 478998888888884
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=90.12 E-value=0.12 Score=42.54 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHh----------hCC--CCCchhhhhhhhcccccc
Q 035614 105 IDHLLQTAEAIRR----------DHP--HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 105 i~H~lQTAEaiR~----------d~p--~pdW~qLtGLiHDLGKvl 138 (278)
.+|++.||+..+. ..| .++++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 223 368999999999999986
No 12
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=88.64 E-value=0.2 Score=37.13 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHH---hhC----CCCCchhhhhhhhcccccc
Q 035614 104 QIDHLLQTAEAIR---RDH----PHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 104 qi~H~lQTAEaiR---~d~----p~pdW~qLtGLiHDLGKvl 138 (278)
...|.++++..+. +.. .+++-+-+.||+||+||..
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 3 RFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 4566665555443 321 3357788999999999987
No 13
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=81.02 E-value=1.6 Score=39.92 Aligned_cols=55 Identities=31% Similarity=0.334 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 035614 78 AEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR---DHP-HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 78 ~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGLiHDLGKvl 138 (278)
+.||-+||+++|.+.|-+ .+.+.|++.++..+|. ..| |+.=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 568889999999998854 5679999999998883 333 223335899999986444
No 14
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=80.66 E-value=2.2 Score=36.59 Aligned_cols=29 Identities=10% Similarity=-0.149 Sum_probs=23.8
Q ss_pred cCcchhHHHHHhcCCCCCCccchhhhhcccc
Q 035614 203 WGHDEYMYLVAKGNNTTLPPAGLFIIRFHSF 233 (278)
Q Consensus 203 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 233 (278)
+.|.+.=|.+|+. ..+|++.+.+|+.|.+
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~ 89 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFG 89 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhC
Confidence 3799999999986 4679999999988754
No 15
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.05 E-value=2.3 Score=43.19 Aligned_cols=88 Identities=20% Similarity=0.131 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh----hCCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeee
Q 035614 83 WECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR----DHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPL 158 (278)
Q Consensus 83 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpV 158 (278)
.|++.+|..|---+....+ ...|.+.+|...+. --.+++...++||+||+||++..
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~------------------ 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDH------------------ 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccch------------------
Confidence 4667777765322222222 46899888776442 23567888899999999997500
Q ss_pred ecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhcccc
Q 035614 159 GCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSF 233 (278)
Q Consensus 159 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 233 (278)
+ + -.+|.++=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02577888888875 3578999999999874
No 16
>PRK12705 hypothetical protein; Provisional
Probab=77.97 E-value=3.6 Score=42.15 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHhh----CCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCC
Q 035614 104 QIDHLLQTAEAIRRD----HPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSR 179 (278)
Q Consensus 104 qi~H~lQTAEaiR~d----~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~ 179 (278)
.+.|.+.+|..++.- --+++-...+||+||+||+.- +.
T Consensus 324 vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e----------------------------- 365 (508)
T PRK12705 324 VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE----------------------------- 365 (508)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh-----------------------------
Confidence 479999988866522 234577778999999999630 00
Q ss_pred CccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhcccccccc
Q 035614 180 NPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMH 237 (278)
Q Consensus 180 ~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH 237 (278)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||.
T Consensus 366 ---------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~ 399 (508)
T PRK12705 366 ---------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVN 399 (508)
T ss_pred ---------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCC
Confidence 0126888888888864 699999999999873 443
No 17
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=77.92 E-value=1.5 Score=47.41 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHH---hhCCCCCc---hhhhhhhhcccccc
Q 035614 104 QIDHLLQTAEAIR---RDHPHEYW---LQLTALIHDLGKVL 138 (278)
Q Consensus 104 qi~H~lQTAEaiR---~d~p~pdW---~qLtGLiHDLGKvl 138 (278)
.-+|+..+|+..+ +..+-++| ..+.|+.|||||.-
T Consensus 676 L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 676 LSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 4599988888776 55688888 57999999999977
No 18
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=74.55 E-value=4.1 Score=39.79 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=40.1
Q ss_pred cCCCCCcccHHHHHHHHHhh-hcCCCCCCCchhHHHHHHHHHHHH---hhC-CCCCchhhhhhhhcccccc
Q 035614 73 GKLDKAEMSIWECCELLKNY-VDESDPDLDEPQIDHLLQTAEAIR---RDH-PHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 73 ~~~~~~~MsI~EA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~-p~pdW~qLtGLiHDLGKvl 138 (278)
+|.....++.-||+++|..+ .++ ..+.|.++.|...+ +.+ .+.+=+.++||+||+||..
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~e-------~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k 226 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGASD-------LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTK 226 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 44445678999999999987 322 24788887654433 322 3555566789999999964
No 19
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=71.14 E-value=2.4 Score=41.74 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl 138 (278)
.+..+|.+.+-+.+.+- +...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l-~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKL-SPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhc-CCCHHHHHHHHhccccCCC
Confidence 35568988888777654 4445688999999999965
No 20
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=68.11 E-value=3.2 Score=39.28 Aligned_cols=28 Identities=25% Similarity=0.004 Sum_probs=23.1
Q ss_pred CcchhHHHHHhcCCCCCC-ccchhhhhccc
Q 035614 204 GHDEYMYLVAKGNNTTLP-PAGLFIIRFHS 232 (278)
Q Consensus 204 GHDEYlY~Vlk~n~stLP-~eaL~mIRyHS 232 (278)
.|.+.=+.++++ ...+| ++.+..||+|-
T Consensus 259 ~H~~~Ga~ll~~-~~~~p~~~i~~aI~~Hh 287 (342)
T PRK07152 259 LHQYVGALWLKH-VYGIDDEEILNAIRNHT 287 (342)
T ss_pred HhHHHHHHHHHH-HcCCCcHHHHHHHHhcc
Confidence 699999999976 33677 68999999987
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=65.41 E-value=14 Score=39.86 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 035614 102 EPQIDHLLQTAEAIRR------------------DHPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 136 (278)
.+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 3445788888776652 1247789999999999999
No 22
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=63.44 E-value=4.1 Score=43.05 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=85.1
Q ss_pred HHHHhhCCCCCchhhhh-hhhcccccccccCCC-CCCceeeecCeeeeec----------------ccCCcccccccccc
Q 035614 113 EAIRRDHPHEYWLQLTA-LIHDLGKVLLHPAFG-EETQWCVVGDTFPLGC----------------AFDNNIVHHQFFKE 174 (278)
Q Consensus 113 EaiR~d~p~pdW~qLtG-LiHDLGKvl~l~~f~-~epQW~vvGDTfpVGC----------------~f~~~iv~~e~F~~ 174 (278)
..+.+| +.|-|+.=-| | .|-+.|.|- .---|-=-|-+|++.| +.....||.+||.-
T Consensus 414 K~~~~d-~~pTll~aYGGF-----~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AV 487 (648)
T COG1505 414 KGAKKD-ENPTLLYAYGGF-----NISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAV 487 (648)
T ss_pred cCCcCC-CCceEEEecccc-----ccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHH
Confidence 444556 6666654333 1 122234432 1124666677777755 34678899999988
Q ss_pred CCCCCCccCCC--CCCcccC-CCCcc-ccccccCcchhHHHHHhcCCCCCCccchhhhhccccccccc-cccccccCChh
Q 035614 175 NPDSRNPAFNT--KLGIYSE-NIGLD-NITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHR-HGAYTFLMNDE 249 (278)
Q Consensus 175 NPD~~~p~YnT--~~GiY~~-~CGLd-nV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~-~gaY~hL~n~~ 249 (278)
--|-....|.| +.||+-. |=||= -|.|. ...|=+=-++- =-.-|.|||||-|++=-+ -+.| =|++
T Consensus 488 aedLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPelfgA~v~------evPllDMlRYh~l~aG~sW~~EY---G~Pd 557 (648)
T COG1505 488 AEDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPELFGAAVC------EVPLLDMLRYHLLTAGSSWIAEY---GNPD 557 (648)
T ss_pred HHHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChhhhCceee------ccchhhhhhhcccccchhhHhhc---CCCC
Confidence 88887777766 5677753 34432 22222 33443222221 123589999999986111 2334 3889
Q ss_pred hHHHHHHHHHcCCccccccc-ccCC
Q 035614 250 DKEMLKWLQVFNKYDLYSKS-KYFP 273 (278)
Q Consensus 250 D~~~l~wv~~Fn~yDLYSK~-ky~P 273 (278)
|.+.++|+.++.||-=-+-. ||=|
T Consensus 558 ~P~d~~~l~~YSPy~nl~~g~kYP~ 582 (648)
T COG1505 558 DPEDRAFLLAYSPYHNLKPGQKYPP 582 (648)
T ss_pred CHHHHHHHHhcCchhcCCccccCCC
Confidence 99999999999998655543 5533
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=61.95 E-value=5.8 Score=37.77 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHhh-hcCCCCCCCchhHHHHHHHHHHHH---hhCCCC----Cchhhhhhhhccccccc
Q 035614 88 LLKNY-VDESDPDLDEPQIDHLLQTAEAIR---RDHPHE----YWLQLTALIHDLGKVLL 139 (278)
Q Consensus 88 ~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p~p----dW~qLtGLiHDLGKvl~ 139 (278)
.+... ++..|+.| -.|...+|+-.+ +.-|-+ ..+-+.||+||+||+-.
T Consensus 136 ~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 136 ALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 33443 77777766 678888776544 333433 35678999999999983
No 24
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=61.50 E-value=7.9 Score=37.25 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhCCCC--CchhhhhhhhcccccccccCCCCCCceeeecCee
Q 035614 107 HLLQTAEAIRRDHPHE--YWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTF 156 (278)
Q Consensus 107 H~lQTAEaiR~d~p~p--dW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTf 156 (278)
=+++.|.++-+-||-- |=++..+.+||+||++-+..- ..+.|+|-|+-.
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~-~~~~yt~~g~li 198 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGP-EATEYTVRGNLI 198 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCc-ccccceecccee
Confidence 3566677776666644 778889999999999976333 345777777643
No 25
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=61.10 E-value=21 Score=29.59 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=44.1
Q ss_pred hhhhccHHHHHHHHHHhcC--CCCCcccHHHHHHHHHh------hhcCCCCCCCchhHHHHHHHHHH
Q 035614 56 NHIYQTCEFANKKKEEYGK--LDKAEMSIWECCELLKN------YVDESDPDLDEPQIDHLLQTAEA 114 (278)
Q Consensus 56 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln~------lvDeSDPD~dl~qi~H~lQTAEa 114 (278)
..+.|+.++|.+..++|+- .|+.+-+|-||-..|-. ||++. +-|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3467889999999999984 66899999999999853 56542 23788999999985
No 26
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=60.18 E-value=4.7 Score=38.75 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=74.7
Q ss_pred HHHhcCCCCCcccHHHHHHHH-----Hhhhc-------CCCCCCCchhH----HHHHHHHHHHH---hhC--CCCCchhh
Q 035614 69 KEEYGKLDKAEMSIWECCELL-----KNYVD-------ESDPDLDEPQI----DHLLQTAEAIR---RDH--PHEYWLQL 127 (278)
Q Consensus 69 ~~~~~~~~~~~MsI~EA~e~L-----n~lvD-------eSDPD~dl~qi----~H~lQTAEaiR---~d~--p~pdW~qL 127 (278)
-.-|..+++.--||-||+..| -+||= -+.|+..--+. ++++.||-.|+ ++. ++.+=.-+
T Consensus 66 NS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~ 145 (289)
T COG1639 66 NSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAYT 145 (289)
T ss_pred cchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 345778889899999998876 12221 12232222222 55555655443 333 46678889
Q ss_pred hhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcch
Q 035614 128 TALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDE 207 (278)
Q Consensus 128 tGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDE 207 (278)
+||+|.+|+|+++..| |+|.- +.|.. -..|+|-.. .+-+ .+--.+|-+
T Consensus 146 ~gLLh~lG~l~ll~~~---~~~~~------~~~~~---------~~~~~~~~~-~~~e-------------~~~i~~h~~ 193 (289)
T COG1639 146 AGLLHNLGILVLLTDF---PDHCE------LLDYL---------LALNNDELL-ALDE-------------ELGIFGHAS 193 (289)
T ss_pred HHHHHHccHHHHHHHh---HHHHH------HHHHH---------HHhccCccc-chHH-------------HhccccchH
Confidence 9999999999988444 44532 23322 223333211 1112 222223666
Q ss_pred hHHHHHhcCCCCCCccchhhhhcccc
Q 035614 208 YMYLVAKGNNTTLPPAGLFIIRFHSF 233 (278)
Q Consensus 208 YlY~Vlk~n~stLP~eaL~mIRyHSF 233 (278)
--+.+++.- .+|.+-...||+|-=
T Consensus 194 Iga~llr~W--~fp~~l~e~i~~~~~ 217 (289)
T COG1639 194 IGAYLLRRW--NFPDDLIEAIRFHHN 217 (289)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Confidence 667777654 677777777777753
No 27
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=59.45 E-value=6.8 Score=35.76 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=12.1
Q ss_pred hhhhhhhhccccccc
Q 035614 125 LQLTALIHDLGKVLL 139 (278)
Q Consensus 125 ~qLtGLiHDLGKvl~ 139 (278)
+-.+||+||+||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 455689999999974
No 28
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=57.96 E-value=6.4 Score=37.82 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCCC--Cchhhhhhhhcccccccc
Q 035614 108 LLQTAEAIRRDHPHE--YWLQLTALIHDLGKVLLH 140 (278)
Q Consensus 108 ~lQTAEaiR~d~p~p--dW~qLtGLiHDLGKvl~l 140 (278)
++++|.++-..||.- |=+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 344455555557744 445555599999999965
No 29
>PRK05092 PII uridylyl-transferase; Provisional
Probab=55.18 E-value=7.4 Score=41.96 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhh------------------CCCCCchhhhhhhhcccc
Q 035614 106 DHLLQTAEAIRRD------------------HPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 106 ~H~lQTAEaiR~d------------------~p~pdW~qLtGLiHDLGK 136 (278)
+|.++|-+.+++- -++|+.+-|++|+||+||
T Consensus 496 ~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 496 EHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 6888877766531 155788999999999999
No 30
>PRK12704 phosphodiesterase; Provisional
Probab=53.72 E-value=17 Score=37.24 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHH---hhC-CCCCchhhhhhhhcccccc
Q 035614 83 WECCELLKNYVDESDPDLDEPQIDHLLQTAEAIR---RDH-PHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 83 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR---~d~-p~pdW~qLtGLiHDLGKvl 138 (278)
.+++.+|..| .-.|+.+. ....|.+.+|-..+ +.. .+++-.-++||+||+||+.
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 3566667666 33444432 24578877665543 222 3567778999999999984
No 31
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.26 E-value=13 Score=34.09 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhC
Q 035614 75 LDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH 119 (278)
Q Consensus 75 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~ 119 (278)
..+++.||-||+++||. -..+|.+ ||||-|-..|
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 34688999999999998 5555766 7899998874
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=52.08 E-value=10 Score=40.22 Aligned_cols=34 Identities=38% Similarity=0.457 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHH---HhhCCCCCchhhhhhhhcccc
Q 035614 103 PQIDHLLQTAEAI---RRDHPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 103 ~qi~H~lQTAEai---R~d~p~pdW~qLtGLiHDLGK 136 (278)
+.-+|.+.+-+.+ ...-..|+.+-|++|+||+||
T Consensus 420 tVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 420 TVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 4456888775544 333356789999999999999
No 33
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=51.83 E-value=63 Score=32.15 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHhhCC-CCC-chhhhhhhhccccccc
Q 035614 102 EPQIDHLLQTAEAIRRDHP-HEY-WLQLTALIHDLGKVLL 139 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d~p-~pd-W~qLtGLiHDLGKvl~ 139 (278)
.+...|.+++-+.+.+-.. .++ .+.|++|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 4667899988777654311 234 6899999999999653
No 34
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=48.87 E-value=17 Score=30.20 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 035614 88 LLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDL 134 (278)
Q Consensus 88 ~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 134 (278)
+--+....--.++..|-|.|++++|+.+..- +-..=...+||+||.
T Consensus 4 ~A~~~h~~~~~~~g~py~~H~~~va~~l~~~-~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 4 FAAEAHAGQRRKSGEPYISHPLEVAEILAEL-GLDEETIAAALLHDV 49 (153)
T ss_dssp HHHHHTTT-B-ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred HHHHHHhcccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHhhheeecH
Confidence 3333333333456688999999999999554 433336788899984
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=47.19 E-value=11 Score=35.84 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=58.6
Q ss_pred HHHHHHHHhhC--CCCCchhhhhhhhccccccc--ccCCCCCCceeeecCeeeeecccCCc-cccccccccCCCC-CCcc
Q 035614 109 LQTAEAIRRDH--PHEYWLQLTALIHDLGKVLL--HPAFGEETQWCVVGDTFPLGCAFDNN-IVHHQFFKENPDS-RNPA 182 (278)
Q Consensus 109 lQTAEaiR~d~--p~pdW~qLtGLiHDLGKvl~--l~~f~~epQW~vvGDTfpVGC~f~~~-iv~~e~F~~NPD~-~~p~ 182 (278)
|.+||.+++++ +.+-|-+..-..--+-.|.. +...+.++-|-|.|. |.++-. -+|.+.|+.|--- ++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-----c~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-----CMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-----ccCccHHHHHHHHhccccccCCCcc
Confidence 78999999998 77789988887766666653 444556667777663 777643 4577777887655 7899
Q ss_pred CCCCCCcccC
Q 035614 183 FNTKLGIYSE 192 (278)
Q Consensus 183 YnT~~GiY~~ 192 (278)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999654
No 36
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=46.24 E-value=12 Score=40.39 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHhh------------------CCCCCchhhhhhhhccccc
Q 035614 102 EPQIDHLLQTAEAIRRD------------------HPHEYWLQLTALIHDLGKV 137 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGLiHDLGKv 137 (278)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 34457888887776541 1256799999999999993
No 37
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=44.91 E-value=19 Score=32.11 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=28.1
Q ss_pred CCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCC
Q 035614 75 LDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHP 120 (278)
Q Consensus 75 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p 120 (278)
..++++||.||+++|++.- .||.+ .|||+|-++|.
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY~ 147 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEYK 147 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHhC
Confidence 4579999999999999754 55665 46999999975
No 38
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=44.52 E-value=65 Score=27.28 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcC--CC--CCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCC
Q 035614 63 EFANKKKEEYGK--LD--KAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHE 122 (278)
Q Consensus 63 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~p 122 (278)
.|+..+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||.
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPDk 97 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPDN 97 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Confidence 467778777744 43 468999999999983 34555666655544 4455557764
No 39
>PRK04374 PII uridylyl-transferase; Provisional
Probab=42.77 E-value=20 Score=38.78 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 035614 102 EPQIDHLLQTAEAIRR------------------DHPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 136 (278)
.+.-+|.+.+-+.+++ ....|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 3556788877665542 1145789999999999999
No 40
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=41.85 E-value=11 Score=37.83 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccc
Q 035614 103 PQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 103 ~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl 138 (278)
....|.+.+-..+.+. +..-.+-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~-~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKL-TKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhcCCC
Confidence 3456777666666544 4445688899999999975
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=41.70 E-value=71 Score=34.13 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHhh---CCCCCchhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAIRRD---HPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d---~p~pdW~qLtGLiHDLGKvl 138 (278)
.+.-+|.++|.+.+.+. -..|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 35567999998866432 25677788999999999954
No 42
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=41.48 E-value=31 Score=31.42 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=25.9
Q ss_pred hHHHHHHH---HHHHHhhC-CCCCchhhhhhhhcccccccc
Q 035614 104 QIDHLLQT---AEAIRRDH-PHEYWLQLTALIHDLGKVLLH 140 (278)
Q Consensus 104 qi~H~lQT---AEaiR~d~-p~pdW~qLtGLiHDLGKvl~l 140 (278)
.+.|.+.+ |..|-+.. .|++=....||+||+||..-.
T Consensus 37 ~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 37 VLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 45666655 44555443 567778889999999999843
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=40.93 E-value=18 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 035614 102 EPQIDHLLQTAEAIRR------------------DHPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 136 (278)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4556788888776532 1256788999999999999
No 44
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=40.56 E-value=23 Score=32.52 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=26.8
Q ss_pred CCCCchhHHHHHHHHHHHHhh-----CCCCCchhhhhhhhccccc
Q 035614 98 PDLDEPQIDHLLQTAEAIRRD-----HPHEYWLQLTALIHDLGKV 137 (278)
Q Consensus 98 PD~dl~qi~H~lQTAEaiR~d-----~p~pdW~qLtGLiHDLGKv 137 (278)
|+-++.-+...+.+|.+|-+. -.+++=+-+++|+||+|+.
T Consensus 53 ~~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 53 PPETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred CHhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 344455566666677777442 1455667889999999985
No 45
>PRK03059 PII uridylyl-transferase; Provisional
Probab=40.24 E-value=20 Score=38.59 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 035614 103 PQIDHLLQTAEAIRR------------------DHPHEYWLQLTALIHDLGK 136 (278)
Q Consensus 103 ~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 136 (278)
+.-+|.+.|-+.+++ +-.+++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 445798888777643 1124688999999999999
No 46
>PRK08071 L-aspartate oxidase; Provisional
Probab=35.53 E-value=40 Score=33.65 Aligned_cols=72 Identities=28% Similarity=0.435 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhh-cCC--CCC---CCchhHHHHHHHHHHH---------------HhhCCCCC
Q 035614 65 ANKKKEEYGKLDKAEMSIWECCELLKNYV-DES--DPD---LDEPQIDHLLQTAEAI---------------RRDHPHEY 123 (278)
Q Consensus 65 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lv-DeS--DPD---~dl~qi~H~lQTAEai---------------R~d~p~pd 123 (278)
.++...+|....|.+-.+.+|+..|+.|- .+. +.+ .+.-.+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566778788888899999999999884 221 111 1223456888899886 44578777
Q ss_pred chhhhhhhhccccc
Q 035614 124 WLQLTALIHDLGKV 137 (278)
Q Consensus 124 W~qLtGLiHDLGKv 137 (278)
|...+ ++-.-||+
T Consensus 495 ~~~~~-~~~~~~~~ 507 (510)
T PRK08071 495 WRGKE-IVRTKRKL 507 (510)
T ss_pred cCceE-EEecCCce
Confidence 85544 44444444
No 47
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=35.47 E-value=15 Score=35.28 Aligned_cols=36 Identities=44% Similarity=0.715 Sum_probs=24.1
Q ss_pred hHHHHHHHHH-HHHhhC----C-----------CCCch---hhhhhhhccccccc
Q 035614 104 QIDHLLQTAE-AIRRDH----P-----------HEYWL---QLTALIHDLGKVLL 139 (278)
Q Consensus 104 qi~H~lQTAE-aiR~d~----p-----------~pdW~---qLtGLiHDLGKvl~ 139 (278)
-+.|.|++|. |+|-.. | .+.|- -++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3688888774 444321 1 34674 46789999999775
No 48
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=34.76 E-value=55 Score=32.71 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhhhcCCCCCCCchhHHHHHHH---HHHHHhhCCC----CCchhhhhhhhcccccc
Q 035614 81 SIWECCELLKNYVDESDPDLDEPQIDHLLQT---AEAIRRDHPH----EYWLQLTALIHDLGKVL 138 (278)
Q Consensus 81 sI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQT---AEaiR~d~p~----pdW~qLtGLiHDLGKvl 138 (278)
...+.++.|..++..-|+.| -.|+..+ ++++-+.++- -|=++++|.+||+|||-
T Consensus 167 ~~~~t~~~L~~~~E~R~~et----g~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 167 NLDETLEELAALLEVRDYET----GDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHHHhcccch----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 33478888888887777766 3455444 3444333332 26688999999999996
No 49
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=34.04 E-value=18 Score=31.74 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=30.3
Q ss_pred cccccCcchhHHHHHhcCCCCCCccchhhhhcccccc
Q 035614 199 ITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYA 235 (278)
Q Consensus 199 V~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 235 (278)
..|...-+|+|-+++.+ +|+.+.-||||+=||.
T Consensus 145 ~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 145 KTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 56777899999999987 9999999999999987
No 50
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=32.45 E-value=16 Score=38.83 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=14.3
Q ss_pred CCCchhhhhhhhcccc
Q 035614 121 HEYWLQLTALIHDLGK 136 (278)
Q Consensus 121 ~pdW~qLtGLiHDLGK 136 (278)
+++-+-|++|+||+||
T Consensus 464 ~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 464 DPELLYLAALLHDIGK 479 (850)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4678899999999999
No 51
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=32.20 E-value=40 Score=35.19 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCC----------Cc------hhhhhhhhcccccc
Q 035614 99 DLDEPQIDHLLQTAEAIRRDHPHE----------YW------LQLTALIHDLGKVL 138 (278)
Q Consensus 99 D~dl~qi~H~lQTAEaiR~d~p~p----------dW------~qLtGLiHDLGKvl 138 (278)
.|+.|.+..+-+.||+||+.||+. .| =++-.|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 567889999999999999999865 34 36788999999943
No 52
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=32.03 E-value=59 Score=31.67 Aligned_cols=62 Identities=26% Similarity=0.301 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCCchhHHH------------HHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCC
Q 035614 78 AEMSIWECCELLKNYVDESDPDLDEPQIDH------------LLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGE 145 (278)
Q Consensus 78 ~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H------------~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~~ 145 (278)
.+-.+|+|+-.=-+|+.+|.=|.|++++-- |=-||||.|++ | |-=|+.|-+||- +
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~dS----------G 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSDS----------G 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeeccC----------C
Confidence 456778877666677778989999998743 33589999999 7 555777777763 6
Q ss_pred CCceeee
Q 035614 146 ETQWCVV 152 (278)
Q Consensus 146 epQW~vv 152 (278)
|+.|+|.
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 6778774
No 53
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.13 E-value=27 Score=36.42 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCchhhhh
Q 035614 112 AEAIRRDHPHEYWLQLTA 129 (278)
Q Consensus 112 AEaiR~d~p~pdW~qLtG 129 (278)
|+-+|+++|.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999984
No 54
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=30.83 E-value=18 Score=37.98 Aligned_cols=14 Identities=50% Similarity=0.921 Sum_probs=12.2
Q ss_pred hhhhhhhccccccc
Q 035614 126 QLTALIHDLGKVLL 139 (278)
Q Consensus 126 qLtGLiHDLGKvl~ 139 (278)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 47789999999994
No 55
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=30.24 E-value=45 Score=30.41 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHhh---C-CCCCchhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAIRRD---H-PHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d---~-p~pdW~qLtGLiHDLGKvl 138 (278)
.+-++|.+..||+.++- | -++.=--++|+.||++|-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 45789998777776642 3 2334488999999999987
No 56
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.22 E-value=92 Score=24.29 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHhhhcCC-CCCCCchhHHHHHHHHHHHHh
Q 035614 77 KAEMSIWECCELLKNYVDES-DPDLDEPQIDHLLQTAEAIRR 117 (278)
Q Consensus 77 ~~~MsI~EA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~ 117 (278)
+.++|.-+|+..|.++|..- ++++.|.+..-+|+.+-++-+
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k 44 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK 44 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45689999999999998875 668999999888887766544
No 57
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=28.28 E-value=23 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=15.0
Q ss_pred hhhcccccccccCCCCCCceeeecCeeeeecc
Q 035614 130 LIHDLGKVLLHPAFGEETQWCVVGDTFPLGCA 161 (278)
Q Consensus 130 LiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~ 161 (278)
.||.||+|... .|.|...-=.||+|-.
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy~ 31 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGYK 31 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCEE
Confidence 57999999943 3567777779999965
No 58
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=27.82 E-value=21 Score=23.87 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.0
Q ss_pred ceeeecCeeeee
Q 035614 148 QWCVVGDTFPLG 159 (278)
Q Consensus 148 QW~vvGDTfpVG 159 (278)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 345679999986
No 59
>PRK10119 putative hydrolase; Provisional
Probab=27.56 E-value=98 Score=28.66 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=36.9
Q ss_pred HHHhhhcCCCCCCCchhHHHHHHHHHHHHhhC-CCCCchhhhhhhhcccc
Q 035614 88 LLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH-PHEYWLQLTALIHDLGK 136 (278)
Q Consensus 88 ~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGLiHDLGK 136 (278)
...+.....||-=|+.-|....++|..|-+.. .+..-+.|++++||+|-
T Consensus 13 ~v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 13 WLKNHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 33344455688888888888899999986553 36678889999999974
No 60
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=27.14 E-value=1.8e+02 Score=27.67 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=57.9
Q ss_pred CCCcccHHHHHHHHHhh-hcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCC-----CCCce
Q 035614 76 DKAEMSIWECCELLKNY-VDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFG-----EETQW 149 (278)
Q Consensus 76 ~~~~MsI~EA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~-----~epQW 149 (278)
|....|-.+..+.|..+ .-+..||. -+.=..-||+.|++.+|- +||+.+-.=+ ..-.|
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~~~~~~~---i~TS~~at~~~l~~~~~~-------------~kv~viG~~~l~~~l~~~G~ 111 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGVDVTPDD---IVTSGDATADYLAKQKPG-------------KKVYVIGEEGLKEELEGAGF 111 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCCCCCHHH---eecHHHHHHHHHHhhCCC-------------CEEEEECCcchHHHHHhCCc
Confidence 45666666677777773 22222221 134566778888887552 4555430000 11245
Q ss_pred eeecCeee-----eecccCCcccccc-------------ccccCCCCCCccCCCCCCcccCCCC
Q 035614 150 CVVGDTFP-----LGCAFDNNIVHHQ-------------FFKENPDSRNPAFNTKLGIYSENIG 195 (278)
Q Consensus 150 ~vvGDTfp-----VGC~f~~~iv~~e-------------~F~~NPD~~~p~YnT~~GiY~~~CG 195 (278)
.++++.=+ |++..++.+.|.. |+..|||.. ..|+.| +.|+||
T Consensus 112 ~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~pgaG 171 (269)
T COG0647 112 ELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRPGAG 171 (269)
T ss_pred EEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-CccCcH
Confidence 55554444 6666677666644 677899984 556777 888887
No 61
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.46 E-value=2.5e+02 Score=22.49 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCCcccccccccCCCcchhhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCc
Q 035614 23 ELDVPRRNAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDE 102 (278)
Q Consensus 23 ~f~~p~~~~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl 102 (278)
|+.+|..+ ...+|.|+... |. ++.+++..| ...||+-|.-++|+...+..++....
T Consensus 24 GLl~p~r~--~~g~R~Y~~~~-----~~----------~l~~I~~lr-------~~G~sl~eI~~~l~~~~~~~~~~~~~ 79 (112)
T cd01282 24 GLLVPERS--ANGYRDYDEAA-----VD----------RVRQIRRLL-------AAGLTLEEIREFLPCLRGGEPTFRPC 79 (112)
T ss_pred CCCCCCcC--CCCCeecCHHH-----HH----------HHHHHHHHH-------HcCCCHHHHHHHHHHhhCCCccCCcc
Confidence 66677544 34799998532 22 223333333 24588888887777644433333444
Q ss_pred hhHHHHH
Q 035614 103 PQIDHLL 109 (278)
Q Consensus 103 ~qi~H~l 109 (278)
+++..++
T Consensus 80 ~~~~~~l 86 (112)
T cd01282 80 PDLLAVL 86 (112)
T ss_pred HHHHHHH
Confidence 5554444
No 62
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=26.41 E-value=36 Score=21.48 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.4
Q ss_pred ccCCCCCCcccCCCC
Q 035614 181 PAFNTKLGIYSENIG 195 (278)
Q Consensus 181 p~YnT~~GiY~~~CG 195 (278)
.-||++-|+|+++=+
T Consensus 5 ~qyn~P~glys~~n~ 19 (26)
T smart00735 5 KQYNSPIGLYSSENI 19 (26)
T ss_pred cccCCCCCCCCcccH
Confidence 569999999988754
No 63
>PRK07804 L-aspartate oxidase; Provisional
Probab=25.82 E-value=76 Score=31.99 Aligned_cols=52 Identities=8% Similarity=-0.042 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCC-CCchhHHHHHHHHHHHH
Q 035614 65 ANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPD-LDEPQIDHLLQTAEAIR 116 (278)
Q Consensus 65 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD-~dl~qi~H~lQTAEaiR 116 (278)
.++...+|...-|.+-++.+|++.|+.+....+.+ .....+.+++.+||+|-
T Consensus 440 l~~~m~~~~gi~R~~~~L~~al~~l~~~~~~~~~~~~~~~e~~~~l~~a~~~~ 492 (541)
T PRK07804 440 LQRAMTRGAGVLRSAAGLARAADRLAAGAPARVVPGRADWEDTNLTLVARALV 492 (541)
T ss_pred HHHHHHhcCCeEEcHHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH
Confidence 44456677777899999999999998865332221 22335688999999863
No 64
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=25.35 E-value=67 Score=33.99 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 035614 100 LDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDL 134 (278)
Q Consensus 100 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 134 (278)
...|-|.|.+++|+.+..-..+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 457889999999999986523222 4668999996
No 65
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=25.29 E-value=24 Score=30.18 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred CcccHHHHHHHHHhhhcC-CCCCCCchhHHHHHHH
Q 035614 78 AEMSIWECCELLKNYVDE-SDPDLDEPQIDHLLQT 111 (278)
Q Consensus 78 ~~MsI~EA~e~Ln~lvDe-SDPD~dl~qi~H~lQT 111 (278)
..||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 53 ~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 4799999999999 444 3332222334666654
No 66
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.01 E-value=1.2e+02 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=32.9
Q ss_pred CCcccHHHHHHHHHhhhcCC-CCCCCchhHHHHHHHHHHHHh
Q 035614 77 KAEMSIWECCELLKNYVDES-DPDLDEPQIDHLLQTAEAIRR 117 (278)
Q Consensus 77 ~~~MsI~EA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~ 117 (278)
...+|.-+|++.|.++|..- ++++.|.+..-+++-+-++-+
T Consensus 4 ~k~~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k 45 (80)
T PRK14067 4 KKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLAR 45 (80)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45689999999999998775 778999999888877655433
No 67
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=23.94 E-value=1.6e+02 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=44.6
Q ss_pred ccccccCCCcchhhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 035614 30 NAFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKN 91 (278)
Q Consensus 30 ~~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~ 91 (278)
|.+...+....++.....-..+-=.+-++.|...|..+..+==......+||--||+|+|..
T Consensus 3 n~e~~~~~~~~d~~~l~~lL~~AR~eeRk~~A~~~S~RL~~LA~hi~~~~ls~~E~~ELLrq 64 (77)
T PF10809_consen 3 NTETRSMKTGADAASLNELLNKARMEERKDRADAFSSRLDALAAHIANEELSAVEAAELLRQ 64 (77)
T ss_pred cchhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 45544555555432345566777778889999999887766655666789999999999975
No 68
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.58 E-value=1.4e+02 Score=23.34 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHHHhhhcC-CCCCCCchhHHHHHHHHHHHHh
Q 035614 77 KAEMSIWECCELLKNYVDE-SDPDLDEPQIDHLLQTAEAIRR 117 (278)
Q Consensus 77 ~~~MsI~EA~e~Ln~lvDe-SDPD~dl~qi~H~lQTAEaiR~ 117 (278)
+.++|.-+|++.|.++|.. .++|++|.+..-+++.+-++-+
T Consensus 3 ~~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 3 KETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3578999999999998876 4678999999888887766544
No 69
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=22.01 E-value=64 Score=28.89 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=25.8
Q ss_pred chhHHHHHHHH-------HHHHhhCC---CCCchhhhhhhhccccccc
Q 035614 102 EPQIDHLLQTA-------EAIRRDHP---HEYWLQLTALIHDLGKVLL 139 (278)
Q Consensus 102 l~qi~H~lQTA-------EaiR~d~p---~pdW~qLtGLiHDLGKvl~ 139 (278)
.+..+|+|++| ....+ .| ++.=..+.+|+||++.++.
T Consensus 32 eSvaeHs~~va~la~~la~~~~~-~~~~vn~~k~~~~AL~HD~~E~~~ 78 (193)
T COG1896 32 ESVAEHSFRVAILALLLADILNA-KGGEVNPEKVALMALVHDLPEALT 78 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-cccccCHHHHHHHHHhcccHHHHh
Confidence 66778888776 23333 45 3444677899999999984
No 70
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.00 E-value=1.4e+02 Score=24.98 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=38.2
Q ss_pred ccCCCcchhhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCC--CCcccHHHHHHHHHh
Q 035614 34 LDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLD--KAEMSIWECCELLKN 91 (278)
Q Consensus 34 ~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~--~~~MsI~EA~e~Ln~ 91 (278)
-+||+|-..+.-.+.++.+.... -.-+.+.+.-..|.+++ ...||.-|++++|-+
T Consensus 28 ~~~~d~~~~p~t~~eL~~~l~~~---g~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~ 84 (126)
T TIGR01616 28 VEVQDILKEPWHADTLRPYFGNK---PVGSWFNRAAPRVKSGEVNPDSIDEASALALMVS 84 (126)
T ss_pred cEEEeccCCCcCHHHHHHHHHHc---CHHHHHhccchHhhhCCCCcccCCHHHHHHHHHh
Confidence 37999987666677888888864 35567777777775544 456777777776654
No 71
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=21.67 E-value=46 Score=34.42 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=32.3
Q ss_pred HHHHHhhhhccHH-HHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhH
Q 035614 51 ECYRKNHIYQTCE-FANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQI 105 (278)
Q Consensus 51 ~fYr~~H~~QTvd-fv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi 105 (278)
+|-|+-|.+|+-= +..=..+.-..|.|.-=+-|=|=++++.|=--|-|..-+++.
T Consensus 50 ~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~ 105 (498)
T KOG2681|consen 50 LFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEV 105 (498)
T ss_pred HHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHH
Confidence 4667777777521 111122233334454556677888888888788787766544
No 72
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=21.53 E-value=1.2e+02 Score=32.42 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDL 134 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 134 (278)
+..|+++-.+.....-.....|-|.|.+++|+.+..-.-+++ ...+||+||.
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-ti~AaLLHDv 74 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYE-TLMAALLHDV 74 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHH-HHHHhcccch
Confidence 445665554443322223456778999999999875422222 4667899987
No 73
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=21.00 E-value=45 Score=33.40 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=11.9
Q ss_pred hhhhhhhhccccccc
Q 035614 125 LQLTALIHDLGKVLL 139 (278)
Q Consensus 125 ~qLtGLiHDLGKvl~ 139 (278)
.+++||+||+|---+
T Consensus 86 ~~~AALLHDIGHgPF 100 (421)
T COG1078 86 VRLAALLHDIGHGPF 100 (421)
T ss_pred HHHHHHHHccCCCcc
Confidence 577899999997664
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=20.62 E-value=1.4e+02 Score=21.52 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHH
Q 035614 79 EMSIWECCELLKNYVDESDPDLDEPQIDHLLQTA 112 (278)
Q Consensus 79 ~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTA 112 (278)
.|++-+|++.|.- +|+++-..|.-++|+.
T Consensus 1 ~~~~~~Ay~~Lgi-----~~~~~Dd~Ii~~f~~~ 29 (62)
T PF13446_consen 1 YMDVEEAYEILGI-----DEDTDDDFIISAFQSK 29 (62)
T ss_pred CCCHHHHHHHhCc-----CCCCCHHHHHHHHHHH
Confidence 4999999999973 5666666777777654
No 75
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=20.44 E-value=1.6e+02 Score=25.12 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhhhcCCCCC---CCchhH-HHHHHHHHHHHhhCC--CCCchhhhhhhhcccccccc
Q 035614 81 SIWECCELLKNYVDESDPD---LDEPQI-DHLLQTAEAIRRDHP--HEYWLQLTALIHDLGKVLLH 140 (278)
Q Consensus 81 sI~EA~e~Ln~lvDeSDPD---~dl~qi-~H~lQTAEaiR~d~p--~pdW~qLtGLiHDLGKvl~l 140 (278)
++-|++.-|+.|..++-|- -++.|| .|+-|+=|..-..+| .|-||. .-+||+++.
T Consensus 11 ~l~e~~~ri~~L~~~~~~~wGkms~~Qml~Hc~~~~~~s~~g~~~~k~~~~~-----~~lgk~~~~ 71 (152)
T PF07606_consen 11 DLDEIINRINRLTPDTQPQWGKMSVSQMLAHCAQSIEMSMEGYPFPKPAWFR-----RTLGKLAFK 71 (152)
T ss_pred CHHHHHHHHHHhCcCCCCCcCCcCHHHHHHHHHHHHHHHhcCCCCCccHHHH-----HHHHHHHHH
Confidence 5669999999999888885 456666 899998888765544 444665 447888754
No 76
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=20.10 E-value=3.7e+02 Score=19.86 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhh
Q 035614 67 KKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIH 132 (278)
Q Consensus 67 ~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiH 132 (278)
..=.+|.+ +...||+-+=.+.|++-- .+|..+..++..+++.=|...+. ....-|-+-||++
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~eQ--~~~~~~~~~~~~li~~~~~~~~~-~~~~~lt~~gF~~ 65 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLREEQ--GEPRLTDEQAKELIEKFEPDERN-RQKGQLTLEGFTR 65 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHHTS--S-TTSSHHHHHHHHHHHHHHHHH-HCTTEEEHHHHHH
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHHHh--ccccCcHHHHHHHHHHHccchhh-cccCCcCHHHHHH
Confidence 34567877 889999999999987643 45556777888887775544332 2336677777654
Done!