Query 035614
Match_columns 278
No_of_seqs 130 out of 210
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 4E-138 2E-142 952.0 14.8 256 19-278 10-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 4E-127 1E-131 867.1 12.0 229 47-278 3-250 (250)
3 3ccg_A HD superfamily hydrolas 94.0 0.033 1.1E-06 46.5 3.3 52 80-138 3-58 (190)
4 2o08_A BH1327 protein; putativ 94.0 0.037 1.3E-06 46.1 3.5 52 80-138 2-57 (188)
5 2ogi_A Hypothetical protein SA 93.5 0.047 1.6E-06 46.0 3.4 53 79-138 9-65 (196)
6 3hc1_A Uncharacterized HDOD do 91.7 0.15 5.2E-06 45.4 4.4 130 74-238 74-223 (305)
7 3ljx_A MMOQ response regulator 91.3 0.16 5.5E-06 45.0 4.1 125 72-232 61-206 (288)
8 3i7a_A Putative metal-dependen 90.3 0.29 1E-05 42.9 4.8 120 71-233 68-215 (281)
9 2qgs_A Protein Se1688; alpha-h 88.1 0.39 1.3E-05 41.3 3.9 52 82-136 7-63 (225)
10 3djb_A Hydrolase, HD family; a 85.4 0.66 2.3E-05 40.4 3.9 56 82-137 7-63 (223)
11 3m1t_A Putative phosphohydrola 85.1 0.56 1.9E-05 41.2 3.3 123 74-232 62-203 (275)
12 3b57_A LIN1889 protein; Q92AN1 83.9 0.8 2.7E-05 38.8 3.6 55 84-138 9-64 (209)
13 2pjq_A Uncharacterized protein 83.3 0.58 2E-05 40.5 2.6 57 80-136 10-67 (231)
14 3dto_A BH2835 protein; all alp 83.0 1.1 3.7E-05 39.2 4.2 57 82-138 7-64 (223)
15 2pq7_A Predicted HD superfamil 82.8 0.94 3.2E-05 38.3 3.6 53 82-137 15-71 (220)
16 3sk9_A Putative uncharacterize 79.4 1 3.6E-05 40.5 2.9 46 95-143 18-83 (265)
17 1vqr_A Hypothetical protein CJ 77.6 1.3 4.6E-05 38.9 3.0 132 72-237 76-229 (297)
18 3tm8_A BD1817, uncharacterized 76.2 1.4 4.7E-05 40.0 2.7 27 204-232 231-258 (328)
19 3mem_A Putative signal transdu 74.0 1.5 5.1E-05 41.6 2.4 128 72-232 230-382 (457)
20 3kq5_A Hypothetical cytosolic 73.9 1.1 3.7E-05 43.3 1.5 37 103-139 75-120 (393)
21 3gw7_A Uncharacterized protein 52.1 6 0.0002 34.9 1.9 41 97-137 22-63 (239)
22 1ynb_A Hypothetical protein AF 51.1 7.8 0.00027 33.0 2.4 36 102-138 37-80 (173)
23 3nr1_A HD domain-containing pr 48.7 25 0.00086 29.6 5.2 53 82-134 7-62 (178)
24 3nqw_A CG11900; stringent resp 48.2 27 0.00094 29.4 5.3 53 82-134 9-64 (179)
25 2hek_A Hypothetical protein; p 47.0 9.9 0.00034 35.6 2.6 38 102-139 49-91 (371)
26 4dmb_A HD domain-containing pr 46.1 6.8 0.00023 34.2 1.3 44 102-158 44-90 (204)
27 3m5f_A Metal dependent phospho 45.7 9.9 0.00034 34.5 2.3 17 123-139 57-73 (244)
28 2paq_A 5'-deoxynucleotidase YF 44.7 8.2 0.00028 33.1 1.6 38 102-139 30-77 (201)
29 1chu_A Protein (L-aspartate ox 36.0 32 0.0011 32.8 4.3 52 65-116 443-501 (540)
30 3aql_A Poly(A) polymerase; tra 31.9 20 0.00067 34.0 2.1 36 103-138 266-303 (415)
31 1vj7_A Bifunctional RELA/SPOT; 29.4 42 0.0014 31.9 3.9 52 82-134 28-79 (393)
32 2gz4_A Hypothetical protein AT 29.4 34 0.0012 30.0 3.0 61 78-138 27-91 (207)
33 2l3i_A Aoxki4A, antimicrobial 27.8 32 0.0011 22.0 1.9 25 201-233 6-30 (30)
34 2dqb_A Deoxyguanosinetriphosph 25.5 24 0.00081 33.4 1.4 18 121-138 97-114 (376)
35 2q14_A Phosphohydrolase; BT420 23.8 19 0.00066 34.4 0.4 15 124-138 88-102 (410)
36 1dqu_A Isocitrate lyase; beta 23.4 40 0.0014 33.7 2.6 39 100-138 396-450 (538)
37 2ksn_A Ubiquitin domain-contai 23.1 1.1E+02 0.0037 25.7 4.8 47 61-118 34-83 (137)
38 2e5v_A L-aspartate oxidase; ar 23.1 53 0.0018 30.5 3.3 39 65-115 398-436 (472)
39 3u1n_A SAM domain and HD domai 22.1 54 0.0018 32.7 3.2 14 125-138 101-114 (528)
40 3mzo_A LIN2634 protein; HD-dom 21.5 61 0.0021 28.2 3.1 37 102-138 29-74 (216)
41 2cqz_A 177AA long hypothetical 20.8 34 0.0012 28.3 1.3 37 102-138 31-76 (177)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=4.4e-138 Score=951.96 Aligned_cols=256 Identities=43% Similarity=0.805 Sum_probs=234.7
Q ss_pred eecCC-CCCcccc----cccccCCCcchhhhhhHHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhh
Q 035614 19 AVDGE-LDVPRRN----AFGLDFRDFEKESLRNAIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYV 93 (278)
Q Consensus 19 ~~d~~-f~~p~~~----~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lv 93 (278)
.+|++ +..|+.+ +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 37777 5667776 77899999997 556899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCcccccc-cc
Q 035614 94 DESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQ-FF 172 (278)
Q Consensus 94 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F 172 (278)
||||||+|+|||+||||||||||+|||++||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999998878999999999999999987 499999999999999999999999999 99
Q ss_pred ccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHH
Q 035614 173 KENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKE 252 (278)
Q Consensus 173 ~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~ 252 (278)
++|||.+||+||||+|||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~ 245 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD 245 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccccc------------------ccCCCCCCC
Q 035614 253 MLKWLQVFNKYDLYSKS------------------KYFPEKLKW 278 (278)
Q Consensus 253 ~l~wv~~Fn~yDLYSK~------------------ky~P~~l~W 278 (278)
||+||++|||||||||| ||||++|+|
T Consensus 246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence 99999999999999999 999999999
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=3.9e-127 Score=867.08 Aligned_cols=229 Identities=47% Similarity=0.872 Sum_probs=218.5
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchh
Q 035614 47 AIVQECYRKNHIYQTCEFANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQ 126 (278)
Q Consensus 47 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q 126 (278)
+||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+++|||+|||||||+||+|+|+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999977779999
Q ss_pred hhhhhhcccccccccCCCCCCceeeecCeeeeecccCCcccccc-ccccCCCCCCccCCCCCCcccCCCCccccccccCc
Q 035614 127 LTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQ-FFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGH 205 (278)
Q Consensus 127 LtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGH 205 (278)
||||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+||||+|||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 489999999999999999999999999 99999999999999999999999999999999999
Q ss_pred chhHHHHHhcCCCCCCccchhhhhccccccccccccccccCChhhHHHHHHHHHcCCccccccc----------------
Q 035614 206 DEYMYLVAKGNNTTLPPAGLFIIRFHSFYAMHRHGAYTFLMNDEDKEMLKWLQVFNKYDLYSKS---------------- 269 (278)
Q Consensus 206 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSK~---------------- 269 (278)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCCCCC
Q 035614 270 --KYFPEKLKW 278 (278)
Q Consensus 270 --ky~P~~l~W 278 (278)
||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 999999999
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.99 E-value=0.033 Score=46.50 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 035614 80 MSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR---DHP-HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 80 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGLiHDLGKvl 138 (278)
|++.++.+.|.+.+++ ....|.+.+|...+. .++ +++-..++||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888999999987763 357899988876553 222 456688999999999975
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=93.95 E-value=0.037 Score=46.12 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 035614 80 MSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR---DHP-HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 80 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGLiHDLGKvl 138 (278)
|++.++.+.|.+.+++ ....|.+.+|...+. .++ +++=.-++||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887543 467899988776553 223 445678999999999985
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.50 E-value=0.047 Score=45.98 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 035614 79 EMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRR---DHP-HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 79 ~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGLiHDLGKvl 138 (278)
.|++.++.+.|.+.+++ .-..|.+.+|...+. .++ +++-..++||+||+||+.
T Consensus 9 ~~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 9 GLDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SSCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 38899999999887653 357899988776553 223 456688999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=91.74 E-value=0.15 Score=45.37 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred CCCCCcccHHHHHHHHH--------------hhhcCCCCCCCch-hHHHHHHHHHHHHh---hC--CCCCchhhhhhhhc
Q 035614 74 KLDKAEMSIWECCELLK--------------NYVDESDPDLDEP-QIDHLLQTAEAIRR---DH--PHEYWLQLTALIHD 133 (278)
Q Consensus 74 ~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~dl~-qi~H~lQTAEaiR~---d~--p~pdW~qLtGLiHD 133 (278)
++.+.--||.+|+-+|- ..+....+..+.. -..|.+.+|..++. .. ++++-+-++||+||
T Consensus 74 ~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHD 153 (305)
T 3hc1_A 74 SAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHD 153 (305)
T ss_dssp HTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45566788999987762 1222222223322 35999998887763 22 35678899999999
Q ss_pred ccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHH
Q 035614 134 LGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVA 213 (278)
Q Consensus 134 LGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vl 213 (278)
+||+.....+ | +.|. .|. +.-...|.. -.-.+.-.|-..|.+.=+.++
T Consensus 154 IGkl~l~~~~---p------~~~~-------~il--~~~~~~~~~--------------l~~~E~~~~~~~H~~iG~~ll 201 (305)
T 3hc1_A 154 VGEVFINFFR---G------KEFS-------QVV--TLVDEEKIT--------------FGQAEERLFGTSHCEVGFALA 201 (305)
T ss_dssp HHHHHHHHHS---H------HHHH-------HHH--HHHHHHCCC--------------HHHHHHHHHSSCHHHHHHHHH
T ss_pred hhHHHHHHHH---H------HHHH-------HHH--HHHHhcCCC--------------HHHHHHHHHCCCHHHHHHHHH
Confidence 9999854111 0 0000 000 000001100 001233445567999999999
Q ss_pred hcCCCCCCccchhhhhccccccccc
Q 035614 214 KGNNTTLPPAGLFIIRFHSFYAMHR 238 (278)
Q Consensus 214 k~n~stLP~eaL~mIRyHSFYpwH~ 238 (278)
+. ..+|++...+||+|-- ||..
T Consensus 202 ~~--w~lp~~i~~~I~~HHe-~~~~ 223 (305)
T 3hc1_A 202 KR--WSLNEFICDTILYHHD-IEAV 223 (305)
T ss_dssp HH--TTCCHHHHHHHHHTTC-GGGC
T ss_pred HH--cCCCHHHHHHHHHhCC-hhhc
Confidence 87 5799999999999853 4543
No 7
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=91.32 E-value=0.16 Score=45.05 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=74.4
Q ss_pred hcCCCCCcccHHHHHHHHH-----h---------hhcCCCC-CCCch-hHHHHHHHHHHHHh---hC--CCCCchhhhhh
Q 035614 72 YGKLDKAEMSIWECCELLK-----N---------YVDESDP-DLDEP-QIDHLLQTAEAIRR---DH--PHEYWLQLTAL 130 (278)
Q Consensus 72 ~~~~~~~~MsI~EA~e~Ln-----~---------lvDeSDP-D~dl~-qi~H~lQTAEaiR~---d~--p~pdW~qLtGL 130 (278)
+.++.+.--||.+|+-+|= + .++...+ ..+.. -..|.+++|..++. .. ++++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3345677789999998761 1 1121111 12333 35899999887764 22 35678899999
Q ss_pred hhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHH
Q 035614 131 IHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMY 210 (278)
Q Consensus 131 iHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY 210 (278)
+||+||+++...+ |+ .| .+.+.. +.. ++ . .-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~---p~------~~------------~~il~~-~~~-~~-------l----~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAW---PE------EY------------SECLRK-ADG-EA-------L----IALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHC---HH------HH------------HHHHHH-CCH-HH-------H----HHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHH---HH------HH------------HHHHHH-hhc-CC-------H----HHHHHHHHccCHHHHHH
Confidence 9999999864111 10 00 000000 000 00 0 11233455668999999
Q ss_pred HHHhcCCCCCCccchhhhhccc
Q 035614 211 LVAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 211 ~Vlk~n~stLP~eaL~mIRyHS 232 (278)
.+++. -.||++...+||+|-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99986 479999999999985
No 8
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=90.33 E-value=0.29 Score=42.90 Aligned_cols=120 Identities=10% Similarity=0.023 Sum_probs=72.5
Q ss_pred HhcCCCCCcccHHHHHHHH--------------HhhhcCCCCCC--Cch-hHHHHHHHHHHHH---hh--------CCCC
Q 035614 71 EYGKLDKAEMSIWECCELL--------------KNYVDESDPDL--DEP-QIDHLLQTAEAIR---RD--------HPHE 122 (278)
Q Consensus 71 ~~~~~~~~~MsI~EA~e~L--------------n~lvDeSDPD~--dl~-qi~H~lQTAEaiR---~d--------~p~p 122 (278)
-+..+.+.--||.+|+-.| ..+++...|-. ... -..|.+.+|..++ +. ..++
T Consensus 68 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~ 147 (281)
T 3i7a_A 68 ALYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNY 147 (281)
T ss_dssp TTTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCH
T ss_pred HHhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCH
Confidence 3445667778999999887 12333322221 112 3588888875544 22 2456
Q ss_pred CchhhhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccc
Q 035614 123 YWLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMS 202 (278)
Q Consensus 123 dW~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mS 202 (278)
+=.-++||+||+||+..+... ++ + ++.+. ++.. ++. .+.
T Consensus 148 ~~~~laGLLHdiGkl~l~~~~---~~-------~------------~~~l~------~~~~------------~~~-~~~ 186 (281)
T 3i7a_A 148 DTLTLAGLVHNIGALPVLTEA---EA-------H------------PEMFT------TIEH------------LRS-LVR 186 (281)
T ss_dssp HHHHHHHHHTTTTHHHHHHHH---HH-------C------------GGGCC------CHHH------------HHH-HHH
T ss_pred HHHHHHHHHHHCCHHHHHHhH---Hh-------h------------HHHhc------ChHH------------HHH-HHh
Confidence 778999999999999754111 00 0 11110 0000 111 233
Q ss_pred cCcchhHHHHHhcCCCCCCccchhhhhcccc
Q 035614 203 WGHDEYMYLVAKGNNTTLPPAGLFIIRFHSF 233 (278)
Q Consensus 203 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 233 (278)
..|.+.=+.+++. -.+|++...+||+|-=
T Consensus 187 ~~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 187 KMQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 4699999999987 4789999999999863
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=88.06 E-value=0.39 Score=41.30 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHH---HHHHH-HhhC-CCCCchhhhhhhhcccc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQ---TAEAI-RRDH-PHEYWLQLTALIHDLGK 136 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQ---TAEai-R~d~-p~pdW~qLtGLiHDLGK 136 (278)
|.++.+.+...+...|+.- .+.|.+. +|..| .+.. .+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3445555555555444443 4566655 45556 5543 47888999999999997
No 10
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=85.43 E-value=0.66 Score=40.45 Aligned_cols=56 Identities=16% Similarity=0.311 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhC-CCCCchhhhhhhhccccc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH-PHEYWLQLTALIHDLGKV 137 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGLiHDLGKv 137 (278)
|..+.+.+.+.....||.-++.-+.-.+.+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44555566666666677766666666677777776543 467889999999999984
No 11
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=85.10 E-value=0.56 Score=41.17 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=71.4
Q ss_pred CCCCCcccHHHHHHHH--------------HhhhcCCCCCCCchh-HHHHHHHHHHHHh----hCCCCCchhhhhhhhcc
Q 035614 74 KLDKAEMSIWECCELL--------------KNYVDESDPDLDEPQ-IDHLLQTAEAIRR----DHPHEYWLQLTALIHDL 134 (278)
Q Consensus 74 ~~~~~~MsI~EA~e~L--------------n~lvDeSDPD~dl~q-i~H~lQTAEaiR~----d~p~pdW~qLtGLiHDL 134 (278)
++.+.--||.+|+-+| ...++. .|..++.. ..|.+.+|..++. --.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 3455677888888876 112222 22333433 4799988876653 12356778999999999
Q ss_pred cccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhHHHHHh
Q 035614 135 GKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYMYLVAK 214 (278)
Q Consensus 135 GKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYlY~Vlk 214 (278)
||++....+ |+... .|. +..+ +. .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~~-------------~i~--~~~~--~~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVAA-------------TIS--AAVA--DG--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHHH-------------HHH--HHHH--TT--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHHH-------------HHH--HHHh--CC--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999864111 11100 000 0000 00 000 112334455679999999999
Q ss_pred cCCCCCCccchhhhhccc
Q 035614 215 GNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 215 ~n~stLP~eaL~mIRyHS 232 (278)
. -.||++....||||-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 6 479999999999985
No 12
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=83.87 E-value=0.8 Score=38.76 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhh-CCCCCchhhhhhhhcccccc
Q 035614 84 ECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRD-HPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 84 EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGLiHDLGKvl 138 (278)
++.+.+...+...|+.-++.-+.-.+++|..|.+. -.+++-+.+++|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 44445555554445555555555556666666653 25778899999999999854
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=83.29 E-value=0.58 Score=40.46 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhC-CCCCchhhhhhhhcccc
Q 035614 80 MSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH-PHEYWLQLTALIHDLGK 136 (278)
Q Consensus 80 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGLiHDLGK 136 (278)
+-|.++.+.+...+...|+.-++.-+.-.+++|..|.+.. .+++-+.+++|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455666666666665555555555555566676776532 57788899999999998
No 14
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=83.01 E-value=1.1 Score=39.21 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhC-CCCCchhhhhhhhcccccc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDH-PHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGLiHDLGKvl 138 (278)
|..+.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 44555566666666677766666666677777775442 4677889999999999863
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=82.82 E-value=0.94 Score=38.27 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHH---HHHHhhC-CCCCchhhhhhhhccccc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTA---EAIRRDH-PHEYWLQLTALIHDLGKV 137 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTA---EaiR~d~-p~pdW~qLtGLiHDLGKv 137 (278)
|.++.+.+.......|+..+ ..|.+.++ ..|.+.. .+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555666665554444444 45655544 4444432 366788999999999873
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=79.37 E-value=1 Score=40.45 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=33.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhh---------------CCC-----CCchhhhhhhhcccccccccCC
Q 035614 95 ESDPDLDEPQIDHLLQTAEAIRRD---------------HPH-----EYWLQLTALIHDLGKVLLHPAF 143 (278)
Q Consensus 95 eSDPD~dl~qi~H~lQTAEaiR~d---------------~p~-----pdW~qLtGLiHDLGKvl~l~~f 143 (278)
.|+++ -.|.+.|++-||+..+.- .|- ..|+...|++||+||.- +.|
T Consensus 18 ks~~~-~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~f 83 (265)
T 3sk9_A 18 KSGNP-FHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVF 83 (265)
T ss_dssp BSSST-TSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGG
T ss_pred cCCCC-cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHH
Confidence 34443 388999999999886651 232 36899999999999995 456
No 17
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=77.60 E-value=1.3 Score=38.90 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=72.6
Q ss_pred hcCCCCCcccHHHHHHHHH-----hhh------cC--CCCC---CCch-hHHHHHHHHHHHHhh---C--CCCCchhhhh
Q 035614 72 YGKLDKAEMSIWECCELLK-----NYV------DE--SDPD---LDEP-QIDHLLQTAEAIRRD---H--PHEYWLQLTA 129 (278)
Q Consensus 72 ~~~~~~~~MsI~EA~e~Ln-----~lv------De--SDPD---~dl~-qi~H~lQTAEaiR~d---~--p~pdW~qLtG 129 (278)
+..+.+.--||.+|+.+|- +++ +. ++++ .+.. -..|.+.+|..+++- . .+++=.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4456666689999998772 111 11 1111 1122 347877776655432 1 2346677899
Q ss_pred hhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcchhH
Q 035614 130 LIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHDEYM 209 (278)
Q Consensus 130 LiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHDEYl 209 (278)
|+||+||+.....+....+ +.++..... + | .+-.-.+.-.+...|.+.=
T Consensus 156 LLHDIGkl~l~~~~p~~~~-------------------~~~il~~~~---------~-~--~~l~~~E~~~~g~~H~~iG 204 (297)
T 1vqr_A 156 MLLRLGIVIFSNFLIQNHK-------------------DKDFLAFLN---------K-N--ENLALAENEFLGVDHISFL 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHH---------H-H--CCHHHHHHHHTSSCHHHHH
T ss_pred HHHHccHHHHHHHChhhhh-------------------HHHHHHHHH---------c-C--CCHHHHHHHHHCCCHHHHH
Confidence 9999999985411100000 000000000 0 0 0001133445556799999
Q ss_pred HHHHhcCCCCCCccchhhhhcccccccc
Q 035614 210 YLVAKGNNTTLPPAGLFIIRFHSFYAMH 237 (278)
Q Consensus 210 Y~Vlk~n~stLP~eaL~mIRyHSFYpwH 237 (278)
+.+++.. .+|++...+||+|-- ||.
T Consensus 205 a~ll~~w--~lp~~i~~aI~~Hh~-~~~ 229 (297)
T 1vqr_A 205 GFLLHRW--NFDDVLIESICFVRT-PHA 229 (297)
T ss_dssp HHHHHHT--TCCHHHHHHHHTTTC-GGG
T ss_pred HHHHHHC--CCCHHHHHHHHHhcC-hhh
Confidence 9999864 799999999999862 443
No 18
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=76.21 E-value=1.4 Score=39.99 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=21.8
Q ss_pred CcchhHHH-HHhcCCCCCCccchhhhhccc
Q 035614 204 GHDEYMYL-VAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 204 GHDEYlY~-Vlk~n~stLP~eaL~mIRyHS 232 (278)
.|.++=|. +++ +..+|++++.+||+|-
T Consensus 231 ~H~~~G~~~ll~--~~~~~~~v~~~i~~HH 258 (328)
T 3tm8_A 231 KHPIEGAQKVQD--KKHFDQTVINIIGQHE 258 (328)
T ss_dssp HHHHHHHHHHTT--CTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHhc
Confidence 38899999 554 3579999999999983
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=73.95 E-value=1.5 Score=41.61 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=74.0
Q ss_pred hcCCCCCcccHHHHHH-HH--H---h------hhcC---C-CCCCC-chhHHHHHHHHHHHHh---hC-----CCCCchh
Q 035614 72 YGKLDKAEMSIWECCE-LL--K---N------YVDE---S-DPDLD-EPQIDHLLQTAEAIRR---DH-----PHEYWLQ 126 (278)
Q Consensus 72 ~~~~~~~~MsI~EA~e-~L--n---~------lvDe---S-DPD~d-l~qi~H~lQTAEaiR~---d~-----p~pdW~q 126 (278)
|.++.+.--||.+|+- +| + + +.+. . +...+ ..-..|.+.+|..++. .. ++++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345567789999997 44 1 1 1121 1 11112 2346899988876653 22 2445678
Q ss_pred hhhhhhcccccccccCCCCCCceeeecCeeeeecccCCccccccccccCCCCCCccCCCCCCcccCCCCccccccccCcc
Q 035614 127 LTALIHDLGKVLLHPAFGEETQWCVVGDTFPLGCAFDNNIVHHQFFKENPDSRNPAFNTKLGIYSENIGLDNITMSWGHD 206 (278)
Q Consensus 127 LtGLiHDLGKvl~l~~f~~epQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~~~CGLdnV~mSWGHD 206 (278)
++||+||+||+++...+ |+. |. .| .+..+.||... -.-.++-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i--~~~~~~~~~~~-------------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LV--CRSLEVSPHID-------------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HH--HHHHHHCTTSC-------------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HH--HHHHHhcCCCC-------------HHHHHHHHHcCCHH
Confidence 99999999999964111 110 00 00 00001122110 00123445667899
Q ss_pred hhHHHHHhcCCCCCCccchhhhhccc
Q 035614 207 EYMYLVAKGNNTTLPPAGLFIIRFHS 232 (278)
Q Consensus 207 EYlY~Vlk~n~stLP~eaL~mIRyHS 232 (278)
|.=+.+++. -.||++....||||-
T Consensus 359 ~vGa~Ll~~--W~lP~~i~~aI~~HH 382 (457)
T 3mem_A 359 QIAAQLMEN--WGMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHhc
Confidence 999999986 479999999999985
No 20
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=73.91 E-value=1.1 Score=43.31 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=27.6
Q ss_pred hhHHHHHH-H---HHHHHhhCCCC-----Cchhhhhhhhccccccc
Q 035614 103 PQIDHLLQ-T---AEAIRRDHPHE-----YWLQLTALIHDLGKVLL 139 (278)
Q Consensus 103 ~qi~H~lQ-T---AEaiR~d~p~p-----dW~qLtGLiHDLGKvl~ 139 (278)
.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 75 GLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 75 SLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 45689998 5 67888889642 24456679999999974
No 21
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=52.14 E-value=6 Score=34.91 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhhC-CCCCchhhhhhhhccccc
Q 035614 97 DPDLDEPQIDHLLQTAEAIRRDH-PHEYWLQLTALIHDLGKV 137 (278)
Q Consensus 97 DPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGLiHDLGKv 137 (278)
|+.-++.-+.-.+.+|..|.+.. .+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44445555555566666665543 577889999999999995
No 22
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=51.07 E-value=7.8 Score=33.02 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHH---HHhhCCCCCc-----hhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEA---IRRDHPHEYW-----LQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEa---iR~d~p~pdW-----~qLtGLiHDLGKvl 138 (278)
.+..+|.+++|-. +-. ++.-|+ .-..+|+|||+.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5567999998875 433 355677 45679999999987
No 23
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=48.65 E-value=25 Score=29.61 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhc-CCCCCC-CchhHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcc
Q 035614 82 IWECCELLKNYVD-ESDPDL-DEPQIDHLLQTAEAIRRDHPHEYW-LQLTALIHDL 134 (278)
Q Consensus 82 I~EA~e~Ln~lvD-eSDPD~-dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDL 134 (278)
|.+|+++-..... .-..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 3445555444322 222332 578899999999999766343354 5678899985
No 24
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=48.15 E-value=27 Score=29.35 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhcCC-CCC-CCchhHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcc
Q 035614 82 IWECCELLKNYVDES-DPD-LDEPQIDHLLQTAEAIRRDHPHEYW-LQLTALIHDL 134 (278)
Q Consensus 82 I~EA~e~Ln~lvDeS-DPD-~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDL 134 (278)
|.+|+++-....... +.+ +..|-|.|.+.+|+.+..+.+-.|- ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 556666655544332 233 5689999999999999855342233 4458899986
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=46.97 E-value=9.9 Score=35.62 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHhh---CCC-C-Cchhhhhhhhccccccc
Q 035614 102 EPQIDHLLQTAEAIRRD---HPH-E-YWLQLTALIHDLGKVLL 139 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d---~p~-p-dW~qLtGLiHDLGKvl~ 139 (278)
-.-.+|.+.+|...|+- .+- + .-..++||+||+|+..+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 34578888888776642 232 2 46789999999999873
No 26
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=46.14 E-value=6.8 Score=34.21 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHhhCC-CCC--chhhhhhhhcccccccccCCCCCCceeeecCeeee
Q 035614 102 EPQIDHLLQTAEAIRRDHP-HEY--WLQLTALIHDLGKVLLHPAFGEETQWCVVGDTFPL 158 (278)
Q Consensus 102 l~qi~H~lQTAEaiR~d~p-~pd--W~qLtGLiHDLGKvl~l~~f~~epQW~vvGDTfpV 158 (278)
.+.-+|.+++|-..---.+ .-| =.-..+|+|||+.++ +||+.|+
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 4567999999876654322 223 345678999999987 5788665
No 27
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=45.72 E-value=9.9 Score=34.48 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.5
Q ss_pred Cchhhhhhhhccccccc
Q 035614 123 YWLQLTALIHDLGKVLL 139 (278)
Q Consensus 123 dW~qLtGLiHDLGKvl~ 139 (278)
+++-++++.||+||.--
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 56778999999999973
No 28
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=44.72 E-value=8.2 Score=33.05 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHH-------hhCC---CCCchhhhhhhhccccccc
Q 035614 102 EPQIDHLLQTAEAIR-------RDHP---HEYWLQLTALIHDLGKVLL 139 (278)
Q Consensus 102 l~qi~H~lQTAEaiR-------~d~p---~pdW~qLtGLiHDLGKvl~ 139 (278)
.+..+|.+++|-... ..+| +++=..+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 456789998886432 2333 3344556699999999983
No 29
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=35.95 E-value=32 Score=32.80 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhhcC-------CCCCCCchhHHHHHHHHHHHH
Q 035614 65 ANKKKEEYGKLDKAEMSIWECCELLKNYVDE-------SDPDLDEPQIDHLLQTAEAIR 116 (278)
Q Consensus 65 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDe-------SDPD~dl~qi~H~lQTAEaiR 116 (278)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++.+|++|-
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~ 501 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIV 501 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 4555667888889899999999999877432 222223457789999999873
No 30
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=31.86 E-value=20 Score=34.00 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHH-HHhhCCCCCchhhhhhhh-cccccc
Q 035614 103 PQIDHLLQTAEA-IRRDHPHEYWLQLTALIH-DLGKVL 138 (278)
Q Consensus 103 ~qi~H~lQTAEa-iR~d~p~pdW~qLtGLiH-DLGKvl 138 (278)
...+|++++... |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 356788876544 666667788999999999 999954
No 31
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=29.45 E-value=42 Score=31.95 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 035614 82 IWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRDHPHEYWLQLTALIHDL 134 (278)
Q Consensus 82 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 134 (278)
|.+|+++-.......-..+..|-|.|.+.+|+.+..-..+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 556666655543332223457889999999999886533333 6678999995
No 32
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=29.36 E-value=34 Score=29.96 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHhhhcCC---CCCCCchhHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcccccc
Q 035614 78 AEMSIWECCELLKNYVDES---DPDLDEPQIDHLLQTAEAIRRDHPHEYW-LQLTALIHDLGKVL 138 (278)
Q Consensus 78 ~~MsI~EA~e~Ln~lvDeS---DPD~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDLGKvl 138 (278)
..+.|.+-++.|..+.--+ .-..-.+.-+|.+++|.....-+|.-|+ ..+.+|+||++.++
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 4455666666664332111 1123467789999999877643333232 56778999999988
No 33
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=27.82 E-value=32 Score=21.96 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.1
Q ss_pred cccCcchhHHHHHhcCCCCCCccchhhhhcccc
Q 035614 201 MSWGHDEYMYLVAKGNNTTLPPAGLFIIRFHSF 233 (278)
Q Consensus 201 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 233 (278)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999987
No 34
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=25.52 E-value=24 Score=33.41 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=14.3
Q ss_pred CCCchhhhhhhhcccccc
Q 035614 121 HEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 121 ~pdW~qLtGLiHDLGKvl 138 (278)
+++-...+||+||+|+.-
T Consensus 97 ~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 97 NEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHTTTTCCS
T ss_pred CHHHHHHHHHHHhcCCCc
Confidence 346678899999999864
No 35
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.76 E-value=19 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=11.1
Q ss_pred chhhhhhhhcccccc
Q 035614 124 WLQLTALIHDLGKVL 138 (278)
Q Consensus 124 W~qLtGLiHDLGKvl 138 (278)
-+.++||+||+|+-=
T Consensus 88 ~~~~AaLlHDiGh~P 102 (410)
T 2q14_A 88 AVQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhccCCCc
Confidence 356788888888854
No 36
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=23.42 E-value=40 Score=33.71 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCchhHHHHHHHHHHHHhhCCCC----------Cc---h---hhhhhhhcccccc
Q 035614 100 LDEPQIDHLLQTAEAIRRDHPHE----------YW---L---QLTALIHDLGKVL 138 (278)
Q Consensus 100 ~dl~qi~H~lQTAEaiR~d~p~p----------dW---~---qLtGLiHDLGKvl 138 (278)
|..|.+..+-+-||+||+.||+. .| | ++--|+-||||+=
T Consensus 396 t~~P~~~~a~~fa~~i~~~~P~~~LaYN~SPSFnW~~~~~d~~~~~f~~~l~~~G 450 (538)
T 1dqu_A 396 SKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPRDEQETYIKRLGALG 450 (538)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCEEEEECCSSSCGGGTSCHHHHHSHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCceEEecCCcchhhhhhCCHHHHHHHHHHHHhcC
Confidence 45688899999999999999864 34 2 5666777777763
No 37
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=23.14 E-value=1.1e+02 Score=25.74 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHHHhh
Q 035614 61 TCEFANKKKEEYGKLD---KAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAIRRD 118 (278)
Q Consensus 61 Tvdfv~~~~~~~~~~~---~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d 118 (278)
|-+=..++|++|-.-- -++.-||+|+..--+++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 5555678999987754 578889999988887776554 5788888766
No 38
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=23.13 E-value=53 Score=30.53 Aligned_cols=39 Identities=5% Similarity=-0.092 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHHHH
Q 035614 65 ANKKKEEYGKLDKAEMSIWECCELLKNYVDESDPDLDEPQIDHLLQTAEAI 115 (278)
Q Consensus 65 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEai 115 (278)
.++...+|...-|.+-++.+|++.|+.|-.+ ++++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 5556677888889999999999999987532 78888776
No 39
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=22.08 E-value=54 Score=32.71 Aligned_cols=14 Identities=43% Similarity=0.658 Sum_probs=10.7
Q ss_pred hhhhhhhhcccccc
Q 035614 125 LQLTALIHDLGKVL 138 (278)
Q Consensus 125 ~qLtGLiHDLGKvl 138 (278)
++++||+||+|--=
T Consensus 101 v~~AaLlHDiGH~P 114 (528)
T 3u1n_A 101 VQIAGLCHDLGHGP 114 (528)
T ss_dssp HHHHHHHTTTTCBT
T ss_pred HHHHHHHhccCCCC
Confidence 56789999999543
No 40
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=21.48 E-value=61 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHH------hhC-CCCCc--hhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAIR------RDH-PHEYW--LQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEaiR------~d~-p~pdW--~qLtGLiHDLGKvl 138 (278)
.+..+|.+++|-..- +.. ++-|| +-+.+|+||++.++
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~ 74 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELF 74 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHH
Confidence 455688888765322 112 44566 67889999999988
No 41
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=20.75 E-value=34 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHH---Hh------hCCCCCchhhhhhhhcccccc
Q 035614 102 EPQIDHLLQTAEAI---RR------DHPHEYWLQLTALIHDLGKVL 138 (278)
Q Consensus 102 l~qi~H~lQTAEai---R~------d~p~pdW~qLtGLiHDLGKvl 138 (278)
.+..+|.++.|... -. .--+++...+.+|+||++.++
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~ 76 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAI 76 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHH
Confidence 34556766665433 22 112445567999999998874
Done!