BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035615
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VADLAIGL++ LRRI + YVR G W K GD+ L K G +VGI+ LG IG V R
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAW-KFGDFKLTTKFSGKRVGIIGLGRIGLAVAER 182
Query: 98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
+AF ISY SR K+P+ + Y +V +LA NSD+LVV C LT +T HIIN++V+ LG
Sbjct: 183 AEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALG 242
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
G++IN+GRG +DE E++ LV+G + G GLDVFE +P VP++ L+N+VLLP
Sbjct: 243 PKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLP 298
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VADL I L + LRR+ G+ VR G WA PLG G ++G++ LG IG + +R
Sbjct: 130 VADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASR 189
Query: 98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
+AFG + Y +R V + + DLA +SDVL VC A + T +I++ ++ LG
Sbjct: 190 AEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA 217
G+++NV RG ++DE +++ L G I G GLDVF N+P + E N VL P Q +
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGS 309
Query: 218 LT 219
T
Sbjct: 310 AT 311
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 9/190 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK----LGGMQVGIVRLGNIGSE 93
VA+ +GL+I+ +R+I + ++R G W GFK L G +VGI+ +G IG
Sbjct: 101 VAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160
Query: 94 VLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
+ RL FG + Y SR ++ +V L ++ +L SD++++ LT T+HIIN+
Sbjct: 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD-NI 209
+ + +L +G ++N+GRGAL+DEK + + + QG + G DVFE +P E + +
Sbjct: 221 ERVKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWET 279
Query: 210 VLLPCQNALT 219
VL P L
Sbjct: 280 VLTPHYAGLA 289
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
A+LA+ LL+ RR+ V+ G W T PL G+ L VGI+ LG IG +
Sbjct: 113 TAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIGQAI 170
Query: 95 LNRLQAFGF-IISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIINK 150
RL+ FG Y R+ RP + A + +LA SD +VV C+LT T + NK
Sbjct: 171 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNI 209
D ++ + + IN+ RG ++++ ++ Q L G I GLDV +P P L L N
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 210 VLLPCQNALTH 220
V+LP + TH
Sbjct: 291 VILPHIGSATH 301
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
A+LA+ LL+ RR+ V+ G W T PL G+ L VGI+ LG IG +
Sbjct: 111 TAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIGQAI 168
Query: 95 LNRLQAFGF-IISYNSRRKRPSVLFPYCA---NVYDLAVNSDVLVVCCALTEQTHHIINK 150
RL+ FG Y R+ RP + A + +LA SD +VV C+LT T + NK
Sbjct: 169 ARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LRLDNI 209
D + + + IN+ RG ++++ ++ Q L G I GLDV +P P L L N
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 210 VLLPCQNALTH 220
V+LP + TH
Sbjct: 289 VILPHIGSATH 299
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 51 RRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII 105
R + G+ +VR+G W K G + LG+ + G +GI+ LG IG + R + F I
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 106 SYNSRRKRPSVLFPYCAN---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162
Y SR ++ V A + DL SD +V+ LT +T+H+IN++ + + K ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
IN+ RG ++D +++ L +G I G GLDVFE +P +E +LDN+VL P
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTP 287
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 51 RRISPGNWYVRAGLWAKTG-----DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII 105
R + G+ +VR+G W K G + LG+ + G +GI+ LG IG + R + F I
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 106 SYNSRRKRPSVLFPYCAN---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162
Y SR ++ V A + DL SD +V+ LT +T+H+IN++ + K ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAIL 236
Query: 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
IN+ RG ++D +++ L +G I G GLDVFE +P +E +LDN+VL P
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTP 287
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 6/186 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+LA+GL+ R+I+ + +R G+WAK +G +L G +GI+ G IG +V
Sbjct: 103 VAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKI 160
Query: 98 LQAFGF-IISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
A G I+ Y+ +R + ++ L SDV+ + L E T+H+IN++ +
Sbjct: 161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLK 220
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLP 213
+ K ++IN RG ++D +++ L +G I G GLDVFE +P PL + DN+VL P
Sbjct: 221 LMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTP 280
Query: 214 CQNALT 219
A T
Sbjct: 281 HIGAST 286
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 39 ADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL-GFKLGGMQVGIVRLGNIGSEVLNR 97
A++A L+++ RR + VR+G W G L G L G ++GI G IG + R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 98 LQAFGFIISYNSRRKRPSVLFP---YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
+ FG I Y++R + L Y + L SD+ ++ + ++ D +A
Sbjct: 192 ARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA 251
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPC 214
++ +G ++IN+ RG LI++ +++ L + GLDVF N+P + LDNI L P
Sbjct: 252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPH 311
Query: 215 QNALTH 220
+ TH
Sbjct: 312 IGSATH 317
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2 LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
LC+ NLY WL Q +++ + + ++ +R ++ G +R
Sbjct: 127 LCHILNLY-----RRATWLHQALREGTRVQS--------------VEQIREVASGAARIR 167
Query: 62 AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
G +GI+ LG +G V R +AFGF + Y S ++
Sbjct: 168 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALG 210
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
+ + DL +SD + + C L E HH+IN + ++ +G ++N RG L+DEK +
Sbjct: 211 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 270
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
Q L +G I G LDV E++P + + PL+ N++ P
Sbjct: 271 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2 LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
LC+ NLY WL Q +++ + + ++ +R ++ G +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62 AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
G +GI+ LG +G V R +AFGF + Y S ++
Sbjct: 171 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
+ + DL +SD + + C L E HH+IN + ++ +G ++N RG L+DEK +
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
Q L +G I G LDV E++P + + PL+ N++ P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 2 LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
LC+ NLY WL Q +++ + + ++ +R ++ G +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62 AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
G +GI+ LG +G V R +AFGF + Y S ++
Sbjct: 171 -----------------GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
+ + DL +SD + + C L E HH+IN + ++ +G ++N RG L+DEK +
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
Q L +G I G LDV E++P + + PL+ N++ P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK-LGGMQVGIVRLGNIGSEVLN 96
VA+L IG +I +RRI P + AG W KT +G + + G +GIV GNIGS+V N
Sbjct: 117 VAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTLGIVGYGNIGSQVGN 173
Query: 97 RLQAFGFIISY--NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154
++ G + Y S + + + P A++ +L SDV+ + ++ T +I + +
Sbjct: 174 LAESLGMTVRYYDTSDKLQYGNVKP-AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLR 232
Query: 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE----PLR-LDNI 209
++ KG +IN RG+ +D + + + L +G + G +DVF +P E PL+ L+N+
Sbjct: 233 KMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENV 292
Query: 210 VLLP 213
+L P
Sbjct: 293 ILTP 296
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 2 LCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLIDFLRRISPGNWYVR 61
LC+ NLY WL Q +++ + + ++ +R ++ G +R
Sbjct: 130 LCHILNLY-----RRTTWLHQALREGTRVQS--------------VEQIREVASGAARIR 170
Query: 62 AGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFII----SYNSRRKRPSVL 117
G +GI+ L +G V R +AFGF + Y S ++
Sbjct: 171 -----------------GETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALG 213
Query: 118 FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEML 177
+ + DL +SD + + C L E HH+IN + ++ +G ++N RG L+DEK +
Sbjct: 214 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 273
Query: 178 QFLVQGDINGVGLDVFENDP-NVPKEPLR-LDNIVLLP 213
Q L +G I G LDV E++P + + PL+ N++ P
Sbjct: 274 QALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 311
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 56 GNWYVRAGLW-AKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP 114
G Y R GLW A + LG L G+ +G+V +G IG V R AFG + Y++R +P
Sbjct: 120 GAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP 179
Query: 115 SVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEK 174
+ +P+ ++ +L +DV+ + LT +TH ++N++ + + +G +++N RGAL+D +
Sbjct: 180 -LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTE 237
Query: 175 EMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLP 213
+++ L +G + G GLDV + +P P PL L N V+ P
Sbjct: 238 ALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITP 276
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + +++ +R P + + R G W + L M VG V G IG VL R
Sbjct: 151 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 210
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L F + Y R + P + + A D+ DV+ + C L +T H+IN +
Sbjct: 211 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
+ +G I+N RG L D + + L G + G DV+ P P R
Sbjct: 271 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 323
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + +++ +R P + + R G W + L M VG V G IG VL R
Sbjct: 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 209
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L F + Y R + P + + A D+ DV+ + C L +T H+IN +
Sbjct: 210 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 269
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
+ +G I+N RG L D + + L G + G DV+ P P R
Sbjct: 270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 322
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + +++ +R P + + R G W + L M VG V G IG VL R
Sbjct: 151 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 210
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L F + Y R + P + + A D+ DV+ + C L +T H+IN +
Sbjct: 211 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
+ +G I+N RG L D + + L G + G DV+ P P R
Sbjct: 271 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR 323
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK---RPSVLFPYCANVYDLAVNS 131
++ G +G++ G G V R +AFGF +I Y+ + S+ + DL S
Sbjct: 149 RIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQS 208
Query: 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD 191
D + + C L E HH+IN + ++ +G ++N RG L+DEK + Q L +G I G LD
Sbjct: 209 DCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALD 268
Query: 192 VFENDP-NVPKEPLR-LDNIVLLP 213
V E++P + + PL+ N++ P
Sbjct: 269 VHESEPFSFAQGPLKDAPNLICTP 292
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 51 RRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNS 109
R+I + +R W ++ G ++ G VG+V LG IG V R+ AFG ++++Y+
Sbjct: 116 RQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 173
Query: 110 --RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR 167
R + L ++ DL +D + V T +T +I+K+ +A+ G +I+N R
Sbjct: 174 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233
Query: 168 GALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALT 219
G L+DE + + G + GLDVF +P L +V+ P A T
Sbjct: 234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGAST 285
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 51 RRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNS 109
R+I + +R W ++ G ++ G VG+V LG IG V R+ AFG ++++Y+
Sbjct: 115 RQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 172
Query: 110 --RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR 167
R + L ++ DL +D + V T +T +I+K+ +A+ G +I+N R
Sbjct: 173 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 232
Query: 168 GALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALT 219
G L+DE + + G + GLDVF +P L +V+ P A T
Sbjct: 233 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGAST 284
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+LAIGL + R + + +VR+G + G L VG + +G IG + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98 LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
LQ +G + Y++R+ +R + C+ ++ +SD +++ L T H++N
Sbjct: 164 LQGWGATLQYHARKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
+++A + G +++N RG+++DE +L L +G + G DVFE
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFE 264
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+LAIGL + R + + +VR+G + G L VG + +G IG + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98 LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
LQ +G + Y++R+ +R + C+ ++ +SD +++ L T H++N
Sbjct: 164 LQGWGATLQYHARKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
+++A + G +++N RG+++DE +L L +G + G DVFE D P ++D
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
+L
Sbjct: 281 LL 282
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + ++ +R PG V G W G + L G +G V G IG +L R
Sbjct: 123 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 182
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L+ FG + Y+ R + L + ++ ++ DV+V+ LTE+T + NK++
Sbjct: 183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
+ +L KG +I+N RGA+++ + ++ + G I G DV++ P P R + N +
Sbjct: 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAM 302
Query: 212 LPCQNALT 219
P + T
Sbjct: 303 TPHTSGTT 310
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + ++ +R PG V G W G + L G +G V G IG +L R
Sbjct: 129 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 188
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L+ FG + Y+ R + L + ++ ++ DV+V+ LTE+T + NK++
Sbjct: 189 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 248
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR-LDNIVL 211
+ +L KG +I+N RGA+++ + ++ + G I G DV++ P P R + N +
Sbjct: 249 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAM 308
Query: 212 LPCQNALT 219
P + T
Sbjct: 309 TPHTSGTT 316
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+L G+++ R+I ++ G W + +G +L G +GI+ LG IG EV R
Sbjct: 126 AAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLGILGLGRIGREVATR 183
Query: 98 LQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNS-----DVLVVCCALTEQTHHIINKD 151
+Q+FG I Y+ P V + V L + D + V L T ++N +
Sbjct: 184 MQSFGMKTIGYDPIIS-PEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDN 240
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVL 211
A+ KG ++N RG ++DE +L+ L G G LDVF +P + + +N++
Sbjct: 241 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVIS 300
Query: 212 LPCQNALTH 220
P A T
Sbjct: 301 CPHLGASTK 309
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + +++ +R P + + R G W + + GM VG V G IG VL
Sbjct: 150 VAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRL 209
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L F + Y R + P + + A D+ DV+ + C L +T H+IN +
Sbjct: 210 LAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDET 269
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
+ +G ++N RG L D +++ L G + G DV+ P P R
Sbjct: 270 LKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 322
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + +++ +R P + + R G W + + GM VG V G IG VL
Sbjct: 151 VAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRL 210
Query: 98 LQAFGFIISYNSRRKRPSVL-----FPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152
L F + Y R + P + + A D+ DV+ + C L +T H+IN +
Sbjct: 211 LAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDET 270
Query: 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
+ +G ++N RG L D +++ L G + G DV+ P P R
Sbjct: 271 LKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 323
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 10/184 (5%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPL---GFKLGGMQVGIVRLGNIGSEV 94
A++A+ LL+ RR G +R W G PL G KL +GI G+IG +
Sbjct: 104 TAEIAMLLLLGSARRAGEGEKMIRTRSW--PGWEPLELVGEKLDNKTLGIYGFGSIGQAL 161
Query: 95 LNRLQAFGFIISY-NSRRKRPSVLFPYCANVYD----LAVNSDVLVVCCALTEQTHHIIN 149
R Q F I Y ++ R S Y A +D L S + T +T + N
Sbjct: 162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 221
Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209
K + L +G +++N RG L+D + ++ L G + G DVF +PN+ + L N
Sbjct: 222 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281
Query: 210 VLLP 213
L P
Sbjct: 282 FLFP 285
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+LAIGL + R + + +VR+G + G L VG + +G IG + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98 LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
LQ +G + Y+ + +R + C+ ++ +SD +++ L T H++N
Sbjct: 164 LQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
+++A + G +++N RG+++DE +L L +G + G DVFE D P ++D
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
+L
Sbjct: 281 LL 282
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+LAIGL + R + + +VR+G + G L VG + +G IG + +R
Sbjct: 104 TAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADR 163
Query: 98 LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
LQ +G + Y+ + +R + C+ ++ +SD +++ L T H++N
Sbjct: 164 LQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 220
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE-NDPNVPKEPLRLDNI 209
+++A + G +++N RG+++DE +L L +G + G DVFE D P ++D
Sbjct: 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPA 280
Query: 210 VL 211
+L
Sbjct: 281 LL 282
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
A+LAIGL + R + + +VR+G + G L VG + G IG +R
Sbjct: 105 TAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADR 164
Query: 98 LQAFGFIISYNSRR-------KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150
LQ +G + Y++ + +R + C+ ++ +SD +++ L T H++N
Sbjct: 165 LQGWGATLQYHAAKALDTQTEQRLGLRQVACSELF---ASSDFILLALPLNADTLHLVNA 221
Query: 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196
+++A + G +++N RG+++DE +L L +G + G DVFE +
Sbjct: 222 ELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXE 267
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
+A+ A+ + LR + ++AG + K G + +G +LG VG++ G+IG +
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKL 163
Query: 98 LQAFGF-IISYNS---RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153
+ FG +I+Y+ + P F Y + + DL SDV+ + EQ HIIN+
Sbjct: 164 FKGFGAKVIAYDPYPMKGDHPD--FDYVS-LEDLFKQSDVIDLHVPGIEQNTHIINEAAF 220
Query: 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194
+ G ++IN R LID + ML L G + GVG+D +E
Sbjct: 221 NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE 261
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 36 PIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVL 95
P++++ G L+ +R++ + LW +P L G + I+ G+IG +
Sbjct: 101 PLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS---HPYQ-GLKGRTLLILGTGSIGQHIA 156
Query: 96 NRLQAFGFIISYNSRRKRPSVLFPYCANVYDL-AVN-----SDVLVVCCALTEQTHHIIN 149
+ + FG + SR R F VY L A+N +DV+V T +THH+
Sbjct: 157 HTGKHFGMKVLGVSRSGRERAGF---DQVYQLPALNKMLAQADVIVSVLPATRETHHLFT 213
Query: 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDN 208
G ++ NVGRG I+E ++L L G + LDVFE +P PL N
Sbjct: 214 ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPN 273
Query: 209 IVLLPCQNALT 219
+++ P +A +
Sbjct: 274 LIITPHNSAYS 284
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 40 DLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
+ A+ ++ + RR LW +Y VGI G +G++V LQ
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEY----TREEFSVGIXGAGVLGAKVAESLQ 159
Query: 100 AFGFIIS--YNSRRKRPSVLFPYCANVYDLAVN-SDVLVVCCALTEQTHHIINKDVMAEL 156
A+GF + SR+ P V +N + VL+ T QT IIN +++ +L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-RLDNIVLLPCQ 215
G ++N+ RG + E ++L L G + G LDVF +P + PL R + P
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHI 279
Query: 216 NALT 219
A+T
Sbjct: 280 AAVT 283
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ ++ ++R+ V+ +++ + L +L + +G++ G IGS V
Sbjct: 101 VAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXY 159
Query: 98 LQAFGFIISYNSRRKRPSVLFPYC--ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155
AFG + KR + C ++ +L SDV+ + T++THH IN++ ++
Sbjct: 160 GLAFGXKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISL 219
Query: 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196
G +IN RG ++D + + +G +G+GLDVFE++
Sbjct: 220 XKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 40 DLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQ 99
+L IGL+I R++ ++G++ K G +L G +GIV G IG++V
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIFKKIE----GLELAGKTIGIVGFGRIGTKVGIIAN 162
Query: 100 AFGF-IISYN--SRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
A G +++Y+ R++ + ++ +L NSDV+ + +++ II+ +
Sbjct: 163 AMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELM 222
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLD 207
+I+N R ++ K +L ++ +G + DVF N+P PKE L+
Sbjct: 223 KDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKEEWELE 271
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 39 ADLAIGLLIDFLRRISPGNWYVRAGLWAKTG--------DYPLGFKLGGMQVGIVRLGNI 90
A+L L++ RRI ++ G W ++G ++ +G L G +GI G I
Sbjct: 112 AELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKI 171
Query: 91 GSEVLNRLQAFGFII----SYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHH 146
G V +AFG + NS+ + + F + L SDVL V L ++T
Sbjct: 172 GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRS 231
Query: 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEP-LR 205
II + + + +N R L++E M+ L +G +DVFE +P + LR
Sbjct: 232 IITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLR 291
Query: 206 LDNIVLLP 213
++N + P
Sbjct: 292 MENCICTP 299
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
+DLA+ L++ R S + RA A+TGD P F ++G G +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86 RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
LG I E+ + + G + Y ++ ++ +LA SD + V
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
+ THH+I++ A + G I+N RG +I + ++ L G + GLDV E +PNV
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNV 289
Query: 200 PKEPLRLDNIVL 211
KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+L IG L+ LR + N G+W K F+ G ++GI+ G+IG+++
Sbjct: 111 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 168
Query: 98 LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
++ G ++ Y+ K P ++ DL SDV+ + T +++ ++ +
Sbjct: 169 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 228
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
G ++IN RG ++D + L + G +DVF +P +P DN++L
Sbjct: 229 KPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLL 288
Query: 212 LP 213
P
Sbjct: 289 TP 290
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+L IG L+ LR + N G+W K F+ G ++GI+ G+IG+++
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98 LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
++ G ++ Y+ K P ++ DL SDV+ + T +++ ++ +
Sbjct: 170 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
G ++IN RG ++D + L + G +DVF +P +P DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 289
Query: 212 LP 213
P
Sbjct: 290 TP 291
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+L IG L+ LR + N G+W K F+ G ++GI+ G+IG+++
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98 LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
++ G ++ Y+ K P ++ DL SDV+ + T +++ ++ +
Sbjct: 170 AESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
G ++IN RG ++D + L + G +DVF +P +P DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 289
Query: 212 LP 213
P
Sbjct: 290 TP 291
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
+DLA+ L++ R S + RA A+TGD P F ++G G +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86 RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
LG I E+ + + G + Y ++ ++ +LA SD + V
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
+ THH+I++ A + G I+N RG +I + ++ L G + GLDV E +P V
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV 289
Query: 200 PKEPLRLDNIVL 211
KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF-----KLG-------GMQVGIV 85
+DLA+ L++ R S + RA A+TGD P F ++G G +G V
Sbjct: 117 TSDLALYLILSVFRLAS---YSERA---ARTGD-PETFNRVHLEIGKSAHNPRGHVLGAV 169
Query: 86 RLGNIGSEVLNR-LQAFGFIISY-----NSRRKRPSVLFPYCANVYDLAVNSDVLVVCCA 139
LG I E+ + + G + Y ++ ++ +LA SD + V
Sbjct: 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVP 229
Query: 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV 199
+ THH+I++ A + G I+N RG +I + ++ L G + GLDV E +P V
Sbjct: 230 YMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV 289
Query: 200 PKEPLRLDNIVL 211
KE + + ++ L
Sbjct: 290 SKELIEMKHVTL 301
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+L IG L+ LR + N G+W K F+ G ++GI+ G+IG+++
Sbjct: 112 VAELVIGELLLLLRGVPEANAKAHRGVWNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 169
Query: 98 LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
++ G ++ Y+ K P ++ DL SDV+ + T + ++
Sbjct: 170 AESLGXYVYFYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLX 229
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
G ++IN RG ++D + L + G +DVF +P +P DN++L
Sbjct: 230 KPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLL 289
Query: 212 LP 213
P
Sbjct: 290 TP 291
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + ++ +R P + + W + + G + + G IG VL R
Sbjct: 124 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 183
Query: 98 LQAFG----FIISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
L F Y + + V N+ +L +D++ V L T +INK+
Sbjct: 184 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 243
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
++++ KG ++N RGA+ +++ L G + G G DV+ P P R
Sbjct: 244 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR 297
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 65 WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
WA T +G ++ VG+V G+IG + ++ FG +I+Y+ R P + Y
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
++ DL +DV+ + H+IN + +A++ + +I+NV RG L+D +++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
G I G +DV+E +
Sbjct: 251 SGKIFGYAMDVYEGE 265
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ + ++ +R P + + W + + G + + G IG VL R
Sbjct: 123 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 182
Query: 98 LQAFG----FIISYNS--RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151
L F Y + + V N+ +L +D++ V L T +INK+
Sbjct: 183 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 242
Query: 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLR 205
++++ KG ++N RGA+ +++ L G + G G DV+ P P R
Sbjct: 243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR 296
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 65 WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
WA T +G ++ VG+V G+IG + ++ FG +I+Y+ R P + Y
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
++ DL +DV+ + H+IN + +A++ + +I+NV RG L+D +++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
G I G +DV+E +
Sbjct: 251 SGKIFGYAMDVYEGE 265
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+L IG L+ LR + N G+ K F+ G ++GI+ G+IG+++
Sbjct: 106 VAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG--SFEARGKKLGIIGYGHIGTQLGIL 163
Query: 98 LQAFG-FIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156
++ G ++ Y+ K P ++ DL SDV+ + T + ++
Sbjct: 164 AESLGXYVYFYDIENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLX 223
Query: 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPL-----RLDNIVL 211
G ++IN RG ++D + L + G +DVF +P +P DN++L
Sbjct: 224 KPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL 283
Query: 212 LP 213
P
Sbjct: 284 TP 285
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 65 WAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFP--YC 121
WA T +G ++ VG+V G+IG + ++ FG +I+Y+ K P + Y
Sbjct: 136 WAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIF-KNPELEKKGYYV 190
Query: 122 ANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181
++ DL +DV+ + H+IN +AE+ G +I+N RG L+D +++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLD 250
Query: 182 QGDINGVGLDVFEND 196
G I G +D +E++
Sbjct: 251 SGKIFGFVMDTYEDE 265
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCC 138
+ VG++ +G+IGS V A G +I+Y+ F + + +D++ +
Sbjct: 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHT 208
Query: 139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE---- 194
L T ++I + + E+ K +IN RG L+D +++ L G+I G GLD
Sbjct: 209 PLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESS 268
Query: 195 -------NDPNVP---KEPLRLDNIVLLP 213
D +P K ++ N+V+ P
Sbjct: 269 YFGHTGLTDSEIPEDYKTLAKMPNVVITP 297
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYC---ANVYDLAVNSDV 133
L G Q+ I G IG + + A G + + P+ F D ++
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANF 194
Query: 134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193
+V LT THH+ + ++ + + M+IN+GRG +D ++ L ++ LDV
Sbjct: 195 IVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254
Query: 194 ENDPNVPKEPL-RLDNIVLLP 213
E +P PL + D++++ P
Sbjct: 255 EPEPLPTDHPLWQRDDVLITP 275
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDV 133
GF L +GIV +GN+GS + RL+A G + + +L +DV
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADV 173
Query: 134 LVVCCALTE----QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG 189
L L + +T H+ ++ ++ L G ++IN RG ++D +L L G V
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233
Query: 190 LDVFENDPNV 199
LDV+E +P++
Sbjct: 234 LDVWEGEPDL 243
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 27 KSIAKQADLPI----------VADLAIGLLIDFLR-------RISPGNWYVRAGLWAKTG 69
K AK+ P+ +A+LA+ + LR R + N+ V A +++K
Sbjct: 85 KEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK-- 142
Query: 70 DYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVY--DL 127
++ VG+V LG IG G + + + YC V ++
Sbjct: 143 ------EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE-DYCTQVSLDEV 195
Query: 128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDING 187
SD++ + ++ ++ +D + ++ G +++N RG L+D + +++ + G + G
Sbjct: 196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGG 255
Query: 188 VGLDVFENDPNV 199
G DV + + +V
Sbjct: 256 YGCDVLDGEASV 267
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNR 97
VA+ A LL+ + I N +AG++ ++ P L G +GI+ G IG V +
Sbjct: 85 VAEHAFALLLAHAKNILENNELXKAGIFRQS---PTTL-LYGKALGILGYGGIGRRVAHL 140
Query: 98 LQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157
+AFG + +R + + DL SD +++ LT++T +N ++A
Sbjct: 141 AKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANAR 200
Query: 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
K I+NV R ++ + + + FL + DV+ N+P + + LR N +L P
Sbjct: 201 KNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR--NAILSP 254
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKE 202
T H++++ +A L G ++N RGA++D + + + L G V LDV+E +P E
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPE 243
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 67 KTGDY------PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPY 120
K GDY PL + G +V ++ LG IG+ V L A G + SR + P+
Sbjct: 109 KRGDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG---PW 162
Query: 121 -CANVYDLAVNSDVLVVCC-ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDE----- 173
N + A+ VC L + T ++ +A + + +NVGR ++D
Sbjct: 163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLR 222
Query: 174 --KEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLP 213
KE QF+ D+ G + F D E L N+V P
Sbjct: 223 ILKERPQFIFASDV-WWGRNDFAKD----AEFFSLPNVVATP 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,936,252
Number of Sequences: 62578
Number of extensions: 285928
Number of successful extensions: 716
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 62
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)