Query 035615
Match_columns 223
No_of_seqs 357 out of 1908
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1E-66 2.3E-71 454.2 21.7 218 2-221 63-289 (324)
2 PRK08410 2-hydroxyacid dehydro 100.0 1.4E-64 3E-69 440.2 23.2 219 2-221 60-290 (311)
3 PRK15409 bifunctional glyoxyla 100.0 4.4E-64 9.5E-69 438.7 22.6 220 2-221 63-292 (323)
4 COG1052 LdhA Lactate dehydroge 100.0 7.1E-64 1.5E-68 436.1 21.0 219 3-221 64-295 (324)
5 PRK06487 glycerate dehydrogena 100.0 1.8E-63 3.9E-68 434.3 23.1 217 3-221 64-291 (317)
6 PRK06932 glycerate dehydrogena 100.0 5E-63 1.1E-67 430.9 22.6 219 2-221 62-293 (314)
7 PLN03139 formate dehydrogenase 100.0 1.5E-61 3.1E-66 429.8 22.5 219 3-221 119-347 (386)
8 PRK13243 glyoxylate reductase; 100.0 1.8E-61 3.8E-66 424.4 21.9 220 2-221 64-295 (333)
9 PRK07574 formate dehydrogenase 100.0 1.5E-61 3.3E-66 429.9 21.5 220 2-221 111-340 (385)
10 PRK11790 D-3-phosphoglycerate 100.0 2.3E-61 5E-66 433.6 22.5 218 2-221 72-299 (409)
11 PLN02306 hydroxypyruvate reduc 100.0 9.6E-61 2.1E-65 425.5 22.1 219 3-221 82-327 (386)
12 PLN02928 oxidoreductase family 100.0 1.7E-60 3.6E-65 420.0 21.8 215 3-221 80-318 (347)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 3.9E-59 8.5E-64 431.1 22.3 217 3-221 60-284 (525)
14 PRK15469 ghrA bifunctional gly 100.0 1.9E-58 4.1E-63 401.5 22.2 216 3-222 54-283 (312)
15 PRK06436 glycerate dehydrogena 100.0 3.6E-58 7.8E-63 397.9 23.2 212 2-220 46-262 (303)
16 PRK13581 D-3-phosphoglycerate 100.0 2.5E-58 5.4E-63 425.8 21.7 217 2-221 61-285 (526)
17 KOG0068 D-3-phosphoglycerate d 100.0 1.1E-58 2.5E-63 393.9 14.9 218 3-222 68-295 (406)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.5E-57 3.3E-62 393.4 19.5 220 2-221 81-308 (336)
19 PRK12480 D-lactate dehydrogena 100.0 2E-57 4.4E-62 397.9 19.8 217 4-221 68-303 (330)
20 PRK15438 erythronate-4-phospha 100.0 7.5E-56 1.6E-60 392.1 20.6 198 3-221 56-261 (378)
21 PRK08605 D-lactate dehydrogena 100.0 3E-55 6.4E-60 384.9 20.8 218 3-221 65-305 (332)
22 PRK00257 erythronate-4-phospha 100.0 6.2E-55 1.3E-59 387.1 20.6 198 3-221 56-261 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.4E-52 5.1E-57 336.9 11.9 173 43-216 1-178 (178)
24 KOG0067 Transcription factor C 99.9 5.3E-28 1.2E-32 208.5 9.0 209 5-220 95-318 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 4.1E-21 9E-26 173.7 15.9 163 12-201 198-369 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 8.4E-19 1.8E-23 151.2 9.7 149 6-186 90-257 (287)
27 PLN02494 adenosylhomocysteinas 99.7 3.2E-17 7E-22 148.2 9.1 116 76-197 251-374 (477)
28 TIGR00936 ahcY adenosylhomocys 99.6 1.2E-15 2.5E-20 136.8 10.1 115 76-195 192-312 (406)
29 PRK13403 ketol-acid reductoiso 99.6 1.9E-15 4.2E-20 130.8 8.8 88 75-164 12-104 (335)
30 PF03446 NAD_binding_2: NAD bi 99.6 1.5E-15 3.2E-20 120.6 6.1 111 80-192 2-118 (163)
31 COG2084 MmsB 3-hydroxyisobutyr 99.6 6.3E-15 1.4E-19 126.2 10.1 116 80-197 1-126 (286)
32 PRK08306 dipicolinate synthase 99.5 1.1E-13 2.4E-18 119.9 11.9 135 3-167 91-242 (296)
33 TIGR01505 tartro_sem_red 2-hyd 99.5 2.1E-13 4.7E-18 117.7 9.2 109 81-191 1-116 (291)
34 PRK11559 garR tartronate semia 99.5 2.4E-13 5.3E-18 117.5 9.2 118 80-197 3-127 (296)
35 PRK15461 NADH-dependent gamma- 99.5 3.7E-13 8.1E-18 116.7 9.8 111 80-192 2-119 (296)
36 PRK12490 6-phosphogluconate de 99.5 4.6E-13 1E-17 116.2 10.4 109 80-191 1-117 (299)
37 PF00670 AdoHcyase_NAD: S-aden 99.4 6.9E-13 1.5E-17 104.5 7.6 99 75-178 19-123 (162)
38 PRK09599 6-phosphogluconate de 99.4 1.7E-12 3.8E-17 112.7 10.2 110 80-192 1-118 (301)
39 PRK05476 S-adenosyl-L-homocyst 99.4 3.3E-12 7.1E-17 115.3 10.0 98 76-178 209-312 (425)
40 PLN02350 phosphogluconate dehy 99.4 2.9E-12 6.3E-17 117.7 9.5 116 81-197 8-138 (493)
41 PRK15059 tartronate semialdehy 99.3 6.6E-12 1.4E-16 108.7 9.6 111 80-192 1-117 (292)
42 KOG0409 Predicted dehydrogenas 99.3 1.4E-11 3.1E-16 105.0 8.4 113 77-191 33-153 (327)
43 PRK05479 ketol-acid reductoiso 99.3 1.4E-11 3.1E-16 107.9 8.4 91 75-168 13-109 (330)
44 TIGR00872 gnd_rel 6-phosphoglu 99.3 3.5E-11 7.6E-16 104.4 10.5 109 80-192 1-117 (298)
45 PTZ00142 6-phosphogluconate de 99.3 3.3E-11 7.1E-16 110.5 10.6 114 80-196 2-131 (470)
46 PLN02858 fructose-bisphosphate 99.3 2.2E-11 4.7E-16 123.6 10.2 113 78-192 3-124 (1378)
47 PLN02712 arogenate dehydrogena 99.2 2.4E-11 5.2E-16 115.7 8.8 109 73-182 363-476 (667)
48 cd00401 AdoHcyase S-adenosyl-L 99.2 5.7E-11 1.2E-15 107.0 9.7 99 75-178 198-302 (413)
49 PLN02858 fructose-bisphosphate 99.2 5.5E-11 1.2E-15 120.7 9.8 112 79-192 324-444 (1378)
50 TIGR01692 HIBADH 3-hydroxyisob 99.2 5.1E-11 1.1E-15 102.8 8.2 107 84-192 1-114 (288)
51 PLN02256 arogenate dehydrogena 99.2 2.5E-10 5.4E-15 99.4 11.3 135 77-215 34-174 (304)
52 TIGR00873 gnd 6-phosphoglucona 99.2 1.2E-10 2.7E-15 106.7 9.5 112 82-196 2-128 (467)
53 PRK14619 NAD(P)H-dependent gly 99.1 4.2E-10 9E-15 98.1 9.3 83 78-170 3-86 (308)
54 PRK15182 Vi polysaccharide bio 99.0 7E-10 1.5E-14 100.8 9.0 132 79-211 6-173 (425)
55 PRK08655 prephenate dehydrogen 99.0 8.6E-10 1.9E-14 100.5 9.7 128 80-215 1-137 (437)
56 TIGR00465 ilvC ketol-acid redu 99.0 7.7E-10 1.7E-14 96.7 8.8 92 77-171 1-98 (314)
57 COG0287 TyrA Prephenate dehydr 99.0 2.2E-09 4.8E-14 92.3 10.0 129 79-215 3-145 (279)
58 PF07991 IlvN: Acetohydroxy ac 99.0 6.5E-10 1.4E-14 87.4 6.0 86 77-164 2-93 (165)
59 PLN02712 arogenate dehydrogena 99.0 1.2E-09 2.5E-14 104.3 7.9 105 75-180 48-157 (667)
60 PRK07417 arogenate dehydrogena 99.0 1.8E-09 3.9E-14 92.8 8.4 129 80-216 1-142 (279)
61 PRK05225 ketol-acid reductoiso 99.0 5.4E-10 1.2E-14 100.7 5.1 101 64-169 21-133 (487)
62 PLN02545 3-hydroxybutyryl-CoA 99.0 1.1E-09 2.3E-14 94.8 6.4 99 80-181 5-132 (295)
63 COG0499 SAM1 S-adenosylhomocys 99.0 2.1E-09 4.5E-14 93.7 7.9 98 76-178 206-309 (420)
64 PRK09260 3-hydroxybutyryl-CoA 99.0 3.2E-09 7E-14 91.6 9.0 110 80-193 2-141 (288)
65 PF03807 F420_oxidored: NADP o 98.9 6E-10 1.3E-14 80.3 3.6 85 81-168 1-96 (96)
66 PRK14194 bifunctional 5,10-met 98.9 4.5E-09 9.8E-14 90.9 8.8 80 74-169 154-234 (301)
67 PRK08818 prephenate dehydrogen 98.9 2.6E-08 5.6E-13 88.8 13.8 121 77-214 2-130 (370)
68 PLN02688 pyrroline-5-carboxyla 98.9 6.1E-09 1.3E-13 88.7 9.4 99 80-182 1-109 (266)
69 PRK06545 prephenate dehydrogen 98.9 7.3E-09 1.6E-13 92.2 10.2 129 80-216 1-149 (359)
70 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.2E-08 2.6E-13 83.7 10.1 104 75-186 24-134 (200)
71 COG1023 Gnd Predicted 6-phosph 98.9 9.3E-09 2E-13 85.4 9.0 111 80-193 1-119 (300)
72 TIGR00518 alaDH alanine dehydr 98.9 3.4E-09 7.4E-14 94.7 7.0 91 76-166 164-267 (370)
73 PRK07502 cyclohexadienyl dehyd 98.9 9.3E-09 2E-13 89.5 9.4 134 79-217 6-155 (307)
74 PRK11064 wecC UDP-N-acetyl-D-m 98.9 1.3E-08 2.8E-13 92.3 10.2 104 80-183 4-136 (415)
75 PRK07066 3-hydroxybutyryl-CoA 98.9 1.4E-08 3.1E-13 88.9 9.4 111 80-193 8-143 (321)
76 PRK11199 tyrA bifunctional cho 98.8 2.4E-08 5.2E-13 89.4 10.4 121 35-179 67-188 (374)
77 cd01080 NAD_bind_m-THF_DH_Cycl 98.8 2E-08 4.3E-13 80.3 8.5 82 75-172 40-122 (168)
78 cd01065 NAD_bind_Shikimate_DH 98.8 2.6E-08 5.7E-13 77.6 9.0 106 76-186 16-134 (155)
79 PRK08293 3-hydroxybutyryl-CoA 98.8 3.3E-08 7.2E-13 85.3 10.3 127 80-216 4-160 (287)
80 PRK07530 3-hydroxybutyryl-CoA 98.8 1.5E-08 3.3E-13 87.6 8.0 110 80-194 5-144 (292)
81 PRK14618 NAD(P)H-dependent gly 98.8 1.8E-08 4E-13 88.4 8.5 98 79-182 4-123 (328)
82 PRK07679 pyrroline-5-carboxyla 98.8 2.5E-08 5.4E-13 85.7 8.9 100 78-181 2-112 (279)
83 PRK14188 bifunctional 5,10-met 98.8 3.1E-08 6.7E-13 85.7 8.9 79 75-170 154-234 (296)
84 PRK12491 pyrroline-5-carboxyla 98.8 1.6E-08 3.6E-13 86.7 7.1 99 79-181 2-110 (272)
85 PRK07531 bifunctional 3-hydrox 98.8 2.9E-08 6.3E-13 92.0 9.1 112 80-195 5-141 (495)
86 PRK13302 putative L-aspartate 98.8 1.7E-08 3.7E-13 86.6 7.1 104 78-186 5-118 (271)
87 TIGR03026 NDP-sugDHase nucleot 98.8 3.6E-08 7.8E-13 89.3 9.2 132 80-212 1-174 (411)
88 PRK14189 bifunctional 5,10-met 98.8 3.6E-08 7.9E-13 84.7 8.6 80 75-170 154-234 (285)
89 PRK15057 UDP-glucose 6-dehydro 98.8 4.1E-08 8.9E-13 88.3 9.4 123 80-211 1-160 (388)
90 PF00389 2-Hacid_dh: D-isomer 98.7 6.4E-09 1.4E-13 79.6 2.8 40 3-42 58-101 (133)
91 PRK00094 gpsA NAD(P)H-dependen 98.7 2.8E-08 6E-13 86.7 7.0 90 80-171 2-110 (325)
92 TIGR01724 hmd_rel H2-forming N 98.7 1.2E-07 2.5E-12 82.4 10.6 88 91-182 32-129 (341)
93 PRK08507 prephenate dehydrogen 98.7 4.2E-08 9E-13 84.1 7.4 127 80-215 1-142 (275)
94 PF01210 NAD_Gly3P_dh_N: NAD-d 98.7 2.3E-08 5.1E-13 78.8 5.3 87 81-169 1-106 (157)
95 PF01488 Shikimate_DH: Shikima 98.7 1.2E-08 2.7E-13 78.5 3.6 94 76-172 9-115 (135)
96 PF10727 Rossmann-like: Rossma 98.7 9.3E-09 2E-13 78.4 2.8 88 77-166 8-104 (127)
97 KOG1370 S-adenosylhomocysteine 98.7 3.3E-08 7.1E-13 84.7 6.3 91 76-170 211-305 (434)
98 PRK06035 3-hydroxyacyl-CoA deh 98.7 8.3E-08 1.8E-12 82.9 9.0 112 80-195 4-147 (291)
99 PRK08268 3-hydroxy-acyl-CoA de 98.7 5.1E-08 1.1E-12 90.6 7.9 113 80-197 8-150 (507)
100 PRK05472 redox-sensing transcr 98.7 1.3E-08 2.9E-13 84.1 3.6 130 33-182 58-201 (213)
101 PRK14179 bifunctional 5,10-met 98.7 1E-07 2.2E-12 81.9 8.9 80 74-169 153-233 (284)
102 PRK06129 3-hydroxyacyl-CoA deh 98.7 1.4E-07 3.1E-12 82.1 9.7 110 80-193 3-141 (308)
103 PRK09287 6-phosphogluconate de 98.7 8.1E-08 1.8E-12 88.0 8.1 107 90-197 1-120 (459)
104 PRK05808 3-hydroxybutyryl-CoA 98.6 2.1E-07 4.5E-12 80.1 10.1 100 80-182 4-132 (282)
105 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 9.8E-08 2.1E-12 88.5 8.6 114 79-197 5-148 (503)
106 PRK06130 3-hydroxybutyryl-CoA 98.6 8.6E-08 1.9E-12 83.5 7.5 99 80-181 5-128 (311)
107 PRK07819 3-hydroxybutyryl-CoA 98.6 7.8E-08 1.7E-12 83.1 6.9 112 80-195 6-147 (286)
108 PRK07680 late competence prote 98.6 1.4E-07 3E-12 80.8 8.1 98 80-181 1-109 (273)
109 PRK14175 bifunctional 5,10-met 98.6 2.1E-07 4.5E-12 80.2 8.6 79 75-169 154-233 (286)
110 PRK06476 pyrroline-5-carboxyla 98.6 1.3E-07 2.8E-12 80.3 7.1 98 80-183 1-108 (258)
111 PRK14806 bifunctional cyclohex 98.6 2E-07 4.4E-12 90.1 9.2 131 80-217 4-153 (735)
112 PRK06928 pyrroline-5-carboxyla 98.6 4.2E-07 9E-12 78.2 9.8 99 80-182 2-112 (277)
113 COG2085 Predicted dinucleotide 98.6 3E-07 6.4E-12 75.4 8.4 86 80-168 2-95 (211)
114 cd05191 NAD_bind_amino_acid_DH 98.5 7.7E-07 1.7E-11 63.1 8.5 67 75-166 19-86 (86)
115 TIGR01035 hemA glutamyl-tRNA r 98.5 5.8E-07 1.3E-11 81.6 8.2 95 76-173 177-284 (417)
116 TIGR01915 npdG NADPH-dependent 98.4 4.6E-07 1E-11 75.2 6.7 89 80-171 1-106 (219)
117 PF02882 THF_DHG_CYH_C: Tetrah 98.4 1E-06 2.2E-11 69.8 8.2 80 75-170 32-112 (160)
118 PRK13304 L-aspartate dehydroge 98.4 6.2E-07 1.3E-11 76.7 7.0 102 80-186 2-115 (265)
119 cd05212 NAD_bind_m-THF_DH_Cycl 98.4 3.6E-06 7.9E-11 65.2 10.3 80 74-169 23-103 (140)
120 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 4.4E-07 9.4E-12 73.6 5.2 132 80-211 1-171 (185)
121 PRK11880 pyrroline-5-carboxyla 98.4 8.2E-07 1.8E-11 75.6 7.1 96 80-181 3-107 (267)
122 PTZ00431 pyrroline carboxylate 98.4 1.7E-06 3.7E-11 73.7 9.0 97 79-181 3-103 (260)
123 COG0059 IlvC Ketol-acid reduct 98.4 8.5E-07 1.8E-11 76.1 7.0 91 76-168 15-110 (338)
124 PRK10792 bifunctional 5,10-met 98.4 2.6E-06 5.6E-11 73.3 9.9 77 74-166 154-231 (285)
125 PRK14192 bifunctional 5,10-met 98.3 2.6E-06 5.6E-11 73.5 9.1 80 74-169 154-234 (283)
126 cd05311 NAD_bind_2_malic_enz N 98.3 5.8E-06 1.3E-10 69.1 10.9 126 75-216 21-168 (226)
127 PRK07634 pyrroline-5-carboxyla 98.3 2.8E-06 6.1E-11 71.3 8.8 101 78-183 3-114 (245)
128 PRK08229 2-dehydropantoate 2-r 98.3 2.2E-06 4.7E-11 75.4 8.4 103 80-186 3-126 (341)
129 PRK14191 bifunctional 5,10-met 98.3 2.3E-06 5E-11 73.6 8.2 80 74-169 152-232 (285)
130 PF01262 AlaDh_PNT_C: Alanine 98.3 5E-07 1.1E-11 72.0 3.9 92 75-166 16-139 (168)
131 cd01079 NAD_bind_m-THF_DH NAD 98.3 6.7E-06 1.5E-10 66.8 10.3 90 73-169 56-159 (197)
132 PRK14178 bifunctional 5,10-met 98.3 2E-06 4.4E-11 73.7 7.6 80 74-169 147-227 (279)
133 cd05213 NAD_bind_Glutamyl_tRNA 98.3 1.3E-06 2.9E-11 76.3 6.4 94 77-172 176-279 (311)
134 PRK14176 bifunctional 5,10-met 98.3 3.3E-06 7.1E-11 72.7 8.6 78 74-167 159-237 (287)
135 TIGR00561 pntA NAD(P) transhyd 98.3 1.6E-06 3.5E-11 80.2 7.2 90 76-166 161-284 (511)
136 PRK06522 2-dehydropantoate 2-r 98.3 5.4E-06 1.2E-10 71.5 9.9 103 80-186 1-119 (304)
137 PLN00203 glutamyl-tRNA reducta 98.3 9.7E-07 2.1E-11 82.0 5.5 94 76-172 263-375 (519)
138 PRK12557 H(2)-dependent methyl 98.3 4.3E-06 9.4E-11 74.0 9.4 90 91-181 32-132 (342)
139 PRK00045 hemA glutamyl-tRNA re 98.3 1.3E-06 2.9E-11 79.4 6.3 94 76-172 179-286 (423)
140 PRK12921 2-dehydropantoate 2-r 98.3 2.9E-06 6.3E-11 73.3 8.1 103 80-186 1-121 (305)
141 PF02737 3HCDH_N: 3-hydroxyacy 98.3 1.4E-06 3.1E-11 70.3 5.7 109 81-193 1-138 (180)
142 KOG2380 Prephenate dehydrogena 98.3 1.8E-06 3.8E-11 75.3 5.9 104 78-182 51-159 (480)
143 PLN02353 probable UDP-glucose 98.2 9.2E-06 2E-10 74.9 10.9 130 80-211 2-176 (473)
144 COG0240 GpsA Glycerol-3-phosph 98.2 2.2E-06 4.9E-11 74.8 6.4 95 80-176 2-115 (329)
145 COG0362 Gnd 6-phosphogluconate 98.2 1E-05 2.2E-10 71.9 10.3 117 79-196 3-132 (473)
146 COG0345 ProC Pyrroline-5-carbo 98.2 2.8E-06 6E-11 72.5 6.7 94 80-181 2-108 (266)
147 PRK14183 bifunctional 5,10-met 98.2 6.9E-06 1.5E-10 70.5 8.6 79 74-168 152-231 (281)
148 TIGR03376 glycerol3P_DH glycer 98.2 7.5E-06 1.6E-10 72.5 8.9 90 81-172 1-122 (342)
149 COG0686 Ald Alanine dehydrogen 98.2 1.9E-06 4.2E-11 74.3 4.9 90 77-166 166-268 (371)
150 PRK14170 bifunctional 5,10-met 98.2 1.6E-05 3.5E-10 68.3 10.1 81 74-170 152-233 (284)
151 PRK06141 ornithine cyclodeamin 98.2 4.9E-06 1.1E-10 72.9 6.8 84 78-167 124-220 (314)
152 PRK14190 bifunctional 5,10-met 98.2 1.5E-05 3.2E-10 68.7 9.6 81 74-170 153-234 (284)
153 PTZ00345 glycerol-3-phosphate 98.1 1.1E-05 2.4E-10 71.9 8.9 93 79-173 11-136 (365)
154 PRK14171 bifunctional 5,10-met 98.1 2.1E-05 4.6E-10 67.8 9.9 77 75-167 155-232 (288)
155 PRK14177 bifunctional 5,10-met 98.1 1.6E-05 3.4E-10 68.5 8.9 79 74-168 154-233 (284)
156 COG0677 WecC UDP-N-acetyl-D-ma 98.1 2.6E-05 5.6E-10 69.4 10.4 128 80-210 10-180 (436)
157 PRK00258 aroE shikimate 5-dehy 98.1 6.2E-06 1.3E-10 70.9 6.2 110 74-185 118-238 (278)
158 PRK14172 bifunctional 5,10-met 98.1 2.5E-05 5.4E-10 67.0 9.8 79 75-169 154-233 (278)
159 PRK14173 bifunctional 5,10-met 98.1 1.8E-05 3.9E-10 68.2 8.9 81 74-170 150-231 (287)
160 PRK14186 bifunctional 5,10-met 98.1 2.8E-05 6E-10 67.4 10.1 81 74-170 153-234 (297)
161 PRK00676 hemA glutamyl-tRNA re 98.1 1.6E-05 3.5E-10 70.0 8.5 92 76-172 171-267 (338)
162 PRK14166 bifunctional 5,10-met 98.1 1.9E-05 4.2E-10 67.9 8.7 79 74-168 152-231 (282)
163 PRK14169 bifunctional 5,10-met 98.1 2E-05 4.2E-10 67.8 8.8 80 74-169 151-231 (282)
164 TIGR02371 ala_DH_arch alanine 98.1 7.7E-06 1.7E-10 72.0 6.0 84 79-168 128-224 (325)
165 COG0190 FolD 5,10-methylene-te 98.1 1.6E-05 3.6E-10 67.9 7.7 82 75-172 152-234 (283)
166 TIGR00507 aroE shikimate 5-deh 98.0 3E-05 6.5E-10 66.4 9.3 105 77-186 115-232 (270)
167 PRK14180 bifunctional 5,10-met 98.0 2.5E-05 5.5E-10 67.1 8.7 78 74-167 153-231 (282)
168 PRK14187 bifunctional 5,10-met 98.0 2.6E-05 5.6E-10 67.4 8.7 80 74-169 155-235 (294)
169 PRK13940 glutamyl-tRNA reducta 98.0 2.4E-05 5.2E-10 71.0 8.8 89 76-169 178-276 (414)
170 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.2E-05 2.7E-10 65.2 6.3 95 75-173 24-136 (194)
171 PRK12439 NAD(P)H-dependent gly 98.0 1.3E-05 2.7E-10 71.0 6.7 89 80-171 8-116 (341)
172 PLN02516 methylenetetrahydrofo 98.0 3E-05 6.5E-10 67.2 8.7 80 74-169 162-242 (299)
173 PLN02616 tetrahydrofolate dehy 98.0 2.9E-05 6.3E-10 68.6 8.5 80 74-169 226-306 (364)
174 PRK14182 bifunctional 5,10-met 98.0 3.5E-05 7.6E-10 66.2 8.8 80 74-169 152-232 (282)
175 PRK14193 bifunctional 5,10-met 98.0 3.6E-05 7.7E-10 66.3 8.7 81 74-170 153-236 (284)
176 PLN02897 tetrahydrofolate dehy 98.0 3.2E-05 7E-10 68.0 8.4 80 74-169 209-289 (345)
177 PRK14620 NAD(P)H-dependent gly 98.0 3.2E-05 6.9E-10 67.8 8.4 88 80-169 1-109 (326)
178 PRK14181 bifunctional 5,10-met 98.0 4.1E-05 9E-10 66.0 8.7 80 74-169 148-232 (287)
179 TIGR02354 thiF_fam2 thiamine b 98.0 5.1E-05 1.1E-09 62.3 8.9 91 75-166 17-145 (200)
180 TIGR01546 GAPDH-II_archae glyc 98.0 2.2E-05 4.9E-10 69.1 7.1 83 82-167 1-109 (333)
181 cd05313 NAD_bind_2_Glu_DH NAD( 98.0 0.00012 2.7E-09 62.1 11.3 105 75-186 34-172 (254)
182 COG0373 HemA Glutamyl-tRNA red 97.9 1.6E-05 3.4E-10 71.7 6.1 95 76-173 175-281 (414)
183 PRK07340 ornithine cyclodeamin 97.9 2.1E-05 4.6E-10 68.6 6.4 85 77-168 123-219 (304)
184 PF13380 CoA_binding_2: CoA bi 97.9 9.3E-05 2E-09 55.5 8.9 100 80-186 1-104 (116)
185 PRK06249 2-dehydropantoate 2-r 97.9 6E-05 1.3E-09 65.8 8.9 108 79-189 5-128 (313)
186 PRK09424 pntA NAD(P) transhydr 97.9 2E-05 4.4E-10 73.1 6.2 92 76-167 162-286 (509)
187 PRK14168 bifunctional 5,10-met 97.9 6.1E-05 1.3E-09 65.3 8.6 80 74-169 156-240 (297)
188 PRK14185 bifunctional 5,10-met 97.9 6.4E-05 1.4E-09 65.0 8.6 80 74-169 152-236 (293)
189 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 0.00034 7.3E-09 58.2 12.4 104 75-186 19-145 (217)
190 cd01076 NAD_bind_1_Glu_DH NAD( 97.9 0.00043 9.4E-09 57.9 13.1 104 75-186 27-154 (227)
191 PF13241 NAD_binding_7: Putati 97.9 1.1E-05 2.3E-10 59.2 2.9 86 76-166 4-91 (103)
192 PRK14982 acyl-ACP reductase; P 97.9 5.6E-05 1.2E-09 66.8 7.7 95 74-174 150-254 (340)
193 PRK14184 bifunctional 5,10-met 97.8 7.5E-05 1.6E-09 64.4 8.0 78 74-167 152-234 (286)
194 PRK14174 bifunctional 5,10-met 97.8 8.9E-05 1.9E-09 64.2 8.3 80 74-169 154-238 (295)
195 PLN02477 glutamate dehydrogena 97.8 0.00044 9.6E-09 62.6 13.0 104 75-186 202-329 (410)
196 PRK14167 bifunctional 5,10-met 97.8 0.00011 2.5E-09 63.6 8.6 79 75-169 153-236 (297)
197 COG1712 Predicted dinucleotide 97.8 6.9E-05 1.5E-09 62.0 6.8 92 80-176 1-101 (255)
198 PRK08618 ornithine cyclodeamin 97.8 4.9E-05 1.1E-09 66.9 6.3 83 78-167 126-222 (325)
199 TIGR02992 ectoine_eutC ectoine 97.8 7.6E-05 1.7E-09 65.7 7.3 83 79-167 129-225 (326)
200 PRK06046 alanine dehydrogenase 97.7 8E-05 1.7E-09 65.5 6.9 82 79-167 129-224 (326)
201 PRK13301 putative L-aspartate 97.7 0.00016 3.4E-09 61.6 8.2 99 79-182 2-112 (267)
202 PRK06444 prephenate dehydrogen 97.7 0.00015 3.2E-09 59.4 7.6 62 80-170 1-63 (197)
203 PF02153 PDH: Prephenate dehyd 97.7 0.00011 2.5E-09 62.5 7.1 120 94-216 1-133 (258)
204 COG1748 LYS9 Saccharopine dehy 97.7 0.00011 2.5E-09 65.8 7.2 99 80-185 2-117 (389)
205 PF02423 OCD_Mu_crystall: Orni 97.7 5.4E-05 1.2E-09 66.3 5.0 88 79-170 128-228 (313)
206 PRK09414 glutamate dehydrogena 97.7 0.00057 1.2E-08 62.5 11.7 106 74-186 227-362 (445)
207 PRK09310 aroDE bifunctional 3- 97.7 0.00016 3.6E-09 66.8 8.3 100 74-185 327-433 (477)
208 PRK08291 ectoine utilization p 97.7 8.8E-05 1.9E-09 65.4 6.2 82 79-166 132-227 (330)
209 PRK12549 shikimate 5-dehydroge 97.7 0.00011 2.5E-09 63.4 6.7 104 76-184 124-243 (284)
210 KOG2653 6-phosphogluconate deh 97.7 0.0002 4.2E-09 63.1 8.0 117 80-197 7-136 (487)
211 PRK11730 fadB multifunctional 97.7 0.00019 4.1E-09 69.5 8.7 111 80-194 314-453 (715)
212 PRK06823 ornithine cyclodeamin 97.7 0.00013 2.9E-09 63.9 7.0 83 79-167 128-223 (315)
213 PRK13303 L-aspartate dehydroge 97.6 0.00027 5.9E-09 60.4 8.7 102 80-186 2-115 (265)
214 COG2423 Predicted ornithine cy 97.6 0.00022 4.9E-09 62.7 8.2 83 79-167 130-226 (330)
215 COG1250 FadB 3-hydroxyacyl-CoA 97.6 0.00035 7.6E-09 60.9 9.3 113 79-196 3-145 (307)
216 PRK14030 glutamate dehydrogena 97.6 0.00081 1.8E-08 61.4 11.8 111 74-192 223-367 (445)
217 PF01113 DapB_N: Dihydrodipico 97.6 0.0004 8.8E-09 52.5 8.3 98 80-183 1-115 (124)
218 PTZ00117 malate dehydrogenase; 97.6 0.00036 7.8E-09 61.3 9.1 112 77-189 3-147 (319)
219 COG1064 AdhP Zn-dependent alco 97.6 0.00017 3.7E-09 63.5 6.8 83 78-166 166-259 (339)
220 PRK06199 ornithine cyclodeamin 97.6 0.00017 3.8E-09 64.7 6.8 88 79-169 155-262 (379)
221 COG0026 PurK Phosphoribosylami 97.6 0.00018 3.9E-09 63.6 6.6 59 79-137 1-69 (375)
222 smart00859 Semialdhyde_dh Semi 97.6 0.00028 6.1E-09 52.9 6.7 85 81-167 1-100 (122)
223 TIGR01470 cysG_Nterm siroheme 97.6 0.00015 3.2E-09 59.8 5.6 67 73-139 3-78 (205)
224 COG1004 Ugd Predicted UDP-gluc 97.6 0.00064 1.4E-08 60.8 9.8 131 80-211 1-169 (414)
225 PRK08306 dipicolinate synthase 97.6 0.00099 2.2E-08 57.9 10.9 110 78-194 1-122 (296)
226 TIGR01921 DAP-DH diaminopimela 97.5 0.00029 6.2E-09 61.9 7.3 103 79-186 3-115 (324)
227 TIGR02437 FadB fatty oxidation 97.5 0.00041 8.9E-09 67.2 9.0 111 80-194 314-453 (714)
228 PRK06718 precorrin-2 dehydroge 97.5 0.00026 5.6E-09 58.2 6.6 70 72-141 3-81 (202)
229 TIGR02441 fa_ox_alpha_mit fatt 97.5 0.00032 6.9E-09 68.2 8.2 111 80-194 336-475 (737)
230 PRK11154 fadJ multifunctional 97.5 0.0004 8.7E-09 67.2 8.8 111 80-194 310-450 (708)
231 KOG0023 Alcohol dehydrogenase, 97.5 0.00016 3.4E-09 62.9 5.4 106 78-186 181-323 (360)
232 TIGR01763 MalateDH_bact malate 97.5 0.00036 7.8E-09 60.9 7.6 111 80-191 2-147 (305)
233 PRK14031 glutamate dehydrogena 97.5 0.0015 3.2E-08 59.8 11.7 106 74-186 223-361 (444)
234 PRK06407 ornithine cyclodeamin 97.5 0.00029 6.3E-09 61.4 6.7 83 79-167 117-213 (301)
235 PF00185 OTCace: Aspartate/orn 97.5 0.001 2.2E-08 52.5 9.0 96 78-173 1-130 (158)
236 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00014 2.9E-09 54.0 3.8 100 81-185 2-114 (120)
237 PF00208 ELFV_dehydrog: Glutam 97.4 0.00082 1.8E-08 56.8 8.8 104 76-186 29-165 (244)
238 TIGR02440 FadJ fatty oxidation 97.4 0.0007 1.5E-08 65.5 9.4 111 80-194 305-445 (699)
239 PRK07589 ornithine cyclodeamin 97.4 0.00044 9.5E-09 61.4 6.6 85 79-167 129-226 (346)
240 PRK00048 dihydrodipicolinate r 97.4 0.0013 2.9E-08 55.9 9.2 60 80-139 2-69 (257)
241 PTZ00079 NADP-specific glutama 97.3 0.0058 1.3E-07 55.9 13.5 106 74-186 232-371 (454)
242 TIGR02356 adenyl_thiF thiazole 97.3 0.0002 4.2E-09 58.8 3.7 37 75-111 17-54 (202)
243 COG5322 Predicted dehydrogenas 97.3 0.00065 1.4E-08 57.8 6.6 97 73-174 161-269 (351)
244 cd00650 LDH_MDH_like NAD-depen 97.3 0.0007 1.5E-08 57.7 6.8 111 82-192 1-148 (263)
245 PF01118 Semialdhyde_dh: Semia 97.3 0.0008 1.7E-08 50.5 6.2 83 81-168 1-99 (121)
246 COG0334 GdhA Glutamate dehydro 97.3 0.0013 2.9E-08 59.0 8.3 101 75-183 203-328 (411)
247 TIGR02964 xanthine_xdhC xanthi 97.2 0.0024 5.1E-08 54.1 9.3 90 79-186 100-189 (246)
248 TIGR01809 Shik-DH-AROM shikima 97.2 0.00028 6E-09 60.9 3.7 66 76-141 122-201 (282)
249 PRK12548 shikimate 5-dehydroge 97.2 0.0011 2.4E-08 57.3 7.4 92 76-169 123-239 (289)
250 PRK00856 pyrB aspartate carbam 97.2 0.0036 7.7E-08 54.7 10.5 99 76-174 153-273 (305)
251 PRK00683 murD UDP-N-acetylmura 97.2 0.0013 2.9E-08 59.7 7.9 104 79-182 3-126 (418)
252 cd05291 HicDH_like L-2-hydroxy 97.2 0.0015 3.4E-08 56.9 8.0 87 80-166 1-117 (306)
253 cd00757 ThiF_MoeB_HesA_family 97.2 0.0011 2.4E-08 55.4 6.6 88 75-166 17-143 (228)
254 PF02558 ApbA: Ketopantoate re 97.2 0.00053 1.1E-08 53.0 4.4 105 82-190 1-124 (151)
255 PRK12475 thiamine/molybdopteri 97.2 0.00095 2.1E-08 59.1 6.5 78 75-153 20-138 (338)
256 PRK05690 molybdopterin biosynt 97.2 0.00082 1.8E-08 56.9 5.7 37 75-111 28-65 (245)
257 PRK00066 ldh L-lactate dehydro 97.2 0.0022 4.7E-08 56.3 8.4 89 78-166 5-122 (315)
258 KOG2304 3-hydroxyacyl-CoA dehy 97.1 0.00014 2.9E-09 60.5 0.7 117 77-197 9-160 (298)
259 COG0569 TrkA K+ transport syst 97.1 0.00058 1.3E-08 57.0 4.5 63 80-142 1-78 (225)
260 PRK06719 precorrin-2 dehydroge 97.1 0.0012 2.6E-08 52.1 5.8 69 71-139 5-79 (157)
261 PRK06223 malate dehydrogenase; 97.1 0.0021 4.5E-08 55.9 7.9 108 80-189 3-144 (307)
262 PRK05708 2-dehydropantoate 2-r 97.1 0.0025 5.4E-08 55.5 8.3 107 80-189 3-126 (305)
263 COG0771 MurD UDP-N-acetylmuram 97.1 0.0034 7.4E-08 57.4 9.3 121 77-197 5-157 (448)
264 TIGR02717 AcCoA-syn-alpha acet 97.1 0.0077 1.7E-07 55.3 11.7 109 77-188 5-125 (447)
265 PRK06019 phosphoribosylaminoim 97.1 0.0015 3.3E-08 58.4 6.7 59 79-137 2-70 (372)
266 PTZ00082 L-lactate dehydrogena 97.1 0.0023 4.9E-08 56.3 7.7 112 77-189 4-153 (321)
267 KOG2711 Glycerol-3-phosphate d 97.0 0.0035 7.6E-08 55.0 8.2 91 77-169 19-142 (372)
268 PRK01710 murD UDP-N-acetylmura 97.0 0.0043 9.3E-08 57.0 9.1 109 76-185 11-144 (458)
269 TIGR01850 argC N-acetyl-gamma- 97.0 0.0029 6.2E-08 56.2 7.6 87 80-172 1-105 (346)
270 TIGR00036 dapB dihydrodipicoli 97.0 0.0056 1.2E-07 52.4 9.0 60 80-139 2-77 (266)
271 PRK09496 trkA potassium transp 97.0 0.0022 4.8E-08 58.4 6.9 64 80-143 1-78 (453)
272 PRK04207 glyceraldehyde-3-phos 96.9 0.0033 7.1E-08 55.8 7.7 62 80-141 2-89 (341)
273 TIGR02355 moeB molybdopterin s 96.9 0.0034 7.3E-08 53.0 7.3 80 75-155 20-138 (240)
274 PRK12749 quinate/shikimate deh 96.9 0.0075 1.6E-07 52.2 9.6 107 75-185 120-250 (288)
275 TIGR02853 spore_dpaA dipicolin 96.9 0.013 2.9E-07 50.6 11.1 109 79-194 1-121 (287)
276 PF13478 XdhC_C: XdhC Rossmann 96.9 0.0026 5.7E-08 49.0 5.9 85 82-189 1-85 (136)
277 PF02254 TrkA_N: TrkA-N domain 96.9 0.0014 3E-08 48.3 4.2 80 82-163 1-93 (116)
278 TIGR00670 asp_carb_tr aspartat 96.9 0.011 2.4E-07 51.5 10.3 97 76-172 147-270 (301)
279 COG1648 CysG Siroheme synthase 96.9 0.0016 3.5E-08 53.9 4.7 88 72-165 5-102 (210)
280 cd05297 GH4_alpha_glucosidase_ 96.9 0.0019 4E-08 59.0 5.6 61 80-140 1-84 (423)
281 PLN02968 Probable N-acetyl-gam 96.9 0.0027 5.9E-08 57.1 6.5 96 77-178 36-146 (381)
282 cd05293 LDH_1 A subgroup of L- 96.9 0.0038 8.2E-08 54.7 7.3 108 80-188 4-144 (312)
283 cd01339 LDH-like_MDH L-lactate 96.8 0.0029 6.4E-08 54.9 6.4 57 82-139 1-75 (300)
284 PRK06270 homoserine dehydrogen 96.8 0.0087 1.9E-07 53.0 9.3 107 80-186 3-146 (341)
285 PRK00779 ornithine carbamoyltr 96.8 0.016 3.4E-07 50.6 10.7 92 76-167 149-266 (304)
286 cd00762 NAD_bind_malic_enz NAD 96.8 0.027 5.9E-07 47.8 11.6 154 38-216 4-195 (254)
287 PLN02527 aspartate carbamoyltr 96.8 0.016 3.4E-07 50.7 10.4 96 76-171 148-272 (306)
288 PRK00436 argC N-acetyl-gamma-g 96.8 0.0044 9.6E-08 55.0 7.1 89 80-173 3-106 (343)
289 cd05292 LDH_2 A subgroup of L- 96.7 0.0031 6.6E-08 55.1 5.8 60 80-140 1-77 (308)
290 PRK05600 thiamine biosynthesis 96.7 0.0026 5.7E-08 57.0 5.4 80 75-155 37-155 (370)
291 PRK08223 hypothetical protein; 96.7 0.0071 1.5E-07 52.3 7.7 37 75-111 23-60 (287)
292 COG0169 AroE Shikimate 5-dehyd 96.7 0.0081 1.8E-07 51.9 8.0 105 75-183 122-242 (283)
293 PRK08269 3-hydroxybutyryl-CoA 96.7 0.011 2.3E-07 51.9 8.8 90 90-181 1-128 (314)
294 cd05312 NAD_bind_1_malic_enz N 96.7 0.059 1.3E-06 46.4 13.1 152 38-216 4-194 (279)
295 PF00056 Ldh_1_N: lactate/mala 96.7 0.0014 3E-08 50.7 2.8 87 80-166 1-118 (141)
296 PRK05597 molybdopterin biosynt 96.7 0.0035 7.5E-08 55.9 5.7 37 75-111 24-61 (355)
297 TIGR01761 thiaz-red thiazoliny 96.7 0.013 2.9E-07 52.0 9.3 105 79-186 3-117 (343)
298 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.0029 6.2E-08 46.5 4.3 75 90-165 18-100 (106)
299 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.0058 1.3E-07 50.0 6.5 37 75-111 17-54 (197)
300 PRK07688 thiamine/molybdopteri 96.6 0.0042 9.1E-08 55.1 6.0 37 75-111 20-57 (339)
301 PLN02342 ornithine carbamoyltr 96.6 0.025 5.4E-07 50.3 10.9 92 76-167 191-308 (348)
302 PRK02255 putrescine carbamoylt 96.6 0.021 4.5E-07 50.6 10.3 92 76-167 151-273 (338)
303 PRK03659 glutathione-regulated 96.6 0.003 6.5E-08 60.1 5.4 87 79-167 400-499 (601)
304 PF02629 CoA_binding: CoA bind 96.6 0.006 1.3E-07 43.9 5.6 69 79-148 3-79 (96)
305 PF00899 ThiF: ThiF family; I 96.6 0.004 8.7E-08 47.5 4.9 33 79-111 2-35 (135)
306 PRK07411 hypothetical protein; 96.6 0.004 8.7E-08 56.2 5.7 83 75-158 34-155 (390)
307 TIGR03026 NDP-sugDHase nucleot 96.6 0.017 3.6E-07 52.4 9.7 87 76-165 310-409 (411)
308 COG0540 PyrB Aspartate carbamo 96.6 0.0091 2E-07 51.8 7.4 90 77-166 156-272 (316)
309 PRK08644 thiamine biosynthesis 96.6 0.012 2.6E-07 48.7 8.0 37 75-111 24-61 (212)
310 PRK14106 murD UDP-N-acetylmura 96.6 0.015 3.3E-07 53.0 9.5 108 76-183 2-133 (450)
311 cd00755 YgdL_like Family of ac 96.6 0.039 8.4E-07 46.3 11.1 121 75-198 7-184 (231)
312 PLN02520 bifunctional 3-dehydr 96.6 0.005 1.1E-07 57.7 6.3 91 76-169 376-478 (529)
313 PF13460 NAD_binding_10: NADH( 96.5 0.0034 7.3E-08 49.7 4.4 61 82-142 1-72 (183)
314 PRK10637 cysG siroheme synthas 96.5 0.0049 1.1E-07 56.8 5.8 90 72-166 5-103 (457)
315 PRK01713 ornithine carbamoyltr 96.5 0.022 4.7E-07 50.4 9.6 92 76-167 153-276 (334)
316 PRK06349 homoserine dehydrogen 96.5 0.019 4.1E-07 52.4 9.4 103 80-186 4-125 (426)
317 PRK10669 putative cation:proto 96.5 0.004 8.7E-08 58.7 5.2 83 80-164 418-513 (558)
318 TIGR01381 E1_like_apg7 E1-like 96.5 0.012 2.5E-07 56.1 8.1 65 31-109 304-369 (664)
319 PRK03562 glutathione-regulated 96.5 0.0046 1E-07 59.1 5.5 84 79-164 400-496 (621)
320 PLN02948 phosphoribosylaminoim 96.5 0.0079 1.7E-07 57.0 7.0 65 75-139 18-92 (577)
321 TIGR00658 orni_carb_tr ornithi 96.5 0.031 6.7E-07 48.8 10.2 91 77-167 146-265 (304)
322 PRK01390 murD UDP-N-acetylmura 96.4 0.0079 1.7E-07 55.2 6.7 109 76-184 6-140 (460)
323 PRK02102 ornithine carbamoyltr 96.4 0.016 3.4E-07 51.3 8.2 92 76-167 152-274 (331)
324 PF03435 Saccharop_dh: Sacchar 96.4 0.0035 7.5E-08 56.2 4.2 59 82-140 1-77 (386)
325 PLN02353 probable UDP-glucose 96.4 0.022 4.7E-07 52.8 9.4 98 76-177 321-456 (473)
326 PRK11579 putative oxidoreducta 96.4 0.0058 1.3E-07 54.0 5.5 62 80-141 5-75 (346)
327 PRK08762 molybdopterin biosynt 96.4 0.0051 1.1E-07 55.2 5.1 37 75-111 131-168 (376)
328 PRK08328 hypothetical protein; 96.4 0.011 2.5E-07 49.4 6.9 37 75-111 23-60 (231)
329 PRK02472 murD UDP-N-acetylmura 96.4 0.012 2.5E-07 53.7 7.6 109 76-184 2-134 (447)
330 PRK14027 quinate/shikimate deh 96.4 0.0087 1.9E-07 51.7 6.3 104 76-183 124-245 (283)
331 PRK13814 pyrB aspartate carbam 96.4 0.045 9.8E-07 47.9 10.7 92 76-167 154-265 (310)
332 TIGR01161 purK phosphoribosyla 96.3 0.0081 1.8E-07 53.2 6.0 56 81-136 1-66 (352)
333 PRK03369 murD UDP-N-acetylmura 96.3 0.006 1.3E-07 56.6 5.3 107 77-183 10-142 (488)
334 PRK04284 ornithine carbamoyltr 96.3 0.019 4.1E-07 50.8 8.1 92 76-167 152-275 (332)
335 PRK07877 hypothetical protein; 96.3 0.016 3.5E-07 56.1 8.3 81 75-157 103-222 (722)
336 COG1893 ApbA Ketopantoate redu 96.3 0.033 7.2E-07 48.7 9.5 104 80-186 1-120 (307)
337 PRK02006 murD UDP-N-acetylmura 96.3 0.012 2.6E-07 54.6 7.1 110 77-186 5-149 (498)
338 COG4007 Predicted dehydrogenas 96.3 0.023 4.9E-07 48.3 7.9 86 91-180 33-128 (340)
339 PRK07878 molybdopterin biosynt 96.3 0.014 3E-07 52.8 7.1 79 75-154 38-155 (392)
340 PRK09496 trkA potassium transp 96.2 0.014 3.1E-07 53.1 7.0 87 77-165 229-330 (453)
341 COG1004 Ugd Predicted UDP-gluc 96.2 0.02 4.2E-07 51.5 7.5 84 77-164 308-406 (414)
342 PRK03515 ornithine carbamoyltr 96.2 0.021 4.6E-07 50.5 7.7 92 76-167 153-276 (336)
343 PRK11891 aspartate carbamoyltr 96.2 0.034 7.3E-07 50.8 9.1 91 76-166 238-355 (429)
344 PLN02819 lysine-ketoglutarate 96.2 0.012 2.5E-07 59.2 6.6 65 77-141 567-659 (1042)
345 PRK05562 precorrin-2 dehydroge 96.2 0.0095 2E-07 49.7 5.1 69 71-139 17-94 (223)
346 PRK15182 Vi polysaccharide bio 96.2 0.075 1.6E-06 48.6 11.3 95 74-171 309-417 (425)
347 PRK05678 succinyl-CoA syntheta 96.1 0.078 1.7E-06 46.0 10.8 105 79-187 8-119 (291)
348 TIGR01019 sucCoAalpha succinyl 96.1 0.06 1.3E-06 46.7 9.8 104 79-186 6-116 (286)
349 cd01487 E1_ThiF_like E1_ThiF_l 96.1 0.018 4E-07 46.0 6.3 32 81-112 1-33 (174)
350 PRK00141 murD UDP-N-acetylmura 96.1 0.011 2.3E-07 54.7 5.6 110 75-184 11-147 (473)
351 cd05188 MDR Medium chain reduc 96.1 0.07 1.5E-06 44.1 10.0 91 77-172 133-238 (271)
352 cd01486 Apg7 Apg7 is an E1-lik 96.1 0.024 5.1E-07 49.4 7.2 82 81-166 1-140 (307)
353 PRK04690 murD UDP-N-acetylmura 96.1 0.017 3.7E-07 53.4 6.8 107 77-183 6-140 (468)
354 PRK08300 acetaldehyde dehydrog 96.0 0.022 4.7E-07 49.7 7.0 83 79-166 4-101 (302)
355 PRK06392 homoserine dehydrogen 96.0 0.052 1.1E-06 47.9 9.4 106 80-186 1-137 (326)
356 COG2910 Putative NADH-flavin r 96.0 0.035 7.5E-07 45.0 7.3 62 80-141 1-73 (211)
357 PRK08324 short chain dehydroge 96.0 0.0078 1.7E-07 58.1 4.4 106 1-113 342-457 (681)
358 cd01483 E1_enzyme_family Super 95.9 0.1 2.3E-06 39.9 9.8 32 81-112 1-33 (143)
359 PF04016 DUF364: Domain of unk 95.9 0.022 4.9E-07 44.4 6.0 85 77-167 9-96 (147)
360 PF05222 AlaDh_PNT_N: Alanine 95.9 0.075 1.6E-06 40.9 8.8 93 93-195 18-119 (136)
361 PRK12550 shikimate 5-dehydroge 95.9 0.019 4.1E-07 49.4 5.9 100 79-183 122-231 (272)
362 PRK14874 aspartate-semialdehyd 95.9 0.025 5.4E-07 50.0 6.8 84 79-167 1-95 (334)
363 COG2344 AT-rich DNA-binding pr 95.9 0.0089 1.9E-07 48.3 3.5 62 80-141 85-157 (211)
364 PRK09880 L-idonate 5-dehydroge 95.9 0.034 7.4E-07 48.8 7.6 85 78-167 169-267 (343)
365 PRK05086 malate dehydrogenase; 95.9 0.038 8.2E-07 48.4 7.8 90 80-169 1-121 (312)
366 COG0673 MviM Predicted dehydro 95.8 0.019 4.1E-07 50.1 5.8 63 79-141 3-78 (342)
367 TIGR03316 ygeW probable carbam 95.8 0.071 1.5E-06 47.6 9.3 92 76-167 167-314 (357)
368 PRK11863 N-acetyl-gamma-glutam 95.8 0.034 7.4E-07 48.8 7.1 78 79-166 2-81 (313)
369 cd00300 LDH_like L-lactate deh 95.8 0.038 8.3E-07 48.0 7.4 85 82-166 1-115 (300)
370 PRK14804 ornithine carbamoyltr 95.8 0.077 1.7E-06 46.5 9.2 62 76-137 150-225 (311)
371 PRK00421 murC UDP-N-acetylmura 95.8 0.027 5.9E-07 51.7 6.8 108 77-184 5-133 (461)
372 CHL00194 ycf39 Ycf39; Provisio 95.8 0.02 4.3E-07 49.8 5.6 60 80-139 1-73 (317)
373 cd08230 glucose_DH Glucose deh 95.7 0.023 5E-07 50.0 6.0 85 78-167 172-270 (355)
374 TIGR01202 bchC 2-desacetyl-2-h 95.7 0.024 5.1E-07 49.1 5.9 85 78-167 144-232 (308)
375 PRK04148 hypothetical protein; 95.7 0.019 4.2E-07 44.1 4.7 62 78-140 16-87 (134)
376 TIGR01851 argC_other N-acetyl- 95.7 0.038 8.2E-07 48.3 7.1 77 80-166 2-80 (310)
377 PRK07232 bifunctional malic en 95.7 0.29 6.2E-06 47.9 13.7 93 73-170 179-288 (752)
378 PRK12862 malic enzyme; Reviewe 95.7 0.21 4.6E-06 48.9 12.9 93 73-170 187-296 (763)
379 COG0281 SfcA Malic enzyme [Ene 95.7 0.11 2.3E-06 47.1 10.0 128 73-216 193-342 (432)
380 PRK01368 murD UDP-N-acetylmura 95.7 0.022 4.9E-07 52.4 6.0 106 78-184 5-130 (454)
381 PF03447 NAD_binding_3: Homose 95.7 0.0073 1.6E-07 44.8 2.3 95 86-185 1-112 (117)
382 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.038 8.3E-07 50.3 7.4 68 74-141 315-397 (415)
383 PLN02602 lactate dehydrogenase 95.7 0.03 6.4E-07 49.9 6.5 86 80-166 38-154 (350)
384 PRK04308 murD UDP-N-acetylmura 95.7 0.032 7E-07 50.9 6.9 109 77-185 3-137 (445)
385 PRK08192 aspartate carbamoyltr 95.7 0.079 1.7E-06 47.0 9.0 92 76-167 156-275 (338)
386 PLN02383 aspartate semialdehyd 95.6 0.05 1.1E-06 48.3 7.6 83 78-166 6-100 (344)
387 PLN00106 malate dehydrogenase 95.6 0.043 9.4E-07 48.3 7.1 92 78-169 17-138 (323)
388 PRK12562 ornithine carbamoyltr 95.6 0.09 2E-06 46.5 9.1 93 76-168 153-277 (334)
389 TIGR01532 E4PD_g-proteo D-eryt 95.6 0.034 7.3E-07 49.1 6.3 29 81-109 1-33 (325)
390 COG3288 PntA NAD/NADP transhyd 95.6 0.024 5.3E-07 49.2 5.2 91 75-166 160-281 (356)
391 cd05294 LDH-like_MDH_nadp A la 95.5 0.07 1.5E-06 46.7 8.2 59 80-139 1-81 (309)
392 PRK07806 short chain dehydroge 95.5 0.059 1.3E-06 44.6 7.4 36 77-112 4-40 (248)
393 PRK07200 aspartate/ornithine c 95.5 0.13 2.8E-06 46.5 9.9 92 76-167 184-331 (395)
394 TIGR03366 HpnZ_proposed putati 95.5 0.045 9.7E-07 46.6 6.7 85 78-167 120-219 (280)
395 TIGR03215 ac_ald_DH_ac acetald 95.4 0.068 1.5E-06 46.3 7.5 83 80-167 2-96 (285)
396 PRK03803 murD UDP-N-acetylmura 95.4 0.034 7.4E-07 50.8 6.0 106 78-183 5-133 (448)
397 PLN02586 probable cinnamyl alc 95.4 0.1 2.3E-06 46.2 8.9 84 78-166 183-278 (360)
398 PRK14851 hypothetical protein; 95.4 0.048 1E-06 52.7 7.1 36 75-110 39-75 (679)
399 cd05290 LDH_3 A subgroup of L- 95.4 0.038 8.2E-07 48.3 5.9 59 81-139 1-77 (307)
400 PF00070 Pyr_redox: Pyridine n 95.4 0.039 8.6E-07 37.9 4.9 35 81-115 1-35 (80)
401 PRK08374 homoserine dehydrogen 95.3 0.13 2.8E-06 45.5 9.0 114 80-198 3-156 (336)
402 cd08237 ribitol-5-phosphate_DH 95.2 0.07 1.5E-06 46.8 7.3 88 78-167 163-257 (341)
403 cd01337 MDH_glyoxysomal_mitoch 95.2 0.11 2.4E-06 45.5 8.4 88 80-168 1-119 (310)
404 PRK10206 putative oxidoreducta 95.2 0.035 7.5E-07 49.2 5.3 62 80-141 2-75 (344)
405 PRK10537 voltage-gated potassi 95.2 0.066 1.4E-06 48.5 7.1 83 79-163 240-333 (393)
406 TIGR01772 MDH_euk_gproteo mala 95.2 0.086 1.9E-06 46.2 7.6 88 81-168 1-118 (312)
407 PF03949 Malic_M: Malic enzyme 95.2 0.11 2.3E-06 44.3 7.9 121 38-182 4-157 (255)
408 TIGR03649 ergot_EASG ergot alk 95.2 0.055 1.2E-06 46.0 6.3 61 81-141 1-78 (285)
409 PTZ00325 malate dehydrogenase; 95.2 0.073 1.6E-06 46.8 7.1 64 76-139 5-85 (321)
410 PRK13376 pyrB bifunctional asp 95.2 0.16 3.5E-06 47.6 9.6 93 74-166 169-293 (525)
411 PLN02662 cinnamyl-alcohol dehy 95.1 0.079 1.7E-06 45.6 7.1 61 79-139 4-85 (322)
412 PLN02214 cinnamoyl-CoA reducta 95.0 0.083 1.8E-06 46.5 7.0 64 76-139 7-90 (342)
413 PF05368 NmrA: NmrA-like famil 95.0 0.023 5E-07 46.9 3.2 60 82-141 1-75 (233)
414 PRK15181 Vi polysaccharide bio 95.0 0.068 1.5E-06 47.1 6.4 36 77-112 13-49 (348)
415 COG0078 ArgF Ornithine carbamo 95.0 0.27 5.8E-06 42.8 9.7 90 77-166 151-270 (310)
416 cd01338 MDH_choloroplast_like 94.9 0.091 2E-06 46.3 7.0 94 80-175 3-135 (322)
417 TIGR02822 adh_fam_2 zinc-bindi 94.9 0.072 1.6E-06 46.6 6.4 85 78-167 165-255 (329)
418 PLN03209 translocon at the inn 94.8 0.047 1E-06 51.6 5.2 64 77-140 78-169 (576)
419 PRK08040 putative semialdehyde 94.8 0.1 2.3E-06 46.2 7.2 83 78-166 3-97 (336)
420 TIGR01771 L-LDH-NAD L-lactate 94.8 0.086 1.9E-06 45.9 6.5 83 84-166 1-113 (299)
421 PRK06398 aldose dehydrogenase; 94.8 0.17 3.6E-06 42.5 8.1 38 76-113 3-41 (258)
422 TIGR01759 MalateDH-SF1 malate 94.8 0.12 2.6E-06 45.6 7.4 60 80-139 4-88 (323)
423 PLN02695 GDP-D-mannose-3',5'-e 94.7 0.086 1.9E-06 47.0 6.5 61 78-138 20-93 (370)
424 PRK12861 malic enzyme; Reviewe 94.7 0.25 5.4E-06 48.3 10.0 93 73-170 183-292 (764)
425 TIGR03466 HpnA hopanoid-associ 94.7 0.077 1.7E-06 45.6 6.0 60 80-139 1-73 (328)
426 PLN02819 lysine-ketoglutarate 94.7 0.035 7.6E-07 55.9 4.2 90 77-166 201-338 (1042)
427 PRK08265 short chain dehydroge 94.7 0.16 3.5E-06 42.6 7.8 38 76-113 3-41 (261)
428 PLN02657 3,8-divinyl protochlo 94.7 0.077 1.7E-06 47.8 6.1 39 74-112 55-94 (390)
429 PRK05884 short chain dehydroge 94.7 0.08 1.7E-06 43.5 5.8 33 81-113 2-35 (223)
430 KOG4230 C1-tetrahydrofolate sy 94.7 0.094 2E-06 49.3 6.6 81 76-172 159-240 (935)
431 PRK07523 gluconate 5-dehydroge 94.7 0.078 1.7E-06 44.2 5.8 38 76-113 7-45 (255)
432 PRK06728 aspartate-semialdehyd 94.7 0.16 3.5E-06 45.2 7.9 81 79-166 5-99 (347)
433 PRK06523 short chain dehydroge 94.7 0.26 5.7E-06 41.0 9.0 39 75-113 5-44 (260)
434 PLN00112 malate dehydrogenase 94.6 0.28 6.1E-06 45.1 9.6 96 80-177 101-235 (444)
435 PRK01438 murD UDP-N-acetylmura 94.6 0.06 1.3E-06 49.6 5.3 109 75-183 12-147 (480)
436 cd05283 CAD1 Cinnamyl alcohol 94.6 0.11 2.4E-06 45.3 6.6 85 78-167 169-264 (337)
437 cd01484 E1-2_like Ubiquitin ac 94.6 0.17 3.7E-06 42.6 7.5 31 81-111 1-32 (234)
438 cd01489 Uba2_SUMO Ubiquitin ac 94.5 0.21 4.5E-06 43.8 8.3 83 81-167 1-123 (312)
439 cd08239 THR_DH_like L-threonin 94.5 0.084 1.8E-06 46.0 5.8 85 78-167 163-263 (339)
440 PRK07231 fabG 3-ketoacyl-(acyl 94.5 0.088 1.9E-06 43.4 5.7 38 76-113 2-40 (251)
441 PLN02989 cinnamyl-alcohol dehy 94.5 0.15 3.1E-06 44.2 7.3 62 78-139 4-86 (325)
442 cd00704 MDH Malate dehydrogena 94.5 0.14 3.1E-06 45.1 7.1 94 80-175 1-133 (323)
443 PRK08628 short chain dehydroge 94.5 0.13 2.9E-06 42.8 6.7 38 76-113 4-42 (258)
444 cd01336 MDH_cytoplasmic_cytoso 94.5 0.13 2.9E-06 45.2 7.0 87 80-166 3-128 (325)
445 PRK07370 enoyl-(acyl carrier p 94.5 0.13 2.8E-06 43.3 6.6 36 76-111 3-41 (258)
446 PLN02427 UDP-apiose/xylose syn 94.5 0.097 2.1E-06 46.7 6.2 65 74-138 9-94 (386)
447 PRK08664 aspartate-semialdehyd 94.4 0.18 3.8E-06 44.9 7.7 81 80-166 4-107 (349)
448 TIGR01142 purT phosphoribosylg 94.4 0.093 2E-06 46.7 5.9 57 81-137 1-69 (380)
449 PLN00141 Tic62-NAD(P)-related 94.4 0.087 1.9E-06 44.1 5.4 66 75-140 13-95 (251)
450 TIGR01296 asd_B aspartate-semi 94.4 0.11 2.4E-06 46.0 6.3 81 81-166 1-92 (339)
451 PLN02272 glyceraldehyde-3-phos 94.3 0.059 1.3E-06 49.0 4.5 30 80-109 86-116 (421)
452 PRK07533 enoyl-(acyl carrier p 94.3 0.24 5.3E-06 41.5 8.0 38 75-112 6-46 (258)
453 PRK12937 short chain dehydroge 94.3 0.2 4.4E-06 41.1 7.4 35 77-111 3-38 (245)
454 PRK04523 N-acetylornithine car 94.3 0.49 1.1E-05 41.9 10.1 89 77-166 166-294 (335)
455 cd01488 Uba3_RUB Ubiquitin act 94.3 0.22 4.9E-06 43.2 7.7 88 81-169 1-131 (291)
456 PLN02178 cinnamyl-alcohol dehy 94.2 0.22 4.7E-06 44.6 7.9 84 78-166 178-273 (375)
457 PRK08862 short chain dehydroge 94.2 0.092 2E-06 43.5 5.1 38 76-113 2-40 (227)
458 PRK05442 malate dehydrogenase; 94.2 0.17 3.7E-06 44.7 7.0 94 80-175 5-137 (326)
459 TIGR01777 yfcH conserved hypot 94.1 0.14 3E-06 43.2 6.2 58 82-139 1-66 (292)
460 PRK14852 hypothetical protein; 94.1 0.15 3.2E-06 51.0 7.1 36 75-110 328-364 (989)
461 PRK06197 short chain dehydroge 94.1 0.061 1.3E-06 46.3 4.0 39 75-113 12-51 (306)
462 PLN02896 cinnamyl-alcohol dehy 94.1 0.11 2.4E-06 45.7 5.6 65 74-138 5-87 (353)
463 PRK05865 hypothetical protein; 94.1 0.32 6.9E-06 48.3 9.3 90 80-169 1-105 (854)
464 TIGR01214 rmlD dTDP-4-dehydror 94.1 0.11 2.5E-06 43.9 5.6 56 81-139 1-59 (287)
465 TIGR02622 CDP_4_6_dhtase CDP-g 94.1 0.14 3.1E-06 45.0 6.3 37 77-113 2-39 (349)
466 PRK07424 bifunctional sterol d 94.0 0.089 1.9E-06 47.8 5.1 63 76-138 175-253 (406)
467 KOG0399 Glutamate synthase [Am 94.0 0.22 4.9E-06 50.4 8.0 67 75-141 1781-1881(2142)
468 PRK03806 murD UDP-N-acetylmura 94.0 0.11 2.4E-06 47.3 5.7 107 76-183 3-130 (438)
469 cd01485 E1-1_like Ubiquitin ac 94.0 0.081 1.7E-06 43.2 4.3 37 75-111 15-52 (198)
470 PLN02514 cinnamyl-alcohol dehy 94.0 0.2 4.4E-06 44.2 7.2 85 78-167 180-276 (357)
471 PRK08264 short chain dehydroge 94.0 0.12 2.6E-06 42.4 5.4 39 76-114 3-43 (238)
472 PRK05717 oxidoreductase; Valid 94.0 0.23 5E-06 41.3 7.2 38 75-112 6-44 (255)
473 COG1063 Tdh Threonine dehydrog 94.0 0.098 2.1E-06 46.4 5.1 85 79-168 169-271 (350)
474 PRK12826 3-ketoacyl-(acyl-carr 93.9 0.13 2.9E-06 42.3 5.6 38 76-113 3-41 (251)
475 COG0677 WecC UDP-N-acetyl-D-ma 93.9 0.66 1.4E-05 41.9 10.1 91 73-168 316-421 (436)
476 cd08255 2-desacetyl-2-hydroxye 93.9 0.098 2.1E-06 44.0 4.8 86 78-168 97-192 (277)
477 PRK12367 short chain dehydroge 93.9 0.13 2.7E-06 43.3 5.4 65 75-139 10-88 (245)
478 TIGR03201 dearomat_had 6-hydro 93.9 0.18 3.9E-06 44.3 6.6 37 78-114 166-202 (349)
479 cd08281 liver_ADH_like1 Zinc-d 93.9 0.2 4.3E-06 44.4 6.9 85 78-167 191-291 (371)
480 PLN03129 NADP-dependent malic 93.9 2.5 5.5E-05 40.1 14.3 108 38-169 300-439 (581)
481 PRK15076 alpha-galactosidase; 93.9 0.053 1.2E-06 49.6 3.3 108 80-188 2-168 (431)
482 TIGR02825 B4_12hDH leukotriene 93.9 0.15 3.2E-06 44.2 5.9 84 78-167 138-238 (325)
483 PRK06079 enoyl-(acyl carrier p 93.8 0.14 3.1E-06 42.8 5.6 35 77-111 5-42 (252)
484 PRK09186 flagellin modificatio 93.8 0.13 2.9E-06 42.6 5.5 37 77-113 2-39 (256)
485 cd01491 Ube1_repeat1 Ubiquitin 93.8 0.84 1.8E-05 39.6 10.4 38 75-112 15-53 (286)
486 cd01490 Ube1_repeat2 Ubiquitin 93.8 0.33 7.1E-06 44.5 8.3 32 81-112 1-38 (435)
487 PRK07478 short chain dehydroge 93.8 0.11 2.5E-06 43.1 5.0 38 76-113 3-41 (254)
488 PF00044 Gp_dh_N: Glyceraldehy 93.8 0.081 1.8E-06 41.5 3.7 29 81-109 2-31 (151)
489 PLN02986 cinnamyl-alcohol dehy 93.7 0.26 5.7E-06 42.6 7.3 62 78-139 4-86 (322)
490 cd08234 threonine_DH_like L-th 93.7 0.13 2.8E-06 44.5 5.3 87 78-169 159-260 (334)
491 PF00289 CPSase_L_chain: Carba 93.7 0.21 4.5E-06 37.0 5.6 97 80-186 3-101 (110)
492 COG0039 Mdh Malate/lactate deh 93.7 0.21 4.6E-06 43.8 6.5 63 80-142 1-83 (313)
493 TIGR03451 mycoS_dep_FDH mycoth 93.7 0.24 5.2E-06 43.6 7.1 85 78-167 176-277 (358)
494 cd08245 CAD Cinnamyl alcohol d 93.7 0.33 7.3E-06 41.8 7.9 85 78-167 162-257 (330)
495 PRK06196 oxidoreductase; Provi 93.7 0.15 3.3E-06 44.1 5.7 38 76-113 23-61 (315)
496 PRK08589 short chain dehydroge 93.7 0.19 4.1E-06 42.5 6.2 36 76-111 3-39 (272)
497 PRK07825 short chain dehydroge 93.7 0.22 4.9E-06 41.8 6.6 38 76-113 2-40 (273)
498 PRK06153 hypothetical protein; 93.6 0.083 1.8E-06 47.5 4.0 37 75-111 172-209 (393)
499 TIGR01758 MDH_euk_cyt malate d 93.6 0.18 3.9E-06 44.4 6.1 92 81-174 1-131 (324)
500 PRK07890 short chain dehydroge 93.6 0.19 4.2E-06 41.6 6.1 37 77-113 3-40 (258)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-66 Score=454.21 Aligned_cols=218 Identities=28% Similarity=0.411 Sum_probs=204.0
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL 77 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l 77 (223)
.+|+||||++.++|+||||.+++.++|| +|++|+.+||||+++++|+++|+++.+++.+++|.|.+. . ..+.+|
T Consensus 63 ~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-~-~~g~el 140 (324)
T COG0111 63 AAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK-A-FRGTEL 140 (324)
T ss_pred hCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc-c-cccccc
Confidence 4799999999999999999999999998 799999999999999999999999999999999999962 2 246799
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
+||||||||+|+||+.+|+++++|||+|++||+..... . +.....++++++++||+|++|+|+|++|++|||++.|
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~ 220 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEEL 220 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHH
Confidence 99999999999999999999999999999999954432 2 3445678999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~ 221 (223)
++||+|++|||+|||++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||.|.|
T Consensus 221 a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~e 289 (324)
T COG0111 221 AKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDE 289 (324)
T ss_pred hhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHH
Confidence 999999999999999999999999999999999999999999999886 99999999999999999986
No 2
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-64 Score=440.25 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=200.6
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC----C
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP----L 73 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~----~ 73 (223)
.+|+||||+++++|+||||+++++++|| +||+|+.+||||++++||++.|++..+++.+++|.|.....+. .
T Consensus 60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~ 139 (311)
T PRK08410 60 QLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRP 139 (311)
T ss_pred hCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCcc
Confidence 3799999999999999999999999998 6999999999999999999999999999999999997542211 2
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
+.+|.||||||||+|+||+.+|+++++|||+|++|||+.........+.++++++++||+|++|+|+|++|+++||++.|
T Consensus 140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~ 219 (311)
T PRK08410 140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL 219 (311)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence 46899999999999999999999999999999999997543322234568999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCC---CceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRL---DNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~---~nv~~TPH~a~~t~~ 221 (223)
++||+|++|||+|||++||++||++||++|+|+ |+||||++||++++ |||++ |||++|||+|++|.+
T Consensus 220 ~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 220 KLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290 (311)
T ss_pred HhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence 999999999999999999999999999999999 99999999998764 89987 899999999999865
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4.4e-64 Score=438.73 Aligned_cols=220 Identities=28% Similarity=0.437 Sum_probs=201.5
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGFK 76 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~ 76 (223)
.+|+||||+++++|+||||.++++++|| +||+|+++||||++++||++.|++..+++.+++|.|.... ....+.+
T Consensus 63 ~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~ 142 (323)
T PRK15409 63 KMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTD 142 (323)
T ss_pred hCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCC
Confidence 4799999999999999999999999998 6999999999999999999999999999999999997431 1124678
Q ss_pred cCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
|.|||+||||+|+||+.+|++++ +|||+|++|+|...... ....+.++++++++||+|++|+|+|++|+++|+++.
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHH
Confidence 99999999999999999999998 99999999998754321 112356999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCCCCCCCC
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~a~~t~~ 221 (223)
|++||+|++|||+|||++||++||++||++|+|.||+||||++||++. +|||++|||++|||+||.|.+
T Consensus 223 l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e 292 (323)
T PRK15409 223 FAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHE 292 (323)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHH
Confidence 999999999999999999999999999999999999999999999875 489999999999999999975
No 4
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=7.1e-64 Score=436.12 Aligned_cols=219 Identities=36% Similarity=0.604 Sum_probs=201.8
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC--CCCCccc
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG--DYPLGFK 76 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~--~~~~~~~ 76 (223)
+|+||+|+..++||||||+++++++|| +|++++++||||++++||++.|++.++++.+++|.|...+ ....+++
T Consensus 64 ~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~ 143 (324)
T COG1052 64 LPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFD 143 (324)
T ss_pred CCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccC
Confidence 599999999999999999999999999 6999999999999999999999999999999999998753 2346789
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
++|||+||||+|+||+++|+++++|||+|+||+|++.+. .....+.+++|++++||+|++|||+|++|+|+||++.|
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l 223 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEEL 223 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHH
Confidence 999999999999999999999999999999999998521 12133455999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC-CCCCCCCCc---eEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV-PKEPLRLDN---IVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~n---v~~TPH~a~~t~~ 221 (223)
++||+|++|||+|||++||++||++||++|+|.||++|||+.||.. ++||+.++| |++|||+|++|.|
T Consensus 224 ~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e 295 (324)
T COG1052 224 AKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE 295 (324)
T ss_pred HhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence 9999999999999999999999999999999999999999999985 568887777 9999999999965
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-63 Score=434.31 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=199.5
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC----CCc
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY----PLG 74 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~----~~~ 74 (223)
+|+||||+++++|+||||.+++.++|| +||+++.+||||++++||++.|++..+++.+++|.|.....+ ..+
T Consensus 64 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~ 143 (317)
T PRK06487 64 APQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPI 143 (317)
T ss_pred CCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcc
Confidence 799999999999999999999999998 699999999999999999999999999999999999754221 124
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~ 154 (223)
.+|.||||||||+|+||+.+|+++++|||+|++|+++.... .....++++++++||+|++|+|+|++|+++||++.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~--~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~ 221 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA--RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc--cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence 68999999999999999999999999999999999864322 1234689999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCC--CCceEEccCCCCCCCC
Q 035615 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLR--LDNIVLLPCQNALTHW 221 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~--~~nv~~TPH~a~~t~~ 221 (223)
+||+|++|||+|||++||++||++||++|+|+||+||||++||++++ |||. +|||++|||+||+|.+
T Consensus 222 ~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e 291 (317)
T PRK06487 222 LMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291 (317)
T ss_pred cCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999998864 8995 8999999999999865
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=5e-63 Score=430.90 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=199.3
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC----CC
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY----PL 73 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~----~~ 73 (223)
-+|+||||++.++|+||||.++++++|| +||+++.+||||+++++|++.|++..+++.++++.|.....+ ..
T Consensus 62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~ 141 (314)
T PRK06932 62 QLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYP 141 (314)
T ss_pred hCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCc
Confidence 3799999999999999999999999998 699999999999999999999999999999999999743221 13
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
+.+|.||||||||+|+||+.+|+++++|||+|++|++....... ..+.++++++++||+|++|+|+|++|+++||++.|
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l 220 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETL 220 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHH
Confidence 46899999999999999999999999999999999986432211 22568999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCC----CCCceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPL----RLDNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~----~~~nv~~TPH~a~~t~~ 221 (223)
++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +||| ++|||++|||+|++|.+
T Consensus 221 ~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e 293 (314)
T PRK06932 221 ALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDS 293 (314)
T ss_pred HhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHH
Confidence 99999999999999999999999999999999999999999999875 4898 59999999999999965
No 7
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-61 Score=429.83 Aligned_cols=219 Identities=25% Similarity=0.319 Sum_probs=202.0
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
+|+||||++.++|+||||++++.++|| ++|+|+.+||||++++||++.|++..+++.+++|.|........+++|.
T Consensus 119 ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~ 198 (386)
T PLN03139 119 AKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLE 198 (386)
T ss_pred CCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCC
Confidence 799999999999999999999999999 6999999999999999999999999999999999997532223467899
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
||||||||+|+||+.+|++|++|||+|++||++..+.. ++....++++++++||+|++|+|++++|+++|+++.|
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 278 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERI 278 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHH
Confidence 99999999999999999999999999999998754321 2334468999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~ 221 (223)
++||+|++|||++||++||++||+++|++|+|.||++|||++||++.+ |||.+|||++|||+||.|.+
T Consensus 279 ~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~ 347 (386)
T PLN03139 279 AKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTID 347 (386)
T ss_pred hhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHH
Confidence 999999999999999999999999999999999999999999998764 99999999999999999865
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.8e-61 Score=424.36 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=202.0
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-----CCC
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-----DYP 72 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-----~~~ 72 (223)
.+|+||||+++++|+||||.++++++|| +||+|+.+||||++++||++.|++..+++.+++|.|.... ...
T Consensus 64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~ 143 (333)
T PRK13243 64 AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF 143 (333)
T ss_pred hCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence 3799999999999999999999999998 6999999999999999999999999999999999997421 112
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
.+.+|+||||||||+|+||+.+|+++++|||+|++|||++.... ......++++++++||+|++|+|+|++|+++|+
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC
Confidence 46789999999999999999999999999999999999765421 112346899999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+
T Consensus 224 ~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e 295 (333)
T PRK13243 224 EERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFE 295 (333)
T ss_pred HHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHH
Confidence 999999999999999999999999999999999999999999999999987799999999999999999865
No 9
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-61 Score=429.90 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=202.6
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL 77 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l 77 (223)
-+|+||||+++++|+||||++++.++|| ++++|+.+||||++++||++.|++..+++.+++|.|........+++|
T Consensus 111 ~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L 190 (385)
T PRK07574 111 KAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDL 190 (385)
T ss_pred hCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceec
Confidence 3799999999999999999999999998 589999999999999999999999999999999999854222246789
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
.|+||||||+|+||+.+|++|++|||+|++|||+.... .+...+.+++|++++||+|++|+|+|++|+++|+++.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~ 270 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADV 270 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence 99999999999999999999999999999999986321 1333457899999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCC
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~ 221 (223)
|++||+|++|||+|||+++|++||++||++|+|+||++|||++||++++ |||++|||++|||+||.|.+
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e 340 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLS 340 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHH
Confidence 9999999999999999999999999999999999999999999998764 99999999999999999865
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-61 Score=433.56 Aligned_cols=218 Identities=24% Similarity=0.366 Sum_probs=202.0
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL 77 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l 77 (223)
.+|+||||++.++|+||||+++++++|| +||+|+.+||||++++||++.|++..+++.+++|.|.+.. ..+.+|
T Consensus 72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L 149 (409)
T PRK11790 72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEV 149 (409)
T ss_pred hCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc--cCcccC
Confidence 3799999999999999999999999999 6999999999999999999999999999999999998532 246789
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m 156 (223)
.|||+||||+|+||+.+|+++++|||+|++||++..... ......+++|++++||+|++|+|+|++|+++||++.|++|
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~m 229 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALM 229 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcC
Confidence 999999999999999999999999999999998754332 2334568999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-----CCCCCCCceEEccCCCCCCCC
Q 035615 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-----KEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-----~~l~~~~nv~~TPH~a~~t~~ 221 (223)
|+|++|||+|||++||++||+++|++|+|.||+||||++||++. +|||++|||++|||+||+|.+
T Consensus 230 k~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 230 KPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred CCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 99999999999999999999999999999999999999999874 489999999999999999865
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=9.6e-61 Score=425.49 Aligned_cols=219 Identities=25% Similarity=0.385 Sum_probs=198.5
Q ss_pred Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCC-CCCCcc
Q 035615 3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTG-DYPLGF 75 (223)
Q Consensus 3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~ 75 (223)
+|+ ||+|+++++|+||||+++++++|| +||+++.+||||++++||++.|++..+++.+++|.|.... ....+.
T Consensus 82 ~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~ 161 (386)
T PLN02306 82 LSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGN 161 (386)
T ss_pred CCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCc
Confidence 564 699999999999999999999998 6999999999999999999999999999999999985321 112467
Q ss_pred ccCCCEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC-------C------------cccccChhhhhcCCcEEE
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV-------L------------FPYCANVYDLAVNSDVLV 135 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~el~~~aDiv~ 135 (223)
+|.|+||||||+|+||+.+|++++ +|||+|++||++..... + .....+++|++++||+|+
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~ 241 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVIS 241 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEE
Confidence 899999999999999999999985 99999999998764211 0 112358999999999999
Q ss_pred EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCC
Q 035615 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQ 215 (223)
Q Consensus 136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~ 215 (223)
+|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+
T Consensus 242 lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHi 321 (386)
T PLN02306 242 LHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHI 321 (386)
T ss_pred EeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999877799999999999999
Q ss_pred CCCCCC
Q 035615 216 NALTHW 221 (223)
Q Consensus 216 a~~t~~ 221 (223)
|++|.+
T Consensus 322 ag~T~e 327 (386)
T PLN02306 322 ASASKW 327 (386)
T ss_pred ccCcHH
Confidence 999864
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.7e-60 Score=419.99 Aligned_cols=215 Identities=26% Similarity=0.426 Sum_probs=197.5
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCC---CcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcc
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQA---DLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGF 75 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~---~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~ 75 (223)
+|+||||++.++|+||+|++++.++|| +|++ |+.+||||+++++|++.|++..+++.++++.|.. ..+.
T Consensus 80 ~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~ 155 (347)
T PLN02928 80 ASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGD 155 (347)
T ss_pred CCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----cccc
Confidence 799999999999999999999999998 4654 7899999999999999999999999999999964 2457
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------------cccccChhhhhcCCcEEEEecc
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------------FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDiv~~~~p 139 (223)
+|.|||+||||+|+||+.+|+++++|||+|++|+|+...... .....++++++++||+|++|+|
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP 235 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence 899999999999999999999999999999999987432110 1135689999999999999999
Q ss_pred CChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCC
Q 035615 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNAL 218 (223)
Q Consensus 140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~ 218 (223)
+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++ |||++|||++|||+|++
T Consensus 236 lt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~ 315 (347)
T PLN02928 236 LTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGV 315 (347)
T ss_pred CChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998764 99999999999999999
Q ss_pred CCC
Q 035615 219 THW 221 (223)
Q Consensus 219 t~~ 221 (223)
|.+
T Consensus 316 t~~ 318 (347)
T PLN02928 316 TEY 318 (347)
T ss_pred hHH
Confidence 875
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=3.9e-59 Score=431.06 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=201.0
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
+|+||||+++++|+||||++++.++|| +||+|+.+||||++++||+++|+++.+++.+++|.|.... ..+.+|.
T Consensus 60 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~ 137 (525)
T TIGR01327 60 APKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA--FMGTELY 137 (525)
T ss_pred CCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc--cCccccC
Confidence 799999999999999999999999998 6999999999999999999999999999999999997532 2467899
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~ 154 (223)
||||||||+|+||+.+|+++++|||+|++|||+.... .+.....+++|++++||+|++|+|+|++|+++|+++.|+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~ 217 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA 217 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHh
Confidence 9999999999999999999999999999999864322 123334589999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
+||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|+.|.+
T Consensus 218 ~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e 284 (525)
T TIGR01327 218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTRE 284 (525)
T ss_pred cCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHH
Confidence 9999999999999999999999999999999999999999999877799999999999999999865
No 14
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.9e-58 Score=401.52 Aligned_cols=216 Identities=21% Similarity=0.322 Sum_probs=193.2
Q ss_pred CccceEEEEccccchhHhHHH-----HHhcCC----C-CCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC
Q 035615 3 CYQTNLYACILSEYQNWLKQL-----IKQKSI----A-KQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP 72 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~-----~~~~~i----~-~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~ 72 (223)
+|+||||++.++|+|++|... +.+++| + .+.++.+||||+++++|++.|++..+.+.++++.|...
T Consensus 54 ~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---- 129 (312)
T PRK15469 54 GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---- 129 (312)
T ss_pred cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC----
Confidence 589999999999999998432 334676 2 34689999999999999999999999999999999743
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
...+++|+||||||+|+||+.+|++|++|||+|++|+++.+...+. ....++++++++||+|++|+|+|++|+++|+
T Consensus 130 ~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 130 PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhH
Confidence 3457999999999999999999999999999999999876543322 2246899999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCCCCceEEccCCCCCCCCC
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK-EPLRLDNIVLLPCQNALTHWE 222 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~-~l~~~~nv~~TPH~a~~t~~~ 222 (223)
++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++ |||++|||++|||+|+.|.++
T Consensus 210 ~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~ 283 (312)
T PRK15469 210 QQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA 283 (312)
T ss_pred HHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence 9999999999999999999999999999999999999999999999998764 999999999999999999753
No 15
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-58 Score=397.94 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=193.9
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC---CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI---AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i---~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
.+|+||||++.++|+||+|.++++++++ ++|+++.+||||+++++|++.|++..+++.+++|.|... .+.+|.
T Consensus 46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~ 121 (303)
T PRK06436 46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS----PTKLLY 121 (303)
T ss_pred CCCCeEEEEECCcccCcccHHHHHhCCeEEEcCCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC----CCCCCC
Confidence 4689999999999999999999998887 578999999999999999999999999999999999853 357899
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk 157 (223)
||||||||+|+||+.+|+++++|||+|++|||+.... +.. .+.++++++++||+|++|+|+|++|+++|+++.|++||
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk 200 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFR 200 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCC
Confidence 9999999999999999999999999999999975432 222 25689999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCC-CCC
Q 035615 158 KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNA-LTH 220 (223)
Q Consensus 158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~-~t~ 220 (223)
+|++|||+|||+++|+++|+++|++|++.+|++|||++||++++. .+|||++|||++| .|.
T Consensus 201 ~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~ 262 (303)
T PRK06436 201 KGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSG 262 (303)
T ss_pred CCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCH
Confidence 999999999999999999999999999999999999999986654 6899999999876 443
No 16
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-58 Score=425.80 Aligned_cols=217 Identities=27% Similarity=0.408 Sum_probs=201.1
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL 77 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l 77 (223)
.+|+||||+++++|+||||+++++++|| +|++|+.+||||++++||+++|+++.+++.+++|.|.... ..+.+|
T Consensus 61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l 138 (526)
T PRK13581 61 AAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK--FMGVEL 138 (526)
T ss_pred hCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC--cccccc
Confidence 3799999999999999999999999998 6999999999999999999999999999999999997532 246789
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.||||||||+|+||+.+|+++++|||+|++|||+.... .++. ..+++|++++||+|++|+|+|++|+++|+++.|
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l 217 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE-LVSLDELLARADFITLHTPLTPETRGLIGAEEL 217 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE-EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHH
Confidence 99999999999999999999999999999999865322 1232 348999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|+.|.+
T Consensus 218 ~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e 285 (526)
T PRK13581 218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE 285 (526)
T ss_pred hcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHH
Confidence 99999999999999999999999999999999999999999999887799999999999999999865
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-58 Score=393.86 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=202.6
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
.-+||+|++.++|+||+|++++.++|| +|.+|+.++||+++++++++.|++.+....+++|+|.+.. ..+.+|.
T Consensus 68 ~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~ 145 (406)
T KOG0068|consen 68 AGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK--YLGWELR 145 (406)
T ss_pred cCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc--eeeeEEe
Confidence 457999999999999999999999998 7999999999999999999999999999999999998653 2689999
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~ 155 (223)
|||+||+|+|+||+.+|++++.+||+|++||+-..... ......+++|+++.||||++|+|+||+|++++|++.|++
T Consensus 146 GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~ 225 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAK 225 (406)
T ss_pred ccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHH
Confidence 99999999999999999999999999999987654332 123568999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC---CCCCCCCceEEccCCCCCCCCC
Q 035615 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP---KEPLRLDNIVLLPCQNALTHWE 222 (223)
Q Consensus 156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~---~~l~~~~nv~~TPH~a~~t~~~ 222 (223)
||+|..+||++||++||++||++||++|+++||++|||+.||+.. ..|.+||||++|||+|++|.|.
T Consensus 226 mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EA 295 (406)
T KOG0068|consen 226 MKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEA 295 (406)
T ss_pred hhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHH
Confidence 999999999999999999999999999999999999999999874 4899999999999999999873
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.5e-57 Score=393.38 Aligned_cols=220 Identities=39% Similarity=0.649 Sum_probs=205.6
Q ss_pred CCccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCcccc
Q 035615 2 LCYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKL 77 (223)
Q Consensus 2 ~~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l 77 (223)
+.|+||+|.++++|+||||+++++++|| +|+.++.+|||++++++|.+.|++..+++.+++|.|.....+..+..+
T Consensus 81 ~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~ 160 (336)
T KOG0069|consen 81 LSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDL 160 (336)
T ss_pred cCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccc
Confidence 5799999999999999999999999999 699999999999999999999999999999999999666666788999
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc----ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF----PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~----~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.||||||+|+|+||+.+|++|++||+.+.|++|++.+.+.. ....++++++.+||+|++|||+|++|+++||++.|
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~ 240 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFI 240 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence 99999999999999999999999998899999987654321 23569999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
.+||+|++|||++||.++|++++++||++|+|.+|++|||++||.+++||+.++|+++|||+|+.|.+
T Consensus 241 ~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~ 308 (336)
T KOG0069|consen 241 EKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLE 308 (336)
T ss_pred HhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHH
Confidence 99999999999999999999999999999999999999999999667799999999999999999854
No 19
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2e-57 Score=397.93 Aligned_cols=217 Identities=18% Similarity=0.341 Sum_probs=197.0
Q ss_pred ccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCC
Q 035615 4 YQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGG 79 (223)
Q Consensus 4 p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g 79 (223)
|+||+|++.++|+||||+++++++|| +|++++++||||+++++|++.|++..+++.+++|.|.+... ..+.+|+|
T Consensus 68 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~-~~~~~l~g 146 (330)
T PRK12480 68 YGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE-IMSKPVKN 146 (330)
T ss_pred cCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc-cCccccCC
Confidence 38999999999999999999999998 69999999999999999999999999999999997653221 24678999
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ 158 (223)
++|||||+|.||+.+|++|++||++|++||+++...... ....++++++++||+|++|+|.+++|+++++++.|+.||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~ 226 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK 226 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC
Confidence 999999999999999999999999999999987543322 2345899999999999999999999999999999999999
Q ss_pred CcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----------C----CCCCCCCceEEccCCCCCCCC
Q 035615 159 GGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----------P----KEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 159 ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----------~----~~l~~~~nv~~TPH~a~~t~~ 221 (223)
|++|||+|||.+||++||+++|++|+|+||+||||++||+. + .|||++|||++|||+|++|.+
T Consensus 227 gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~ 303 (330)
T PRK12480 227 GAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDE 303 (330)
T ss_pred CcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHH
Confidence 99999999999999999999999999999999999999962 1 269999999999999999975
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=7.5e-56 Score=392.05 Aligned_cols=198 Identities=24% Similarity=0.326 Sum_probs=181.5
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
+|+||||+++++|+||||.++++++|| +||+|+.+||||+++++|++.|+. +.+|.
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~ 115 (378)
T PRK15438 56 GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLH 115 (378)
T ss_pred CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcC
Confidence 689999999999999999999999999 699999999999999999999861 24689
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChh----hhhccCHHHHh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQ----THHIINKDVMA 154 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~----t~~li~~~~l~ 154 (223)
|+||||||+|+||+.+|+++++|||+|++||+..........+.++++++++||+|++|+|+|++ |+++++++.|+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~ 195 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIR 195 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHh
Confidence 99999999999999999999999999999997644322222457899999999999999999996 99999999999
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
+||+|++|||+|||++||++||+++|++|++.+|+||||++||.++.+||..++ ++|||+||+|.+
T Consensus 196 ~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e 261 (378)
T PRK15438 196 SLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLE 261 (378)
T ss_pred cCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHH
Confidence 999999999999999999999999999999999999999999987778988766 999999999865
No 21
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3e-55 Score=384.94 Aligned_cols=218 Identities=18% Similarity=0.282 Sum_probs=196.5
Q ss_pred Ccc--ceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccc
Q 035615 3 CYQ--TNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFK 76 (223)
Q Consensus 3 ~p~--Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~ 76 (223)
+|+ ||||++.++|+||||+++++++|| +||+++.+||||+++++|++.|++..+++.+++|.|.+... ..+++
T Consensus 65 ~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~-~~~~~ 143 (332)
T PRK08605 65 LNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP-ILSRS 143 (332)
T ss_pred hhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc-cccce
Confidence 676 999999999999999999999998 69999999999999999999999999999999998853321 24678
Q ss_pred cCCCEEEEEecChHHHHHHHHH-HhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRL-QAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
|+|++|||||+|+||+.+|++| ++||++|++||++..... ......++++++++||+|++|+|.+++|+++++++.+
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l 223 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLF 223 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHH
Confidence 9999999999999999999999 789999999998765321 2223458999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CCC------------CCCCCCceEEccCCCCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VPK------------EPLRLDNIVLLPCQNALT 219 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~~------------~l~~~~nv~~TPH~a~~t 219 (223)
+.||+|++|||++||.++|+++|+++|++|+|.||+||||+.||+ +.+ +||++|||++|||+|++|
T Consensus 224 ~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t 303 (332)
T PRK08605 224 KHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYT 303 (332)
T ss_pred hcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccH
Confidence 999999999999999999999999999999999999999999983 221 499999999999999998
Q ss_pred CC
Q 035615 220 HW 221 (223)
Q Consensus 220 ~~ 221 (223)
.+
T Consensus 304 ~e 305 (332)
T PRK08605 304 DA 305 (332)
T ss_pred HH
Confidence 65
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.2e-55 Score=387.15 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=182.7
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLG 78 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~ 78 (223)
.|+||||++.++|+||||.++++++|| +||+|+.+||||+++++|++.|+ .+.+|.
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~ 115 (381)
T PRK00257 56 GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLA 115 (381)
T ss_pred CCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcC
Confidence 489999999999999999999999999 69999999999999999999885 135699
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCCh----hhhhccCHHHHh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTE----QTHHIINKDVMA 154 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~----~t~~li~~~~l~ 154 (223)
|+||||||+|+||+.+|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+ .|+++|+++.|+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~ 195 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLA 195 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHh
Confidence 9999999999999999999999999999999865433333346789999999999999999998 599999999999
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCceEEccCCCCCCCC
Q 035615 155 ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNIVLLPCQNALTHW 221 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv~~TPH~a~~t~~ 221 (223)
+||+|++|||+|||++||++||+++|++|++.+|+||||++||.++.+||.. |+++|||+||+|.+
T Consensus 196 ~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e 261 (381)
T PRK00257 196 SLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLD 261 (381)
T ss_pred cCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHH
Confidence 9999999999999999999999999999999999999999999877789986 99999999999965
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.4e-52 Score=336.89 Aligned_cols=173 Identities=33% Similarity=0.541 Sum_probs=152.4
Q ss_pred HHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cc
Q 035615 43 IGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LF 118 (223)
Q Consensus 43 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~ 118 (223)
++++|++.|++..+++.++++.|... ....+++++|+||||||+|+||+.+|+++++|||+|++|||+..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 58999999999999999999999211 12367899999999999999999999999999999999999987533 12
Q ss_pred ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC
Q 035615 119 PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN 198 (223)
Q Consensus 119 ~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~ 198 (223)
..+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||++||+
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 24679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCceEEccCCC
Q 035615 199 VPK-EPLRLDNIVLLPCQN 216 (223)
Q Consensus 199 ~~~-~l~~~~nv~~TPH~a 216 (223)
+.+ |||++|||++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 876 999999999999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.95 E-value=5.3e-28 Score=208.52 Aligned_cols=209 Identities=22% Similarity=0.325 Sum_probs=184.6
Q ss_pred cceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCC-----CCcc
Q 035615 5 QTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDY-----PLGF 75 (223)
Q Consensus 5 ~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~-----~~~~ 75 (223)
-||++...+.|+|++|+.++.+.+| .|+..-+.+|+-++..+|.++|+-....+..++|.|...... .-..
T Consensus 95 alRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~ 174 (435)
T KOG0067|consen 95 ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLA 174 (435)
T ss_pred hhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccc
Confidence 3799999999999999999999998 488889999999999999999999999999999998643211 1234
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
.++|.+.|++|+|+.|++++.++++||+.|+.||+..... .+.....++.+++.++|.+++|+.+++.++++|+.-
T Consensus 175 ~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~ 254 (435)
T KOG0067|consen 175 RIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDF 254 (435)
T ss_pred cccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccc
Confidence 5789999999999999999999999999999999875432 244455679999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC--CCCCCCCCceEEccCCCCCCC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV--PKEPLRLDNIVLLPCQNALTH 220 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~--~~~l~~~~nv~~TPH~a~~t~ 220 (223)
..++|++|+.++|++||.++|+++|.++|+.|++.+++ |.. ..||.+.||.++|||.+++++
T Consensus 255 tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e 318 (435)
T KOG0067|consen 255 TIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE 318 (435)
T ss_pred cceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence 99999999999999999999999999999999999888 222 248999999999999998875
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=4.1e-21 Score=173.70 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=129.3
Q ss_pred ccccchhHhHHH-HHhcCC----CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEe
Q 035615 12 ILSEYQNWLKQL-IKQKSI----AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVR 86 (223)
Q Consensus 12 ~~aG~d~id~~~-~~~~~i----~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG 86 (223)
+++|+..+-..+ ....+| +|++++.+++|+++++++++.. ..++.+ +..+.|++++|+|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~----------~~~LaGKtVgVIG 261 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT----------DVMIAGKTVVVCG 261 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc----------CCCcCCCEEEEEC
Confidence 667776653321 112344 6999999999999999999883 333333 2468999999999
Q ss_pred cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEE
Q 035615 87 LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMI 162 (223)
Q Consensus 87 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l 162 (223)
+|.||+.+|+++++||++|+++++++.... ......+++++++.+|+|++|+ .+.++|+++.|+.||+|++|
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiL 337 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIV 337 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEE
Confidence 999999999999999999999977754431 1122457999999999999985 37889999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC
Q 035615 163 INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK 201 (223)
Q Consensus 163 IN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~ 201 (223)
||+||+ |++.+.++|+++. ++|+++.||....
T Consensus 338 INvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~ 369 (476)
T PTZ00075 338 GNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR 369 (476)
T ss_pred EEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence 999999 7888889988754 7899999996543
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.78 E-value=8.4e-19 Score=151.24 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=118.4
Q ss_pred ceEEEEccccchhHhHH-HHHhcCC----------CCCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCc
Q 035615 6 TNLYACILSEYQNWLKQ-LIKQKSI----------AKQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLG 74 (223)
Q Consensus 6 Lk~i~~~~aG~d~id~~-~~~~~~i----------~~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~ 74 (223)
++.++...+|+++.+++ .++++|| .+.+|+.++||+++++++.. .+
T Consensus 90 ~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~-----------------------~~ 146 (287)
T TIGR02853 90 TKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH-----------------------TD 146 (287)
T ss_pred cCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-----------------------cC
Confidence 34577789999999998 9999998 25789999999999988752 12
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhhhc
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~l 147 (223)
.+++|++++|+|+|.||+.+|+.|+++|++|.+++|+++... +.. ...+++++++++|+|++|+|.+ +
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----i 221 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----V 221 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----H
Confidence 368899999999999999999999999999999999875421 111 2346778899999999999853 6
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 035615 148 INKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDIN 186 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~ 186 (223)
++++.++.||+++++||++..+- +|. ++.++..+.
T Consensus 222 i~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~ 257 (287)
T TIGR02853 222 LTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIK 257 (287)
T ss_pred hCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCE
Confidence 78889999999999999998543 344 344455554
No 27
>PLN02494 adenosylhomocysteinase
Probab=99.71 E-value=3.2e-17 Score=148.24 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=101.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
.+.|++++|+|+|.||+.+|+++++||++|+++++++.... ++. ..+++++++.+|+|+.+ ..+++++++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 47899999999999999999999999999999988775421 232 34788999999999873 357889999
Q ss_pred HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEeeCCCCCC
Q 035615 151 DVMAELGKGGMIINVGR-GALIDEKEMLQF--LVQGDINGVGLDVFENDP 197 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~ar-g~~vd~~al~~a--L~~~~i~~a~lDV~~~EP 197 (223)
+.|+.||+|++|+|+|| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999998864
No 28
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.63 E-value=1.2e-15 Score=136.82 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=99.2
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
.+.|++|+|+|+|.||+.+|++++++|++|+++++++.+.. ++ ...+++++++.+|+|+.+.. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 47899999999999999999999999999999987764421 23 34567889999999987653 6788999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEeeCCCC
Q 035615 151 DVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDINGVGLDVFEN 195 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~~a~lDV~~~ 195 (223)
+.+..||+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999887777899999874
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.61 E-value=1.9e-15 Score=130.84 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=75.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
..|+||||||||+|+||+++|++|+++|++|+++++...... ++ ...+++|++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~-~v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF-EVMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC-EECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 469999999999999999999999999999998876543321 33 245899999999999999996 67899999
Q ss_pred HHHHhcCCCCcEEEE
Q 035615 150 KDVMAELGKGGMIIN 164 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN 164 (223)
++.++.||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999997764
No 30
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.59 E-value=1.5e-15 Score=120.64 Aligned_cols=111 Identities=20% Similarity=0.366 Sum_probs=90.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC-HHHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN-KDVM 153 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~-~~~l 153 (223)
++|||||+|.||+.+|++|...|++|.+|||++++.+ +.....++.|+++++|+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 6899999999999999999999999999999875532 455678999999999999999998888877762 2278
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
+.+++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999988876 7774
No 31
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.59 E-value=6.3e-15 Score=126.23 Aligned_cols=116 Identities=18% Similarity=0.260 Sum_probs=102.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhccC--HH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~ 151 (223)
++||+||+|.||..||++|...|++|.+|||++.+. .+.....+..|+.+.+|+|++++|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 479999999999999999999999999999998772 2556677889999999999999999999998874 57
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCCC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFENDP 197 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~EP 197 (223)
.++.+|+|+++||+++.+......+.+.++++.+. ++| |....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence 88999999999999999999999999999999987 777 444443
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.52 E-value=1.1e-13 Score=119.95 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=106.0
Q ss_pred CccceEEEEccccchhHhHHHHHhcCCC----C------CCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCC
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSIA----K------QADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYP 72 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i~----~------~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~ 72 (223)
+|+.+.+ +.+.+.++++ +.+.++||+ . -.|+.++||.++...+. +
T Consensus 91 l~~~~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~-------------------- 145 (296)
T PRK08306 91 TPEHCTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H-------------------- 145 (296)
T ss_pred cCCCCEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h--------------------
Confidence 5677644 3688889987 788899983 2 24889999998776442 1
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhh
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
.+..+.|++++|+|+|.+|+.+++.|+++|++|.+++|++.... ++. ...++.+.++++|+|+.++|.
T Consensus 146 ~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~----- 220 (296)
T PRK08306 146 TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA----- 220 (296)
T ss_pred CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----
Confidence 12347899999999999999999999999999999999865321 222 234677889999999999883
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+++++.++.|++++++||++.
T Consensus 221 ~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 221 LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred hhhhHHHHHcCCCCcEEEEEcc
Confidence 4678899999999999999985
No 33
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.46 E-value=2.1e-13 Score=117.67 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=91.6
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc-C-HHHH
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII-N-KDVM 153 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li-~-~~~l 153 (223)
+|||||+|.||+.+|+.+...|++|.+|||+++... +.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 489999999999999999999999999999875432 33345678899999999999999887777764 3 3467
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD 191 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD 191 (223)
..++++.++||+++....+.+.+.+.++++.+. ++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 788999999999999999999999999987766 555
No 34
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.46 E-value=2.4e-13 Score=117.50 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=95.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV 152 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~ 152 (223)
++|||||+|.||+.+|+.+...|++|.+|||++.... +.....++++++++||+|++++|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5899999999999999999999999999999875432 233456788999999999999998888777763 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
++.++++.++||+++......+++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778899999999999999888899999988777633333554444
No 35
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.45 E-value=3.7e-13 Score=116.66 Aligned_cols=111 Identities=12% Similarity=0.183 Sum_probs=94.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDV 152 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~ 152 (223)
++|||||+|.||..+|+.|...|++|.+|||++.... +.....+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 4799999999999999999999999999999876432 333456888999999999999998777777663 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
++.++++.++||++++.....+.+.+.+.+..+. ++|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7778999999999999999999999999998887 6774
No 36
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.45 E-value=4.6e-13 Score=116.22 Aligned_cols=109 Identities=20% Similarity=0.305 Sum_probs=93.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcC---CcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~ 151 (223)
++|||||+|+||+.+|++|...|++|.+|||++.... +.....+.++++++ +|+|++++|..+.++.++ .+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 3799999999999999999999999999999865422 33445688888876 699999999887888877 45
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD 191 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD 191 (223)
.+..+++|.++||+++....+...+.+.+++..+. ++|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77788999999999999999999999999988876 677
No 37
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.40 E-value=6.9e-13 Score=104.52 Aligned_cols=99 Identities=16% Similarity=0.327 Sum_probs=72.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
..+.||++.|+|||.+|+.+|+.|+++|++|.+++..|... +++. ..+++++++++|+++.+.. ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence 35889999999999999999999999999999999887543 2333 4689999999999988764 467889
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615 150 KDVMAELGKGGMIINVGRGAL-IDEKEMLQ 178 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~~ 178 (223)
.+.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999997665 56666554
No 38
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=1.7e-12 Score=112.67 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=93.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcC---CcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~ 151 (223)
++|||||+|.||+.+|+.|...|++|.+|||+++... +.....+.+++++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 4799999999999999999999999999999875432 33445678888875 699999999877777776 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
.+..++++.++||++++.......+.+.+++..+. ++|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999999887 6674
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.36 E-value=3.3e-12 Score=115.30 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=83.3
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
.+.|++++|+|+|.||+.+|++++++|++|+++++++.+.. ++ ...+++++++.+|+|+.+. .+.++|+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~v~~l~eal~~aDVVI~aT----G~~~vI~~ 283 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF-RVMTMEEAAELGDIFVTAT----GNKDVITA 283 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-EecCHHHHHhCCCEEEECC----CCHHHHHH
Confidence 47899999999999999999999999999999998875432 22 2457889999999998765 35678999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615 151 DVMAELGKGGMIINVGRGAL-IDEKEMLQ 178 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~ 178 (223)
+.+..||+|++++|+|+... +|.++|.+
T Consensus 284 ~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 284 EHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999999999999999887 78887765
No 40
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.35 E-value=2.9e-12 Score=117.75 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=98.3
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccc---cccChhhhhcC---CcEEEEeccCChhhh
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFP---YCANVYDLAVN---SDVLVVCCALTEQTH 145 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~el~~~---aDiv~~~~p~t~~t~ 145 (223)
+|||||+|.||+.||++|...|++|.+|||++++.+ +.. ...+++|+++. +|+|++++|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999999875432 211 35678888875 999999999999999
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
.++ ...++.+++|.++||+++...-+...+.+.+++..+.....=|+..++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 888 568888999999999999999999999999999999844444665554
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.33 E-value=6.6e-12 Score=108.73 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=92.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH--HHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK--DVM 153 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~--~~l 153 (223)
++|||||+|+||+.+++.|...|++|.+|++++... .+.....+..+++++||+|++++|..+..+.++.. ..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 379999999999999999999999999999876421 13344567888999999999999988777776632 356
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
+.+++|.++|+++....-....+.+.+++..+. ++|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999999999999999988776 7774
No 42
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=104.95 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=97.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN-- 149 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~-- 149 (223)
-+.++||+||+|.||..|+..|...|++|++|||+....+ ++....+..|+.+.||+|+.++|.....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 3578999999999999999999999999999999987654 455578999999999999999999888888763
Q ss_pred HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEee
Q 035615 150 KDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLD 191 (223)
Q Consensus 150 ~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lD 191 (223)
...|+.++++... |+.+.-+..-...|.++++....+ ++|
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 3477777888777 899999988888999999998776 676
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.27 E-value=1.4e-11 Score=107.86 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=73.5
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
..|++++|||||+|+||+++|+.|+.+|++|+++++..... .++. ..+.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 45899999999999999999999999999998776654322 1232 34889999999999999996654 6777
Q ss_pred CHHHHhcCCCCcEEEEcCCC
Q 035615 149 NKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg 168 (223)
+++.+..|++|++| -++.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67788899999988 55555
No 44
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.26 E-value=3.5e-11 Score=104.44 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=88.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhh---hcCCcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDL---AVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
++|||||+|.||..+|+.|...|++|.+|||+++... +.....+++++ +..+|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 4799999999999999999999999999999876432 22223455554 45789999999976 777777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
....+++|.++||++.+...+...+.+.+++..+. ++|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77788999999999999989999999999888776 5664
No 45
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.26 E-value=3.3e-11 Score=110.50 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=96.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------C--cccccChhhhhc---CCcEEEEeccCChhhh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------L--FPYCANVYDLAV---NSDVLVVCCALTEQTH 145 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~el~~---~aDiv~~~~p~t~~t~ 145 (223)
.+|||||+|.||+.+|++|...|++|.+|||+++..+ + ...+.+++|+++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999999999999876521 2 123568888886 5899999999888888
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCC
Q 035615 146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFEND 196 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~E 196 (223)
.++ ++.+..+++|.++||++.+..-|...+.+.+.+..+. ++| |...+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcCCCCCCH
Confidence 888 5678889999999999999999999999999999998 555 45444
No 46
>PLN02858 fructose-bisphosphate aldolase
Probab=99.26 E-value=2.2e-11 Score=123.64 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=98.8
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NK 150 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~ 150 (223)
+.++||+||+|.||..||++|...|++|.+|||++.+.. ++....+..|+.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 467899999999999999999999999999999876543 45567899999999999999999988888876 35
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC--ceEEEeeC
Q 035615 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD--INGVGLDV 192 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~--i~~a~lDV 192 (223)
..++.+++|.++|++|+...-....+.+.+++.. +. ++|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999998877 54 7774
No 47
>PLN02712 arogenate dehydrogenase
Probab=99.23 E-value=2.4e-11 Score=115.70 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=85.1
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhc-CCcEEEEeccCChhhhhc
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAV-NSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~l 147 (223)
.+.++.+++|||||+|.||+.+|+.++.+|++|++|+++.... .+.....++++++. .+|+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 4667899999999999999999999999999999999875321 13333567888775 5999999999 4577777
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
+.+-....||+|++++|++.++-...+.+.+.+..
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 76544446899999999999985555555555544
No 48
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.22 E-value=5.7e-11 Score=107.03 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=81.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
..+.|++|+|+|+|.||+.+++.++++|++|+++++++.+.. ++ ...++++.++.+|+|+.+.. +.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 347899999999999999999999999999999988765432 33 23456788899999988653 456788
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615 150 KDVMAELGKGGMIINVGRGAL-IDEKEMLQ 178 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~-vd~~al~~ 178 (223)
...+..||+|++++|+|++.+ +|...|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777664
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=99.20 E-value=5.5e-11 Score=120.75 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhcc--CHH
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHII--NKD 151 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li--~~~ 151 (223)
.++|||||+|.||..||++|...|++|.+|||++.... +.....+..+++++||+|++|+|..++++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999999875432 33345788999999999999999888888887 345
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCceEEEeeC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQ--GDINGVGLDV 192 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~--~~i~~a~lDV 192 (223)
.++.+++|.++||++....-....+.+.+++ ..+. ++|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 7888999999999999999999999999988 5665 6664
No 50
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.20 E-value=5.1e-11 Score=102.83 Aligned_cols=107 Identities=12% Similarity=0.160 Sum_probs=88.5
Q ss_pred EEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC--HHHHhcC
Q 035615 84 IVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN--KDVMAEL 156 (223)
Q Consensus 84 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~--~~~l~~m 156 (223)
|||+|.||..+|+.|...|++|.+|||+++... +.....++.++++++|+|++|+|..+..+.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999999875432 333456888999999999999997777777662 4566788
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
+++.++||++....-....+.+.+++..+. ++|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999988877788888888887776 6773
No 51
>PLN02256 arogenate dehydrogenase
Probab=99.17 E-value=2.5e-10 Score=99.40 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=90.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhh-cCCcEEEEeccCChhhhhccCHH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLA-VNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
-++++|+|||+|.||+.+++.++..|++|++++++.... .+.....+.++++ ..+|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 357899999999999999999999999999999875321 1233345777776 479999999994 3566766443
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC-CCCCCCCceEEccCC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP-KEPLRLDNIVLLPCQ 215 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~-~~l~~~~nv~~TPH~ 215 (223)
....+++++++++++..+-+..+++.+.+..+. . .+=....-+... ...+.-.+++++|..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPESGKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCCCccccCCCeEEEecce
Confidence 256689999999999977665666666654321 1 222222211111 134555567777653
No 52
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.16 E-value=1.2e-10 Score=106.70 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=92.0
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----C------cccccChhhhh---cCCcEEEEeccCChhhhhcc
Q 035615 82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----L------FPYCANVYDLA---VNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~------~~~~~~l~el~---~~aDiv~~~~p~t~~t~~li 148 (223)
|||||+|.||+.+|++|...|++|.+|||+++..+ . .....++++++ +++|+|++++|..+.++.++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 89999999999999999999999999999876432 1 22345677765 46899999999888888887
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee--CCCCC
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD--VFEND 196 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD--V~~~E 196 (223)
.+.+..+++|.++||++....-|.....+.+.+..+. ++| |...+
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvdapVsGG~ 128 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGSGVSGGE 128 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcCCCCCCH
Confidence 4677889999999999999999999999999998887 555 44443
No 53
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.10 E-value=4.2e-10 Score=98.08 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=69.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh-cC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA-EL 156 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~-~m 156 (223)
.+++|+|||+|.||+.+|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +..+.+++ +... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence 367899999999999999999999999999998753 4688899999999999996 46777763 3323 47
Q ss_pred CCCcEEEEcCCCcc
Q 035615 157 GKGGMIINVGRGAL 170 (223)
Q Consensus 157 k~ga~lIN~arg~~ 170 (223)
++++++|++++|-.
T Consensus 73 ~~~~ivi~~s~gi~ 86 (308)
T PRK14619 73 PPETIIVTATKGLD 86 (308)
T ss_pred CCCcEEEEeCCccc
Confidence 88999999988543
No 54
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.05 E-value=7e-10 Score=100.76 Aligned_cols=132 Identities=9% Similarity=0.071 Sum_probs=93.0
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----Cc----------------ccccChhhhhcCCcEEEEec
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LF----------------PYCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~----------------~~~~~l~el~~~aDiv~~~~ 138 (223)
.++|||||+|.||..+|..+.. |++|++||+++.+.+ +. ....+..+.+++||++++|+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 4789999999999999999877 799999998876432 11 12334345689999999999
Q ss_pred cCC------hhhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc-CCce-E-EEeeCCCCCCCCCC----C
Q 035615 139 ALT------EQTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFL-VQ-GDIN-G-VGLDVFENDPNVPK----E 202 (223)
Q Consensus 139 p~t------~~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL-~~-~~i~-~-a~lDV~~~EP~~~~----~ 202 (223)
|.. ++...++ .+...+.+++|.++|+.|+-.+-..+.+++.+ ++ .++. + ...=+|.+||..+. .
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 954 2334444 24567789999999999999988777655443 33 1232 1 11125778998653 5
Q ss_pred CCCCCceEE
Q 035615 203 PLRLDNIVL 211 (223)
Q Consensus 203 l~~~~nv~~ 211 (223)
+...|+++.
T Consensus 165 ~~~~~riv~ 173 (425)
T PRK15182 165 LTNIKKITS 173 (425)
T ss_pred ccCCCeEEE
Confidence 777777765
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.05 E-value=8.6e-10 Score=100.54 Aligned_cols=128 Identities=20% Similarity=0.362 Sum_probs=92.2
Q ss_pred CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
++|+||| +|.||+.+|+.|+..|++|.+++|++.... +.....+..+.+.++|+|++++|. ..+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799998 899999999999999999999998765421 223345777889999999999995 3455555 456
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCC--CCCCCCCCCceEEccCC
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPN--VPKEPLRLDNIVLLPCQ 215 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~--~~~~l~~~~nv~~TPH~ 215 (223)
...+++++++++++.......+++.+.+..+ .. ++.. -|. +..+++.-..+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999986655555666555432 22 2332 233 22256777789999974
No 56
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.05 E-value=7.7e-10 Score=96.70 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC-CCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR-KRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~-~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
|+||+|||||+|+||+++|+.|+.+|++|+++++. .+.. .++. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57999999999999999999999999998765443 2221 1232 34688889999999999994423 334456
Q ss_pred HHHhcCCCCcEEEEcCCCccc
Q 035615 151 DVMAELGKGGMIINVGRGALI 171 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~v 171 (223)
+....++++. +|.++-|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6777788886 7888777544
No 57
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.01 E-value=2.2e-09 Score=92.29 Aligned_cols=129 Identities=21% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC--CC-----Cccc--ccCh-hhhhcCCcEEEEeccCChhhhhcc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP--SV-----LFPY--CANV-YDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~-----~~~~--~~~l-~el~~~aDiv~~~~p~t~~t~~li 148 (223)
.++|+|+|+|.||+.+|+.++..|+.|.+++++... .. +... ..+. .+....+|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 478999999999999999999999987555444432 21 1111 1232 56778899999999954 555655
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----CCCCCCCCceEEccCC
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----PKEPLRLDNIVLLPCQ 215 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----~~~l~~~~nv~~TPH~ 215 (223)
++....+|+|+++++++.-+----+++.+.+.+.. . +...-|.. ..+++..-.+++||.-
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCC
Confidence 45555799999999999877655556555554432 2 22233432 2378888889999964
No 58
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.01 E-value=6.5e-10 Score=87.43 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=61.9
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
|++|+|+|||||..|++.|..|+..|++|++-.|...+. .++ ...+.+|.++++|+|++.+|.. ....+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 689999999999999999999999999998777665521 233 3568999999999999999943 33455667
Q ss_pred HHHhcCCCCcEEEE
Q 035615 151 DVMAELGKGGMIIN 164 (223)
Q Consensus 151 ~~l~~mk~ga~lIN 164 (223)
+....||+|..|+=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88889999997763
No 59
>PLN02712 arogenate dehydrogenase
Probab=98.98 E-value=1.2e-09 Score=104.28 Aligned_cols=105 Identities=17% Similarity=0.323 Sum_probs=76.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhh-cCCcEEEEeccCChhhhhccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLA-VNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDiv~~~~p~t~~t~~li~ 149 (223)
.+-+.++|||||+|.||+.+|+.++.+|++|.+|+++.... .+.....++++++ .++|+|++|+|. ..+..++.
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~ 126 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK 126 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence 34456799999999999999999999999999999874321 1333456777865 569999999994 46777776
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFL 180 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL 180 (223)
+-.+..++++++|+|++.-+..--+++.+.+
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 5444668999999999755532223344444
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.98 E-value=1.8e-09 Score=92.81 Aligned_cols=129 Identities=17% Similarity=0.206 Sum_probs=83.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
++|+|||+|.||+.+|+.|+..|++|.+|+++++... +. ....+..+.++++|+|++++|.. ....++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence 4799999999999999999999999999998765322 11 11222235688999999999943 333333 5666
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC---CCCCCC-C---CCCCCCCceEEccCCC
Q 035615 154 AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF---ENDPNV-P---KEPLRLDNIVLLPCQN 216 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~---~~EP~~-~---~~l~~~~nv~~TPH~a 216 (223)
..+++++++++++.-+.- ..+++...... ++... ..|... . ..|+.-.++++||+-.
T Consensus 79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred HhCCCCcEEEeCcchHHH----HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 778999999999875532 23333322112 23322 222110 0 1266667889999754
No 61
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.97 E-value=5.4e-10 Score=100.73 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=74.6
Q ss_pred CCCCCCCCCC-ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC------CCC-----CCcccccChhhhhcCC
Q 035615 64 LWAKTGDYPL-GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK------RPS-----VLFPYCANVYDLAVNS 131 (223)
Q Consensus 64 ~w~~~~~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~~~-----~~~~~~~~l~el~~~a 131 (223)
-|.+. .|+. ...|+||||+|||+|++|++-|..|+..|++|.+--|.. +.. .++ ...+++|++++|
T Consensus 21 ~~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~A 98 (487)
T PRK05225 21 FMDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQA 98 (487)
T ss_pred ecchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhC
Confidence 46543 3322 356999999999999999988888888888877433321 111 233 346899999999
Q ss_pred cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
|+|++.+|++ . .+.+.++.++.||+|++|. .|.|=
T Consensus 99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 9999999988 3 6667799999999999765 44443
No 62
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.96 E-value=1.1e-09 Score=94.81 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=75.8
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C------------cccccChhhhhcCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L------------FPYCANVYDLAVNS 131 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~el~~~a 131 (223)
++|+|||+|.||..+|+.+...|++|++||+++.... + .....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999998764421 0 01122233568999
Q ss_pred cEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 035615 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~ 181 (223)
|+|+.++|..++.+..+-++..+.++++++|+ |+|.-. ...+.+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 99999999998888877677777789999887 776664 444555554
No 63
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.96 E-value=2.1e-09 Score=93.73 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=83.6
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
.+.||++.|.|||..|+.+|++++++|++|++..-.|-... ++ .+..+++..+.+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf-~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCc-EEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 47899999999999999999999999999999877665432 33 35688999999999998764 6889999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 035615 151 DVMAELGKGGMIINVGRGAL-IDEKEMLQ 178 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~-vd~~al~~ 178 (223)
+.|..||.|+++-|.+.-.. ||.+.|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999998776 67777664
No 64
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=3.2e-09 Score=91.60 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=80.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-----------------------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-----------------------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|++||++++.... .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987654211 1123567788999
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLDVF 193 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lDV~ 193 (223)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++. .-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999987766555445566778999877 78877554 456655543 2223466655
No 65
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.95 E-value=6e-10 Score=80.29 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=62.1
Q ss_pred EEEEEecChHHHHHHHHHHhCC---CEEE-EEcCCCCCCC------Cccccc-ChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFG---FIIS-YNSRRKRPSV------LFPYCA-NVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
||||||+|+||+++++.+...| .+|. +++|+++... +..... +..|+++++|+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8888 5588876542 222233 7889999999999999833 333443
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 035615 150 KDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg 168 (223)
++. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 556788999988654
No 66
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.93 E-value=4.5e-09 Score=90.86 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=67.9
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||+|+|||.| .||+.+|.+|...|++|.+|++... ++.++.++||+|+++++.. +.+.+.+
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~----~~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRP----RLIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCCh----hcccHhh
Confidence 447999999999996 9999999999999999999976542 7889999999999999843 3555554
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+|+|+++||+|--.
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 79999999999544
No 67
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.92 E-value=2.6e-08 Score=88.84 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=83.1
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH-
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQA-FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM- 153 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l- 153 (223)
+...||+|||+ |.||+.+|+.|+. +|.+|+++|+... ...++++.+++||+|++|+|.. .+..++. +..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~-~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIE-EYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHhh
Confidence 45689999999 9999999999996 5899999998522 1246778899999999999944 4455542 232
Q ss_pred --hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC---CCCCCCCceEEccC
Q 035615 154 --AELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP---KEPLRLDNIVLLPC 214 (223)
Q Consensus 154 --~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~---~~l~~~~nv~~TPH 214 (223)
..+|+++++++++.-+-- +.+++..... ++-..-|..- ..+++-.++++||.
T Consensus 74 ~~~~l~~~~iVtDVgSvK~~----i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQA----PVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhcCCCCCeEEEECCCCcHH----HHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 237999999999986632 2222222211 2233344421 25677778899986
No 68
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.92 E-value=6.1e-09 Score=88.66 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=74.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC----EEEEE-cCCCCCCC-----CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF----IISYN-SRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
++|||||+|+||+++++.|...|+ +|+++ +|+++... +.....+..+++++||+|++++| .+..+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999998887 88888 88765432 33345677888999999999997 55566666
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3455667889999988665 466666665543
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.92 E-value=7.3e-09 Score=92.20 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=86.7
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc--cccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP--YCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|+|||+|.||+++|+.++..|++|.+|++++.... +.. ...++++++++||+|++++|. +.+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4799999999999999999999998888877654321 111 134677889999999999995 35666663
Q ss_pred HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCC----------CCCCCCCceEEccCCC
Q 035615 151 DVMA-ELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVP----------KEPLRLDNIVLLPCQN 216 (223)
Q Consensus 151 ~~l~-~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~----------~~l~~~~nv~~TPH~a 216 (223)
+... .+++++++++++.-+.-..+++.+.+. .... +++.+ |... ..|+.-...++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 3433 478999999998877544444443322 2222 44432 3221 1466666788888643
No 70
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.90 E-value=1.2e-08 Score=83.70 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=81.7
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccChhhhhc-CCcEEEEeccCChhhhhc
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCANVYDLAV-NSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~l 147 (223)
.+++||+++|+|+|+||+.+|+.|..+|++|+++|+++.... +.. ..+.++++. +||+++.|.. .++
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----ccc
Confidence 468999999999999999999999999999999998765322 222 224456664 7999986654 468
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
++++.++.|+. .+++.-+.+.+-| ..-.+.|+++.+.
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 99999999974 5888988988876 5567778888776
No 71
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=9.3e-09 Score=85.37 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=94.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhh---hcCCcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDL---AVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
+++|.||+|+||..+++++...|.+|++||+++...+ ++....+++|+ +...-+|.+.+|...-|..+| ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 5799999999999999999999999999999886432 44445677766 456789999999887777777 45
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~ 193 (223)
+-..|.+|-++|+-+...--|....++.|+++.|. ++||=
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 77788999999999999999999999999999997 89984
No 72
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.89 E-value=3.4e-09 Score=94.69 Aligned_cols=91 Identities=13% Similarity=0.210 Sum_probs=72.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc------ccccChhhhhcCCcEEEEeccCC-h
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF------PYCANVYDLAVNSDVLVVCCALT-E 142 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~------~~~~~l~el~~~aDiv~~~~p~t-~ 142 (223)
.+.++++.|+|.|.+|+.+++.++.+|++|.++|+++...+ +. ....++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36788899999999999999999999999999998754321 11 01134677889999999998643 2
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcC
Q 035615 143 QTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345678999999999999999987
No 73
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.88 E-value=9.3e-09 Score=89.52 Aligned_cols=134 Identities=14% Similarity=0.224 Sum_probs=86.2
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc--ccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF--PYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
.++|+|||+|.||+.+++.++..|. +|++|++++.... +. ....++++.++++|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4789999999999999999998885 8999999765322 11 12346778889999999999953 333333
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC---CCCCCC---C-CCCCCCCceEEccCCCC
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF---ENDPNV---P-KEPLRLDNIVLLPCQNA 217 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~---~~EP~~---~-~~l~~~~nv~~TPH~a~ 217 (223)
++....++++.++++++....--.+++.+.+.. .+. ++..+ ..|-.. . .+|+.-.++++||+-++
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 445567899999999976543222233333222 222 33332 222111 1 15666677889987543
No 74
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.87 E-value=1.3e-08 Score=92.29 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=76.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----cc--cccChhhh---------------hcCCcEEEEec
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL----FP--YCANVYDL---------------AVNSDVLVVCC 138 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~--~~~~l~el---------------~~~aDiv~~~~ 138 (223)
++|+|||+|.||..+|..|...|++|++||+++...+. .. ....++++ ++.||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999988764321 00 11233333 34799999999
Q ss_pred cCC------hhhhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 139 ALT------EQTHHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 139 p~t------~~t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
|.. ++...+. -+...+.+++|+++|+.|.-..-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 953 1222222 24567778999999999998888788887777654
No 75
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.85 E-value=1.4e-08 Score=88.93 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=83.7
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------------CcccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------------LFPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------------~~~~~~~l~el~~~aDiv 134 (223)
++|+|||.|.||..+|..+...|++|..||++++... ......++++.++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999998764211 012346788999999999
Q ss_pred EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615 135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193 (223)
Q Consensus 135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~ 193 (223)
+-++|.+.+.+..+-++.-+.+++++ +|.++.. -+...++.+.++. .-+..++--|
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~-p~R~~g~Hff 143 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH-PERCVVGHPF 143 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC-cccEEEEecC
Confidence 99999998888877788888899998 4544444 3466777777754 2222354434
No 76
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.83 E-value=2.4e-08 Score=89.37 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 35 LPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 35 ~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
....++-.+-.++..+|++. ++..+... .-..++|+||| +|.||+.+|+.|+..|+.|.+|+++..
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~~-------~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~ 133 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDKGFKTL-------NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW 133 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHhccccc-------CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc
Confidence 34445666666666666432 22222211 11458999999 999999999999999999999998531
Q ss_pred CCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 035615 114 PSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQF 179 (223)
Q Consensus 114 ~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~a 179 (223)
.+.++++++||+|++|+|... +..++ ++... +++|+++++++.-+..-..++.+.
T Consensus 134 --------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 134 --------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred --------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 356788999999999999653 45555 34444 899999999987654333344443
No 77
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.82 E-value=2e-08 Score=80.26 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=70.1
Q ss_pred cccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+|.|+++.|||.|.| |..+++.|...|++|.+.+|+. .++.+.++++|+|+.+++.. + +|+++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence 3589999999999996 8889999999999999998763 46788999999999998733 3 788775
Q ss_pred hcCCCCcEEEEcCCCcccC
Q 035615 154 AELGKGGMIINVGRGALID 172 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd 172 (223)
++++.++||++...-+|
T Consensus 106 --~~~~~viIDla~prdvd 122 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD 122 (168)
T ss_pred --ccCCeEEEEccCCCccc
Confidence 57899999999988777
No 78
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.81 E-value=2.6e-08 Score=77.64 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=78.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Cc----ccccChhhhhcCCcEEEEeccCChh-
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LF----PYCANVYDLAVNSDVLVVCCALTEQ- 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~el~~~aDiv~~~~p~t~~- 143 (223)
++.+++++|+|.|.||+.+++.+...| .+|.+++|+++... .. ....+.+++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 356899999999999999999999886 68999998865432 11 1345677778999999999996643
Q ss_pred hhh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 144 THH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 144 t~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
... .+.. ..++++.+++|++..+... .+.+.+++..+.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 222 2332 2368999999998875443 788888776654
No 79
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=3.3e-08 Score=85.29 Aligned_cols=127 Identities=7% Similarity=0.086 Sum_probs=85.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------------CcccccChhhhhc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------------LFPYCANVYDLAV 129 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~el~~ 129 (223)
++|+|||.|.||..+|..+...|++|..||++++... ......++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998764211 0012467788899
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCCCCce
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPKEPLRLDNI 209 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nv 209 (223)
.||+|+.++|...+...-+-++..+.++++++|+..+.+ +....+.+.++... +..++--| .|.+..+.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf~-------~p~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHFA-------NEIWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcCC-------CCCCcCCeE
Confidence 999999999966554444335566677888888543333 34456666654322 22344322 245556677
Q ss_pred EEccCCC
Q 035615 210 VLLPCQN 216 (223)
Q Consensus 210 ~~TPH~a 216 (223)
.+.|+-.
T Consensus 154 evv~~~~ 160 (287)
T PRK08293 154 EIMGHPG 160 (287)
T ss_pred EEeCCCC
Confidence 7776543
No 80
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=1.5e-08 Score=87.56 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=77.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998764321 1 11234554 4789
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
||+|+.++|...+.+..+-++..+.++++++|+ |+|.-. ...+.+.+... -+..++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence 999999999876655444356777789999998 665544 34577666432 1223555554
No 81
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.80 E-value=1.8e-08 Score=88.39 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------C------cccccChhhhhcCCcEEEEecc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------L------FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~el~~~aDiv~~~~p 139 (223)
.++|+|||.|.||..+|..|...|++|.+|+|+++..+ + .....++++.++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 46899999999999999999999999999999754211 1 1234578888899999999999
Q ss_pred CChhhhhccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 035615 140 LTEQTHHIINKDVMAELGKGGMIINVGRG-ALID--EKEMLQFLVQ 182 (223)
Q Consensus 140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg-~~vd--~~al~~aL~~ 182 (223)
.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 55 22 5566778999999999997 3332 4456666654
No 82
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.79 E-value=2.5e-08 Score=85.71 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=73.3
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCC-CC------CcccccChhhhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRP-SV------LFPYCANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~-~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
+.++|+|||+|+||+++++.|...| .+|++++|+... .. +.....+..+++++||+|++++|. .....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence 3579999999999999999998887 678999986532 11 333456778889999999999983 34444
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
++ .+....++++.++|++.-|- ..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 44 44555678889999986553 5556666554
No 83
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.78 E-value=3.1e-08 Score=85.72 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=66.4
Q ss_pred cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEc-CCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNS-RRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
.+++||+|+||| .|.||+.+|.+|...|+.|.+|+ |+. ++++++++||+|+++++... ++.+.+
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 368999999999 99999999999999999999995 543 57899999999999998543 455443
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 035615 153 MAELGKGGMIINVGRGAL 170 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~ 170 (223)
+|+|+++||+|--.+
T Consensus 220 ---lk~GavVIDvGin~~ 234 (296)
T PRK14188 220 ---IKPGATVIDVGINRI 234 (296)
T ss_pred ---ecCCCEEEEcCCccc
Confidence 799999999986543
No 84
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.77 E-value=1.6e-08 Score=86.71 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=74.8
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
.++|||||+|+||+++++.|...|+ +|++++|+++... +.....+..+++++||+|++++| ......++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 3589999999999999999988774 6899998765422 23334577788999999999999 35566665
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
++....++++.++|.+.-| ++.+.|.+.+.
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3454557888999999887 45566666664
No 85
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.77 E-value=2.9e-08 Score=91.96 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=79.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv 134 (223)
++|||||.|.||..+|..+...|++|.+||+++.... + .....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999998865421 1 22346788899999999
Q ss_pred EEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615 135 VVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195 (223)
Q Consensus 135 ~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~ 195 (223)
+.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+..... ...+-+-+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n 141 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPER--LFVAHPYN 141 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence 999998766565443445556777765 55555443 35577777754332 35554433
No 86
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.77 E-value=1.7e-08 Score=86.56 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=77.6
Q ss_pred CCCEEEEEecChHHHHHHHHHHh--CCCEEE-EEcCCCCCCC------C-cccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQA--FGFIIS-YNSRRKRPSV------L-FPYCANVYDLAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~el~~~aDiv~~~~p~t~~t~~l 147 (223)
..++|||||+|+||+.+++.+.. .++++. +++++++... + ...+.++++++.++|+|++|+|.... ..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e- 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA- 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH-
Confidence 35799999999999999999986 478875 6788764322 1 13467899999999999999994422 22
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+ ....++.|.-++..++|.+.+.++|.++.++++..
T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 23334667777778899888899999998886654
No 87
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.76 E-value=3.6e-08 Score=89.25 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv 134 (223)
++|+|||+|.||..+|..|...|++|++||+++.... + .....+..+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 4799999999999999999999999999998765321 1 12235677888999999
Q ss_pred EEeccCChh------hhhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHH-HHcC-CceEEEeeC---CCCCCCCCC
Q 035615 135 VVCCALTEQ------THHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQF-LVQG-DINGVGLDV---FENDPNVPK 201 (223)
Q Consensus 135 ~~~~p~t~~------t~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~a-L~~~-~i~~a~lDV---~~~EP~~~~ 201 (223)
++|+|.... ...+. -....+.++++.++|+.|.-.+-..+.+.+. +++. .+. .+.|. +.+|...+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G 159 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREG 159 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCC
Confidence 999995432 11121 1345667899999999987666666666544 4441 111 12332 345544332
Q ss_pred ----CCCCCCceEEc
Q 035615 202 ----EPLRLDNIVLL 212 (223)
Q Consensus 202 ----~l~~~~nv~~T 212 (223)
.++..+.+++.
T Consensus 160 ~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 160 NAVHDLLNPDRIVGG 174 (411)
T ss_pred ChhhhhcCCCEEEEe
Confidence 35566677664
No 88
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.76 E-value=3.6e-08 Score=84.71 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=68.4
Q ss_pred cccCCCEEEEEecChH-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLGNI-GSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.++.||++.|||.|.+ |+.++..|...|++|+.+... ..++.+.+++||+|++++| +.++++.+
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~~-- 218 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTAD-- 218 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCHH--
Confidence 4689999999999999 999999999999999887543 2478899999999999998 45678874
Q ss_pred hcCCCCcEEEEcCCCcc
Q 035615 154 AELGKGGMIINVGRGAL 170 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~ 170 (223)
.+|+|+++||+|--.+
T Consensus 219 -~ik~gavVIDVGin~~ 234 (285)
T PRK14189 219 -MVKPGATVIDVGMNRD 234 (285)
T ss_pred -HcCCCCEEEEcccccc
Confidence 5799999999996553
No 89
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.75 E-value=4.1e-08 Score=88.27 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=86.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------------------Cccc--ccChhhhhcCCcEEEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------------------LFPY--CANVYDLAVNSDVLVV 136 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~el~~~aDiv~~ 136 (223)
++|+|||+|.||..+|..+. .|++|++||++++... .... ..+..+.++.||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997776 4999999998765421 0111 1235677899999999
Q ss_pred eccCCh----------hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCCCC----C
Q 035615 137 CCALTE----------QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNVPK----E 202 (223)
Q Consensus 137 ~~p~t~----------~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~~~----~ 202 (223)
|+|... ..+..+ +...+ +++|.++|+.|.-.+=-.+.+.+.+.+..+. |.+|.+.+. .
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d 151 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD 151 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence 999541 112222 23344 7999999999999988888888887765443 467776543 4
Q ss_pred CCCCCceEE
Q 035615 203 PLRLDNIVL 211 (223)
Q Consensus 203 l~~~~nv~~ 211 (223)
+...|+|++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 666677665
No 90
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=98.73 E-value=6.4e-09 Score=79.62 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=36.2
Q ss_pred CccceEEEEccccchhHhHHHHHhcCC----CCCCCcchHHHHH
Q 035615 3 CYQTNLYACILSEYQNWLKQLIKQKSI----AKQADLPIVADLA 42 (223)
Q Consensus 3 ~p~Lk~i~~~~aG~d~id~~~~~~~~i----~~~~~~~~vAE~~ 42 (223)
+|+||||++.++|+||||+++++++|| +||+++.+||||+
T Consensus 58 ~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 58 APNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 599999999999999999999999999 6999999999999
No 91
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.72 E-value=2.8e-08 Score=86.66 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=69.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------CcccccChhhhhcCCcEEEEeccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LFPYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~el~~~aDiv~~~~p~ 140 (223)
++|+|||.|.||..+|..|...|++|.+|+|++...+ ......+.++.++.+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998753211 122345677888999999999995
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGRGALI 171 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~v 171 (223)
..++.++ ++..+.+++++++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4566665 3455667889999999865443
No 92
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.72 E-value=1.2e-07 Score=82.39 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCCC----------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615 91 GSEVLNRLQAFGFIISYNSRRKRPS----------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG 160 (223)
Q Consensus 91 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga 160 (223)
|+.||++|...|++|++|||++... .++....+..++++++|+|++++|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 7899999999999999998875422 144556788999999999999999888888887 56888999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHc
Q 035615 161 MIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 161 ~lIN~arg~~vd~~al~~aL~~ 182 (223)
++||++.. +.+.+++.|+.
T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred EEEECCCC---CHHHHHHHHHH
Confidence 99999765 45566666655
No 93
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.70 E-value=4.2e-08 Score=84.13 Aligned_cols=127 Identities=14% Similarity=0.203 Sum_probs=80.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Ccc-cccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
++|+|||+|.||+.+|+.|+..|+ +|++||+++.... +.. ...+.+++. ++|+|++++|.. .+..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 479999999999999999998885 7889998764321 221 234666765 599999999954 344444 44
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC---C---CCCCC-CCCCCCceEEccCC
Q 035615 152 VMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN---D---PNVPK-EPLRLDNIVLLPCQ 215 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~---E---P~~~~-~l~~~~nv~~TPH~ 215 (223)
..+ +++++++++++.- ...+.+.+.+.. .+.+++.... | |.... .+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 556 8899999997552 344555554431 1123444332 1 11111 25554567788753
No 94
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.70 E-value=2.3e-08 Score=78.83 Aligned_cols=87 Identities=15% Similarity=0.315 Sum_probs=63.8
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------C------CcccccChhhhhcCCcEEEEeccCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------V------LFPYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~el~~~aDiv~~~~p~t 141 (223)
+|+|+|.|++|.++|..|...|.+|..|.|+++.. . ......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999875321 0 1123578999999999999999943
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
..+.++ ++....++++..+|++..|=
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 344444 45566678899999998774
No 95
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.70 E-value=1.2e-08 Score=78.48 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=70.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCChh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
+++++++.|||.|.+|+.+++.|...|++ |++++|+.++.. ......++.+.+.++|+|+.+.|..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~-- 86 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG-- 86 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT--
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC--
Confidence 68999999999999999999999999997 999999875432 0123456667789999999998854
Q ss_pred hhhccCHHHHhcCCCCc-EEEEcCCCcccC
Q 035615 144 THHIINKDVMAELGKGG-MIINVGRGALID 172 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga-~lIN~arg~~vd 172 (223)
...+.++.++..++.. ++++++.-.-||
T Consensus 87 -~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 87 -MPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp -STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred -CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 3378888887665433 888887654443
No 96
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.69 E-value=9.3e-09 Score=78.39 Aligned_cols=88 Identities=11% Similarity=0.238 Sum_probs=54.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
-...+|+|||.|++|..+++.|+..|+.|. +|+|+....+ +...+.+++|+++++|++++++|.. ....+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va- 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA- 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-
Confidence 346789999999999999999999999986 4577653321 2234567889999999999999965 334332
Q ss_pred HHHHhc--CCCCcEEEEcC
Q 035615 150 KDVMAE--LGKGGMIINVG 166 (223)
Q Consensus 150 ~~~l~~--mk~ga~lIN~a 166 (223)
+++-.. .++|.+++-+|
T Consensus 86 ~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHCC--S-TT-EEEES-
T ss_pred HHHHHhccCCCCcEEEECC
Confidence 233322 57899999886
No 97
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.69 E-value=3.3e-08 Score=84.71 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=77.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
.+.||.+.|.|||.+|+..|+.|++||.+|++....|-... +......++|+.++.|+++.+. ..+.+|..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 37899999999999999999999999999999876664322 2234678999999999998865 468889999
Q ss_pred HHhcCCCCcEEEEcCCCcc
Q 035615 152 VMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~ 170 (223)
.|.+||.++++.|++.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987665
No 98
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.69 E-value=8.3e-08 Score=82.92 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=77.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------Cc-------------ccccChhhh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LF-------------PYCANVYDL 127 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el 127 (223)
++|+|||.|.||..+|..+...|++|++||++++..+ +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999998764321 00 012234 56
Q ss_pred hcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615 128 AVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195 (223)
Q Consensus 128 ~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~ 195 (223)
+++||+|+.++|...+.+.-+-++.-+.++++++|+....| +....+.+.+... -+..++.-|.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P 147 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNP 147 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCC
Confidence 78999999999976554443334455667889998877666 4556677776432 22235554443
No 99
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.68 E-value=5.1e-08 Score=90.55 Aligned_cols=113 Identities=13% Similarity=0.176 Sum_probs=83.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|||||.|.||+.+|..+...|++|.+||++++..+ + .....++++ ++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6799999999999999999999999999998876422 1 122356655 569
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMI-INVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~l-IN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
||+|+-++|...+.+..+-.+.-+.++++++| .|+|.-.+- .+.++++.. -+..++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p-~r~~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHP-ERVAGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCc-ccEEEEeecCCcc
Confidence 99999999998888876655555567899999 499877763 566666532 1224666666444
No 100
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.68 E-value=1.3e-08 Score=84.14 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHH--HhCCCEEE-EEc
Q 035615 33 ADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRL--QAFGFIIS-YNS 109 (223)
Q Consensus 33 ~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~ 109 (223)
......++|.+..++...|++.. | . ..++++|||+|.+|+.+++.+ ...|+++. ++|
T Consensus 58 ~~G~~~~gy~v~~l~~~~~~~l~---------~----------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 58 EFGKRGVGYNVEELLEFIEKILG---------L----------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred hcCCCCCCeeHHHHHHHHHHHhC---------C----------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 34455567888888887777531 1 1 356899999999999999863 35788876 566
Q ss_pred CCCCCCC----C--cccccChhhhhcC--CcEEEEeccCChh---hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615 110 RRKRPSV----L--FPYCANVYDLAVN--SDVLVVCCALTEQ---THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQ 178 (223)
Q Consensus 110 ~~~~~~~----~--~~~~~~l~el~~~--aDiv~~~~p~t~~---t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~ 178 (223)
+++.... + .....++++++++ .|.+++++|.... ...+.......-+....+.+|+.+|.+|+.++|..
T Consensus 118 ~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~ 197 (213)
T PRK05472 118 VDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTV 197 (213)
T ss_pred CChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHH
Confidence 6543321 1 1123567787754 9999999997654 22233333344456667899999999999999999
Q ss_pred HHHc
Q 035615 179 FLVQ 182 (223)
Q Consensus 179 aL~~ 182 (223)
+|..
T Consensus 198 ~l~~ 201 (213)
T PRK05472 198 ELQT 201 (213)
T ss_pred HHHH
Confidence 9874
No 101
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.67 E-value=1e-07 Score=81.90 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||+++|||. |.+|+.+|..|...|++|.++... ..++.+.+++||+|+++++.. +++...+
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence 44689999999999 999999999999999999988322 137889999999999999833 3465554
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 79999999998544
No 102
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.66 E-value=1.4e-07 Score=82.13 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=73.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|.+||+++.... + .....++.+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999999864211 1 1234678888999
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~ 193 (223)
||+|+.++|...+....+-++.-+..++..++. .+.. ......+.+.+..... ...|-+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp 141 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHP 141 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEec
Confidence 999999999765444333233323345555443 3333 3456677777754332 344543
No 103
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.65 E-value=8.1e-08 Score=88.00 Aligned_cols=107 Identities=14% Similarity=0.252 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcC---CcEEEEeccCChhhhhccCHHHHhcC
Q 035615 90 IGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVN---SDVLVVCCALTEQTHHIINKDVMAEL 156 (223)
Q Consensus 90 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~---aDiv~~~~p~t~~t~~li~~~~l~~m 156 (223)
||+.||++|...|++|.+|||++++.+ ++....+++|+++. +|+|++++|..+.++.++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999876432 24456789998874 899999999999999988 5688899
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 157 GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 157 k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999999833333555443
No 104
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.64 E-value=2.1e-07 Score=80.08 Aligned_cols=100 Identities=7% Similarity=0.079 Sum_probs=73.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|+++|++++... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999997765431 1 01123444 4789
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
||+|+.++|...+.+.-+-++..+.++++++++....| +....|.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999877666544445566778899988544444 555678777743
No 105
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.64 E-value=9.8e-08 Score=88.53 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV 129 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~ 129 (223)
=++|||||.|.||+.+|..+...|++|.+||++++..+ + .....++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 46799999999999999999999999999998865421 1 112456655 56
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
.||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+ ..+.+.++. ..+..++.-|.+-|
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence 9999999999888877765555556678888776 6665554 456666653 23345777776555
No 106
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.63 E-value=8.6e-08 Score=83.46 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=69.1
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------C--------------cccccChhhhhcCCcEEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------L--------------FPYCANVYDLAVNSDVLV 135 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~el~~~aDiv~ 135 (223)
++|+|||.|.||..+|..+...|++|+++|++.+... + .....+.++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998664321 0 112346777889999999
Q ss_pred EeccCChhh-hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 136 VCCALTEQT-HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 136 ~~~p~t~~t-~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
+++|...+. ..++ ++.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999966543 3343 3333446777766533333 33557777664
No 107
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.62 E-value=7.8e-08 Score=83.11 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=79.1
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~~ 130 (223)
++|||||.|.||..+|..+...|++|..||++++..+ +. ....++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999998876421 10 023456 45799
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAEL-GKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~m-k~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~ 195 (223)
||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+. ++..+++.. -+..++.-|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~-~r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRP-GRVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCC-ccEEEEecCCC
Confidence 99999999999887776655444445 7899998776665444 344444322 12246665654
No 108
>PRK07680 late competence protein ComER; Validated
Probab=98.61 E-value=1.4e-07 Score=80.82 Aligned_cols=98 Identities=12% Similarity=0.309 Sum_probs=72.5
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCC-------CcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSV-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
++|+|||+|+||+.+++.|...|. +|.+++|+++... +.....+..+++.++|+|++++| ......++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 379999999999999999988883 6899999764321 23334577788899999999997 33345554
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3444567788899999855 36667766654
No 109
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=2.1e-07 Score=80.16 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=67.3
Q ss_pred cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+++|+++.|||.|. +|+.+|+.|...|++|+.+++.. .++.+.+++||+|+.+++. .+++.++.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~- 219 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV- 219 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence 469999999999998 99999999999999998887642 3688999999999999973 34677764
Q ss_pred hcCCCCcEEEEcCCCc
Q 035615 154 AELGKGGMIINVGRGA 169 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~ 169 (223)
+|+|+++||+|--.
T Consensus 220 --vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 --VKEGAVIIDVGNTP 233 (286)
T ss_pred --cCCCcEEEEcCCCc
Confidence 58999999999654
No 110
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.59 E-value=1.3e-07 Score=80.33 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=71.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCE---EEEEcCCCCCCC-------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFI---ISYNSRRKRPSV-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
++|||||+|+||+.+++.|...|.. +.+++|+.+... +.....+..++++++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 3799999999999999999887753 578888765422 12334678888999999999998 344555543
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 150 KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
. +. ++++.++|.+. .-+..+.|.+.+..+
T Consensus 80 ~--l~-~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A--LR-FRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred H--hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 22 57888999987 347777888877653
No 111
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.58 E-value=2e-07 Score=90.12 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=89.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC-----Ccc--cccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV-----LFP--YCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~-----~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|+|||+|.||+++++.++..| .+|++||++..... +.. ...+++++++++|+|++++|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 47999998865422 221 2346778899999999999943 444444 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCCCC----------CCCCCCCCceEEccCCCC
Q 035615 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDPNV----------PKEPLRLDNIVLLPCQNA 217 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP~~----------~~~l~~~~nv~~TPH~a~ 217 (223)
+..+.++++.++++++..+..-.+.+.+.+....+ .+..+-|.. ..+|+.-.++++||+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 44456788999999997664434555555543222 222233321 125777788899997543
No 112
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.57 E-value=4.2e-07 Score=78.17 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=71.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCCC-C-------CcccccChhhhhcCCcEEEEeccCChhhhhc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRPS-V-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~l 147 (223)
++|+|||+|+||+.+++.+...| .+|.+++++.... . ......+..++++++|+|++++| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998877 6788888764221 1 11224577788999999999998 3334444
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 148 INKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
+ .+....++++..+|.+.-| +..+.|.+.+..
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 3 3343456778899998887 666678777643
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.57 E-value=3e-07 Score=75.37 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=63.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------CcccccChhhhhcCCcEEEEeccCChhhhhccCHH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V-------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
++++|+|.|+||..+|+++...|++|.+-++..... . ......+.++..+.+|+|++++|+... ..+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 689999999999999999999999998875544332 1 112345778899999999999996532 222 245
Q ss_pred HHhcCCCCcEEEEcCCC
Q 035615 152 VMAELGKGGMIINVGRG 168 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg 168 (223)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555555 8899988764
No 114
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.52 E-value=7.7e-07 Score=63.09 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=55.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhC-CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAF-GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
..+++++++|+|.|.+|+.+++.+... +.+|.+++| |+++.+.+. .+.+.++..
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence 347899999999999999999999998 567888987 999998873 334445567
Q ss_pred hcCCCCcEEEEcC
Q 035615 154 AELGKGGMIINVG 166 (223)
Q Consensus 154 ~~mk~ga~lIN~a 166 (223)
..++++.++++++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 7889999999874
No 115
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.46 E-value=5.8e-07 Score=81.61 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=71.8
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Cc--ccccChhhhhcCCcEEEEeccCChhhhh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LF--PYCANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~--~~~~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
.+.|++++|+|.|.||+.+++.|...| .+|++++|+..... +. ....++.+.+..+|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 377999999999999999999999999 67999999875422 11 122456778899999999876 3466
Q ss_pred ccCHHHHhcCC----CCcEEEEcCCCcccCH
Q 035615 147 IINKDVMAELG----KGGMIINVGRGALIDE 173 (223)
Q Consensus 147 li~~~~l~~mk----~ga~lIN~arg~~vd~ 173 (223)
+++++.++.+. ...++||.+...=+|.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 78888877652 2458999986554554
No 116
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.45 E-value=4.6e-07 Score=75.20 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=63.0
Q ss_pred CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------Cc---ccccChhhhhcCCcEEEEeccCCh
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LF---PYCANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDiv~~~~p~t~ 142 (223)
++|+||| .|+||+.+++.|...|.+|.+++|+++... +. ....+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 999999999999999999999998764321 10 11235677889999999999943
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGALI 171 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~~v 171 (223)
....++ ++.-..++ +.++|++.-|--.
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 333333 22223344 5799999877443
No 117
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.44 E-value=1e-06 Score=69.77 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=58.3
Q ss_pred cccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+++||++.|||-+ .+|+.++..|...|+.|...+... .++++.+++||+|+.+++ ..++|..+.
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~~- 97 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKADW- 97 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GGG-
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----ccccccccc-
Confidence 46999999999997 499999999999999999876543 478899999999999986 355676654
Q ss_pred hcCCCCcEEEEcCCCcc
Q 035615 154 AELGKGGMIINVGRGAL 170 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~ 170 (223)
+|+|+++||++.-..
T Consensus 98 --ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 98 --IKPGAVVIDVGINYV 112 (160)
T ss_dssp --S-TTEEEEE--CEEE
T ss_pred --ccCCcEEEecCCccc
Confidence 599999999987665
No 118
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.42 E-value=6.2e-07 Score=76.68 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=69.7
Q ss_pred CEEEEEecChHHHHHHHHHHhC--CCEE-EEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF--GFII-SYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|||||+|.||+.+++.+... ++++ .++|+++.... +...+.++++++.++|+|+.|.|.... ..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~---- 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EE---- 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HH----
Confidence 4899999999999999998765 5664 46888764322 223467899998999999999873221 11
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615 151 DVMAELGKGGMIINVGRGALIDE---KEMLQFLVQGDIN 186 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~---~al~~aL~~~~i~ 186 (223)
-....++.|.-++..+.|.+.|. +.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 12223455666677788887764 4566666665543
No 119
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.40 E-value=3.6e-06 Score=65.23 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=67.4
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|+|- ...|+.++..|...|++|...++.. .++++.+++||+|+.+++.. ++|+.++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 35689999999996 6789999999999999999887543 37889999999999998733 5687766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+|+|+++||++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 58999999999766
No 120
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.39 E-value=4.4e-07 Score=73.62 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=75.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------------CcccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------------LFPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------------~~~~~~~l~el~~~aDiv 134 (223)
|+|+|||+|.+|..+|..+...|++|+++|.+++... ......+.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 6899999999999999999999999999997754210 011235677889999999
Q ss_pred EEeccCChhhhhcc--------CHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCceEEEee-CCCCCCCCCC---
Q 035615 135 VVCCALTEQTHHII--------NKDVMAELGKGGMIINVGRGALIDEKEML-QFLVQGDINGVGLD-VFENDPNVPK--- 201 (223)
Q Consensus 135 ~~~~p~t~~t~~li--------~~~~l~~mk~ga~lIN~arg~~vd~~al~-~aL~~~~i~~a~lD-V~~~EP~~~~--- 201 (223)
++|+|......+.. -+...+.++++.++|.-|.-.+=-.+.+. ..|++..-...-++ +|.+|=+.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 99998322212221 13566678999999999998886666433 44544221100111 2556655443
Q ss_pred -CCCCCCceEE
Q 035615 202 -EPLRLDNIVL 211 (223)
Q Consensus 202 -~l~~~~nv~~ 211 (223)
.+...|+|++
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 4666677764
No 121
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=8.2e-07 Score=75.56 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=67.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCC---CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG---FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|+|||+|.||+.+++.+...| .+|.+++|+++... +.....+.++++.++|+|++++|.. ....++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence 58999999999999999999888 68999999864322 2233456778889999999999832 3444332
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 151 DVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
+....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46788776654 5566666654
No 122
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.39 E-value=1.7e-06 Score=73.66 Aligned_cols=97 Identities=21% Similarity=0.417 Sum_probs=65.4
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC----EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF----IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~ 154 (223)
.++|+|||+|+||+++++.+...+. ++++++|+.... ......+..++++++|+|++++| ...+..++. +...
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~ 79 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP 79 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence 4789999999999999999987662 488888865442 22334567778889999999987 334555553 3333
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 155 ELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
.++++ .+|.+.-|- +.+.+.+.+.
T Consensus 80 ~l~~~-~iIS~~aGi--~~~~l~~~~~ 103 (260)
T PTZ00431 80 YLGSK-LLISICGGL--NLKTLEEMVG 103 (260)
T ss_pred hccCC-EEEEEeCCc--cHHHHHHHcC
Confidence 45544 455555443 3555555553
No 123
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.39 E-value=8.5e-07 Score=76.12 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=68.8
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
-|.||||+|||||+-|++=|..|+..|.+|++--|..... ...-...+.+|+.+++|+|.+.+|...+ ..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH
Confidence 4899999999999999999999999999987654444331 1222356899999999999999995533 445566
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 035615 151 DVMAELGKGGMIINVGRG 168 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg 168 (223)
+.-..||+|+.| -.+.|
T Consensus 94 ~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 94 EIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred HhhhhhcCCceE-Eeccc
Confidence 777888988844 34443
No 124
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=2.6e-06 Score=73.31 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=64.7
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||.|. +|+.+|..|...|+.|..+.+.. .++.+.+++||+|+.+++- .+++..+
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~----p~~v~~~- 219 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGK----PGFIPGE- 219 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCC----cccccHH-
Confidence 3478999999999999 99999999999999999886542 4689999999999999952 2356664
Q ss_pred HhcCCCCcEEEEcC
Q 035615 153 MAELGKGGMIINVG 166 (223)
Q Consensus 153 l~~mk~ga~lIN~a 166 (223)
.+|+|+++||+|
T Consensus 220 --~vk~gavVIDvG 231 (285)
T PRK10792 220 --WIKPGAIVIDVG 231 (285)
T ss_pred --HcCCCcEEEEcc
Confidence 468999999999
No 125
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=2.6e-06 Score=73.53 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|+|.|. .|++++..|...|++|..+++. ..++.+.++++|+|+.+++ .+ +.++.+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-KP---ELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-CC---CcCCHHH
Confidence 4578999999999998 9999999999999999988862 2467888899999999996 22 2577654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+|+|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 69999999998543
No 126
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.34 E-value=5.8e-06 Score=69.10 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=86.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCE---EEEEcCCC----CCCC-----------Cc--ccc-cChhhhhcCCcE
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI---ISYNSRRK----RPSV-----------LF--PYC-ANVYDLAVNSDV 133 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~el~~~aDi 133 (223)
.+++++++.|+|.|.+|+.+++.|...|++ ++.+||+. .... .. ... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 458899999999999999999999999985 88999983 2210 00 011 257678889999
Q ss_pred EEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEeeCCCCCCCCCCCCCCCCceEEc
Q 035615 134 LVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD-INGVGLDVFENDPNVPKEPLRLDNIVLL 212 (223)
Q Consensus 134 v~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~-i~~a~lDV~~~EP~~~~~l~~~~nv~~T 212 (223)
|+.+.| .++++++.++.|+++.++...+.- ..|.-+.++.+.|- +..-+. +. -..+..|+++-
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~----~~~Q~nn~~~f 164 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD----FPNQVNNVLGF 164 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC----Cccccceeeec
Confidence 999876 567888999999999988888833 24444444444433 232221 11 23356788887
Q ss_pred cCCC
Q 035615 213 PCQN 216 (223)
Q Consensus 213 PH~a 216 (223)
|=++
T Consensus 165 Pg~~ 168 (226)
T cd05311 165 PGIF 168 (226)
T ss_pred chhh
Confidence 7554
No 127
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=2.8e-06 Score=71.28 Aligned_cols=101 Identities=12% Similarity=0.186 Sum_probs=67.5
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCC---CE-EEEEcCC-CCCCC------CcccccChhhhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFG---FI-ISYNSRR-KRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~-~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
+.++|+|||.|+||+.+++.+...| .+ ++.++|+ ++... +.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 4678999999999999999987765 33 6677764 22211 2333567888999999999999933 3333
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
++ ++.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 22222334 5689998766 4555666666543
No 128
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.33 E-value=2.2e-06 Score=75.44 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=72.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcc-----------------cccChhhhhcCCcEEEEec
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFP-----------------YCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~el~~~aDiv~~~~ 138 (223)
++|+|||.|.||..+|..|...|++|.+++|++... .+.. ...+. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999999864211 0110 12233 5678999999999
Q ss_pred cCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 139 ALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 139 p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
|.. +....+ ++..+.++++.++|.+..| +...+.+.+.+...++.
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 844 445544 4456667888999888654 44456677777665543
No 129
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.32 E-value=2.3e-06 Score=73.61 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||++.|||-| .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++ ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG----~p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVG----KPDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 347899999999999 999999999999999998874322 357899999999999996 345677776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|-..
T Consensus 219 v---k~GavVIDvGi~~ 232 (285)
T PRK14191 219 V---KKGAVVVDIGINR 232 (285)
T ss_pred c---CCCcEEEEeeccc
Confidence 5 9999999999644
No 130
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.32 E-value=5e-07 Score=71.99 Aligned_cols=92 Identities=11% Similarity=0.207 Sum_probs=66.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----C--------------------------cccccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----L--------------------------FPYCAN 123 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~--------------------------~~~~~~ 123 (223)
..+...+|.|+|.|+.|+..++.++++|++|..+|..+.... . ......
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 457789999999999999999999999999998886643210 0 001234
Q ss_pred hhhhhcCCcEEEEec-cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 124 VYDLAVNSDVLVVCC-ALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 124 l~el~~~aDiv~~~~-p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
+.+.++.+|+|+.++ -..+..-.+++++.++.||++.+++++|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 677889999998654 3345566789999999999999999986
No 131
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.32 E-value=6.7e-06 Score=66.83 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=66.4
Q ss_pred CccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCC-----C-Ccccc--cC----hhhhhcCCcEEEEecc
Q 035615 73 LGFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPS-----V-LFPYC--AN----VYDLAVNSDVLVVCCA 139 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~-~~~~~--~~----l~el~~~aDiv~~~~p 139 (223)
.+.+++||++.|||-+ .+|+.+|..|...|+.|+.++.+.-.. . ..... .+ +.+.+++||+|+.+++
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 3568999999999975 579999999999999999886322110 0 00011 13 7789999999999997
Q ss_pred CChhhhhc-cCHHHHhcCCCCcEEEEcCCCc
Q 035615 140 LTEQTHHI-INKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 140 ~t~~t~~l-i~~~~l~~mk~ga~lIN~arg~ 169 (223)
..++ +..+++ |+|+++||+|--.
T Consensus 136 ----~~~~~i~~d~i---k~GavVIDVGi~~ 159 (197)
T cd01079 136 ----SPNYKVPTELL---KDGAICINFASIK 159 (197)
T ss_pred ----CCCCccCHHHc---CCCcEEEEcCCCc
Confidence 3445 777664 8999999998443
No 132
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=2e-06 Score=73.73 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=67.4
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++|+++.|+|.+ ..|+.+|..+...|++|..+.+.. .++.+.+++||+|+.+++. .+++.+++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk----~~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGK----AGFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence 347999999999998 999999999999999998776432 4789999999999999962 26788877
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|-..
T Consensus 214 v---k~GavVIDVgi~~ 227 (279)
T PRK14178 214 V---KPGATVIDVGINQ 227 (279)
T ss_pred c---CCCcEEEEeeccc
Confidence 4 9999999999443
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.30 E-value=1.3e-06 Score=76.32 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=65.6
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC------Ccc--cccChhhhhcCCcEEEEeccCChhhhhc
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV------LFP--YCANVYDLAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~el~~~aDiv~~~~p~t~~t~~l 147 (223)
+.+++|+|||.|.||+.+++.++..| .+|.+++|++.+.. +.. ...++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 46889999865431 111 123466778899999999984432 222
Q ss_pred cCHHHHhcC-CCCcEEEEcCCCcccC
Q 035615 148 INKDVMAEL-GKGGMIINVGRGALID 172 (223)
Q Consensus 148 i~~~~l~~m-k~ga~lIN~arg~~vd 172 (223)
+ +..++.. +++.++||++...-+|
T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence 2 3333332 3578999999644344
No 134
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=3.3e-06 Score=72.72 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=65.2
Q ss_pred ccccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||++.|||.|. +|+.+|..|...|+.|..+.... .++.+..++||+|++++.- -+++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 3468999999999999 99999999999999998887432 3688999999999998752 2467666
Q ss_pred HhcCCCCcEEEEcCC
Q 035615 153 MAELGKGGMIINVGR 167 (223)
Q Consensus 153 l~~mk~ga~lIN~ar 167 (223)
.+|+|+++||+|-
T Consensus 225 --~vk~gavVIDvGi 237 (287)
T PRK14176 225 --MVKEGAVIFDVGI 237 (287)
T ss_pred --HcCCCcEEEEecc
Confidence 4689999999985
No 135
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.30 E-value=1.6e-06 Score=80.17 Aligned_cols=90 Identities=13% Similarity=0.246 Sum_probs=68.3
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc-----------------ccC----------
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY-----------------CAN---------- 123 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------~~~---------- 123 (223)
.+.+.++.|+|.|.+|...++.++.+|.+|.+++++....+ +... ..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 35678999999999999999999999999999987764321 1110 001
Q ss_pred hhhhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 124 VYDLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 124 l~el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
+.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++||++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 445678899998877 3222 23578999999999999999987
No 136
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.29 E-value=5.4e-06 Score=71.49 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-----------ccccChhhhhcCCcEEEEeccCChh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-----------PYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-----------~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
++|+|||.|.||..+|..|...|.+|..++|+++..+ +. ....+.+++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 4799999999999999999999999999988543321 11 112345554 8899999999843 4
Q ss_pred hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+..++ +...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 44444 3344556677888888777 33356666666555554
No 137
>PLN00203 glutamyl-tRNA reductase
Probab=98.29 E-value=9.7e-07 Score=82.04 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=71.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------Cc----ccccChhhhhcCCcEEEEeccCChh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------LF----PYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+..... +. ....++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 3779999999999999999999999997 6999999865432 11 112456678899999999876 4
Q ss_pred hhhccCHHHHhcCCC-------CcEEEEcCCCcccC
Q 035615 144 THHIINKDVMAELGK-------GGMIINVGRGALID 172 (223)
Q Consensus 144 t~~li~~~~l~~mk~-------ga~lIN~arg~~vd 172 (223)
...+|.++.++.+++ ..+|||++=..=||
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 466888888887643 24788888554333
No 138
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.29 E-value=4.3e-06 Score=74.02 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCCC----------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615 91 GSEVLNRLQAFGFIISYNSRRKRPS----------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG 160 (223)
Q Consensus 91 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga 160 (223)
|..+|..|...|++|++|||+.... .+.....+..+++++||+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 7899999999999999999876521 133345677888999999999999665477776 46777889999
Q ss_pred EEEEcCCCcccCH-HHHHHHHH
Q 035615 161 MIINVGRGALIDE-KEMLQFLV 181 (223)
Q Consensus 161 ~lIN~arg~~vd~-~al~~aL~ 181 (223)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999987655 56666664
No 139
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.29 E-value=1.3e-06 Score=79.39 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=69.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
.+.+++|+|+|.|.||+.+++.|...|+ +|++++|++.... + .....++.+.+..+|+|+.++|. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999998 7899999865422 1 11124556778899999999863 355
Q ss_pred ccCHHHHhcC-----CCCcEEEEcCCCcccC
Q 035615 147 IINKDVMAEL-----GKGGMIINVGRGALID 172 (223)
Q Consensus 147 li~~~~l~~m-----k~ga~lIN~arg~~vd 172 (223)
+++.+.++.+ +.+.++||++-..=+|
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence 6777777654 2457899988544333
No 140
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.28 E-value=2.9e-06 Score=73.32 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=72.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----CCc-------------ccccChhhhhcCCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----VLF-------------PYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-------------~~~~~l~el~~~aDiv~~~~p~t 141 (223)
++|+|||.|.||..+|..|...|.+|..++| .+.. .+. ....+.++..+.+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999988 3211 010 01234556668999999999843
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
++..++ ++....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 444443 3344456778888887666 44466777777665544
No 141
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.28 E-value=1.4e-06 Score=70.28 Aligned_cols=109 Identities=9% Similarity=0.195 Sum_probs=72.2
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVNS 131 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~a 131 (223)
+|+|||.|.||+.+|..+...|++|..||+++.... + .....+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998865321 0 11246788888 99
Q ss_pred cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCC
Q 035615 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVF 193 (223)
Q Consensus 132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~ 193 (223)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|.+.+.. .-+..++--|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence 9999999987776665556666677899987754333 445556666542 2233455555
No 142
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.25 E-value=1.8e-06 Score=75.30 Aligned_cols=104 Identities=18% Similarity=0.293 Sum_probs=78.6
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccChhhhhc-CCcEEEEeccCChhhhhccCHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS----VLFPYCANVYDLAV-NSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
.-++|||||+|+||+-.|+.+...|+.|+..+|+.-.. -+...+..+.++++ .+|+|++|+.. ..++.++----
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatyp 129 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYP 129 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcC
Confidence 35689999999999999999999999999999986322 14445677777764 79999999852 23444443223
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 153 MAELGKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
++++|.|++++++-.-+.-..+++.+-|-+
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPk 159 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPK 159 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCcc
Confidence 556899999999988887777777777754
No 143
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.25 E-value=9.2e-06 Score=74.90 Aligned_cols=130 Identities=7% Similarity=0.125 Sum_probs=88.3
Q ss_pred CEEEEEecChHHHHHHHHHHhC--CCEEEEEcCCCCCCC------------C------------cccccChhhhhcCCcE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF--GFIISYNSRRKRPSV------------L------------FPYCANVYDLAVNSDV 133 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~el~~~aDi 133 (223)
++|+|||+|.+|..+|..|... |++|+++|.++.... + .....+.++.++.||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999866 688999987654311 0 1123456677899999
Q ss_pred EEEeccCChhh------------hhcc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee-CCCCCCC
Q 035615 134 LVVCCALTEQT------------HHII--NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD-VFENDPN 198 (223)
Q Consensus 134 v~~~~p~t~~t------------~~li--~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~ 198 (223)
+++|+| ||.. ..+. -+..-+.++++.++|.-|.-.+=-.+.+.+.|.+.. .|.-.. +|.+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999996 2221 1222 134566679999999998877766677777777531 111111 3567766
Q ss_pred CCC----CCCCCCceEE
Q 035615 199 VPK----EPLRLDNIVL 211 (223)
Q Consensus 199 ~~~----~l~~~~nv~~ 211 (223)
.+. .+...|+|++
T Consensus 160 ~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCCcccccCCCCEEEE
Confidence 543 5778888874
No 144
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.24 E-value=2.2e-06 Score=74.76 Aligned_cols=95 Identities=13% Similarity=0.256 Sum_probs=71.5
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC-------------CC------CcccccChhhhhcCCcEEEEeccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP-------------SV------LFPYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~------~~~~~~~l~el~~~aDiv~~~~p~ 140 (223)
++|+|+|.|..|.++|+.|...|.+|..|.|.++. .. ......++.++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 68999999999999999999999999999875321 11 12345789999999999999999
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEM 176 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al 176 (223)
+...+.++. +.-..++++..+|+++.|=-.+...+
T Consensus 81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l 115 (329)
T COG0240 81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPETGRL 115 (329)
T ss_pred hHHHHHHHH-HHhhhccCCCeEEEEeccccCCCcch
Confidence 444555442 23346689999999998866554333
No 145
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1e-05 Score=71.90 Aligned_cols=117 Identities=16% Similarity=0.259 Sum_probs=95.5
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhh---hcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDL---AVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDiv~~~~p~t~~t~ 145 (223)
...||+||+|-||+.+|......|++|.+|+|+..+.+ ....+.+++|+ ++.-.-|++.+-.....+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 35699999999999999999999999999999986532 22334567765 456677777775443234
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC
Q 035615 146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E 196 (223)
..| ++++..|.+|-++|+-+...--|...-.++|.+..|...+.-|...|
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGE 132 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGE 132 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccc
Confidence 445 56888999999999999999999999999999999999999998887
No 146
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.24 E-value=2.8e-06 Score=72.51 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=71.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCC----CEEEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG----FIISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
++|||||+|+||++++..+...| .+|++.+|+.+... +.....+..++..++|+|++++. |+. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence 58999999999999999999888 47899998876543 22225667789999999999995 322 1
Q ss_pred HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 035615 150 KDVMAELG---KGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 150 ~~~l~~mk---~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
.+.++.+| ++.++|.++-| +..+.|.+.+.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 34555555 68899999877 45667777775
No 147
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=6.9e-06 Score=70.50 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=65.6
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+..++||+|+++++ ..+++..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvG----kp~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVG----KPNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecC----cccccCHHH
Confidence 347899999999998 899999999999999998775322 368899999999999996 345677776
Q ss_pred HhcCCCCcEEEEcCCC
Q 035615 153 MAELGKGGMIINVGRG 168 (223)
Q Consensus 153 l~~mk~ga~lIN~arg 168 (223)
+ |+|+++||+|--
T Consensus 219 v---k~gavvIDvGin 231 (281)
T PRK14183 219 V---KEGAIVIDIGIN 231 (281)
T ss_pred c---CCCcEEEEeecc
Confidence 4 899999999943
No 148
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.20 E-value=7.5e-06 Score=72.49 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=65.9
Q ss_pred EEEEEecChHHHHHHHHHHhCC--------CEEEEEcCCC-----C----------C---CCC------cccccChhhhh
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFG--------FIISYNSRRK-----R----------P---SVL------FPYCANVYDLA 128 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~-----~----------~---~~~------~~~~~~l~el~ 128 (223)
+|+|||.|++|.++|..+...| .+|..|.|.. . . ..+ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998767 8999997732 0 0 011 12346788999
Q ss_pred cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615 129 VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALID 172 (223)
Q Consensus 129 ~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd 172 (223)
+.||+|++++| +...+.++ .+.-..++++..+|+++.|=-.+
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999 33444444 34445678889999999885443
No 149
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.9e-06 Score=74.27 Aligned_cols=90 Identities=10% Similarity=0.163 Sum_probs=71.2
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccc------cccChhhhhcCCcEEEEeccC-Chh
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFP------YCANVYDLAVNSDVLVVCCAL-TEQ 143 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~el~~~aDiv~~~~p~-t~~ 143 (223)
+...+|.|||.|-+|..-||.+.++|.+|...|++..+.. +.+ ...++++.+.++|+|+-.+=- ...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 5667899999999999999999999999999988855432 111 134678899999999877621 223
Q ss_pred hhhccCHHHHhcCCCCcEEEEcC
Q 035615 144 THHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~a 166 (223)
.-.++.++.+++||||+++||++
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CceehhHHHHHhcCCCcEEEEEE
Confidence 44577889999999999999986
No 150
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=1.6e-05 Score=68.32 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=66.4
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+..++||+|+.+++ ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~~~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATG----LAKFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 347999999999975 679999999999999998875432 368899999999999997 345687766
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 035615 153 MAELGKGGMIINVGRGAL 170 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~ 170 (223)
+ |+|+++||+|--.+
T Consensus 219 v---k~GavVIDvGin~~ 233 (284)
T PRK14170 219 I---KPGAIVIDVGMDRD 233 (284)
T ss_pred c---CCCCEEEEccCccc
Confidence 4 89999999996553
No 151
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.16 E-value=4.9e-06 Score=72.85 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHh-CC-CEEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQA-FG-FIISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++++.. + .....+.++.+++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 47899999999999999986553 45 57999999876532 1 222467888999999998777743
Q ss_pred hhccCHHHHhcCCCCcEEEEcCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..++..+ .+++|+.+.-++.
T Consensus 201 ~pvl~~~---~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGE---WLKPGTHLDLVGN 220 (314)
T ss_pred CCEecHH---HcCCCCEEEeeCC
Confidence 5667654 4689985444443
No 152
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=1.5e-05 Score=68.69 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=67.5
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.+++ ..++|+.++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 34689999999996 678999999999999999887532 2478899999999999996 344788877
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 035615 153 MAELGKGGMIINVGRGAL 170 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~ 170 (223)
+ |+|+++||+|.-.+
T Consensus 220 i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 220 V---KEGAVVIDVGVNRL 234 (284)
T ss_pred c---CCCCEEEEeecccc
Confidence 5 89999999997664
No 153
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.14 E-value=1.1e-05 Score=71.95 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCEEEEEecChHHHHHHHHHHhCC-------CEEEEEcCCCCC------------------CCC------cccccChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFG-------FIISYNSRRKRP------------------SVL------FPYCANVYDL 127 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~el 127 (223)
.++|+|||.|.+|.++|..+...| .+|..|.|++.. ..+ .....+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999998665 789888777631 001 1224678889
Q ss_pred hcCCcEEEEeccCChhhhhccCHHHHh--cCCCCcEEEEcCCCcccCH
Q 035615 128 AVNSDVLVVCCALTEQTHHIINKDVMA--ELGKGGMIINVGRGALIDE 173 (223)
Q Consensus 128 ~~~aDiv~~~~p~t~~t~~li~~~~l~--~mk~ga~lIN~arg~~vd~ 173 (223)
++.+|+|++++| +...+.++. +.-. .+++++++|+++-|=-.+.
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLS-QIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHH-HhccccccCCCCEEEEEeCCcccCC
Confidence 999999999999 334444442 2223 4566789999988754443
No 154
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=2.1e-05 Score=67.77 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=64.3
Q ss_pred cccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+++||++.|||-+ .+|+.++..|...|+.|..+.... .++.+..++||+|+.++. -.+++..+++
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvG----kp~~i~~~~v 221 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIG----SPLKLTAEYF 221 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CCCccCHHHc
Confidence 36899999999974 679999999999999998776432 468899999999999996 2357887764
Q ss_pred hcCCCCcEEEEcCC
Q 035615 154 AELGKGGMIINVGR 167 (223)
Q Consensus 154 ~~mk~ga~lIN~ar 167 (223)
|+|+++||+|-
T Consensus 222 ---k~GavVIDvGi 232 (288)
T PRK14171 222 ---NPESIVIDVGI 232 (288)
T ss_pred ---CCCCEEEEeec
Confidence 89999999983
No 155
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=1.6e-05 Score=68.45 Aligned_cols=79 Identities=15% Similarity=0.314 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||++.|||- ..+|+.++..|...|+.|+.++... .++.+..++||+|+.+++ ..+++..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvG----k~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVG----KPEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence 34789999999996 5789999999999999999886432 368899999999999986 345687766
Q ss_pred HhcCCCCcEEEEcCCC
Q 035615 153 MAELGKGGMIINVGRG 168 (223)
Q Consensus 153 l~~mk~ga~lIN~arg 168 (223)
.|+|+++||+|--
T Consensus 221 ---ik~gavVIDvGin 233 (284)
T PRK14177 221 ---ISEGAVLLDAGYN 233 (284)
T ss_pred ---cCCCCEEEEecCc
Confidence 4899999999853
No 156
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=2.6e-05 Score=69.43 Aligned_cols=128 Identities=16% Similarity=0.287 Sum_probs=88.5
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------------C-cccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------------------------L-FPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDiv 134 (223)
.+|||||+|-||-.+|..+...|++|+++|.+++..+ + .....+.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 7999999999999999999999999999998765321 0 11123333 35599999
Q ss_pred EEeccCChhhh-------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEeeC---CCCCCCCC
Q 035615 135 VVCCALTEQTH-------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG--DINGVGLDV---FENDPNVP 200 (223)
Q Consensus 135 ~~~~p~t~~t~-------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~--~i~~a~lDV---~~~EP~~~ 200 (223)
++|+| ||-+. .+.+ +..-+.||+|.++|==|.-..=-.+.++.-|.+. .+. ..-|. |.+|-..|
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99998 44322 2221 3456678999999988888777778887776653 343 33454 56665433
Q ss_pred C----CCCCCCceE
Q 035615 201 K----EPLRLDNIV 210 (223)
Q Consensus 201 ~----~l~~~~nv~ 210 (223)
. .+.+.|+||
T Consensus 167 G~~~~el~~~~kVI 180 (436)
T COG0677 167 GNVLKELVNNPKVI 180 (436)
T ss_pred CchhhhhhcCCcee
Confidence 2 455667775
No 157
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.10 E-value=6.2e-06 Score=70.93 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=72.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCCCc----c-----cc-cChhhhhcCCcEEEEeccCCh
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSVLF----P-----YC-ANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~----~-----~~-~~l~el~~~aDiv~~~~p~t~ 142 (223)
+..+.++++.|+|.|.+|+++++.|...| .+|.+++|+.++.... . .. .++.+.+.++|+|+.++|..-
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 34688999999999999999999999999 5899999987543211 0 11 133466788999999998653
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
....-.+.-.+..++++.+++++.-.+. .. .|+++-++..+
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~ 238 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGPL-PT-PFLAWAKAQGA 238 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCCC-CC-HHHHHHHHCcC
Confidence 2111011112345678899999976543 33 44444444333
No 158
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=2.5e-05 Score=67.02 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=65.6
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+++||++.|||- ..+|+.++..|...|+.|..+.... .++.+..++||+|+.+++ ..++|..++
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~- 219 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIG----RPKFIDEEY- 219 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence 4689999999997 5689999999999999998886432 378899999999999997 345688776
Q ss_pred hcCCCCcEEEEcCCCc
Q 035615 154 AELGKGGMIINVGRGA 169 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~ 169 (223)
.|+|+++||+|--.
T Consensus 220 --ik~gavVIDvGin~ 233 (278)
T PRK14172 220 --VKEGAIVIDVGTSS 233 (278)
T ss_pred --cCCCcEEEEeeccc
Confidence 58999999997443
No 159
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.8e-05 Score=68.23 Aligned_cols=81 Identities=21% Similarity=0.383 Sum_probs=67.2
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.++..|...|+.|..+.... .++.+..++||+|+++++ ..++++.++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 34789999999996 5789999999999999998776432 368899999999999996 346787776
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 035615 153 MAELGKGGMIINVGRGAL 170 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~ 170 (223)
+ |+|+++||+|--.+
T Consensus 217 v---k~GavVIDVGin~~ 231 (287)
T PRK14173 217 V---RPGAVVVDVGINRV 231 (287)
T ss_pred c---CCCCEEEEccCccc
Confidence 5 89999999997664
No 160
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=2.8e-05 Score=67.35 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.++..|...|+.|..+.... .++.+..++||+|+++++ ..+++..++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAG----RPNLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 34789999999997 5679999999999999998875432 378899999999999997 235687766
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 035615 153 MAELGKGGMIINVGRGAL 170 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~~ 170 (223)
+|+|+++||+|--.+
T Consensus 220 ---ik~gavVIDvGin~~ 234 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRL 234 (297)
T ss_pred ---cCCCCEEEEeccccc
Confidence 489999999996654
No 161
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.08 E-value=1.6e-05 Score=70.04 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=66.6
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcccccChh----hhhcCCcEEEEeccCChhhhhccCH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVY----DLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~----el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++.++++.|||.|.||+.+++.|...|. +|++.+|+..... +.++. ++..++|+|+.+...|.....++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 4889999999999999999999999996 5899999875321 22222 4567999999874334444556666
Q ss_pred HHHhcCCCCcEEEEcCCCcccC
Q 035615 151 DVMAELGKGGMIINVGRGALID 172 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd 172 (223)
+.++..++ -+|||.+=..=||
T Consensus 247 ~~~~~~~~-r~~iDLAvPRdId 267 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPRTFP 267 (338)
T ss_pred HHHhhccC-cEEEEecCCCCCc
Confidence 66655433 4889988655554
No 162
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.9e-05 Score=67.88 Aligned_cols=79 Identities=16% Similarity=0.314 Sum_probs=65.5
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+..++||+|+++++ ..++++.++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 346899999999975 679999999999999999876532 468899999999999996 345688775
Q ss_pred HhcCCCCcEEEEcCCC
Q 035615 153 MAELGKGGMIINVGRG 168 (223)
Q Consensus 153 l~~mk~ga~lIN~arg 168 (223)
.|+|+++||+|--
T Consensus 219 ---vk~GavVIDvGin 231 (282)
T PRK14166 219 ---VKEGVIVVDVGIN 231 (282)
T ss_pred ---cCCCCEEEEeccc
Confidence 4899999999843
No 163
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=2e-05 Score=67.82 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.+|..|...|+.|..+.... .++.+..++||+|+++++ ..++++.++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 34689999999997 4679999999999999998875432 368899999999999997 345688775
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+|+|+++||+|--.
T Consensus 218 ---vk~GavVIDvGin~ 231 (282)
T PRK14169 218 ---VKPGAVVIDVGISR 231 (282)
T ss_pred ---cCCCcEEEEeeccc
Confidence 58999999998544
No 164
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.05 E-value=7.7e-06 Score=71.97 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCEEEEEecChHHHHHHHHHHh-C-CCEEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-F-GFIISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~-G~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
-+++||||.|.+|+..++.+.. + ..+|.+|+|+.++.. + ...+.+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 5789999999999997776654 2 346899999876532 1 22357889999999999999874 35
Q ss_pred hccCHHHHhcCCCCcEEEEcCCC
Q 035615 146 HIINKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg 168 (223)
.++..+. +|||+.+..+|.-
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred cEecHHH---cCCCCEEEecCCC
Confidence 6776654 5999999999843
No 165
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=98.05 E-value=1.6e-05 Score=67.88 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=67.6
Q ss_pred cccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 75 FKLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.+|+|+++.|||-++ +|+.++..|...+++|.++.... .++.+..++||+|++++- -.+++..++
T Consensus 152 i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~- 217 (283)
T COG0190 152 IDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM- 217 (283)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc-
Confidence 468999999999876 59999999999999999887543 478899999999999985 356677654
Q ss_pred hcCCCCcEEEEcCCCcccC
Q 035615 154 AELGKGGMIINVGRGALID 172 (223)
Q Consensus 154 ~~mk~ga~lIN~arg~~vd 172 (223)
.|+|+++|+++--.+-+
T Consensus 218 --vk~gavVIDVGinrv~~ 234 (283)
T COG0190 218 --VKPGAVVIDVGINRVND 234 (283)
T ss_pred --ccCCCEEEecCCccccC
Confidence 58999999998655443
No 166
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.04 E-value=3e-05 Score=66.35 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=73.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhh-hcCCcEEEEeccCC--hhh
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDL-AVNSDVLVVCCALT--EQT 144 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el-~~~aDiv~~~~p~t--~~t 144 (223)
..+++++|+|.|.+|++++..+...|++|.+++|+.++.. +.....++++. ..++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 5689999999999999999999999999999998865321 11112233333 35799999999964 222
Q ss_pred hh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 145 HH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 145 ~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
.. .++ .+.++++.+++|+.-.+... .|.+..++..+.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence 11 222 34578899999998876533 477777666554
No 167
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.5e-05 Score=67.12 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=64.8
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.++..|...|++|..+.... .++.+..++||+|+++++ ..++|..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence 34789999999997 5689999999999999998886432 378889999999999997 345677765
Q ss_pred HhcCCCCcEEEEcCC
Q 035615 153 MAELGKGGMIINVGR 167 (223)
Q Consensus 153 l~~mk~ga~lIN~ar 167 (223)
.|+|+++||+|-
T Consensus 220 ---vk~gavVIDvGi 231 (282)
T PRK14180 220 ---VKEGAVVIDVGI 231 (282)
T ss_pred ---cCCCcEEEEecc
Confidence 489999999984
No 168
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.6e-05 Score=67.42 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.++.||++.|||- ..+|+.++..|...|+.|..+.... .++.+..++||+|+++++ ..+++..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 34699999999997 5689999999999999998876532 368899999999999997 345687776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|--.
T Consensus 222 i---k~gaiVIDVGin~ 235 (294)
T PRK14187 222 I---KKGAIVIDVGINS 235 (294)
T ss_pred c---CCCCEEEEecccc
Confidence 5 7999999998544
No 169
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.03 E-value=2.4e-05 Score=71.03 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=65.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C---cccccChhhhhcCCcEEEEeccCChhhh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L---FPYCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~---~~~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
.+.|+++.|||.|.||+.+++.|...|. ++++++|+..+.. + ...+.++.+.+.++|+|+.|++. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 4789999999999999999999999997 6899999865422 1 11234566788999999999863 35
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCc
Q 035615 146 HIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
.+|..+... .+..++||.+=..
T Consensus 255 ~vi~~~~~~--~~~~~~iDLavPR 276 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISIPQ 276 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCCCC
Confidence 567665543 2345778877443
No 170
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.02 E-value=1.2e-05 Score=65.24 Aligned_cols=95 Identities=13% Similarity=-0.008 Sum_probs=65.1
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------c-------ccccChhhhhcCCcEEEE
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL----------F-------PYCANVYDLAVNSDVLVV 136 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------~-------~~~~~l~el~~~aDiv~~ 136 (223)
.+++++++.|+|. |.+|+.+++.+...|.+|..++|+..+... . ....++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 4578999999995 999999999999999999999887543210 0 011233467888999998
Q ss_pred eccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCH
Q 035615 137 CCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDE 173 (223)
Q Consensus 137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~ 173 (223)
+.|....+ .+. .-...+++.+++|+.+..-++.
T Consensus 104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCCCcee--chh--hhcccCceeEEEEccCCCCCCc
Confidence 88755321 111 1113455778898887776544
No 171
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.02 E-value=1.3e-05 Score=71.02 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=63.8
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------C-C------cccccChhhhhcCCcEEEEecc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------V-L------FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~-~------~~~~~~l~el~~~aDiv~~~~p 139 (223)
++|+|||.|.+|..+|..|...| .|..|.++++.. . + .....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999988 566666543210 0 1 1124567788899999999999
Q ss_pred CChhhhhccCHHHHhcCCCCcEEEEcCCCccc
Q 035615 140 LTEQTHHIINKDVMAELGKGGMIINVGRGALI 171 (223)
Q Consensus 140 ~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v 171 (223)
+..++..+ ++....++++..+|++..|=-.
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCCcC
Confidence 44455554 3444557888889999886433
No 172
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.01 E-value=3e-05 Score=67.19 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||-+ .+|+.+|..|...|++|+.+.... .++++..++||+|+.++.- .+++..++
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 357999999999975 579999999999999999886432 3688999999999999862 36788776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|--.
T Consensus 229 v---k~gavVIDvGin~ 242 (299)
T PLN02516 229 I---KPGAAVIDVGTNA 242 (299)
T ss_pred c---CCCCEEEEeeccc
Confidence 4 8999999998544
No 173
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.00 E-value=2.9e-05 Score=68.61 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.+|..|...|+.|..+.... .++.+..++||+|+.+++ ..+++..++
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvG----kp~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVG----QPNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence 34789999999996 5679999999999999998875432 478899999999999996 345688776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|--.
T Consensus 293 v---K~GAvVIDVGIn~ 306 (364)
T PLN02616 293 I---KPGAVVIDVGINP 306 (364)
T ss_pred c---CCCCEEEeccccc
Confidence 4 8999999998544
No 174
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.5e-05 Score=66.23 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||- ..+|+.++..|...|+.|..+.... .++.+..++||+|+.+++ ..+++..++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvG----k~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIG----KAELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 34689999999997 5689999999999999998876432 368899999999999996 255788776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|--.
T Consensus 219 i---k~gaiVIDvGin~ 232 (282)
T PRK14182 219 V---KEGAVVIDVGMNR 232 (282)
T ss_pred c---CCCCEEEEeecee
Confidence 4 8999999998554
No 175
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.6e-05 Score=66.28 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHh--CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA--FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
+.+++||++.|||- ..+|+.++..|.. .++.|..+.... .++.+..++||+|+++++- .+++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------~~l~~~~k~ADIvV~AvGk----p~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------RDLAAHTRRADIIVAAAGV----AHLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------CCHHHHHHhCCEEEEecCC----cCccCH
Confidence 34789999999996 5789999999987 789998876432 4788999999999999972 357887
Q ss_pred HHHhcCCCCcEEEEcCCCcc
Q 035615 151 DVMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~ 170 (223)
++ +|+|+++||+|.-.+
T Consensus 220 ~~---ik~GavVIDvGin~~ 236 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSRA 236 (284)
T ss_pred HH---cCCCCEEEEcccccc
Confidence 76 489999999996653
No 176
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.98 E-value=3.2e-05 Score=68.00 Aligned_cols=80 Identities=14% Similarity=0.263 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
+.+++||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+..++||+|+.+++ ..+++..++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 347999999999975 579999999999999998775432 368899999999999996 345687776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 035615 153 MAELGKGGMIINVGRGA 169 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~ 169 (223)
+ |+|+++||+|--.
T Consensus 276 v---k~GavVIDVGin~ 289 (345)
T PLN02897 276 L---KPGAVVIDVGTTP 289 (345)
T ss_pred c---CCCCEEEEccccc
Confidence 4 8999999998544
No 177
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=3.2e-05 Score=67.83 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-------------CC------cccccChhhhh-cCCcEEEEecc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-------------VL------FPYCANVYDLA-VNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~el~-~~aDiv~~~~p 139 (223)
++|+|||.|.||..++..|...|.+|..|+|+++.. .+ .....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 469999999999999999999999999999864210 01 11234566665 58999999998
Q ss_pred CChhhhhccCHHHHh-cCCCCcEEEEcCCCc
Q 035615 140 LTEQTHHIINKDVMA-ELGKGGMIINVGRGA 169 (223)
Q Consensus 140 ~t~~t~~li~~~~l~-~mk~ga~lIN~arg~ 169 (223)
. ..+..++. +... .+++++.+|.+..|-
T Consensus 81 s-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 T-QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 3 34555442 3333 567777777777664
No 178
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=4.1e-05 Score=65.95 Aligned_cols=80 Identities=16% Similarity=0.315 Sum_probs=65.2
Q ss_pred ccccCCCEEEEEecC-hHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 74 GFKLGGMQVGIVRLG-NIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
+.+++||++.|||-+ .+|+.+|..|... ++.|..+.... .++.+.+++||+|+.+++ ..+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG----~p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIG----VPLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence 346999999999975 6799999999887 78888775432 368999999999999996 23578
Q ss_pred CHHHHhcCCCCcEEEEcCCCc
Q 035615 149 NKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~ 169 (223)
..+++ |+|+++||+|--.
T Consensus 215 ~~~~i---k~GavVIDvGin~ 232 (287)
T PRK14181 215 KEEMI---AEKAVIVDVGTSR 232 (287)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 87764 8999999998655
No 179
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.96 E-value=5.1e-05 Score=62.28 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=67.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC---CCCCC---------C----------------ccc-----
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR---KRPSV---------L----------------FPY----- 120 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~---~~~~~---------~----------------~~~----- 120 (223)
..|+.++|+|+|.|.+|..+|+.|...|. ++..+|++ ..... + ...
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45899999999999999999999999999 58888876 21100 0 000
Q ss_pred ----ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 121 ----CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 121 ----~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
..+++++++.+|+|+-+ ..+.+++.++..+....++...++...+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 12345678899999888 5788899988888888887766666433
No 180
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.96 E-value=2.2e-05 Score=69.08 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=60.2
Q ss_pred EEEEecChHHHHHHHHHHh-CCCEEEEE-cCCCCCC------CC------------------cccccChhhhhcCCcEEE
Q 035615 82 VGIVRLGNIGSEVLNRLQA-FGFIISYN-SRRKRPS------VL------------------FPYCANVYDLAVNSDVLV 135 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~-~G~~V~~~-~~~~~~~------~~------------------~~~~~~l~el~~~aDiv~ 135 (223)
|||+|||+||+.+++.+.. -+++++++ |..++.. .+ .....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998764 46787654 4333210 01 011346889999999999
Q ss_pred EeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
.|.| .+.+..+++.+.+|+++++|+-.--
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 8876 5577889999999999888886443
No 181
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.96 E-value=0.00012 Score=62.06 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC------C-----------------CC--CCc------ccccC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK------R-----------------PS--VLF------PYCAN 123 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~-----------------~~--~~~------~~~~~ 123 (223)
.+++|+||.|-|||++|+.+|+.|..+|++|++++.+. . .. ..+ ....+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 46899999999999999999999999999988543210 0 00 000 11123
Q ss_pred hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
.++++ ..||+++-|. +.+.|+.+..+.++ +-.+++-.+.+++-. +-.+.|.++.+.
T Consensus 114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 34443 4789888764 67889998888884 345777888888755 345778777775
No 182
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.95 E-value=1.6e-05 Score=71.72 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=70.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------C--cccccChhhhhcCCcEEEEeccCChhhhh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------L--FPYCANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
+|+++++.|||.|.||..+|+.|...|. +|++.+|+..+.. + +....++.+.+.++|+|+.++. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 3899999999999999999999999996 5889999986543 2 2334667778999999999864 3466
Q ss_pred ccCHHHHhcC-C--CCcEEEEcCCCcccCH
Q 035615 147 IINKDVMAEL-G--KGGMIINVGRGALIDE 173 (223)
Q Consensus 147 li~~~~l~~m-k--~ga~lIN~arg~~vd~ 173 (223)
++..+.+... + +.-++||++=..-|++
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 6766554443 1 2257888886554444
No 183
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.93 E-value=2.1e-05 Score=68.58 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=65.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------Cccc-ccChhhhhcCCcEEEEeccCChhh
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------LFPY-CANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
...++++|||.|.+|+..++.+.. ++. +|.+|+|++++.. +... ..+.++++.++|+|+.++|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 357899999999999999999864 665 5899999875432 1111 357889999999999998844
Q ss_pred hhccCHHHHhcCCCCcEEEEcCCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~arg 168 (223)
..+|.. .+|||+.++.+|.-
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred CceeCc----cCCCCCEEEecCCC
Confidence 567754 26999999999843
No 184
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.92 E-value=9.3e-05 Score=55.47 Aligned_cols=100 Identities=19% Similarity=0.355 Sum_probs=70.8
Q ss_pred CEEEEEe----cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615 80 MQVGIVR----LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155 (223)
Q Consensus 80 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~ 155 (223)
|+|+||| -+..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..+++ +. ..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-~~-~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-EA-AA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-HH-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-HH-HH
Confidence 6899999 799999999999999999999999887777777788999855889999999983 33444442 22 33
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 156 LGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 156 mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+..+.+++..+ ..++.+.+.+++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 45677888877 6778888888888776
No 185
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.91 E-value=6e-05 Score=65.83 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcc-------------cccChhhhhcCCcEEEEeccCCh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFP-------------YCANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~-------------~~~~l~el~~~aDiv~~~~p~t~ 142 (223)
.++|+|||.|.||..+|.+|...|++|.++.|+.... .+.. ...+..+....+|+|+++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 4689999999999999999999999999888765211 0100 0011223457899999999844
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG 189 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~ 189 (223)
++...+ +.....+++++.++...-| +-.++.+.+.+...++.++.
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 333333 2344456778888887666 44667777788766766543
No 186
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.91 E-value=2e-05 Score=73.06 Aligned_cols=92 Identities=14% Similarity=0.272 Sum_probs=67.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc-------------------cC--------
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC-------------------AN-------- 123 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~-------------------~~-------- 123 (223)
...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+ ++... .+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 35699999999999999999999999999999998765422 22100 01
Q ss_pred hhhhhcCCcEEEEeccCChh-hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 124 VYDLAVNSDVLVVCCALTEQ-THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 124 l~el~~~aDiv~~~~p~t~~-t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
+.+.++.+|+|+.+...... .-.++.++.++.||+|+++|+++=
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01123579999998853211 223556889999999999999984
No 187
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6.1e-05 Score=65.27 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
+.++.||++.|||- ..+|+.+|..|... ++.|..+.... .++.+..++||+|+.++. ..+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvG----kp~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAG----VPNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecC----CcCcc
Confidence 45799999999996 57899999999876 78888775332 368899999999999985 34568
Q ss_pred CHHHHhcCCCCcEEEEcCCCc
Q 035615 149 NKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~ 169 (223)
..+++ |+|+++||+|--.
T Consensus 223 ~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 223 KPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred CHHHc---CCCCEEEecCCCc
Confidence 77764 8999999998544
No 188
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=6.4e-05 Score=64.96 Aligned_cols=80 Identities=13% Similarity=0.295 Sum_probs=64.3
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
+.+++||++.|||- ..+|+.++..|... ++.|..+.... .++.+..++||+|+.+++ ..++|
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvG----kp~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALG----QPEFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence 34689999999997 56799999999876 68888775432 378899999999999997 34567
Q ss_pred CHHHHhcCCCCcEEEEcCCCc
Q 035615 149 NKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~ 169 (223)
..++ .|+|+++||+|--.
T Consensus 219 ~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CHHH---cCCCCEEEEecCcc
Confidence 7765 58999999998544
No 189
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.87 E-value=0.00034 Score=58.17 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=70.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEE-EcCCC----------CCC-----C-Cccc-----ccChhhhh-cCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY-NSRRK----------RPS-----V-LFPY-----CANVYDLA-VNS 131 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~----------~~~-----~-~~~~-----~~~l~el~-~~a 131 (223)
.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. +.. . .... ..+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 358899999999999999999999999997654 45443 100 0 0111 11123333 378
Q ss_pred cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
|+++-|.+ .+.|+.+....++ -.+++--+.+++-+ .-.+.|+++.+.
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99988875 4478888888886 35677778888765 345667666654
No 190
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.87 E-value=0.00043 Score=57.91 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=71.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---C--------------C----c--ccccChhhhh-cC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---V--------------L----F--PYCANVYDLA-VN 130 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~--------------~----~--~~~~~l~el~-~~ 130 (223)
.++++++|.|.|+|++|+.+++.|..+|++|+++..+.... . + + ....+.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 45889999999999999999999999999998553331100 0 0 0 0011233333 37
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
||+++-|.+ .+.++.+...+++ =.+++-.+.+.+- ....+.|+++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 888887764 5567888888887 3567777777774 4556778887776
No 191
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.87 E-value=1.1e-05 Score=59.19 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=56.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-CCcc-cccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-VLFP-YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~-~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
+++|++|.|||.|.+|..-++.|...|++|.++++..... .... ....+++.+..+|+|+.+.+. ++ +++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence 5889999999999999999999999999999999874100 1111 123345668889998877653 22 334444
Q ss_pred hcCCCCcEEEEcC
Q 035615 154 AELGKGGMIINVG 166 (223)
Q Consensus 154 ~~mk~ga~lIN~a 166 (223)
...+.-.+++|++
T Consensus 79 ~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 79 ADARARGILVNVV 91 (103)
T ss_dssp HHHHHTTSEEEET
T ss_pred HHHhhCCEEEEEC
Confidence 4455455777765
No 192
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.85 E-value=5.6e-05 Score=66.81 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=70.6
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHh-CCC-EEEEEcCCCCCCCC------cccccChhhhhcCCcEEEEeccCChhh
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA-FGF-IISYNSRRKRPSVL------FPYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~------~~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
+.++++++|.|+|. |.||+.+++.|.. .|. +++.++|+..+... .....++++.+.++|+|+.+... .
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~---~ 226 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM---P 226 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---C
Confidence 45689999999998 8999999999974 564 78888887543221 11234677899999998876532 2
Q ss_pred hh-ccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 035615 145 HH-IINKDVMAELGKGGMIINVGRGALIDEK 174 (223)
Q Consensus 145 ~~-li~~~~l~~mk~ga~lIN~arg~~vd~~ 174 (223)
.. +++.+. ++++.++||+++-.=||.+
T Consensus 227 ~~~~I~~~~---l~~~~~viDiAvPRDVd~~ 254 (340)
T PRK14982 227 KGVEIDPET---LKKPCLMIDGGYPKNLDTK 254 (340)
T ss_pred cCCcCCHHH---hCCCeEEEEecCCCCCCcc
Confidence 34 377764 4789999999999888753
No 193
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=7.5e-05 Score=64.37 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=64.3
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHh----CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA----FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
+.+++||++.|||- ..+|+.++..|.. .+++|..+.... .++.+.+++||+|+.+++ ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence 34689999999997 5679999999987 788988765432 478999999999999995 35568
Q ss_pred CHHHHhcCCCCcEEEEcCC
Q 035615 149 NKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~ar 167 (223)
..+++ |+|+++||++-
T Consensus 219 ~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 219 TADMV---KPGAVVVDVGI 234 (286)
T ss_pred CHHHc---CCCCEEEEeee
Confidence 87766 99999999983
No 194
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=8.9e-05 Score=64.25 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHh----CCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhcc
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQA----FGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li 148 (223)
+.+++||++.|||- ..+|+.++..|.. .|++|....... .++.+.+++||+|+.+++. .++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~----~~li 220 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGK----ARFI 220 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCc----cCcc
Confidence 34689999999997 4679999999876 578887765432 3688999999999999952 2678
Q ss_pred CHHHHhcCCCCcEEEEcCCCc
Q 035615 149 NKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~ 169 (223)
..+++ |+|+++||+|-..
T Consensus 221 ~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 221 TADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 88876 9999999998544
No 195
>PLN02477 glutamate dehydrogenase
Probab=97.81 E-value=0.00044 Score=62.62 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=72.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC-----CCC---------------Ccc--cccChhhh-hcC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR-----PSV---------------LFP--YCANVYDL-AVN 130 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~-----~~~---------------~~~--~~~~l~el-~~~ 130 (223)
.+++|++|.|.|+|++|+.+|+.|...|++|+++ |.+.. -.. ++. ...+.+++ ...
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~ 281 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEP 281 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecc
Confidence 4689999999999999999999999999998854 43310 000 000 11122333 347
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
||+++-|. ..+.|+++...+++ -.+++-.+.+.+ ..+ -.+.|+++.|.
T Consensus 282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 89887765 46679988888886 357888889998 433 45788888776
No 196
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=0.00011 Score=63.58 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=63.5
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhC----CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccC
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAF----GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
.+++||++.|||- ..+|+.+|..|... ++.|..+.... .++.+..++||+|+.++. --+++.
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~ 219 (297)
T PRK14167 153 VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAG----VPELID 219 (297)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccC
Confidence 4689999999997 46799999999865 78898775332 368899999999999885 344787
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q 035615 150 KDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~ 169 (223)
.++ +|+|+++||+|--.
T Consensus 220 ~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 220 GSM---LSEGATVIDVGINR 236 (297)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 765 48999999999544
No 197
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.79 E-value=6.9e-05 Score=62.03 Aligned_cols=92 Identities=25% Similarity=0.297 Sum_probs=64.2
Q ss_pred CEEEEEecChHHHHHHHHHHhC--CCE-EEEEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF--GFI-ISYNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|||||+|.||+.+.+.++.- .++ +.+||++.++.. ......+++|++++.|+++=|.. .+..+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHH---
Confidence 4799999999999999999843 465 678999877643 22335789999999999987764 2222322
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHH
Q 035615 151 DVMAELGKGGMIINVGRGALIDEKEM 176 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~~al 176 (223)
..+.||.|.-+|=+|-|.+.|+.-+
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHHH
Confidence 2333566666666777888866543
No 198
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=4.9e-05 Score=66.86 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
..++++|||.|.+|+..++.+. ..++ +|.+++|++++.. + ...+.+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4688999999999999887764 4566 5889999875432 1 123567889999999999999844
Q ss_pred hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 144 THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..++. +.+|+|+.++.++.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 45554 45699999988875
No 199
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.77 E-value=7.6e-05 Score=65.69 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC----------Cc--ccccChhhhhcCCcEEEEeccCChhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV----------LF--PYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
.++++|||.|.+|+..++.+. ..+. +|.+|+|+.++.. +. ....++++.+++||+|+.++|.+
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 579999999999999999987 4675 5889999875432 11 12467888999999999998753
Q ss_pred hhccCHHHHhcCCCCcEEEEcCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..+|..+. +|+|+.+..++.
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred CcEecHHH---cCCCcEEEeeCC
Confidence 46776654 589998887763
No 200
>PRK06046 alanine dehydrogenase; Validated
Probab=97.74 E-value=8e-05 Score=65.55 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCCE-EEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGFI-ISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~~-V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
-+++||||.|.+|+..++.+.. .+.+ |.+|+|+++... + ...+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 5789999999999999998873 4664 778999875422 1 123567888887 99999999854
Q ss_pred hhccCHHHHhcCCCCcEEEEcCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..++..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 57777665 489999888874
No 201
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.00016 Score=61.65 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCEEEEEecChHHHHHHHHHHhC---CCEE-EEEcCCCCCCC----CcccccChhhh-hcCCcEEEEeccCChhhhhccC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAF---GFII-SYNSRRKRPSV----LFPYCANVYDL-AVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~---G~~V-~~~~~~~~~~~----~~~~~~~l~el-~~~aDiv~~~~p~t~~t~~li~ 149 (223)
.++|||||+|.||+.+++.+..- ++++ .+++|.+.... ....+.+++++ ..+.|+|+=|.... ..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~---- 76 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIA---- 76 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHH----
Confidence 36899999999999999998753 3664 35666653221 23346789997 57899998887522 111
Q ss_pred HHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 035615 150 KDVMAELGKGGMIINVGRGALID---EKEMLQFLVQ 182 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~arg~~vd---~~al~~aL~~ 182 (223)
+--.+-|+.|.-++=.|-|.+.| ++.|.++.++
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 12223346677777788888887 4445554444
No 202
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.71 E-value=0.00015 Score=59.42 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=47.6
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ 158 (223)
++++|||- |.||+.+++.++..|+.|. +++||+|++|+|.. .+..+ ++.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~-----i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNY-----IESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHH-----HHHhC-
Confidence 47999997 9999999999999999985 36899999999943 33333 33333
Q ss_pred CcEEEEcCCCcc
Q 035615 159 GGMIINVGRGAL 170 (223)
Q Consensus 159 ga~lIN~arg~~ 170 (223)
.++++++.-+-
T Consensus 53 -~~v~Dv~SvK~ 63 (197)
T PRK06444 53 -NNFVEISSVKW 63 (197)
T ss_pred -CeEEeccccCH
Confidence 37889987554
No 203
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.70 E-value=0.00011 Score=62.47 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=73.7
Q ss_pred HHHHHHhCC--CEEEEEcCCCCCCC-----Cccc-ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEc
Q 035615 94 VLNRLQAFG--FIISYNSRRKRPSV-----LFPY-CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINV 165 (223)
Q Consensus 94 ~a~~l~~~G--~~V~~~~~~~~~~~-----~~~~-~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ 165 (223)
+|+.|+..| .+|+++|+++.... +... ..+-.+.++++|+|++|+|.. .+..++ ++....++++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 477788777 78999998876432 2221 122257789999999999944 445554 5566678999999999
Q ss_pred CCCcccCHHHHHHHHHcCCceEEEee-CCCCCCCC----CCCCCCCCceEEccCCC
Q 035615 166 GRGALIDEKEMLQFLVQGDINGVGLD-VFENDPNV----PKEPLRLDNIVLLPCQN 216 (223)
Q Consensus 166 arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~~----~~~l~~~~nv~~TPH~a 216 (223)
+.-+.--.+++.+.+. ......+.- .|.+|-.- ...|+.-.++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 9877655566666665 233333332 45554321 23688888999999864
No 204
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00011 Score=65.82 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC---------------CcccccChhhhhcCCcEEEEeccCChh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV---------------LFPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
++|.|||.|.||+.+|..|.+.| .+|++.||+..+.. ++.....+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999888 89999999965321 111234677899999999999985422
Q ss_pred hhhccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 144 THHIINKDVM-AELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 144 t~~li~~~~l-~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
...+ +.++.|.-.++++-.+--- .++.+..++..+
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi 117 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI 117 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence 1222 3346667777776554332 344444444443
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.69 E-value=5.4e-05 Score=66.31 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC-----------CcccccChhhhhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV-----------LFPYCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~-----------~~~~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
-++++|||.|..++.-++.+.. ++. +|.+|+|+++..+ ......+.++++++||+|+.++|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 3589999999999999988764 566 5899999875422 1223678999999999999988755322
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCcc
Q 035615 146 HIINKDVMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~~ 170 (223)
.+++.+ .+|+|+.++.++....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 677765 4689999999997544
No 206
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.68 E-value=0.00057 Score=62.48 Aligned_cols=106 Identities=9% Similarity=0.098 Sum_probs=71.9
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC-------C--------------CCCcc-----cccChhh
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR-------P--------------SVLFP-----YCANVYD 126 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~-------~--------------~~~~~-----~~~~l~e 126 (223)
+.++.|+||.|.|+|++|+.+|+.|..+|++|+++ |.+.. . ..++. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 34689999999999999999999999999999876 42110 0 00010 1123344
Q ss_pred hhc-CCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 127 LAV-NSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 127 l~~-~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
++. +||+++-|.. .+.|+.+....++ .-.+++-.+.+.+ ..+ -.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 443 6899887764 6678777766663 2357778888888 333 45677777765
No 207
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.68 E-value=0.00016 Score=66.80 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=67.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccChhhh--hcCCcEEEEeccCChhhhh
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-----PYCANVYDL--AVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el--~~~aDiv~~~~p~t~~t~~ 146 (223)
+.++++++++|+|.|.+|+++++.+...|++|.+++|+..+.... ....+++++ +.++|+|++|+|....
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 346789999999999999999999999999999998875432211 011122222 5689999999996532
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
+. ..+ . .+++++.-.+.... |.++.++..+
T Consensus 404 -~~-~~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~ 433 (477)
T PRK09310 404 -IP-KAF---P--PCVVDINTLPKHSP--YTQYARSQGS 433 (477)
T ss_pred -ch-hHH---h--hhEEeccCCCCCCH--HHHHHHHCcC
Confidence 22 222 2 27888877664433 6666666544
No 208
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.67 E-value=8.8e-05 Score=65.39 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC----------Cc--ccccChhhhhcCCcEEEEeccCChhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV----------LF--PYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
.++++|||.|.+|+..+..+.. .+. +|.+|+|++++.+ +. ..+.++++++.++|+|++++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999888874 564 6899999865432 11 12467889999999999998754
Q ss_pred hhccCHHHHhcCCCCcEEEEcC
Q 035615 145 HHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~a 166 (223)
..++..+. +++|+.+..++
T Consensus 209 ~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred CcEecHHH---cCCCceEEeeC
Confidence 46676654 57887666643
No 209
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.67 E-value=0.00011 Score=63.38 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=70.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc-------------ccccChhhhhcCCcEEEEeccCC
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF-------------PYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~-------------~~~~~l~el~~~aDiv~~~~p~t 141 (223)
.+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+.. ....++.+.++++|+|+.++|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 5788999999999999999999999998 699999986543211 01233455678899999998854
Q ss_pred hh-h-hhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 142 EQ-T-HHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 142 ~~-t-~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
-. . ...++. ..++++.+++|+.-.+. ++ .|+++-++..
T Consensus 204 m~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G 243 (284)
T PRK12549 204 MAKHPGLPLPA---ELLRPGLWVADIVYFPL-ET-ELLRAARALG 243 (284)
T ss_pred CCCCCCCCCCH---HHcCCCcEEEEeeeCCC-CC-HHHHHHHHCC
Confidence 21 1 112333 34677888888876653 33 3444444433
No 210
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.0002 Score=63.06 Aligned_cols=117 Identities=18% Similarity=0.271 Sum_probs=96.7
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhh---hcCCcEEEEeccCChhhhh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDL---AVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDiv~~~~p~t~~t~~ 146 (223)
..||+||++-||+.++-.....|+.|.+|+|+..+.+ ......|++++ ++.-..|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4689999999999999999999999999999876543 12234677776 4667788888766655666
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
+| +++...|.+|-++|+-+...--|...=.+.|....|...+.-|...|-
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE 136 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE 136 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence 66 567788999999999999999999999999999999889999988774
No 211
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.66 E-value=0.00019 Score=69.54 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=79.5
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|..+|++++... + .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998865321 0 0112345 44789
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
||+|+=++|...+.+.-+-++.-+.++++++|...+ +-+....|.+.++. .-+..++.-|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecCC
Confidence 999999999888877766667777789998886432 33455566676653 23335665553
No 212
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.66 E-value=0.00013 Score=63.94 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
-++++|+|.|..++.-++.+.. +.. +|.+|+|++++.. + .....+.+++++.||+|+.+++ .+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 5789999999999999887764 334 6899999986542 1 1124678999999999998876 446
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+|+.+. +|||+.++.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 7887765 589999999983
No 213
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.65 E-value=0.00027 Score=60.40 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=62.4
Q ss_pred CEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCCCCC-------CCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRKRPS-------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++|||||+|+||+.+++.+... ++++. ++++..... .+...+.+++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4899999999999999998865 56653 343332211 0223456788874569999999984322 1 1
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCce
Q 035615 151 DVMAELGKGGMIINVGRGALIDE---KEMLQFLVQGDIN 186 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~arg~~vd~---~al~~aL~~~~i~ 186 (223)
-....++.|.-++-.+-|.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 22233455555555555655543 4466666665543
No 214
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00022 Score=62.74 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC---------C---cccccChhhhhcCCcEEEEeccCChhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV---------L---FPYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~---~~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
-++++|||.|..++.-.+.++. ++. +|.+|+|+++..+ . +....+.+++++.||+|+.++|.+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~--- 206 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST--- 206 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC---
Confidence 5689999999999999998874 566 5899999986543 1 234678899999999999999865
Q ss_pred hhccCHHHHhcCCCCcEEEEcCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..++..+++ |||+.+..++-
T Consensus 207 ~Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 207 EPVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred CCeecHhhc---CCCcEEEecCC
Confidence 377877764 79999999984
No 215
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.64 E-value=0.00035 Score=60.88 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=79.5
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------Cc-------------ccccChhhhhc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------LF-------------PYCANVYDLAV 129 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~ 129 (223)
-++|+|||.|.||+.+|..+...|++|..+|++++... +. ....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47899999999999999999887799999998854211 00 0112222 588
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCC
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFEND 196 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~E 196 (223)
.||+|+=.+|.+-+.+.-+-++.=...||+++|- |+|+ +.-.++.++++ +.=+..++--|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence 9999999999887777655566666778998876 5544 44566777773 33344676666443
No 216
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.63 E-value=0.00081 Score=61.41 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=73.6
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEE--------EcCCCCCCC---------------------Cc--cccc
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISY--------NSRRKRPSV---------------------LF--PYCA 122 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~--------~~~~~~~~~---------------------~~--~~~~ 122 (223)
+.+|+|+||.|=|+|++|+..|+.|..+|++|++ ||+..-... .+ ....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 3468999999999999999999999999999988 553321100 00 0111
Q ss_pred Chhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeC
Q 035615 123 NVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELG--KGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDV 192 (223)
Q Consensus 123 ~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk--~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV 192 (223)
+.++++ ..||+++-|. +.+.|+.+..+.+. .-.+++--+.+ .+..+| .+.|.++.|. ++=|+
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~ 367 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGK 367 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcc
Confidence 233444 3588887665 67888888777772 23467777888 455554 3667777665 33443
No 217
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.62 E-value=0.0004 Score=52.52 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=59.4
Q ss_pred CEEEEEec-ChHHHHHHHHHHh-CCCEE-EEEcCCCCCC-------------CCcccccChhhhhcCCcEEEEeccCChh
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQA-FGFII-SYNSRRKRPS-------------VLFPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~-~G~~V-~~~~~~~~~~-------------~~~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
.+|+|+|+ |+||+.+++.+.. -|+++ .++++..... .+.....++++++.++|+++-.. +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 47999999 9999999999987 68885 4677766221 12334578999999999887665 333
Q ss_pred -hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 144 -THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 144 -t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
+...+ +.. ++.+.-+|-...|---++.+.++.+.+.
T Consensus 79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 32222 222 2335566665566644444455544443
No 218
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.61 E-value=0.00036 Score=61.26 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=70.1
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCC-CEEEEEcCCCCCCC-------------Cc--c-c-ccChhhhhcCCcEEEEec
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFG-FIISYNSRRKRPSV-------------LF--P-Y-CANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-------------~~--~-~-~~~l~el~~~aDiv~~~~ 138 (223)
+..++|+|||.|.+|..++..+...| .++..+|.+..... +. . . ..+.+ .++.||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45779999999999999999998878 68889998764321 00 0 1 23445 679999999998
Q ss_pred --cCChh-hh--------hccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 035615 139 --ALTEQ-TH--------HIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLV--QGDINGVG 189 (223)
Q Consensus 139 --p~t~~-t~--------~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~--~~~i~~a~ 189 (223)
|..+. ++ .++. .+.+....|.+++|+++.-.-+-...+.+... ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 43331 11 1110 12334456788999986544333444444332 35566555
No 219
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.59 E-value=0.00017 Score=63.50 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=57.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc------cChhhhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC------ANVYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~------~~l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
.|++|+|+|+|..|....+.++++|++|++++++.++.+ ++..+ ...+++-+.+|+++.++| ....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~-- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL-- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence 399999999999999999999999999999999987643 22211 112333334999999887 3321
Q ss_pred ccCHHHHhcCCCCcEEEEcC
Q 035615 147 IINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~a 166 (223)
...++.+|++..++-++
T Consensus 243 ---~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVG 259 (339)
T ss_pred ---HHHHHHHhcCCEEEEEC
Confidence 23444555555555444
No 220
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.58 E-value=0.00017 Score=64.74 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=66.4
Q ss_pred CCEEEEEecChHHHHHHHHHHh-C-CC-EEEEEcCCCCCCC-----------C---cccccChhhhhcCCcEEEEeccCC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-F-GF-IISYNSRRKRPSV-----------L---FPYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~-G~-~V~~~~~~~~~~~-----------~---~~~~~~l~el~~~aDiv~~~~p~t 141 (223)
-++++|||.|..++.-++.+.. + .. +|.+|+|++.+.. + +..+.+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999988876 4 24 6999999875421 1 223578999999999999998754
Q ss_pred h---hhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615 142 E---QTHHIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 142 ~---~t~~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
. ++..+|..+. +|+|+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3457787765 47999888776644
No 221
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00018 Score=63.61 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=47.3
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-c------ccc---cChhhhhcCCcEEEEe
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-F------PYC---ANVYDLAVNSDVLVVC 137 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~------~~~---~~l~el~~~aDiv~~~ 137 (223)
++||||||-|..|++++...+.+|++|++.|+.+..... . ..+ ..+.++++.||+|..-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~E 69 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYE 69 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEe
Confidence 479999999999999999999999999999987764321 0 112 3577899999999764
No 222
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.56 E-value=0.00028 Score=52.88 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=53.1
Q ss_pred EEEEEe-cChHHHHHHHHHHhC-CCEEEEE-cCCCCCCC-----C--cc--cccChh-hhh--cCCcEEEEeccCChhhh
Q 035615 81 QVGIVR-LGNIGSEVLNRLQAF-GFIISYN-SRRKRPSV-----L--FP--YCANVY-DLA--VNSDVLVVCCALTEQTH 145 (223)
Q Consensus 81 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~-----~--~~--~~~~l~-el~--~~aDiv~~~~p~t~~t~ 145 (223)
+++|+| .|.+|+.+++.+... ++++..+ ++...... . .. ...+.+ +.+ .++|+|++|+|.... .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence 589999 599999999999874 7887654 43321111 0 10 001111 222 489999999996533 3
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3221 23455789999999973
No 223
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.56 E-value=0.00015 Score=59.80 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=48.3
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc--ccChhhhhcCCcEEEEecc
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY--CANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~--~~~l~el~~~aDiv~~~~p 139 (223)
..-+|+|++|.|||.|.+|..-++.|..+|++|.++++...+.. .... -.--.+.+..+|+|+.+..
T Consensus 3 ~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 3 VFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD 78 (205)
T ss_pred eEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC
Confidence 44579999999999999999999999999999999988654221 1110 0001345678888877654
No 224
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.00064 Score=60.78 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=90.0
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------C--cccccChhhhhcCCcEE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------L--FPYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~--~~~~~~l~el~~~aDiv 134 (223)
++|.|+|.|-+|-..+..+..+|++|+.+|..+.+.+ . .....+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5899999999999999999999999999987654311 0 22346788889999999
Q ss_pred EEeccCChhhhhccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEee-CCCCCCCCCC----
Q 035615 135 VVCCALTEQTHHIIN--------KDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLD-VFENDPNVPK---- 201 (223)
Q Consensus 135 ~~~~p~t~~t~~li~--------~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lD-V~~~EP~~~~---- 201 (223)
++++|..+...+-+| ++..+.++..+++|+=|+-.+=-.+.+.+.+.+..-.. -.+ ++.+|=|...
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999985443344333 45666777779999999888777777777666554322 222 2444433321
Q ss_pred CCCCCCceEE
Q 035615 202 EPLRLDNIVL 211 (223)
Q Consensus 202 ~l~~~~nv~~ 211 (223)
.++.-+++++
T Consensus 160 D~~~PdRIVi 169 (414)
T COG1004 160 DFLYPDRIVI 169 (414)
T ss_pred hccCCCeEEE
Confidence 3444556654
No 225
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.55 E-value=0.00099 Score=57.90 Aligned_cols=110 Identities=11% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCC--CCCCCcccccChhhhhcCCcEEEEeccCChhh---h-------
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRK--RPSVLFPYCANVYDLAVNSDVLVVCCALTEQT---H------- 145 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t---~------- 145 (223)
.+++++|||-=.--..++++|.+.|++|..+.-.. ....++....+.+++++++|+|+.-+|.+.+. +
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 37899999999989999999999999987643322 22335555567788999999999988865322 1
Q ss_pred hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 146 HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
--++++.++.|+++..++ ++.+. .. +-+.++++++. .+|..+
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~--~~~~~~ 122 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK--LVELFE 122 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe--EEEEec
Confidence 113578999999998444 33332 22 34566678887 345443
No 226
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.53 E-value=0.00029 Score=61.87 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=65.8
Q ss_pred CCEEEEEecChHHHHHHHHHHhC-CCEEE-EEcCCC-CCC-C--CcccccChhhhhcCCcEEEEeccCChhhhhccCHHH
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAF-GFIIS-YNSRRK-RPS-V--LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~-~~~-~--~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~ 152 (223)
..+|||||+|+||+.+++.+... ++++. ++++++ ... . +.....+.++++.+.|+|++|.|....- +..
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~ 77 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQ 77 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHH
Confidence 36899999999999999998765 78876 468774 221 1 2222356777788999999999854221 334
Q ss_pred HhcCCCCcEEEEcCCCc--ccC-HHHHHHHHHc-CCce
Q 035615 153 MAELGKGGMIINVGRGA--LID-EKEMLQFLVQ-GDIN 186 (223)
Q Consensus 153 l~~mk~ga~lIN~arg~--~vd-~~al~~aL~~-~~i~ 186 (223)
...|+.|.-+|+..--. +-+ .+.|-++-++ |++.
T Consensus 78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 44566677777775321 123 2334444453 5665
No 227
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.53 E-value=0.00041 Score=67.20 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=78.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|..+|++++... + .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998765321 0 0112344 34789
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
||+|+=++|..-+.+.-+-++.-+.++++++|-... +-++...|.+.++. .-+..++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999887777666566667789998876432 33455666666653 22334555553
No 228
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.53 E-value=0.00026 Score=58.21 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=49.9
Q ss_pred CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-ccc-ccCh-hhhhcCCcEEEEeccCC
Q 035615 72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-FPY-CANV-YDLAVNSDVLVVCCALT 141 (223)
Q Consensus 72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~~-~~~l-~el~~~aDiv~~~~p~t 141 (223)
|..-+|+|++|.|||.|.+|...++.|...|++|.++++...+.. + ... ...+ ++.+..+|+|+.++...
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 345679999999999999999999999999999999987643210 1 100 0111 33467889888876533
No 229
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.52 E-value=0.00032 Score=68.15 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=80.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhcC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAVN 130 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 130 (223)
++|+|||.|.||..+|..+...|++|..+|++++... + .....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999998865321 0 01123444 5789
Q ss_pred CcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 131 SDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 131 aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
||+|+=++|..-+.+.-+-++.=+.++++++|.. .-+-++...|.+.++.. -+..++.-|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCCc-cceEEEeccC
Confidence 9999999998888777666777778899988763 22335566677776542 3335776664
No 230
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.52 E-value=0.0004 Score=67.24 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=79.5
Q ss_pred CEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV 129 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~ 129 (223)
++|+|||.|.||..+|..+. ..|++|..+|++++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999987 78999999998764311 0 0112344 4578
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
.||+|+=++|.+.+.+.-+-++.=+.++|+++|... .+-+....|.+.++.. -+..++.-|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~p-~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAARP-EQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCcc-cceEEEecCC
Confidence 999999999988887776666777778999988743 3345556677766432 2335666553
No 231
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.52 E-value=0.00016 Score=62.89 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=67.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccccc-c---C---hhhhhcCCcEEEEeccCChhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYC-A---N---VYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~-~---~---l~el~~~aDiv~~~~p~t~~t 144 (223)
.|+.+||+|+|.+|+.-.+.+++||++|+++|++.++.+ ++..+ . + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 799999999999999999999999999999999874332 22111 1 1 234455556665555422 2
Q ss_pred hhccCHHHHhcCCCCcEEEEcC------------------------CCcccCHHHHHHHHHcCCce
Q 035615 145 HHIINKDVMAELGKGGMIINVG------------------------RGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~a------------------------rg~~vd~~al~~aL~~~~i~ 186 (223)
++-+ ...++.||++..+|-++ =|+..|.+.+++...++.|.
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 2222 34555666666555543 24455666666666666654
No 232
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.51 E-value=0.00036 Score=60.92 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=70.5
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc---c-cccChhhhhcCCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF---P-YCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~---~-~~~~l~el~~~aDiv~~~~p~t 141 (223)
++|+|||.|.||..+|..+...|. +|+.+|....... .. . ...+.++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 8999987543211 00 1 1245666 78999999998732
Q ss_pred hh---h--------hhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--ee
Q 035615 142 EQ---T--------HHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG--LD 191 (223)
Q Consensus 142 ~~---t--------~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~--lD 191 (223)
.. + ..++. .+.+....+++++|+++.--=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 1 11221 122333457889999876554444555555 4455666664 56
No 233
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.51 E-value=0.0015 Score=59.78 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---C----------------------Cc-----ccccC
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---V----------------------LF-----PYCAN 123 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~----------------------~~-----~~~~~ 123 (223)
+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+.... . ++ ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 446999999999999999999999999999998754421110 0 00 01113
Q ss_pred hhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 124 VYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGK-GG-MIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 124 l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~-ga-~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
.++++ ..||+++-|. +.+.|+++..++++. +. +++--+.+ .+..++. +.|.++.|.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 33443 4688887665 578899988888865 34 55666666 5666655 445555554
No 234
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.48 E-value=0.00029 Score=61.40 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCC-EEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccCChhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGF-IISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~t~~t 144 (223)
-+++||||.|..|+.-++.+.. +.. +|.+|+|++.+.. + .....+.++++.+||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 5889999999999998887764 444 5899999976532 1 22356899999999999998874 4
Q ss_pred hhccCHHHHhcCCCCcEEEEcCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..+|+.+. +|||+.+.-+|.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 67787765 478887777664
No 235
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.46 E-value=0.001 Score=52.52 Aligned_cols=96 Identities=13% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCEEEEEe--cChHHHHHHHHHHhCCCEEEEEcCCCC--CC----------------CCcccccChhhhhcCCcEEEEe
Q 035615 78 GGMQVGIVR--LGNIGSEVLNRLQAFGFIISYNSRRKR--PS----------------VLFPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 78 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~el~~~aDiv~~~ 137 (223)
.|+||++|| .+++.++++..+..||+++.+..+..- +. .......++++.++.+|+|...
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 389999999999999999888887652 11 0123457899999999999876
Q ss_pred ccC----Chh-------hhhccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 035615 138 CAL----TEQ-------THHIINKDVMAELGKGGMIINVG---RGALIDE 173 (223)
Q Consensus 138 ~p~----t~~-------t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~ 173 (223)
.-- .+. ....++++.++.+|++++|..+. ||.=|+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~ 130 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSD 130 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEH
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCH
Confidence 543 110 12567999999999999999887 4544443
No 236
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.46 E-value=0.00014 Score=54.04 Aligned_cols=100 Identities=16% Similarity=0.286 Sum_probs=64.8
Q ss_pred EEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCChhhhhccC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~ 149 (223)
++||||+|.+|+.....+... ++++. ++|+++.... +...+.+++++++ +.|+|+++.|........
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-- 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-- 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence 799999999999999888766 55654 6788764332 3446789999998 799999999854332222
Q ss_pred HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 035615 150 KDVMAELGKG-GMIINVG-RGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 150 ~~~l~~mk~g-a~lIN~a-rg~~vd~~al~~aL~~~~i 185 (223)
...++ .| .+++.-- --.+-+.+.|.++.++.+.
T Consensus 80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 23333 33 3444421 1234455666666665544
No 237
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.44 E-value=0.00082 Score=56.85 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=70.3
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE--------cCCCCCCC----------C-cccc----------cChh-
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN--------SRRKRPSV----------L-FPYC----------ANVY- 125 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--------~~~~~~~~----------~-~~~~----------~~l~- 125 (223)
+++|+++.|-|+|++|+.+|+.|...|++|++. |+..-..+ . ...+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 32211000 1 1111 1221
Q ss_pred hhh-cCCcEEEEeccCChhhhhccCHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 126 DLA-VNSDVLVVCCALTEQTHHIINKDVMA-ELGKGG-MIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 126 el~-~~aDiv~~~~p~t~~t~~li~~~~l~-~mk~ga-~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+++ ..||+++-|. ..+.|+++... .+++++ +++-.+.+.+- .++.. .|+++.|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 555 5899999885 46678888888 777665 55667777765 44444 88888775
No 238
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.44 E-value=0.0007 Score=65.46 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=77.6
Q ss_pred CEEEEEecChHHHHHHHHHH-hCCCEEEEEcCCCCCCC----------------C-------------cccccChhhhhc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQ-AFGFIISYNSRRKRPSV----------------L-------------FPYCANVYDLAV 129 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~ 129 (223)
++|+|||.|.||+.+|..+. ..|++|..+|++++... + .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 58999999998864211 0 0112344 4578
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
.||+|+=++|...+.+.-+-++.-+.++++++|.... +-+....|.+.++. .-+..++.-|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecCC
Confidence 9999999999888877766666767788988876332 23445566666643 22335666553
No 239
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.38 E-value=0.00044 Score=61.41 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCEEEEEecChHHHHHHHHHH-hCCC-EEEEEcCCCCCCC---------C--cccccChhhhhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQ-AFGF-IISYNSRRKRPSV---------L--FPYCANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
-++++|||.|..++.-++.+. -+.. +|.+|+|+++... + +....+.++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 578999999999998887665 3455 5899999976532 1 223578999999999999998733 223
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+|..+. +|+|+.+.-+|.
T Consensus 208 Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred ceecHHH---cCCCcEEEecCC
Confidence 5676654 589998887763
No 240
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.36 E-value=0.0013 Score=55.87 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=45.6
Q ss_pred CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-----CcccccChhhhhcCCcEEEEecc
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p 139 (223)
.+|+|+|+ |+||+.+++.+... ++++. ++|+.++... +...+.+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 58999998 99999999998764 78865 5776654321 22345788999989999997775
No 241
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.34 E-value=0.0058 Score=55.95 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=67.6
Q ss_pred ccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEE-cCCCC----------CC--------------CCc------cccc
Q 035615 74 GFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYN-SRRKR----------PS--------------VLF------PYCA 122 (223)
Q Consensus 74 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~----------~~--------------~~~------~~~~ 122 (223)
+.+|+|+||.|=|+|++|+..|+.|..+|.+|+.+ |.+.. .. ..+ ..+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 35689999999999999999999999999998844 43310 00 000 0111
Q ss_pred Chhhhh-cCCcEEEEeccCChhhhhccCHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 123 NVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAEL-GKGG-MIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 123 ~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~m-k~ga-~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+-++++ -.||+.+-|. +.+.|+.+..+.+ +.++ +++--+.+.+-. + -.+.|+++.|.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence 222333 3688877664 5777888776655 3344 455666676644 3 34666776665
No 242
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.34 E-value=0.0002 Score=58.84 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=33.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|.+++|.|+|+|.+|..+++.|...|+ ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999998 68888766
No 243
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=97.32 E-value=0.00065 Score=57.81 Aligned_cols=97 Identities=21% Similarity=0.163 Sum_probs=67.3
Q ss_pred CccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-----------CCcccccChhhhhcCCcEEEEeccC
Q 035615 73 LGFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-----------VLFPYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~l~el~~~aDiv~~~~p~ 140 (223)
.|.+|+..|++|+|+ |.||..+|+.|.+.+.+....-|..... .+.....+++..+.+.|+++....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 578999999999996 9999999999999888765554332211 122234566665666666655442
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGRGALIDEK 174 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~ 174 (223)
+ .+-..|+.+ .+|||+++|+-++-.=+|+.
T Consensus 240 ~-~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 240 M-PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred c-CCCceechh---hccCCeEEEcCCcCcccccc
Confidence 1 234456654 46999999999998877764
No 244
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.30 E-value=0.0007 Score=57.68 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=70.8
Q ss_pred EEEEec-ChHHHHHHHHHHhCC----CEEEEEcCCCCCCCC----------c------ccccChhhhhcCCcEEEEeccC
Q 035615 82 VGIVRL-GNIGSEVLNRLQAFG----FIISYNSRRKRPSVL----------F------PYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 82 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~----------~------~~~~~l~el~~~aDiv~~~~p~ 140 (223)
|+|||. |.+|..++..+...| .++..+|...+.... . ....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 689999987654321 0 0124557889999999996521
Q ss_pred --Ch---------hhhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE-eeC
Q 035615 141 --TE---------QTHHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG-LDV 192 (223)
Q Consensus 141 --t~---------~t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~-lDV 192 (223)
.+ .+..++. .+.+.+..|.+++||.+.--=+-...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 11 1111111 123444568899999963222333344444 4567788888 775
No 245
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.28 E-value=0.0008 Score=50.51 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=51.0
Q ss_pred EEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCCC----C------cc--cc-cChhhhhcCCcEEEEeccCChhh
Q 035615 81 QVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPSV----L------FP--YC-ANVYDLAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 81 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~----~------~~--~~-~~l~el~~~aDiv~~~~p~t~~t 144 (223)
+|+||| .|.+|+.+.+.|.. ..+++. +++++..... . .. .. ....+.+..+|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 699999 99999999999986 345644 4555542211 0 00 01 1122445999999999984322
Q ss_pred hhccCHHHHhcCCCCcEEEEcCCC
Q 035615 145 HHIINKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~arg 168 (223)
.... .+. +++|..+|+.+.-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSST
T ss_pred HHHH-HHH---hhCCcEEEeCCHH
Confidence 2221 222 4788999998743
No 246
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0013 Score=59.01 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=71.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCC------------------CCC------CcccccChhhhhc-
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKR------------------PSV------LFPYCANVYDLAV- 129 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~------------------~~~------~~~~~~~l~el~~- 129 (223)
.+|+|+||.|=|+|+.|+..|+.+...|.+|+++|.+.. ... +. .+.+-++++.
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga-~~i~~~e~~~~ 281 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGA-EYITNEELLEV 281 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCc-eEccccccccc
Confidence 358999999999999999999999999999988776554 100 11 1223355553
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
.||+++=|. +.+.|+.+..+++|-. +++--+.|++- .+|--..++.|
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG 328 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG 328 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence 689886554 6788998888888865 78888888876 33333333444
No 247
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=97.25 E-value=0.0024 Score=54.14 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ 158 (223)
--++-|+|.|.+++.+++.++.+|++|.++|+.+..... ..+..++.+....| .+.+..+.+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~ 161 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPP 161 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCC
Confidence 358999999999999999999999999998866541110 11123433322211 122223456
Q ss_pred CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 159 GGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 159 ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
...+|=+.++.-.|.+.|..+|++....
T Consensus 162 ~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 162 GSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred CcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 6777777788888888888888554443
No 248
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.24 E-value=0.00028 Score=60.92 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=50.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc----------ccc---cChhhhhcCCcEEEEeccCC
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF----------PYC---ANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~----------~~~---~~l~el~~~aDiv~~~~p~t 141 (223)
.++++++.|||.|.+|++++..|...|+ +|.+++|+.++.+.. ... .++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4679999999999999999999999998 599999986543210 011 12335567899999998864
No 249
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.23 E-value=0.0011 Score=57.32 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=60.4
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCC---CCC-----------C--cc--ccc---ChhhhhcCCcE
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKR---PSV-----------L--FP--YCA---NVYDLAVNSDV 133 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~---~~~-----------~--~~--~~~---~l~el~~~aDi 133 (223)
++.++++.|+|.|.+|++++..|...|++ |.+++|+.+ +.+ . .. ... ++++.++.+|+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 46789999999999999999999999996 999999752 110 0 00 011 23345667899
Q ss_pred EEEeccCCh--hhhh-ccCHHHHhcCCCCcEEEEcCCCc
Q 035615 134 LVVCCALTE--QTHH-IINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 134 v~~~~p~t~--~t~~-li~~~~l~~mk~ga~lIN~arg~ 169 (223)
|+.++|..- .... .+. ....++++.+++++--.+
T Consensus 203 lINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P 239 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP 239 (289)
T ss_pred EEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC
Confidence 999988541 1111 110 123456777888876555
No 250
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.23 E-value=0.0036 Score=54.70 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=72.6
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---CcccccChhhhhcCCcEEEEeccC--------C
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV---LFPYCANVYDLAVNSDVLVVCCAL--------T 141 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~el~~~aDiv~~~~p~--------t 141 (223)
.+.|++|+++|= +++.++++..+..+|+++.+..|..-... ......++++.++.+|+|....=. .
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~ 232 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLL 232 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccch
Confidence 378999999996 69999999999999999998877543221 224467899999999999775310 0
Q ss_pred hh-----hhhccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 035615 142 EQ-----THHIINKDVMAELGKGGMIINVG---RGALIDEK 174 (223)
Q Consensus 142 ~~-----t~~li~~~~l~~mk~ga~lIN~a---rg~~vd~~ 174 (223)
++ -...++++.++..|++++|.-+- ||.=|+.+
T Consensus 233 ~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~ 273 (305)
T PRK00856 233 PSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD 273 (305)
T ss_pred HHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence 11 12456888999999999888765 56544443
No 251
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.21 E-value=0.0013 Score=59.65 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-----ccccChhhhhcCCcEEEEeccCChhhh--------
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF-----PYCANVYDLAVNSDVLVVCCALTEQTH-------- 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el~~~aDiv~~~~p~t~~t~-------- 145 (223)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ......+.+.+++|+++.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4689999999999999999999999999999765432210 011223344577998887765433211
Q ss_pred --hccCHHH--Hhc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 035615 146 --HIINKDV--MAE--L-GKGGMIINVGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 146 --~li~~~~--l~~--m-k~ga~lIN~arg~~vd~~al~~aL~~ 182 (223)
.++.+.. +.. + +...+=|--+.|+.--.+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 1222211 111 1 11234555556777767777777765
No 252
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.20 E-value=0.0015 Score=56.86 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=57.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------------c--ccccChhhhhcCCcEEEEeccCCh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------------F--PYCANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------------~--~~~~~l~el~~~aDiv~~~~p~t~ 142 (223)
++|+|||.|.+|+.+|..|...|. ++..+|+..+...+ . .......+.++.||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 489999999999999999998884 79999987664321 0 011122345789999999985421
Q ss_pred ---hhh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615 143 ---QTH--------HIIN--KDVMAELGKGGMIINVG 166 (223)
Q Consensus 143 ---~t~--------~li~--~~~l~~mk~ga~lIN~a 166 (223)
.++ .++. .+.+....|.+++|+++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111 1111 12344456788999987
No 253
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.18 E-value=0.0011 Score=55.37 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=59.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~-- 119 (223)
..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|...-... + . .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999999 5777764321100 0 0 0
Q ss_pred --c--ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 120 --Y--CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 120 --~--~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
. ..+++++++++|+|+.|+. +.+++..+++...+. +.-+|..+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 1234567888998888765 566777776554432 34456554
No 254
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.18 E-value=0.00053 Score=53.04 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------------c-ccChhhhhcCCcEEEEeccCCh
Q 035615 82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------------Y-CANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------------~-~~~l~el~~~aDiv~~~~p~t~ 142 (223)
|.|+|.|.||.-+|-+|+..|.+|..+.|.. ..+ +.. . ..+..+.....|+|++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999998876 211 110 0 111124577899999999744
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEe
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGL 190 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~l 190 (223)
++...+. .....+++++.++-.-.| +-.++.+.+.+...++.++..
T Consensus 79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 4444443 355556677777766666 455677777775556654443
No 255
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.17 E-value=0.00095 Score=59.10 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=55.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC--------------------------------CCcc--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS--------------------------------VLFP-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~--------------------------------~~~~-- 119 (223)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+..-.. ....
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 45899999999999999999999999998 677787653110 0000
Q ss_pred ------cccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 120 ------YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 120 ------~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
...+++++++++|+|+.++ .+.+++.+++.-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence 0134567788899888877 46677777765443
No 256
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.16 E-value=0.00082 Score=56.85 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=32.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46999999999999999999999999998 57676643
No 257
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.15 E-value=0.0022 Score=56.30 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------c-------ccccChhhhhcCCcEEEEeccC-
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------F-------PYCANVYDLAVNSDVLVVCCAL- 140 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------~-------~~~~~l~el~~~aDiv~~~~p~- 140 (223)
.+++|+|||.|.+|..+|-.+...|. ++..+|+......+ . ....+..+.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 46799999999999999999988887 78999986654321 0 0111223558999999998632
Q ss_pred -Ch-hhh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615 141 -TE-QTH--------HIIN--KDVMAELGKGGMIINVG 166 (223)
Q Consensus 141 -t~-~t~--------~li~--~~~l~~mk~ga~lIN~a 166 (223)
.+ .++ .++. .+.+....+.+++|+++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 122 1111 11222234688999987
No 258
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.14 E-value=0.00014 Score=60.47 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------------------Cc-------------cccc
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------------------LF-------------PYCA 122 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------------------~~-------------~~~~ 122 (223)
..-+.|+|||.|.||..+|+.....|+.|..+|++.+... .. ....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999998865321 00 0124
Q ss_pred ChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEeeCCCCCC
Q 035615 123 NVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMII-NVGRGALIDEKEMLQFLVQGDINGVGLDVFENDP 197 (223)
Q Consensus 123 ~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI-N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~EP 197 (223)
++.++++.+|+|+=++-.+-+.+.-+-++.=...|+.++|. |+|. +...++..+++.... .++|-.|.+-|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP 160 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP 160 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence 56667777777765553332222111122223357777665 5554 445667777776554 47888887766
No 259
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00058 Score=57.01 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=48.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC--------------cccccChhhh-hcCCcEEEEeccCCh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL--------------FPYCANVYDL-AVNSDVLVVCCALTE 142 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--------------~~~~~~l~el-~~~aDiv~~~~p~t~ 142 (223)
|++.|+|+|+.|..+|+.|...|+.|+.+++++..... .....-|.++ +.++|+++.++....
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 58999999999999999999999999999887654221 0112335555 788999999887543
No 260
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.12 E-value=0.0012 Score=52.13 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=48.5
Q ss_pred CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---C-ccc-ccCh-hhhhcCCcEEEEecc
Q 035615 71 YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---L-FPY-CANV-YDLAVNSDVLVVCCA 139 (223)
Q Consensus 71 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~-~~~-~~~l-~el~~~aDiv~~~~p 139 (223)
|+..-+|+|++|.|||.|.+|...++.|...|++|.++++...... . ... ...+ ++-+..+|+|+.++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence 3456789999999999999999999999999999998875432210 0 000 1111 123677888887765
No 261
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.11 E-value=0.0021 Score=55.91 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=63.9
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCC-------------c--c--cccChhhhhcCCcEEEEecc--
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVL-------------F--P--YCANVYDLAVNSDVLVVCCA-- 139 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~--~--~~~~l~el~~~aDiv~~~~p-- 139 (223)
++|+|||.|.+|..+|..+...|. +|..+|+..+...+ . . ...+. +.++.||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 689999999999999999987665 89999986643210 0 0 11344 45789999999863
Q ss_pred CChh---------hhhccCHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE
Q 035615 140 LTEQ---------THHIINKDV---MAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGVG 189 (223)
Q Consensus 140 ~t~~---------t~~li~~~~---l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a~ 189 (223)
..+. +..++ .+. +...-+.+++|+++...=+-...+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 2111 11222 122 222345678888854433333344332 2224566554
No 262
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.10 E-value=0.0025 Score=55.51 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=70.1
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-----C-Ccc-------c----ccChhhhhcCCcEEEEeccCCh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-----V-LFP-------Y----CANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~-~~~-------~----~~~l~el~~~aDiv~~~~p~t~ 142 (223)
++|+|+|.|.||.-+|-+|...|.+|..+.|..+.. . +.. . .....+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 579999999999999999999999999988864221 1 110 0 011112345789999998533
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVG 189 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~ 189 (223)
++...+ +.....+.+++.+|-+-.|= -.++.+.+.+...++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEE
Confidence 333333 34556677888877765553 4566677777666665443
No 263
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.0034 Score=57.45 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=78.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---------CCccc--ccChhhhhcCCcEEEEec--cCC-h
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---------VLFPY--CANVYDLAVNSDVLVVCC--ALT-E 142 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDiv~~~~--p~t-~ 142 (223)
+.+++|.|+|+|.-|.++++.|+..|++|+++|..+... ++... -....+...++|+|+..= |.+ |
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 449999999999999999999999999999999766551 11111 011125678899998862 222 2
Q ss_pred h-------hhhccCH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCceEEEeeCCCCCC
Q 035615 143 Q-------THHIINK-DVMAEL--GKGGMIINVGRGALIDEKEMLQFLVQ--------GDINGVGLDVFENDP 197 (223)
Q Consensus 143 ~-------t~~li~~-~~l~~m--k~ga~lIN~arg~~vd~~al~~aL~~--------~~i~~a~lDV~~~EP 197 (223)
. -..++.+ +++-+. +.--+-|.-+.|+.--..-+...|++ |.|...++|+.++++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 1 0112222 233332 22244555567887777777777766 677888899987744
No 264
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.08 E-value=0.0077 Score=55.33 Aligned_cols=109 Identities=13% Similarity=0.219 Sum_probs=77.8
Q ss_pred cCCCEEEEEec----ChHHHHHHHHHHhCCC--EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCH
Q 035615 77 LGGMQVGIVRL----GNIGSEVLNRLQAFGF--IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 77 l~g~~vgIiG~----G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~ 150 (223)
++-++|.|||. |++|..+.+.++..|+ +|+.+++......+...+.+++++-...|++++++|. +.+..++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~- 82 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVE- 82 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHH-
Confidence 56789999998 8899999999999888 6888888776666777788999998889999999993 34444442
Q ss_pred HHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHcCCceEE
Q 035615 151 DVMAELGKGGMII-NVGRGAL-----IDEKEMLQFLVQGDINGV 188 (223)
Q Consensus 151 ~~l~~mk~ga~lI-N~arg~~-----vd~~al~~aL~~~~i~~a 188 (223)
+..+ .+-.+++| .-+-++. ..++.|.+..+++.++-.
T Consensus 83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 3332 34344443 3222222 235778888888877633
No 265
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.06 E-value=0.0015 Score=58.44 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C---------cccccChhhhhcCCcEEEEe
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L---------FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~---------~~~~~~l~el~~~aDiv~~~ 137 (223)
.++|||||-|..|++++..++.+|++|+++|+.+.... . +.....+.++++.+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence 37899999999999999999999999999988764321 1 01112366778899988643
No 266
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.06 E-value=0.0023 Score=56.30 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=68.7
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc--c-c-ccChhhhhcCCcEEEEec
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF--P-Y-CANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~--~-~-~~~l~el~~~aDiv~~~~ 138 (223)
+..++|+|||.|.+|..+|..+...|. +++.+|.+++... +. . . ..+. +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 456899999999999999999887785 8889998776321 00 0 1 2344 5679999999976
Q ss_pred cCC--h--------------hhhhccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 035615 139 ALT--E--------------QTHHIIN--KDVMAELGKGGMIINVGRGALIDEKEMLQFLV--QGDINGVG 189 (223)
Q Consensus 139 p~t--~--------------~t~~li~--~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~--~~~i~~a~ 189 (223)
-.. + .+..++. .+.+....|.+++||++.-.=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 221 1 1111111 12233345678999998544333444444332 24566555
No 267
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.02 E-value=0.0035 Score=54.99 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=64.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHHh-------CCCEEEEEcCCCCCC--------------------C------CcccccC
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQA-------FGFIISYNSRRKRPS--------------------V------LFPYCAN 123 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~~~~~~~~--------------------~------~~~~~~~ 123 (223)
-.-++|+|||.|+.|+++|+.+.. |..+|..|-+..... + ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 446799999999999999998863 334565543222110 0 1123578
Q ss_pred hhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615 124 VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 124 l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
+.+.+.+||+++..+|.+ .+..++ ++.....|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQ-f~~~ic-~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ-FIPRIC-EQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChh-hHHHHH-HHHhcccCCCCeEEEeecce
Confidence 999999999999999954 344444 56777889999999988763
No 268
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.98 E-value=0.0043 Score=57.01 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=70.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccccc--cChhhhhcCCcEEEEeccCChh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYC--ANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~--~~l~el~~~aDiv~~~~p~t~~ 143 (223)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|+.+.... +.... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 36789999999999999999999999999999997653211 11111 1223556789999887 43322
Q ss_pred hhh-----------ccCH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 144 THH-----------IINK-DVM-AELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 144 t~~-----------li~~-~~l-~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
+.. ++++ +.+ +..+...+-|--+.|+.--.+-+...|+....
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 211 2221 122 22233356666678888888888888876443
No 269
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.97 E-value=0.0029 Score=56.24 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=55.3
Q ss_pred CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC----------Cc--cccc--ChhhhhcCCcEEEEeccCCh
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV----------LF--PYCA--NVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~----------~~--~~~~--~l~el~~~aDiv~~~~p~t~ 142 (223)
++|+|+|. |.+|+.+++.|... ++++. .+++...... .. ..+. +.++++.++|++++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999977 66776 4343321111 10 0122 4456667899999999944
Q ss_pred hhhhccCHHHHhc-CCCCcEEEEcCCCcccC
Q 035615 143 QTHHIINKDVMAE-LGKGGMIINVGRGALID 172 (223)
Q Consensus 143 ~t~~li~~~~l~~-mk~ga~lIN~arg~~vd 172 (223)
....+ ... .+.|..+|+.|-.-=.+
T Consensus 80 ~s~~~-----~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VSAEL-----APELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred HHHHH-----HHHHHhCCCEEEeCChhhhcC
Confidence 22222 222 25688999888443333
No 270
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.96 E-value=0.0056 Score=52.40 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=43.1
Q ss_pred CEEEEEe-cChHHHHHHHHHHh-CCCEEE-EEcCCCCCC-------------CCcccccChhhhhcCCcEEEEecc
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQA-FGFIIS-YNSRRKRPS-------------VLFPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDiv~~~~p 139 (223)
.+|+|+| +|+||+.+++.+.. -++++. ++|+..... .+...+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 4799999 69999999999875 588865 567432211 122335778888667999999885
No 271
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.95 E-value=0.0022 Score=58.44 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=47.8
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cc-------ccccChhhh-hcCCcEEEEeccCChh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LF-------PYCANVYDL-AVNSDVLVVCCALTEQ 143 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~-------~~~~~l~el-~~~aDiv~~~~p~t~~ 143 (223)
++|.|+|+|.+|+.+++.|...|++|.+++++++... +. .....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 5799999999999999999999999999988664321 11 112234555 7889999999885433
No 272
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0033 Score=55.78 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=42.5
Q ss_pred CEEEEEecChHHHHHHHHHHh-CCCEEEE-EcCCCCCC------------------------CCcccccChhhhhcCCcE
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA-FGFIISY-NSRRKRPS------------------------VLFPYCANVYDLAVNSDV 133 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~------------------------~~~~~~~~l~el~~~aDi 133 (223)
.+|||+|+|+||+.+++.+.. -++++.+ .++.+... .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 479999999999999998875 4778664 44333100 011112457788888999
Q ss_pred EEEeccCC
Q 035615 134 LVVCCALT 141 (223)
Q Consensus 134 v~~~~p~t 141 (223)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998743
No 273
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.93 E-value=0.0034 Score=52.98 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=54.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~-- 119 (223)
..|++++|.|+|.|.+|..+|+.|...|. ++..+|+..-... + . .
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 45899999999999999999999999998 4777665432210 0 0 0
Q ss_pred --c--ccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615 120 --Y--CANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155 (223)
Q Consensus 120 --~--~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~ 155 (223)
. ..++.++++++|+|+.++ .+.+++..+++...+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 0 022456778888887766 4566777776655443
No 274
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.92 E-value=0.0075 Score=52.23 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=67.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCC---CCC----Cc-------ccccCh------hhhhcCCcE
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKR---PSV----LF-------PYCANV------YDLAVNSDV 133 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~---~~~----~~-------~~~~~l------~el~~~aDi 133 (223)
.+++++++.|+|.|..+++++..+...|+ +|.+++|+.. +.+ .. ....++ .+.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45789999999999999999999988898 6999999853 111 00 011222 234567899
Q ss_pred EEEeccCCh--hhhh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 134 LVVCCALTE--QTHH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 134 v~~~~p~t~--~t~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
|+.++|..- .... ++.. ...++++.++.++--.+. +..|+++-++..+
T Consensus 200 vINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~ 250 (288)
T PRK12749 200 LTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH--MTKLLQQAQQAGC 250 (288)
T ss_pred EEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc--cCHHHHHHHHCCC
Confidence 999998531 1111 1111 234677888888765443 3345555444433
No 275
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.91 E-value=0.013 Score=50.63 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC--CCCCCCcccccChhhhhcCCcEEEEeccCChhh----------hh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR--KRPSVLFPYCANVYDLAVNSDVLVVCCALTEQT----------HH 146 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t----------~~ 146 (223)
|++++|||-=.--..+++.|...|++|..+... .....++....+.++.++++|+|++=+|.+... +-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 689999999888889999999999998766533 222234445556666799999999999966542 11
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEeeCCC
Q 035615 147 IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDINGVGLDVFE 194 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~~a~lDV~~ 194 (223)
.++++.++.++++++ +-++ ++..++.++.++..+. ..|.++
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 246889999998664 4444 4445566677777776 554443
No 276
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.90 E-value=0.0026 Score=49.00 Aligned_cols=85 Identities=14% Similarity=0.287 Sum_probs=50.7
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcE
Q 035615 82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGM 161 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~ 161 (223)
+-|+|.|.+++++++.++.+|++|.++|+.++. +..++-+. +.+. ..+. +.+ .+.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~----~~~~--~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP----DDIL--EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHHH--HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh----HHHH--hcc-CCCCCeE
Confidence 468999999999999999999999999877431 12344332 2221 1111 111 3566666
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCceEEE
Q 035615 162 IINVGRGALIDEKEMLQFLVQGDINGVG 189 (223)
Q Consensus 162 lIN~arg~~vd~~al~~aL~~~~i~~a~ 189 (223)
+| +.++.-.|.+.|.++|+. ...+.+
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 66 888888999988888887 444343
No 277
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.90 E-value=0.0014 Score=48.35 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=51.4
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------cccChhhh-hcCCcEEEEeccCChhhhhcc
Q 035615 82 VGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------YCANVYDL-AVNSDVLVVCCALTEQTHHII 148 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el-~~~aDiv~~~~p~t~~t~~li 148 (223)
|.|+|+|.+|+.+++.|+..+.+|++++++++... +.. ....++++ +.++|.++++.+....+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence 57999999999999999997779999988764321 111 11223332 67899999988744333332
Q ss_pred CHHHHhcCCCCcEEE
Q 035615 149 NKDVMAELGKGGMII 163 (223)
Q Consensus 149 ~~~~l~~mk~ga~lI 163 (223)
...++.+-+...++
T Consensus 80 -~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 80 -ALLARELNPDIRII 93 (116)
T ss_dssp -HHHHHHHTTTSEEE
T ss_pred -HHHHHHHCCCCeEE
Confidence 34555555555554
No 278
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.87 E-value=0.011 Score=51.50 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=69.6
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEeccC
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p~ 140 (223)
.++|++|+++|- +++.++.+..+..+|++|.+..|..-... + +....++++.++.+|+|....-.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 378999999998 49999999999999999998876543111 1 12357899999999999774210
Q ss_pred -----C-hh-----hhhccCHHHHhcCCCCcEEEEcC-CCcccC
Q 035615 141 -----T-EQ-----THHIINKDVMAELGKGGMIINVG-RGALID 172 (223)
Q Consensus 141 -----t-~~-----t~~li~~~~l~~mk~ga~lIN~a-rg~~vd 172 (223)
. ++ ...-++++.++.+|++++|.-+. ||.=|+
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~ 270 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEID 270 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccC
Confidence 0 11 12346788899999999888655 554333
No 279
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.86 E-value=0.0016 Score=53.87 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=60.2
Q ss_pred CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------C---cccccChhhhhcCCcEEEEeccCC
Q 035615 72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------L---FPYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~---~~~~~~l~el~~~aDiv~~~~p~t 141 (223)
+...+|.|++|.|||-|..|..=++.+...|.+|+++++...+.. . ....-+.++ +..+++|+.+++..
T Consensus 5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~ 83 (210)
T COG1648 5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE 83 (210)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH
Confidence 455679999999999999999999999999999999988772211 1 111122333 44489999888643
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEc
Q 035615 142 EQTHHIINKDVMAELGKGGMIINV 165 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~ 165 (223)
+ +|++.+...++-.+++|+
T Consensus 84 ~-----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 E-----LNERIAKAARERRILVNV 102 (210)
T ss_pred H-----HHHHHHHHHHHhCCceec
Confidence 3 344444455554566665
No 280
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.86 E-value=0.0019 Score=58.95 Aligned_cols=61 Identities=8% Similarity=0.043 Sum_probs=44.8
Q ss_pred CEEEEEecChHHHHHHH---HH---HhCCCEEEEEcCCCCCCC-----------------CcccccChhhhhcCCcEEEE
Q 035615 80 MQVGIVRLGNIGSEVLN---RL---QAFGFIISYNSRRKRPSV-----------------LFPYCANVYDLAVNSDVLVV 136 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDiv~~ 136 (223)
.+|+|||.|.+|...+- .+ ...|.+|..||++++... ......++.+.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998554 22 334678999998865321 11124577899999999999
Q ss_pred eccC
Q 035615 137 CCAL 140 (223)
Q Consensus 137 ~~p~ 140 (223)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9983
No 281
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.85 E-value=0.0027 Score=57.11 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=62.7
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhC-CCEEEEEcCCCCCCCC------------cccccChhh-hhcCCcEEEEeccCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAF-GFIISYNSRRKRPSVL------------FPYCANVYD-LAVNSDVLVVCCALT 141 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~------------~~~~~~l~e-l~~~aDiv~~~~p~t 141 (223)
-..++|+|+|. |.+|+.+.+.|... ++++..+.+.....+. .....+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35569999996 99999999999877 7787766543322110 011222222 257899999999843
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQ 178 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~ 178 (223)
.. .+....|+.|..+|+.|..-..+.++.++
T Consensus 116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 -TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred -HH-----HHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 22 34444456789999999766666554443
No 282
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.85 E-value=0.0038 Score=54.70 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=64.8
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC----------c----c-c-ccChhhhhcCCcEEEEeccC-
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL----------F----P-Y-CANVYDLAVNSDVLVVCCAL- 140 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~----------~----~-~-~~~l~el~~~aDiv~~~~p~- 140 (223)
.+|+|||.|.+|..+|-.+...|. ++..+|...+...+ + . . ..+.+ .++.||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence 589999999999999998876665 68889887653220 0 1 1 13444 48999999997632
Q ss_pred -Ch-hhh-hcc--C-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEE
Q 035615 141 -TE-QTH-HII--N-------KDVMAELGKGGMIINVGRGALIDEKEMLQF--LVQGDINGV 188 (223)
Q Consensus 141 -t~-~t~-~li--~-------~~~l~~mk~ga~lIN~arg~~vd~~al~~a--L~~~~i~~a 188 (223)
.+ .++ .++ | .+.+....+.+++|+++.-.=+-...+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 21 223 111 1 123444577899999983222222233333 334555555
No 283
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.83 E-value=0.0029 Score=54.90 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=41.7
Q ss_pred EEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------Cc--c--cccChhhhhcCCcEEEEecc
Q 035615 82 VGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------LF--P--YCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~--~--~~~~l~el~~~aDiv~~~~p 139 (223)
|+|||.|.||..+|..+...|. +|+.+|++++... .. . ...+. +.++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999886665 9999998765321 00 0 11344 45899999999873
No 284
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.82 E-value=0.0087 Score=53.04 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=64.1
Q ss_pred CEEEEEecChHHHHHHHHHHhC----------CCEEE-EEcCCCC-------CC--------C-C-cc------cccChh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF----------GFIIS-YNSRRKR-------PS--------V-L-FP------YCANVY 125 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~-------~~--------~-~-~~------~~~~l~ 125 (223)
.+|+|+|+|.||+.+++.+... +++|. +.|++.. .. . + .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998754 56755 4454321 00 0 0 00 123778
Q ss_pred hhhc--CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 035615 126 DLAV--NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQGDIN 186 (223)
Q Consensus 126 el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~~i~ 186 (223)
+++. +.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...+.|.++.++....
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8874 68999999985443211111122444566766666544443 2456777777776654
No 285
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.80 E-value=0.016 Score=50.64 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=68.4
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----------C--cccccChhhhhcCCcEEEEec---
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-----------L--FPYCANVYDLAVNSDVLVVCC--- 138 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------~--~~~~~~l~el~~~aDiv~~~~--- 138 (223)
.+.|++|+++|= +++.++.+..+..+|++|.+..|..-... + +....++++.++.+|+|..-.
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~ 228 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS 228 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence 378999999996 88999999999999999998876542221 1 223578999999999998752
Q ss_pred -cCC---hh-----hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 139 -ALT---EQ-----THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 139 -p~t---~~-----t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
... .+ ...-++++.++.+|++++|.-+.-
T Consensus 229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP 266 (304)
T PRK00779 229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP 266 (304)
T ss_pred cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence 110 11 234568888988999998887763
No 286
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.79 E-value=0.027 Score=47.82 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCC-----------EEE
Q 035615 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF-----------IIS 106 (223)
Q Consensus 38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~ 106 (223)
+|=-+++-+++..|- .+..|++.+|.|+|.|..|-.+|+.+...+. +++
T Consensus 4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~ 63 (254)
T cd00762 4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW 63 (254)
T ss_pred hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence 344567777777763 3456889999999999999999999987665 577
Q ss_pred EEcCCCC----C--CC----C---c----ccccChhhhhc--CCcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEE
Q 035615 107 YNSRRKR----P--SV----L---F----PYCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMAELG---KGGMIIN 164 (223)
Q Consensus 107 ~~~~~~~----~--~~----~---~----~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN 164 (223)
.+|+..- . .. . + ....+|.|+++ +.|+++=.- ..-++|+++.++.|. +..++.=
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 7776531 0 00 0 1 12358999999 999886532 235789999999998 8899998
Q ss_pred cCCCccc---CHHHHHHHHHcCCceEEEeeCCCCCCCCCC--CCCCCCceEEccCCC
Q 035615 165 VGRGALI---DEKEMLQFLVQGDINGVGLDVFENDPNVPK--EPLRLDNIVLLPCQN 216 (223)
Q Consensus 165 ~arg~~v---d~~al~~aL~~~~i~~a~lDV~~~EP~~~~--~l~~~~nv~~TPH~a 216 (223)
.|+-..- ..++.+++=+-+.|.+-+.-.+.++- ... ..-+..|+++-|=++
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~-~g~~~~~~Q~NN~~iFPGig 195 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL-NGGTYKPGQGNNLYIFPGVA 195 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc-CCceeecccccceeeccchh
Confidence 8877663 33444433322234322221111111 001 233667888888654
No 287
>PLN02527 aspartate carbamoyltransferase
Probab=96.77 E-value=0.016 Score=50.72 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=68.3
Q ss_pred ccCCCEEEEEecC---hHHHHHHHHHHhC-CCEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEEEEecc
Q 035615 76 KLGGMQVGIVRLG---NIGSEVLNRLQAF-GFIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 76 ~l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv~~~~p 139 (223)
.+.|+||+++|-+ ++.++.+..+..+ |++|.+..|..-... + +....++++.++.+|+|....-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 3789999999965 6889999988887 999988876542111 1 1235789999999999988431
Q ss_pred CCh------h------hhhccCHHHHhcCCCCcEEEEcC-CCccc
Q 035615 140 LTE------Q------THHIINKDVMAELGKGGMIINVG-RGALI 171 (223)
Q Consensus 140 ~t~------~------t~~li~~~~l~~mk~ga~lIN~a-rg~~v 171 (223)
..+ . ....++++.++..|++++|..+. ||.=|
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei 272 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEI 272 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccc
Confidence 100 1 12557888898899999888665 55433
No 288
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.76 E-value=0.0044 Score=54.95 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=55.3
Q ss_pred CEEEEEec-ChHHHHHHHHHHhC-CCEEE-EEcCCCCCCC-----C-cc-----cccChhh-hhcCCcEEEEeccCChhh
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAF-GFIIS-YNSRRKRPSV-----L-FP-----YCANVYD-LAVNSDVLVVCCALTEQT 144 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~-----~-~~-----~~~~l~e-l~~~aDiv~~~~p~t~~t 144 (223)
++|+|+|. |.+|+.+++.+... ++++. +.++...... . .. .+.++++ ...++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 68999996 99999999999876 67765 4554322110 0 11 1223333 4578999999999542 2
Q ss_pred hhccCHHHHhcCCCCcEEEEcCCCcccCH
Q 035615 145 HHIINKDVMAELGKGGMIINVGRGALIDE 173 (223)
Q Consensus 145 ~~li~~~~l~~mk~ga~lIN~arg~~vd~ 173 (223)
..+. . ..++.|..+||.|-.--.+.
T Consensus 82 ~~~v-~---~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA-P---QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH-H---HHHhCCCEEEECCcccCCCC
Confidence 2221 1 12356899999985444433
No 289
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.74 E-value=0.0031 Score=55.12 Aligned_cols=60 Identities=25% Similarity=0.216 Sum_probs=45.3
Q ss_pred CEEEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCCC-------cc--------cccChhhhhcCCcEEEEeccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSVL-------FP--------YCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~el~~~aDiv~~~~p~ 140 (223)
++|+|||.|.+|..+|..+...| .+|..+|++.....+ .. ...+. +.++.||+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 47999999999999999999888 479999987643321 10 01233 558999999999875
No 290
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.73 E-value=0.0026 Score=56.99 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=55.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------------------------------Cc--c--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------------------------------LF--P-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------------------------------~~--~-- 119 (223)
..|++++|.|+|+|.+|..+++.|...|+ ++..+|...-... .. .
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 56899999999999999999999999998 6777765421100 00 0
Q ss_pred ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhc
Q 035615 120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAE 155 (223)
Q Consensus 120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~ 155 (223)
...+.+++++++|+|+.|+ .+.+++.++++...+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~~ 155 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEIT 155 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 0124556788899887665 4667787777654443
No 291
>PRK08223 hypothetical protein; Validated
Probab=96.71 E-value=0.0071 Score=52.29 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46999999999999999999999999998 46666644
No 292
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0081 Score=51.91 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=71.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc----------ccccChhhh--hcCCcEEEEeccCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF----------PYCANVYDL--AVNSDVLVVCCALT 141 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~----------~~~~~l~el--~~~aDiv~~~~p~t 141 (223)
.+..|+++.|+|.|..+++++..|+..|+ +|.+++|+.++.+.. .......++ ..++|+|+.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45678999999999999999999999996 699999987653210 011222222 22699999999865
Q ss_pred hhhh---hccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 142 EQTH---HIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 142 ~~t~---~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
-.-. ..++ ...++++.++.++--.+. +..-|..|=+.|
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 3322 1333 456788999999876665 444444444445
No 293
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.69 E-value=0.011 Score=51.93 Aligned_cols=90 Identities=8% Similarity=0.072 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCC-----------------------C-------------cccccC--hhhhhcCC
Q 035615 90 IGSEVLNRLQAFGFIISYNSRRKRPSV-----------------------L-------------FPYCAN--VYDLAVNS 131 (223)
Q Consensus 90 iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------------------~-------------~~~~~~--l~el~~~a 131 (223)
||..+|..+...|++|..+|++++... + .....+ ..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 688999999999999999999874200 0 001112 55788999
Q ss_pred cEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 035615 132 DVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLV 181 (223)
Q Consensus 132 Div~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~ 181 (223)
|+|+-++|...+.+..+-.+..+.++++++| ++.-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999888887767788889999988 45556666777777764
No 294
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.69 E-value=0.059 Score=46.44 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS 106 (223)
Q Consensus 38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~ 106 (223)
+|=-+++-+++..|- .+..|.+.+|.|+|.|.-|-.+|+.+... |. +++
T Consensus 4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~ 63 (279)
T cd05312 4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW 63 (279)
T ss_pred HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence 445567778877774 34568899999999999999999999876 77 688
Q ss_pred EEcCCCC----C--CC----Cc----c--cccChhhhhc--CCcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEEc
Q 035615 107 YNSRRKR----P--SV----LF----P--YCANVYDLAV--NSDVLVVCCALTEQTHHIINKDVMAELG---KGGMIINV 165 (223)
Q Consensus 107 ~~~~~~~----~--~~----~~----~--~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN~ 165 (223)
.+|+..- . .. .+ . ...+|.|+++ +.|+++=+- ..-++|+++.++.|. +..++.=.
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 8886531 1 10 00 1 2357999999 889886532 124789999999998 78999999
Q ss_pred CCCcccCHHHHHHHHH--cCC-ceEEEeeCCCCCCCC-C---CCCCCCCceEEccCCC
Q 035615 166 GRGALIDEKEMLQFLV--QGD-INGVGLDVFENDPNV-P---KEPLRLDNIVLLPCQN 216 (223)
Q Consensus 166 arg~~vd~~al~~aL~--~~~-i~~a~lDV~~~EP~~-~---~~l~~~~nv~~TPH~a 216 (223)
|+-..--|-.-.++.+ +|+ |.+.+.- -.|.. + ...=+..|+++-|=++
T Consensus 140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsP---f~pv~~~Gr~~~p~Q~NN~~iFPGig 194 (279)
T cd05312 140 SNPTSKAECTAEDAYKWTDGRALFASGSP---FPPVEYNGKTYVPGQGNNAYIFPGIG 194 (279)
T ss_pred CCcCCccccCHHHHHHhhcCCEEEEeCCC---CCCeeeCCeEecCCCcceeeeccchh
Confidence 8876533322223333 354 4432221 11111 0 1233556888888654
No 295
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.67 E-value=0.0014 Score=50.72 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=55.8
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCC--CEEEEEcCCCCCCCC---------------cccccChhhhhcCCcEEEEeccC-
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFG--FIISYNSRRKRPSVL---------------FPYCANVYDLAVNSDVLVVCCAL- 140 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDiv~~~~p~- 140 (223)
++|+|||. |++|+.+|-.|...+ -++..+|+......+ ........+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 58999999 999999999987555 479999987543210 11123566778999999998732
Q ss_pred -Ch-hhh-hcc--CH-------HHHhcCCCCcEEEEcC
Q 035615 141 -TE-QTH-HII--NK-------DVMAELGKGGMIINVG 166 (223)
Q Consensus 141 -t~-~t~-~li--~~-------~~l~~mk~ga~lIN~a 166 (223)
.+ +++ .++ |. +.+.+..|.++++.++
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 22 111 111 11 2233445778888874
No 296
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.66 E-value=0.0035 Score=55.91 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 47777654
No 297
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.66 E-value=0.013 Score=51.97 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=67.6
Q ss_pred CCEEEEEecChHHHHHHHHHHhC--CCEEE-EEcCCCCCCC------CcccccChhhhhcCCcEEEEeccCC-hhhhhcc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAF--GFIIS-YNSRRKRPSV------LFPYCANVYDLAVNSDVLVVCCALT-EQTHHII 148 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~el~~~aDiv~~~~p~t-~~t~~li 148 (223)
-.+|||||. .+|+..++.++.. ++++. ++|+..++.. +...+.+.+|++.+.|++++++|.+ +...|.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~- 80 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS- 80 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH-
Confidence 368999999 6899999888765 47765 5787765432 3335789999999999999999742 222221
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+-..+.|+.|.-++.=---..-+.++|+++.++.++.
T Consensus 81 -e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 81 -ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRR 117 (343)
T ss_pred -HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCE
Confidence 2223334555433332222245667777777776665
No 298
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.66 E-value=0.0029 Score=46.48 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCC--------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcE
Q 035615 90 IGSEVLNRLQAFGFIISYNSRRKRPSV--------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGM 161 (223)
Q Consensus 90 iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~ 161 (223)
-+..+++.|+..|++|.+|||.-.... +.....++++.++.+|+|+++++.. +-+.+--++....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE
Confidence 456889999999999999998765432 2333568899999999999999754 3333323456677888899
Q ss_pred EEEc
Q 035615 162 IINV 165 (223)
Q Consensus 162 lIN~ 165 (223)
||++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9987
No 299
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.65 E-value=0.0058 Score=49.97 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=32.8
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~ 111 (223)
..|++++|.|+|+|.+|..+++.|...|+. +..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 569999999999999999999999999995 7777654
No 300
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.65 E-value=0.0042 Score=55.07 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|..++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999999 78888765
No 301
>PLN02342 ornithine carbamoyltransferase
Probab=96.64 E-value=0.025 Score=50.33 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=68.0
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------CcccccChhhhhcCCcEEEEec---
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVCC--- 138 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~~--- 138 (223)
.+.|+||+++|= .++-++++..+..+|++|.+..|..-... .+....++++.++.+|+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 478999999995 56888888889999999988876542211 1224578899999999998763
Q ss_pred -cCChh--------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 139 -ALTEQ--------THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 139 -p~t~~--------t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
-..+. ....++++.++.+|++++|.-+.-
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP 308 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLP 308 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCC
Confidence 11111 125678999999999999988763
No 302
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.64 E-value=0.021 Score=50.63 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=68.3
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~ 138 (223)
.+.|++|+++|= .++.++++..+..+|++|.++.|..-... + +....++++.++.+|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 488999999995 78889999999999999998876532111 1 223578999999999998833
Q ss_pred -----cCC---hh------hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 139 -----ALT---EQ------THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 139 -----p~t---~~------t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
... ++ ....++++.++.+|++++|.-+.-
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP 273 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP 273 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence 110 01 125678999999999999987763
No 303
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.63 E-value=0.003 Score=60.13 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=59.4
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-c---ccC---hhhh-hcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-Y---CAN---VYDL-AVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-~---~~~---l~el-~~~aDiv~~~~p~t~~t~ 145 (223)
..++.|+|+|++|+.+++.|...|.++++.|.+++..+ +.. . ..+ ++++ ++++|.++++.+..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 45799999999999999999999999999998876432 111 0 112 2222 678999999998766555
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
.++ ...+++.|...+|--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 543 33445556655554433
No 304
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.60 E-value=0.006 Score=43.90 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCEEEEEecChHHHHHHHHH-HhCCCEE-EEEcCCCCCCC----CcccccChhhhhcC--CcEEEEeccCChhhhhcc
Q 035615 79 GMQVGIVRLGNIGSEVLNRL-QAFGFII-SYNSRRKRPSV----LFPYCANVYDLAVN--SDVLVVCCALTEQTHHII 148 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l-~~~G~~V-~~~~~~~~~~~----~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li 148 (223)
..++.|+|.|+.|++++... ...|+++ .++|.++.... +...+.+++++.+. .|+-++++|.. .....+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 45799999999999997544 3557663 45665554322 33334577776665 99999999833 334443
No 305
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.60 E-value=0.004 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
.++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 6899999999999999999999999 57777754
No 306
>PRK07411 hypothetical protein; Validated
Probab=96.59 E-value=0.004 Score=56.20 Aligned_cols=83 Identities=22% Similarity=0.116 Sum_probs=57.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------c--c--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------F--P-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~--~-- 119 (223)
..|+..+|.|||+|.+|..+++.|...|. ++..+|...-... + . .
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999999998 4667664421100 0 0 0
Q ss_pred ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCC
Q 035615 120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGK 158 (223)
Q Consensus 120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ 158 (223)
...+..+++.++|+|+.|+ .+.+++.++++...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 0123456788899887765 4567788887665554444
No 307
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.59 E-value=0.017 Score=52.44 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhhhhcCCcEEEEeccCChh
Q 035615 76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||...... ......++++.++.+|.|+++.+..+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~- 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE- 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-
Confidence 478999999997 45678899999999999999998754322 11124688899999999999987543
Q ss_pred hhhccCHHHHh-cCCCCcEEEEc
Q 035615 144 THHIINKDVMA-ELGKGGMIINV 165 (223)
Q Consensus 144 t~~li~~~~l~-~mk~ga~lIN~ 165 (223)
-+. ++-+.++ .|+ ..++++.
T Consensus 389 ~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 389 FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 222 3444443 455 4577774
No 308
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0091 Score=51.80 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred cCCCEEEEEe---cChHHHHHHHHHHhCCCEEEEEcCCCCCC-----C---C---c-ccccChhhhhcCCcEEEEec---
Q 035615 77 LGGMQVGIVR---LGNIGSEVLNRLQAFGFIISYNSRRKRPS-----V---L---F-PYCANVYDLAVNSDVLVVCC--- 138 (223)
Q Consensus 77 l~g~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~---~---~-~~~~~l~el~~~aDiv~~~~--- 138 (223)
+.|++|+|+| +|+..++.++.|+.||.+|..+.|..-.. . . . ......+|.++++|++.+.-
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ 235 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQK 235 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhH
Confidence 8999999999 89999999999999999999998764332 1 1 1 22445566999999997652
Q ss_pred -----cCChh---hhhccCHHHHhc-CCCCcEEEEcC
Q 035615 139 -----ALTEQ---THHIINKDVMAE-LGKGGMIINVG 166 (223)
Q Consensus 139 -----p~t~~---t~~li~~~~l~~-mk~ga~lIN~a 166 (223)
|.-++ -.+.+....++. +|+++++.--+
T Consensus 236 ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~ 272 (316)
T COG0540 236 ERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPL 272 (316)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCC
Confidence 11111 112233445556 88888887655
No 309
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.58 E-value=0.012 Score=48.71 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=32.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~ 111 (223)
..|+.++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999999985 7777765
No 310
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.58 E-value=0.015 Score=52.97 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=69.1
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccc--cccChhhhhcCCcEEEEeccCChh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFP--YCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
++.+|++.|+|.|.+|..+|+.|...|++|.++|+...... +.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36799999999999999999999999999999998652210 111 112233556789999887533222
Q ss_pred hh--------h--ccCH-HH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 144 TH--------H--IINK-DV-MAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 144 t~--------~--li~~-~~-l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
.. + ++.. +. ....+...+-|--+.|+.--.+-|...|+..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 11 1 1111 11 2222323455566678888888888888753
No 311
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.57 E-value=0.039 Score=46.33 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=72.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCC-----------C--C-----------------c--c--
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPS-----------V--L-----------------F--P-- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----------~--~-----------------~--~-- 119 (223)
..|++++|.|+|+|.+|..+++.|...|. ++..+|...-.. . + . .
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 35889999999999999999999999998 577776442110 0 0 0 0
Q ss_pred --c--ccChhhhh-cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHH
Q 035615 120 --Y--CANVYDLA-VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALID-----------------EKEML 177 (223)
Q Consensus 120 --~--~~~l~el~-~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~vd-----------------~~al~ 177 (223)
. ..+.++++ .+.|+|+.|+- +...+..+++...+. .-.++...+-|.-.| ...+.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R 163 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVR 163 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHH
Confidence 0 12345555 36899988874 334444344333221 123444455554333 23456
Q ss_pred HHHHcCCceEEEeeCCCCCCC
Q 035615 178 QFLVQGDINGVGLDVFENDPN 198 (223)
Q Consensus 178 ~aL~~~~i~~a~lDV~~~EP~ 198 (223)
+.|++.++..-.-=||..|++
T Consensus 164 ~~Lrk~~~~~~~~~v~S~E~~ 184 (231)
T cd00755 164 KRLRKRGIFFGVPVVYSTEPP 184 (231)
T ss_pred HHHHHcCCCCCeEEEeCCCCC
Confidence 677777775223346888864
No 312
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.57 E-value=0.005 Score=57.75 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=58.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--------ccccChhhhh-cCCcEEEEeccCCh--hh
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF--------PYCANVYDLA-VNSDVLVVCCALTE--QT 144 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~el~-~~aDiv~~~~p~t~--~t 144 (223)
++.++++.|+|.|.+|++++..|...|++|++++|+.++.... ....++.+.. ..+|+|+.+.|..- ..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~ 455 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV 455 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence 5779999999999999999999999999999999875432210 1112222222 35688887776431 11
Q ss_pred hh-ccCHHHHhcCCCCcEEEEcCCCc
Q 035615 145 HH-IINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 145 ~~-li~~~~l~~mk~ga~lIN~arg~ 169 (223)
.. .++. ..+++..+++++.-.+
T Consensus 456 ~~~pl~~---~~l~~~~~v~D~vY~P 478 (529)
T PLN02520 456 DETPISK---HALKHYSLVFDAVYTP 478 (529)
T ss_pred CCCcccH---hhCCCCCEEEEeccCC
Confidence 11 1222 3456677777776544
No 313
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.55 E-value=0.0034 Score=49.74 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=47.6
Q ss_pred EEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC---C-------cccccChhhhhcCCcEEEEeccCCh
Q 035615 82 VGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV---L-------FPYCANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 82 vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~-------~~~~~~l~el~~~aDiv~~~~p~t~ 142 (223)
|.|+| .|.+|+.+++.|...|++|.+..|++.+.. + .....++.+.++.+|.|+.+++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 67899 499999999999999999999988876432 1 1122455677899999999997543
No 314
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.52 E-value=0.0049 Score=56.76 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=58.5
Q ss_pred CCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------C-cc--cccChhhhhcCCcEEEEeccCCh
Q 035615 72 PLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------L-FP--YCANVYDLAVNSDVLVVCCALTE 142 (223)
Q Consensus 72 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~--~~~~l~el~~~aDiv~~~~p~t~ 142 (223)
+..-+|+|++|.|||-|.++..=++.|..+|++|.++++...+.. + .. ...-.++.++.+++|+.++...+
T Consensus 5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (457)
T PRK10637 5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA 84 (457)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence 455689999999999999999988999999999999987643221 0 00 00112345678888888765332
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcC
Q 035615 143 QTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
+|++.....+...+++|++
T Consensus 85 -----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 -----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred -----HhHHHHHHHHHcCcEEEEC
Confidence 3344444444444555543
No 315
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.50 E-value=0.022 Score=50.45 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=66.3
Q ss_pred ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|++|++||=+ ++.++++..+..+|++|.+..|..-... + +....++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 6788889999999999998876532111 1 22357899999999999874
Q ss_pred c----cC---Chh------hhhccCHHHHhcC-CCCcEEEEcCC
Q 035615 138 C----AL---TEQ------THHIINKDVMAEL-GKGGMIINVGR 167 (223)
Q Consensus 138 ~----p~---t~~------t~~li~~~~l~~m-k~ga~lIN~ar 167 (223)
. .. ..+ ....++++.++.. |++++|.-+.-
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP 276 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP 276 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence 2 10 001 1234788888886 78999988764
No 316
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.49 E-value=0.019 Score=52.44 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=62.3
Q ss_pred CEEEEEecChHHHHHHHHHHhC----------CCEEE-EEcCCCCCCC-----CcccccChhhhhc--CCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAF----------GFIIS-YNSRRKRPSV-----LFPYCANVYDLAV--NSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~--~aDiv~~~~p~t 141 (223)
.+|||+|+|.||+.+++.+... ++++. +++++..... ....+.++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 5799999999999999887432 45544 5566554322 1234568899985 469999887643
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN 186 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~ 186 (223)
.....+ ..+.|+.|.-+|...-..+. .-+.|.++.++.+..
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 221211 22445566656544333222 236677777666654
No 317
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.49 E-value=0.004 Score=58.67 Aligned_cols=83 Identities=17% Similarity=0.061 Sum_probs=55.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc----ccC---hhhh-hcCCcEEEEeccCChhhhh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY----CAN---VYDL-AVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~----~~~---l~el-~~~aDiv~~~~p~t~~t~~ 146 (223)
-++-|+|+|++|+.+++.|+..|.+|+++|.+++..+ +... ..+ ++++ ++++|.++++++...++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5689999999999999999999999999998765432 1110 112 2222 5689999999987666555
Q ss_pred ccCHHHHhcCCCCcEEEE
Q 035615 147 IINKDVMAELGKGGMIIN 164 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN 164 (223)
++.. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 4422 233345555553
No 318
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.48 E-value=0.012 Score=56.10 Aligned_cols=65 Identities=22% Similarity=0.422 Sum_probs=48.8
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEc
Q 035615 31 KQADLPIVADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNS 109 (223)
Q Consensus 31 ~~~~~~~vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~ 109 (223)
+-.++...||-++-+=|-+.| |..-+++.. ..|++.+|.|+|.|.+|..+|+.|.+.|+. +..+|
T Consensus 304 ~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~-ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD 369 (664)
T TIGR01381 304 KEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQL-ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD 369 (664)
T ss_pred hhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhH-HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence 455677788888888777666 332222211 568999999999999999999999999994 66655
No 319
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.47 E-value=0.0046 Score=59.10 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-c---ccC---hhh-hhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-Y---CAN---VYD-LAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-~---~~~---l~e-l~~~aDiv~~~~p~t~~t~ 145 (223)
..+|-|+|+|++|+.+++.|.+.|.++++.|.+++..+ +.. . ..+ +++ =++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999988776432 211 1 122 222 2568999999997665554
Q ss_pred hccCHHHHhcCCCCcEEEE
Q 035615 146 HIINKDVMAELGKGGMIIN 164 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN 164 (223)
.+. ...+.+.|...++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 442 23444445544443
No 320
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.47 E-value=0.0079 Score=57.03 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=48.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-Cc------ccccC---hhhhhcCCcEEEEecc
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-LF------PYCAN---VYDLAVNSDVLVVCCA 139 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~------~~~~~---l~el~~~aDiv~~~~p 139 (223)
.+...|+|||||-|..|+.+++.++.+|++|+.+++.+.... .+ ..+.+ +.++.+++|+|+....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 347899999999999999999999999999999988764221 00 01233 5566788999877643
No 321
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.46 E-value=0.031 Score=48.84 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=68.0
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEec-
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCC- 138 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~- 138 (223)
+.|.+|+++|= +++-++.+..+..+|++|.+..|..-... + +....++++.++.+|+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999995 78999999999999999988876542211 1 223578899999999998743
Q ss_pred -cCC-----h-----hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 139 -ALT-----E-----QTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 139 -p~t-----~-----~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
... + .....++++.++.+|++++|.-+.-
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP 265 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLP 265 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCC
Confidence 101 1 1234678999999999999887763
No 322
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0079 Score=55.21 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=68.5
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEec--cCC-h----h
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCC--ALT-E----Q 143 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~--p~t-~----~ 143 (223)
+++|++|.|+|+|..|.++|+.|+..|++|.++|....... +......-.+-+..+|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 47789999999999999999999999999999996543211 1111111112356789887532 211 1 1
Q ss_pred h---hh----ccCH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 144 T---HH----IINK-DVMAE-L-----GKGGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 144 t---~~----li~~-~~l~~-m-----k~ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
. +. ++.+ +.+.. + +...+-|.-+.|+.--..-|...|++..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g 140 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG 140 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 11 1332 22222 2 3345667777899888888888887643
No 323
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.43 E-value=0.016 Score=51.27 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=66.6
Q ss_pred ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|+||++||-+ ++.++++..+..+|++|.+..|..-... + +....++++.++.+|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999986 7899999999999999988876542211 1 12347889999999999885
Q ss_pred ccC-------Chh-----hhhccCHHHHh-cCCCCcEEEEcCC
Q 035615 138 CAL-------TEQ-----THHIINKDVMA-ELGKGGMIINVGR 167 (223)
Q Consensus 138 ~p~-------t~~-----t~~li~~~~l~-~mk~ga~lIN~ar 167 (223)
+=. .++ ...-++++.++ .+|++++|.-+.-
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP 274 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLP 274 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCC
Confidence 310 011 13456788888 4789999887754
No 324
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.42 E-value=0.0035 Score=56.19 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=42.6
Q ss_pred EEEEecChHHHHHHHHHHhCC-C-EEEEEcCCCCCCC---------C-------cccccChhhhhcCCcEEEEeccC
Q 035615 82 VGIVRLGNIGSEVLNRLQAFG-F-IISYNSRRKRPSV---------L-------FPYCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~~---------~-------~~~~~~l~el~~~aDiv~~~~p~ 140 (223)
|+|+|.|.+|+.+++.|...+ + +|++.+|+.++.. . .....++.++++++|+|+.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999998765 4 7999998875421 1 11123477899999999999974
No 325
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.42 E-value=0.022 Score=52.78 Aligned_cols=98 Identities=9% Similarity=0.192 Sum_probs=68.1
Q ss_pred ccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---------------------------c
Q 035615 76 KLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSVL---------------------------F 118 (223)
Q Consensus 76 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---------------------------~ 118 (223)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+.-..... .
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 488999999997 557789999999999999999987432110 0
Q ss_pred ccccChhhhhcCCcEEEEeccCChhhhhccCH-HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 035615 119 PYCANVYDLAVNSDVLVVCCALTEQTHHIINK-DVMAELGKGGMIINVGRGALIDEKEML 177 (223)
Q Consensus 119 ~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~-~~l~~mk~ga~lIN~arg~~vd~~al~ 177 (223)
....++++.++.+|+|+++....+ -+. ++- +..+.|++..+++|. |+- .|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence 113355788999999999987543 333 333 335567766688884 544 4665553
No 326
>PRK11579 putative oxidoreductase; Provisional
Probab=96.42 E-value=0.0058 Score=54.00 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=44.7
Q ss_pred CEEEEEecChHHHH-HHHHHHhC-CCEEE-EEcCCCCCCC----CcccccChhhhhc--CCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSE-VLNRLQAF-GFIIS-YNSRRKRPSV----LFPYCANVYDLAV--NSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~el~~--~aDiv~~~~p~t 141 (223)
.+|||||+|.||+. .+..++.. ++++. ++|++++... ....+.+++++++ +.|+|++++|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999999985 45655543 78865 5777654321 2234689999996 579999999854
No 327
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.41 E-value=0.0051 Score=55.22 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=33.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|.|+|.|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999999 57777765
No 328
>PRK08328 hypothetical protein; Provisional
Probab=96.41 E-value=0.011 Score=49.43 Aligned_cols=37 Identities=32% Similarity=0.361 Sum_probs=32.5
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56899999999999999999999999998 47777654
No 329
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.40 E-value=0.012 Score=53.70 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=68.9
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcC-CcEEEEec--c-C
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVN-SDVLVVCC--A-L 140 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~-aDiv~~~~--p-~ 140 (223)
++.|+++.|+|.|.+|.++|+.|...|++|.+.|+...... +.... ....+++.. .|+|+..- | .
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 36799999999999999999999999999999987543211 11111 122344444 89887754 2 2
Q ss_pred Chhh-------hhccCHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 141 TEQT-------HHIINKD-VMAEL-GKGGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 141 t~~t-------~~li~~~-~l~~m-k~ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
.+.. ..++.+. ++..+ +...+-|--+.|+.--..-+...|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 2211 1223332 22233 3345666677888888888888887633
No 330
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.40 E-value=0.0087 Score=51.73 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=65.8
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCc------------ccccC---hhhhhcCCcEEEEecc
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLF------------PYCAN---VYDLAVNSDVLVVCCA 139 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~------------~~~~~---l~el~~~aDiv~~~~p 139 (223)
++.++++.|+|.|..|++++-.|...|+ ++.+++|+.++.+.. ....+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4678999999999999999999999998 588999986543210 01111 2345677999999998
Q ss_pred CChhh-hh-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 140 LTEQT-HH-IINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 140 ~t~~t-~~-li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
..-.. .. .++. ..++++.++.++--.+ ..+.-|.+|-+.|
T Consensus 204 ~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 245 (283)
T PRK14027 204 MGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG 245 (283)
T ss_pred CCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence 54211 11 1322 3356677777776544 3333333433333
No 331
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.37 E-value=0.045 Score=47.95 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=67.9
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccC-----C
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCAL-----T 141 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~-----t 141 (223)
.+.|.+|+++|= +++.++++..+..+|+ +|.+..|..-... ......++++.++.+|+|...-=. .
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~ 233 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDN 233 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccc
Confidence 378999999996 6999999999999999 8988876542211 123357899999999999773210 0
Q ss_pred hh----h--hhccCHHHHhcCCCCcEEEEcCC
Q 035615 142 EQ----T--HHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 142 ~~----t--~~li~~~~l~~mk~ga~lIN~ar 167 (223)
+. . ...++++.++.+|++++|.-+.-
T Consensus 234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP 265 (310)
T PRK13814 234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGP 265 (310)
T ss_pred hhHHHHhCCCcccCHHHHHhcCCCCEEECCCC
Confidence 11 1 24568888888899999888763
No 332
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.34 E-value=0.0081 Score=53.18 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-C-c-----ccccC---hhhhhcCCcEEEE
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-L-F-----PYCAN---VYDLAVNSDVLVV 136 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~-~-----~~~~~---l~el~~~aDiv~~ 136 (223)
||||||-|..|+.+++.++.+|++|++++.++.... . + ..+.+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999999999999988754321 0 0 01233 6677888998754
No 333
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.006 Score=56.60 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccccc--cChhhhhcCCcEEEEeccCC---hhhh-
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYC--ANVYDLAVNSDVLVVCCALT---EQTH- 145 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~--~~l~el~~~aDiv~~~~p~t---~~t~- 145 (223)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|+.+.... +.... ....+.++.+|+|+.+-... |...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996533211 22111 12335567899888764222 2111
Q ss_pred ------hccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 146 ------HIINKDVMA-EL--------GKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 146 ------~li~~~~l~-~m--------k~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
.++++-.+. .+ +...+=|--+-|+.--..-+...|+..
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 123222221 11 112455666678888777788888763
No 334
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.32 E-value=0.019 Score=50.76 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|+||++||=+ ++.++.+..+..+|++|.+..|..-... + +....++++.++.+|+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999964 8899999999999999988876532110 1 22357899999999999875
Q ss_pred cc----C----Chh-----hhhccCHHHHhcCC-CCcEEEEcCC
Q 035615 138 CA----L----TEQ-----THHIINKDVMAELG-KGGMIINVGR 167 (223)
Q Consensus 138 ~p----~----t~~-----t~~li~~~~l~~mk-~ga~lIN~ar 167 (223)
.= . .++ ....++++.++.+| ++++|.-+.-
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP 275 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLP 275 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCC
Confidence 20 0 001 13456888999886 5898887764
No 335
>PRK07877 hypothetical protein; Provisional
Probab=96.32 E-value=0.016 Score=56.14 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=58.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCC----------C--C----------------c------
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPS----------V--L----------------F------ 118 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~----------~--~----------------~------ 118 (223)
..|++++|+|+|+| +|..+|..|...|. ++..+|...-.. . + .
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 45999999999999 99999999998884 666665332100 0 0 0
Q ss_pred ---ccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615 119 ---PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157 (223)
Q Consensus 119 ---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk 157 (223)
....+++++++.+|+|+-|+- +-+++.++++...+.-+
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI 222 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 011467788999999988875 66888898877766533
No 336
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.31 E-value=0.033 Score=48.69 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=68.6
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------------CC----cccccChhhhhcCCcEEEEeccCChh
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------------VL----FPYCANVYDLAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~----~~~~~~l~el~~~aDiv~~~~p~t~~ 143 (223)
++|.|+|.|.||.-++-+|...|..|..+.|.+... .+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 589999999999999999999997788887776410 01 011223345567899999998633 4
Q ss_pred hhhccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 144 THHIINKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
+...+ +.....+++.+.++-+-.|- =.++.+.+.....++.
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il 120 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVL 120 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEE
Confidence 44444 45666778887766554443 3344666666665444
No 337
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.012 Score=54.65 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=68.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEe--ccCC--
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVC--CALT-- 141 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~--~p~t-- 141 (223)
+.+++|.|+|+|..|.++|+.|+..|++|.++|....... +.... ....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999996543210 11111 1123456689999886 3332
Q ss_pred ---hhh-------hhccCH-HHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 142 ---EQT-------HHIINK-DVMA-EL--------GKGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 142 ---~~t-------~~li~~-~~l~-~m--------k~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
|.. ..++.+ +.+. .+ ++..+-|--+-|+.--..-|...|++....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 211 122222 2221 12 223455666678887777788888764443
No 338
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.28 E-value=0.023 Score=48.32 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCC----------CcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCc
Q 035615 91 GSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGG 160 (223)
Q Consensus 91 G~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga 160 (223)
|..+|-.+...|+.|+..+++..-.. +....++-.+..+.+.+.++-.|+.+.|.++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 56778788888999999988765432 33345566788999999999999998888875 67899999999
Q ss_pred EEEEcCCCcccCHHHHHHHH
Q 035615 161 MIINVGRGALIDEKEMLQFL 180 (223)
Q Consensus 161 ~lIN~arg~~vd~~al~~aL 180 (223)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999886654 455555
No 339
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.26 E-value=0.014 Score=52.76 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=54.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------cc----
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------FP---- 119 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~~---- 119 (223)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-... + ..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999999999999999998 4777764421100 0 00
Q ss_pred ----cccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615 120 ----YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154 (223)
Q Consensus 120 ----~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~ 154 (223)
...+..++++.+|+|+.|. .+..++.++|+-..+
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~ 155 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVL 155 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence 0122456788888887665 456677777765544
No 340
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.20 E-value=0.014 Score=53.12 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=56.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc----ccC---hh-hhhcCCcEEEEeccCC
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY----CAN---VY-DLAVNSDVLVVCCALT 141 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~----~~~---l~-el~~~aDiv~~~~p~t 141 (223)
+..+++.|+|+|.+|+.+++.|...|.+|++++++++... +... ..+ ++ .-+.++|.|+++.+..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 4568999999999999999999999999999987765321 1110 112 22 2357899998888754
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEc
Q 035615 142 EQTHHIINKDVMAELGKGGMIINV 165 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~ 165 (223)
..+ ++-....+.+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 332 2223333445544455543
No 341
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.02 Score=51.46 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=60.2
Q ss_pred cCCCEEEEEecC----------hHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccChhhhhcCCcEEEEeccCC
Q 035615 77 LGGMQVGIVRLG----------NIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 77 l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el~~~aDiv~~~~p~t 141 (223)
|.||||||+|+- .-...++++|+..|.+|.+|||...... +.....+++++++.||.++++...
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew- 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW- 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence 899999999963 4567889999999999999998754332 234568899999999999998753
Q ss_pred hhhhhccCHHHHhcCCCCcEEEE
Q 035615 142 EQTHHIINKDVMAELGKGGMIIN 164 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN 164 (223)
++-+.+ +-+.+ .||. .++++
T Consensus 387 ~ef~~~-d~~~~-~m~~-~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMKT-PVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hccC-CEEEe
Confidence 233332 33333 5663 45554
No 342
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.18 E-value=0.021 Score=50.53 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=66.4
Q ss_pred ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|++|++||-+ ++.++++..+..+|+++.+..|..-... + .....++++.++.+|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4889999999975 6899999999999999988876542111 1 22357899999999999875
Q ss_pred c--cCC-----------hhhhhccCHHHHhcC-CCCcEEEEcCC
Q 035615 138 C--ALT-----------EQTHHIINKDVMAEL-GKGGMIINVGR 167 (223)
Q Consensus 138 ~--p~t-----------~~t~~li~~~~l~~m-k~ga~lIN~ar 167 (223)
. ... ......++++.++.. |++++|.-+.-
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP 276 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLP 276 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCC
Confidence 2 000 011245678888874 78898887764
No 343
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.18 E-value=0.034 Score=50.77 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=67.0
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHHhC-CCEEEEEcCCCCCC-C---------C--cccccChhhhhcCCcEEEEecc
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQAF-GFIISYNSRRKRPS-V---------L--FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-~---------~--~~~~~~l~el~~~aDiv~~~~p 139 (223)
.+.|+||+++|- +++.++++..+..+ |++|.+..|..-.. . + +..+.++++.++.+|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 378999999997 58999999988876 99998887654321 1 1 2235789999999999987542
Q ss_pred CC-----hh-----hhhccCHHHHhc-CCCCcEEEEcC
Q 035615 140 LT-----EQ-----THHIINKDVMAE-LGKGGMIINVG 166 (223)
Q Consensus 140 ~t-----~~-----t~~li~~~~l~~-mk~ga~lIN~a 166 (223)
.. +. ....++++.++. .|++++|.-+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 11 10 124568899998 89999988665
No 344
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.17 E-value=0.012 Score=59.18 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=45.4
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhC-CCE-------------EEEEcCCCCCCC-------Cc---cc-ccChhhh---h
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAF-GFI-------------ISYNSRRKRPSV-------LF---PY-CANVYDL---A 128 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~el---~ 128 (223)
-+.++|+|||.|.||+..++.|... +++ |.+.|++.+... +. .. +.+.+++ +
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 3478999999999999999999754 333 777887754321 11 11 3344444 4
Q ss_pred cCCcEEEEeccCC
Q 035615 129 VNSDVLVVCCALT 141 (223)
Q Consensus 129 ~~aDiv~~~~p~t 141 (223)
+.+|+|++++|..
T Consensus 647 ~~~DaVIsalP~~ 659 (1042)
T PLN02819 647 SQVDVVISLLPAS 659 (1042)
T ss_pred cCCCEEEECCCch
Confidence 6899999999953
No 345
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.16 E-value=0.0095 Score=49.72 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=48.2
Q ss_pred CCCccccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Cccc-ccCh-hhhhcCCcEEEEecc
Q 035615 71 YPLGFKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFPY-CANV-YDLAVNSDVLVVCCA 139 (223)
Q Consensus 71 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~-~~~l-~el~~~aDiv~~~~p 139 (223)
++..-+++|++|.|||-|.++..=++.|..+|++|.++++...+.. .... ..+. .+.+..+++|+.++.
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD 94 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC
Confidence 3455678899999999999999988999999999999987654321 0100 0011 233567888877765
No 346
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.15 E-value=0.075 Score=48.58 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=61.8
Q ss_pred ccccCCCEEEEEec----------ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccChhh-hhcCCcEEEEeccC
Q 035615 74 GFKLGGMQVGIVRL----------GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LFPYCANVYD-LAVNSDVLVVCCAL 140 (223)
Q Consensus 74 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e-l~~~aDiv~~~~p~ 140 (223)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+.-.... .......+++ .++.+|.|++++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 34588999999997 56688999999999999999998732211 1000111222 36789999999875
Q ss_pred ChhhhhccCHHHH-hcCCCCcEEEEcCCCccc
Q 035615 141 TEQTHHIINKDVM-AELGKGGMIINVGRGALI 171 (223)
Q Consensus 141 t~~t~~li~~~~l-~~mk~ga~lIN~arg~~v 171 (223)
.+ -+. ++-+.+ +.||...++|+ +|+-+.
T Consensus 389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~~ 417 (425)
T PRK15182 389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVLP 417 (425)
T ss_pred HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCCC
Confidence 43 222 344444 34554468888 466553
No 347
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.12 E-value=0.078 Score=46.04 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=71.5
Q ss_pred CCEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCC--CCCCCCcccccChhhhhcC--CcEEEEeccCChhhhhccCHHH
Q 035615 79 GMQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRR--KRPSVLFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 79 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~ 152 (223)
..+|.|.|. |.+|+.+.+.|..+|++ ++.+++. .....+...+.+++|+-.. -|+.++++|. +.+...+ ++.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l-~e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI-LEA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH-HHH
Confidence 567999996 99999999999999986 4456766 4444566678899998887 8999999993 3344444 233
Q ss_pred HhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 035615 153 MAELGK-GGMIINVGRGALIDEKEMLQFLVQGDING 187 (223)
Q Consensus 153 l~~mk~-ga~lIN~arg~~vd~~al~~aL~~~~i~~ 187 (223)
.+ ..- .++++.-+- ..-|++.|.+..++..++-
T Consensus 86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girv 119 (291)
T PRK05678 86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTRL 119 (291)
T ss_pred HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEE
Confidence 32 232 334443332 3444458888888887763
No 348
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.09 E-value=0.06 Score=46.65 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCEEEEEec-ChHHHHHHHHHHhCCCE-EEEEcCC--CCCCCCcccccChhhhhcC--CcEEEEeccCChhhhhccCHHH
Q 035615 79 GMQVGIVRL-GNIGSEVLNRLQAFGFI-ISYNSRR--KRPSVLFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDV 152 (223)
Q Consensus 79 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~ 152 (223)
..+|.|.|. |.+|+.+-+.+.+.|++ |..+++. .....+...+.+++|+-.. .|+.++++|.. .+...+. +.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-EA 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-HH
Confidence 567999995 99999999999999987 3456666 3333466678899998876 69999999933 3444442 23
Q ss_pred HhcCC-CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 153 MAELG-KGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 153 l~~mk-~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
.+ .. +.++++.-+-++ -+++.|.+..++..++
T Consensus 84 ~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 84 ID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR 116 (286)
T ss_pred HH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence 32 22 233444333333 3677888888887766
No 349
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.08 E-value=0.018 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.7
Q ss_pred EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK 112 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~ 112 (223)
+|+|+|.|.+|..+++.|...|+. +..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999994 87777653
No 350
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.011 Score=54.68 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=69.6
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Cccccc--ChhhhhcCCcEEEEec--c-CChh
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYCA--NVYDLAVNSDVLVVCC--A-LTEQ 143 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~--~l~el~~~aDiv~~~~--p-~t~~ 143 (223)
..+.+++|.|+|+|..|+++|+.|...|++|.++|+...... +..... ...+.+.++|+|+..- | .+|.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~ 90 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL 90 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence 357899999999999999999999999999999997543211 221111 2234466789887763 2 2232
Q ss_pred hh-------hccCHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 144 TH-------HIINKDVMAE-------L-GK-GGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 144 t~-------~li~~~~l~~-------m-k~-ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
.. .++.+-.+.. + ++ ..+-|--+-|+.--..-|...|+...
T Consensus 91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 11 2233322321 1 12 24555666788888888888887644
No 351
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.07 E-value=0.07 Score=44.14 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=60.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c--cChhh-h----hcCCcEEEEeccCC
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C--ANVYD-L----AVNSDVLVVCCALT 141 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~~l~e-l----~~~aDiv~~~~p~t 141 (223)
..|.+|.|.|.|.+|+.+++.++..|.+|++.++++.... +... . .+..+ + -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 3588999999999999999999999999998887643211 0100 0 11111 1 24578888877532
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCCCcccC
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGRGALID 172 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~arg~~vd 172 (223)
. .-...++.|+++..+++++.....+
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~~~~~ 238 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGTSGGP 238 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccCCCCC
Confidence 1 1244567788888899888665433
No 352
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.06 E-value=0.024 Score=49.40 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=54.9
Q ss_pred EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCC-------------CC--CC-----------------cc--------
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKR-------------PS--VL-----------------FP-------- 119 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~-------------~~--~~-----------------~~-------- 119 (223)
+|.|+|.|.+|..+|+.|...|.. +..+|...- .. .+ ..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 589999999999999999999984 666653210 00 00 00
Q ss_pred -----------------cccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 120 -----------------YCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 120 -----------------~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
....++++++++|+|+.++ .+-+++.+++.-.... +..+|+.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence 0012467899999999988 5778888887554433 23566654
No 353
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.017 Score=53.35 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=68.3
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------Cccc--ccChhhhhcCCcEEEEec--c-CChh
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS-V-------LFPY--CANVYDLAVNSDVLVVCC--A-LTEQ 143 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------~~~~--~~~l~el~~~aDiv~~~~--p-~t~~ 143 (223)
+.|++|+|+|+|.-|.+.++.|...|++|+++|...... . .... .....+.+.++|+|+..- | ..|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 568999999999999999999999999999998543211 1 1000 111234567899887763 2 2222
Q ss_pred h-------hhccCHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 144 T-------HHIINKDV--MAE-LG-----KGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 144 t-------~~li~~~~--l~~-mk-----~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
. ..++++-. +.. ++ ...+-|--+.|+.--..-+...|+..
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 1 12344333 333 31 13566666778888888888888753
No 354
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.05 E-value=0.022 Score=49.69 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCEEEEEecChHHHHHHHHHHh-CCCEEE-EEcCCCCCC-------CCccc-ccChhhhhc-----CCcEEEEeccCChh
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQA-FGFIIS-YNSRRKRPS-------VLFPY-CANVYDLAV-----NSDVLVVCCALTEQ 143 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~el~~-----~aDiv~~~~p~t~~ 143 (223)
..++||||.|+||+..+..+.. -++++. +++++++.. .+... +.+.+++++ +.|+|+.++|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999997766654 366764 566655321 12222 467888884 58889999874322
Q ss_pred hhhccCHHHHhcCCCCcEEEEcC
Q 035615 144 THHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~a 166 (223)
. +-.....+.|..+|+-+
T Consensus 84 ~-----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V-----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-----HHHHHHHHcCCeEEECC
Confidence 1 11222346788888776
No 355
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.04 E-value=0.052 Score=47.89 Aligned_cols=106 Identities=12% Similarity=0.197 Sum_probs=63.8
Q ss_pred CEEEEEecChHHHHHHHHHHh--------CCCEEEE-EcCCCCCC--CC--------------cc-c-cc--Chhhhh-c
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA--------FGFIISY-NSRRKRPS--VL--------------FP-Y-CA--NVYDLA-V 129 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~--------~G~~V~~-~~~~~~~~--~~--------------~~-~-~~--~l~el~-~ 129 (223)
++|+|+|+|++|+.+++.+.. ++.+|.+ .|++.... .+ .. . .. ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999875 4667654 45432110 00 00 0 11 455554 4
Q ss_pred CCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 035615 130 NSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN 186 (223)
Q Consensus 130 ~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~ 186 (223)
++|+|+=+.|....-.... .-..+.|+.|.-+|-.+.|.+. .-+.|.++.++++..
T Consensus 81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 6899988887432101111 2234456788888888877775 456666666666554
No 356
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.00 E-value=0.035 Score=45.01 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=48.1
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCCC---c-------ccccChhhhhcCCcEEEEeccCC
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSVL---F-------PYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~-------~~~~~l~el~~~aDiv~~~~p~t 141 (223)
++|+|||. |++|+.+++-++..|++|..+-|++.+... . ....++.+.+..-|+|+.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58999995 999999999999999999999888765431 1 11234457788999999887433
No 357
>PRK08324 short chain dehydrogenase; Validated
Probab=95.99 E-value=0.0078 Score=58.11 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=61.8
Q ss_pred CCCccceEEEEccccchhHhHHHHHhcCCCCCCCcchHHHHHHHHHH-----HHHhCCcHHHHHHHcCCCCCCC----CC
Q 035615 1 MLCYQTNLYACILSEYQNWLKQLIKQKSIAKQADLPIVADLAIGLLI-----DFLRRISPGNWYVRAGLWAKTG----DY 71 (223)
Q Consensus 1 ~~~p~Lk~i~~~~aG~d~id~~~~~~~~i~~~~~~~~vAE~~~~~~l-----~~~r~~~~~~~~~~~~~w~~~~----~~ 71 (223)
|+-|+=+++-..+.|+-.++..... ..+.+ .+.+.++..++ .-+..++... ...-..|.... ..
T Consensus 342 ~~~~~p~~~l~~g~g~~~~g~~~~~-a~~~~-----d~~~~~~~~~~~a~~~~~~~~l~~~~-~f~i~~~~~e~a~l~~~ 414 (681)
T PRK08324 342 MLDPNPRVVLIPGLGMFSFGKDKKT-ARVAA-----DIYENAINVMRGAEAVGRYEPLSEQE-AFDIEYWSLEQAKLQRM 414 (681)
T ss_pred ccCCCCeEEEECCCceEEeCCCHHH-hhhhH-----HHHHHHHHHHhhhhhcCCccCCChhh-hcceeeehhhhhhhhcC
Confidence 5678888888888888776654311 11111 12233333222 2222222211 11112332110 00
Q ss_pred CCccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 72 PLGFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 72 ~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+....+.|+++.|.| .|.||+.+++.|...|++|+..+|+..
T Consensus 415 ~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 415 PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 123457899999999 599999999999999999999988764
No 358
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.95 E-value=0.1 Score=39.90 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=28.2
Q ss_pred EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRK 112 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~ 112 (223)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999999 588887653
No 359
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.94 E-value=0.022 Score=44.38 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=53.8
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCc---ccccChhhhhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLF---PYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
..|++|++||+= +.++++++..+.++.++|+++...... ......++++++||+|+++-. | -..+-+ .+.+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs-T-lvN~Ti-~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS-T-LVNGTI-DDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH-H-CCTTTH-HHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee-e-eecCCH-HHHH
Confidence 469999999961 237778888889999999988543221 133466789999999988642 0 011112 3566
Q ss_pred hcCCCCcEEEEcCC
Q 035615 154 AELGKGGMIINVGR 167 (223)
Q Consensus 154 ~~mk~ga~lIN~ar 167 (223)
+..+++..++=+|-
T Consensus 83 ~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 83 ELARNAREVILYGP 96 (147)
T ss_dssp HHTTTSSEEEEESC
T ss_pred HhCccCCeEEEEec
Confidence 66776666666654
No 360
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.93 E-value=0.075 Score=40.86 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCEEEEEcCCCCCC---------CCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEE
Q 035615 93 EVLNRLQAFGFIISYNSRRKRPS---------VLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMII 163 (223)
Q Consensus 93 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lI 163 (223)
..+++|...|++|++=.-..... .++....+.++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 45678888899998765443221 13333456669999999998765532 56778899999999
Q ss_pred EcCCCcccCHHHHHHHHHcCCceEEEeeCCCC
Q 035615 164 NVGRGALIDEKEMLQFLVQGDINGVGLDVFEN 195 (223)
Q Consensus 164 N~arg~~vd~~al~~aL~~~~i~~a~lDV~~~ 195 (223)
-...-. ....+++.|.++++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 776554 588899999999999888876544
No 361
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.91 E-value=0.019 Score=49.39 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCccc--ccChh-hh-hcCCcEEEEeccCChh--h---hhcc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPY--CANVY-DL-AVNSDVLVVCCALTEQ--T---HHII 148 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~--~~~l~-el-~~~aDiv~~~~p~t~~--t---~~li 148 (223)
++++.|+|.|..+++++..|...|+ +|.+++|+.++.+.... ..+.. ++ ...+|+|+.++|..-. . ...+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi 201 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF 201 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence 5789999999999999999999998 49999998754331110 01111 11 2458999999984311 1 0123
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 149 NKDVMAELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 149 ~~~~l~~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
+. ..++++.+++++--.+ .+ ..|+++-++.
T Consensus 202 ~~---~~l~~~~~v~D~vY~P-~~-T~ll~~A~~~ 231 (272)
T PRK12550 202 PE---AEIDAASVVFDVVALP-AE-TPLIRYARAR 231 (272)
T ss_pred CH---HHcCCCCEEEEeecCC-cc-CHHHHHHHHC
Confidence 33 3456777888886655 23 3344444443
No 362
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.89 E-value=0.025 Score=50.00 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCEEEEEe-cChHHHHHHHHHHhCCC---EEEEEcCCCCCCC--Cc----ccccChh-hhhcCCcEEEEeccCChhhhhc
Q 035615 79 GMQVGIVR-LGNIGSEVLNRLQAFGF---IISYNSRRKRPSV--LF----PYCANVY-DLAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 79 g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~--~~----~~~~~l~-el~~~aDiv~~~~p~t~~t~~l 147 (223)
+++|+|+| .|.+|+.+.+.|...|+ ++.+..+...... .. ....+++ +.++.+|+|++++|.. .+..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 46899999 59999999999998665 3455543322211 10 1112222 3357899999999844 23332
Q ss_pred cCHHHHhcCCCCcEEEEcCC
Q 035615 148 INKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~ar 167 (223)
. .+ .++.|+++|+.|.
T Consensus 80 ~-~~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PK---AAAAGAVVIDNSS 95 (334)
T ss_pred H-HH---HHhCCCEEEECCc
Confidence 2 11 2356889998773
No 363
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.88 E-value=0.0089 Score=48.35 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=44.8
Q ss_pred CEEEEEecChHHHHHHHH--HHhCCCEEE-EEcCCCCCCC----C--cccccChhhhhc--CCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSEVLNR--LQAFGFIIS-YNSRRKRPSV----L--FPYCANVYDLAV--NSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~----~--~~~~~~l~el~~--~aDiv~~~~p~t 141 (223)
.++.|||.|++|++++.. .+..||++. ++|..++..- + ....+++++.++ +.|+.++|+|..
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 469999999999999874 357899864 7887665321 1 123456777777 678999999943
No 364
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.88 E-value=0.034 Score=48.77 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Ccccc-----cChhhhhc---CCcEEEEeccCChh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPYC-----ANVYDLAV---NSDVLVVCCALTEQ 143 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~-----~~l~el~~---~aDiv~~~~p~t~~ 143 (223)
.|++|.|+|.|.+|...++.++..|. +|++.++++++.+ ++... .++.++.. ..|+++-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58999999999999999999999999 5888877654422 22111 12334332 268888876522 1
Q ss_pred hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 144 THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
+ + ...++.++++..++.++.
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 356778899999998875
No 365
>PRK05086 malate dehydrogenase; Provisional
Probab=95.88 E-value=0.038 Score=48.41 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred CEEEEEec-ChHHHHHHHHHHh---CCCEEEEEcCCCCCC----C--Ccc---c-----ccChhhhhcCCcEEEEeccC-
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQA---FGFIISYNSRRKRPS----V--LFP---Y-----CANVYDLAVNSDVLVVCCAL- 140 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~---~G~~V~~~~~~~~~~----~--~~~---~-----~~~l~el~~~aDiv~~~~p~- 140 (223)
++|+|||. |.||+.++..+.. .+.++..+++.+... + ... . ..++.+.++.+|+|++++-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 9999999987743 455788888764331 1 101 0 13556778999999999743
Q ss_pred -Chh-hh-hcc------CHHH---HhcCCCCcEEEEcCCCc
Q 035615 141 -TEQ-TH-HII------NKDV---MAELGKGGMIINVGRGA 169 (223)
Q Consensus 141 -t~~-t~-~li------~~~~---l~~mk~ga~lIN~arg~ 169 (223)
.+. ++ .++ -.+. +....+.+++++++.--
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 111 11 111 1222 33335678999986544
No 366
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.84 E-value=0.019 Score=50.13 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=46.3
Q ss_pred CCEEEEEecChHHH-HHHHHHHhCC--CE-EEEEcCCCCCCC------Cc-ccccChhhhhcC--CcEEEEeccCC
Q 035615 79 GMQVGIVRLGNIGS-EVLNRLQAFG--FI-ISYNSRRKRPSV------LF-PYCANVYDLAVN--SDVLVVCCALT 141 (223)
Q Consensus 79 g~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~~------~~-~~~~~l~el~~~--aDiv~~~~p~t 141 (223)
-.++||||+|.+++ ..+..++..+ ++ |.++|+++.... +. ..+.+++++++. -|+|++++|..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 35899999997775 4777887766 45 456788876532 22 357889999986 58999999954
No 367
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.80 E-value=0.071 Score=47.62 Aligned_cols=92 Identities=10% Similarity=0.129 Sum_probs=64.4
Q ss_pred ccCCCEEEEEecC--------hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCC
Q 035615 76 KLGGMQVGIVRLG--------NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNS 131 (223)
Q Consensus 76 ~l~g~~vgIiG~G--------~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~a 131 (223)
.|+|+||+|+|.| ++.++++..+..+|++|.+..|..-.. . + +....++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 455778888899999999887753211 0 1 12357899999999
Q ss_pred cEEEEec----c----------CCh-----------------hhhhccCHHHHhcCC-CCcEEEEcCC
Q 035615 132 DVLVVCC----A----------LTE-----------------QTHHIINKDVMAELG-KGGMIINVGR 167 (223)
Q Consensus 132 Div~~~~----p----------~t~-----------------~t~~li~~~~l~~mk-~ga~lIN~ar 167 (223)
|+|..-. . ..+ .....++++.++.+| ++++|..+.-
T Consensus 247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP 314 (357)
T TIGR03316 247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLP 314 (357)
T ss_pred CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCC
Confidence 9998763 1 000 012346888888888 8888887753
No 368
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.78 E-value=0.034 Score=48.76 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCEEEEEe-cChHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC
Q 035615 79 GMQVGIVR-LGNIGSEVLNRLQAFGF-IISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL 156 (223)
Q Consensus 79 g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m 156 (223)
..+|+||| .|-.|+.+.+.|..... ++.....+.... . .+.++.++++|++++++|.... ..+. .+. .
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--~---~~~~~~~~~~DvvFlalp~~~s-~~~~-~~~---~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--A---AARRELLNAADVAILCLPDDAA-REAV-ALI---D 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--c---cCchhhhcCCCEEEECCCHHHH-HHHH-HHH---H
Confidence 35899999 69999999999987643 555443332221 1 2345667889999999995422 2221 111 2
Q ss_pred CCCcEEEEcC
Q 035615 157 GKGGMIINVG 166 (223)
Q Consensus 157 k~ga~lIN~a 166 (223)
+.|+.+||.|
T Consensus 72 ~~g~~VIDlS 81 (313)
T PRK11863 72 NPATRVIDAS 81 (313)
T ss_pred hCCCEEEECC
Confidence 4688899888
No 369
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.78 E-value=0.038 Score=48.04 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=55.3
Q ss_pred EEEEecChHHHHHHHHHHhCC--CEEEEEcCCCCCCC----------Cc----ccc-cChhhhhcCCcEEEEeccCCh--
Q 035615 82 VGIVRLGNIGSEVLNRLQAFG--FIISYNSRRKRPSV----------LF----PYC-ANVYDLAVNSDVLVVCCALTE-- 142 (223)
Q Consensus 82 vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~----------~~----~~~-~~l~el~~~aDiv~~~~p~t~-- 142 (223)
|+|||.|.+|..+|-.+...| .++..+|+...... .. ... .+-.+.++.||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 589999999999999998877 47999998765322 10 001 121467899999999985321
Q ss_pred h-hh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615 143 Q-TH--------HIIN--KDVMAELGKGGMIINVG 166 (223)
Q Consensus 143 ~-t~--------~li~--~~~l~~mk~ga~lIN~a 166 (223)
. ++ .++. .+.+....|.+++|+++
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 11 1111 12334445789999987
No 370
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.76 E-value=0.077 Score=46.52 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=49.0
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------CcccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------LFPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|+||++||- +++.++++..+..+|++|.+..|..-... ......++++.++.+|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999996 79999999999999999998887542100 112257899999999999884
No 371
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.76 E-value=0.027 Score=51.72 Aligned_cols=108 Identities=13% Similarity=0.197 Sum_probs=70.1
Q ss_pred cCCCEEEEEecChHHHH-HHHHHHhCCCEEEEEcCCCCCCC------Ccccc-cChhhhhcCCcEEEEec--c-CChhhh
Q 035615 77 LGGMQVGIVRLGNIGSE-VLNRLQAFGFIISYNSRRKRPSV------LFPYC-ANVYDLAVNSDVLVVCC--A-LTEQTH 145 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~~------~~~~~-~~l~el~~~aDiv~~~~--p-~t~~t~ 145 (223)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|....... +.... ....+.+..+|+|+..- | .+|...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 79999999999999997653211 11111 11234456799887763 2 222221
Q ss_pred -------hccCH-HHHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 146 -------HIINK-DVMAE-LG-KGGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 146 -------~li~~-~~l~~-mk-~ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
.++++ +++.. ++ ...+-|--+.|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23443 33333 33 235666777899888888888887654
No 372
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.76 E-value=0.02 Score=49.80 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=44.9
Q ss_pred CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc-------ccccChhhhhcCCcEEEEecc
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF-------PYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~el~~~aDiv~~~~p 139 (223)
++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.. +. ....++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 599999999999999999998888653221 11 112346677899999887653
No 373
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.73 E-value=0.023 Score=50.05 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCC---CCCCC-----Ccccc----cChhh--hhcCCcEEEEeccCChh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRR---KRPSV-----LFPYC----ANVYD--LAVNSDVLVVCCALTEQ 143 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~---~~~~~-----~~~~~----~~l~e--l~~~aDiv~~~~p~t~~ 143 (223)
.|.+|.|+|.|.+|...++.++..|++|++.+++ +++.+ ++... .++.+ .....|+|+-++... .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~ 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence 5889999999999999999999999999988873 22211 21111 11111 223579998887522 1
Q ss_pred hhhccCHHHHhcCCCCcEEEEcCC
Q 035615 144 THHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 144 t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+ .+.++.++++..++.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 456778899988888764
No 374
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.73 E-value=0.024 Score=49.14 Aligned_cols=85 Identities=16% Similarity=0.056 Sum_probs=54.7
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCCCcc--cccChhh-hhcCCcEEEEeccCChhhhhccCHHHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSVLFP--YCANVYD-LAVNSDVLVVCCALTEQTHHIINKDVM 153 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-l~~~aDiv~~~~p~t~~t~~li~~~~l 153 (223)
.++++.|+|.|.+|...++.++.+|++ |++.++...+...+. ...+..+ .-...|+|+-++... .+ + ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-SL---I-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-HH---H-HHHH
Confidence 477899999999999999999999998 555665543322111 1111111 123578888777522 11 2 3466
Q ss_pred hcCCCCcEEEEcCC
Q 035615 154 AELGKGGMIINVGR 167 (223)
Q Consensus 154 ~~mk~ga~lIN~ar 167 (223)
+.++++..++.++-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 77888888887763
No 375
>PRK04148 hypothetical protein; Provisional
Probab=95.73 E-value=0.019 Score=44.06 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=46.6
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------Ccc---cccChhhhhcCCcEEEEeccC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------LFP---YCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~el~~~aDiv~~~~p~ 140 (223)
+++++..||+| -|..+|+.|+..|++|++.|.++...+ .+. .+..-.++.+.+|+|-..-|-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 46889999999 999999999999999999998876432 111 122334677888888777763
No 376
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.72 E-value=0.038 Score=48.35 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=50.9
Q ss_pred CEEEEEec-ChHHHHHHHHHHhC-CCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHhcCC
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAF-GFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMAELG 157 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk 157 (223)
-+|+|+|. |-.|..+.++|... .+++........ + ...+.+++++++|++++++|.. ....+. .. + .+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~-~~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~-~--~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K-DAAERAKLLNAADVAILCLPDD-AAREAV-SL-V--DN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c-CcCCHhHhhcCCCEEEECCCHH-HHHHHH-HH-H--Hh
Confidence 37999995 99999999999875 446554432221 1 1124567778999999999954 223222 11 1 24
Q ss_pred CCcEEEEcC
Q 035615 158 KGGMIINVG 166 (223)
Q Consensus 158 ~ga~lIN~a 166 (223)
.|+.+||.|
T Consensus 72 ~g~~VIDlS 80 (310)
T TIGR01851 72 PNTCIIDAS 80 (310)
T ss_pred CCCEEEECC
Confidence 688899888
No 377
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.72 E-value=0.29 Score=47.88 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=72.4
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCCC----C---CCC----c---ccccChhhhhcCCcEEE
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRKR----P---SVL----F---PYCANVYDLAVNSDVLV 135 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~----~---~~~----~---~~~~~l~el~~~aDiv~ 135 (223)
.+..+...+|.|.|.|.-|-.+++.+...|. +++.+|+..- . ... + ....+|.|+++.+|+++
T Consensus 179 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~i 258 (752)
T PRK07232 179 VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFL 258 (752)
T ss_pred hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEE
Confidence 3467899999999999999999999999998 6888776531 1 110 1 12358999999999776
Q ss_pred EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~ 170 (223)
= +. +-++|+++.++.|.+..++.=.|.-..
T Consensus 259 G-~s----~~g~~~~~~v~~M~~~piifalsNP~~ 288 (752)
T PRK07232 259 G-LS----AAGVLTPEMVKSMADNPIIFALANPDP 288 (752)
T ss_pred E-cC----CCCCCCHHHHHHhccCCEEEecCCCCc
Confidence 4 32 258999999999999999999888775
No 378
>PRK12862 malic enzyme; Reviewed
Probab=95.72 E-value=0.21 Score=48.92 Aligned_cols=93 Identities=11% Similarity=0.191 Sum_probs=72.2
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCC-----CC--CC----Cc---ccccChhhhhcCCcEEE
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRK-----RP--SV----LF---PYCANVYDLAVNSDVLV 135 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~-----~~--~~----~~---~~~~~l~el~~~aDiv~ 135 (223)
.++.++..+|.|.|.|.-|-.+|+.+...|. +++.+|+.. +. .. .+ ....+|.|+++.+|+++
T Consensus 187 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~i 266 (763)
T PRK12862 187 VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFL 266 (763)
T ss_pred hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEE
Confidence 3567899999999999999999999999998 688888542 11 11 00 12357999999999876
Q ss_pred EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~ 170 (223)
= +. +-++|+++.++.|.+..++.=.|.-..
T Consensus 267 G-~s----~~g~~~~~~v~~M~~~piifalsNP~~ 296 (763)
T PRK12862 267 G-LS----AAGVLKPEMVKKMAPRPLIFALANPTP 296 (763)
T ss_pred E-cC----CCCCCCHHHHHHhccCCEEEeCCCCcc
Confidence 4 32 257899999999999999999888764
No 379
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.71 E-value=0.11 Score=47.06 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=83.3
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCCCCCC--------Cccc---------ccChhhhhcCCc
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRKRPSV--------LFPY---------CANVYDLAVNSD 132 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~--------~~~~---------~~~l~el~~~aD 132 (223)
.++.|+..+|.+.|.|.-|-++++.+++.|+ +|+.+|+..--.+ .... ... ++.+..+|
T Consensus 193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad 271 (432)
T COG0281 193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD 271 (432)
T ss_pred hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence 4677999999999999999999999999999 4888887632110 0000 011 44678899
Q ss_pred EEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-CceEEEeeCCCCCCCCCCCCCCCCceE
Q 035615 133 VLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL-IDEKEMLQFLVQG-DINGVGLDVFENDPNVPKEPLRLDNIV 210 (223)
Q Consensus 133 iv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~-vd~~al~~aL~~~-~i~~a~lDV~~~EP~~~~~l~~~~nv~ 210 (223)
+++=+- ..+.|.++.++.|.+..++.=.|.-.. +..+++.+ ...+ .|.+ + .-|..| -+..|++
T Consensus 272 v~iG~S-----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~-~~~~aaiva-----T-Grsd~P---nQvNNvL 336 (432)
T COG0281 272 VLIGVS-----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKE-WGDGAAIVA-----T-GRSDYP---NQVNNVL 336 (432)
T ss_pred EEEEcC-----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhh-cCCCCEEEE-----e-CCCCCc---cccccee
Confidence 876542 238999999999999999998887653 22222222 1111 2321 1 222111 1677899
Q ss_pred EccCCC
Q 035615 211 LLPCQN 216 (223)
Q Consensus 211 ~TPH~a 216 (223)
+-|-+.
T Consensus 337 ~FPgIf 342 (432)
T COG0281 337 IFPGIF 342 (432)
T ss_pred Ecchhh
Confidence 888764
No 380
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.022 Score=52.38 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------cccccChhhhhcCCcEEEEec--c-CChhhh--
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVL-------FPYCANVYDLAVNSDVLVVCC--A-LTEQTH-- 145 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-------~~~~~~l~el~~~aDiv~~~~--p-~t~~t~-- 145 (223)
.|++|+|+|+|.-|.++++.|+. |++|+++|........ ........+.+.++|+|+..- | .+|...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 48899999999999999999995 9999999854332110 000011234567899887763 2 222211
Q ss_pred -----hccCHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 035615 146 -----HIINKD-VM-AELGK-GGMIINVGRGALIDEKEMLQFLVQGD 184 (223)
Q Consensus 146 -----~li~~~-~l-~~mk~-ga~lIN~arg~~vd~~al~~aL~~~~ 184 (223)
.++++- ++ ..++. ..+=|--+.|+.--..-+...|+...
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 233332 32 33332 24555666788888888888888633
No 381
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.70 E-value=0.0073 Score=44.80 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=58.1
Q ss_pred ecChHHHHHHHHHHhC----CCEEE-EEcCCC--CCC-----CCcccccChhhhhc--CCcEEEEeccCChhhhhccCHH
Q 035615 86 RLGNIGSEVLNRLQAF----GFIIS-YNSRRK--RPS-----VLFPYCANVYDLAV--NSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 86 G~G~iG~~~a~~l~~~----G~~V~-~~~~~~--~~~-----~~~~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~~ 151 (223)
|+|.||+.+++.+... ++++. +++++. ... .......++++++. ..|+|+=|.+..+.. +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999865 67765 556661 111 12234678999988 899999885532222 22
Q ss_pred HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHcCCc
Q 035615 152 VMAELGKGGMIINVGRGALI---DEKEMLQFLVQGDI 185 (223)
Q Consensus 152 ~l~~mk~ga~lIN~arg~~v---d~~al~~aL~~~~i 185 (223)
..+.|+.|.-+|-.+-+.+. ..+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 34556788899999888888 33445555554443
No 382
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.70 E-value=0.038 Score=50.26 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=53.0
Q ss_pred ccccCCCEEEEEec----------ChHHHHHHHHHHhCC-CEEEEEcCCCCCCC----CcccccChhhhhcCCcEEEEec
Q 035615 74 GFKLGGMQVGIVRL----------GNIGSEVLNRLQAFG-FIISYNSRRKRPSV----LFPYCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 74 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDiv~~~~ 138 (223)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+||+.-.... ......++++.++.+|.|+++.
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45688999999997 456789999999996 99999998743321 1123468889999999999998
Q ss_pred cCC
Q 035615 139 ALT 141 (223)
Q Consensus 139 p~t 141 (223)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 754
No 383
>PLN02602 lactate dehydrogenase
Probab=95.70 E-value=0.03 Score=49.90 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=56.4
Q ss_pred CEEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC-------------cccc---cChhhhhcCCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL-------------FPYC---ANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-------------~~~~---~~l~el~~~aDiv~~~~p~t 141 (223)
++|+|||.|.+|..+|-.+...|. ++..+|.......+ .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999886665 68889986653321 0111 233 4489999999986321
Q ss_pred --h-hhh-hcc--C-------HHHHhcCCCCcEEEEcC
Q 035615 142 --E-QTH-HII--N-------KDVMAELGKGGMIINVG 166 (223)
Q Consensus 142 --~-~t~-~li--~-------~~~l~~mk~ga~lIN~a 166 (223)
+ +++ .++ | .+.+....|.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 122 122 1 12334456788999987
No 384
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.032 Score=50.94 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=69.1
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEecc---CCh
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVCCA---LTE 142 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~~p---~t~ 142 (223)
+.++++.|+|.|.+|.++|+.|...|++|.++|....... +.... ...++.+..+|+|+..-- ..|
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 5689999999999999999999999999999986554310 11111 112334568999887642 223
Q ss_pred hhh-------hccC-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 035615 143 QTH-------HIIN-KDVMAE-LG---KGGMIINVGRGALIDEKEMLQFLVQGDI 185 (223)
Q Consensus 143 ~t~-------~li~-~~~l~~-mk---~ga~lIN~arg~~vd~~al~~aL~~~~i 185 (223)
... .++. .+++.. ++ ...+-|--+.|+.--..-+...|+....
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 221 1222 233333 32 2355666667888877778888876443
No 385
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.67 E-value=0.079 Score=46.98 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHH-hCCCEEEEEcCCCCCCC------------CcccccChhhhhcCCcEEEEecc
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQ-AFGFIISYNSRRKRPSV------------LFPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~------------~~~~~~~l~el~~~aDiv~~~~p 139 (223)
.+.|+||+++|= +++..+.+..+. -+|++|.+..|..-... .+....++++.++.+|+|....-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI 235 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence 588999999997 588888888766 44999988876542211 12235789999999999988421
Q ss_pred CC------hh-----hhhccCHHHH-hcCCCCcEEEEcCC
Q 035615 140 LT------EQ-----THHIINKDVM-AELGKGGMIINVGR 167 (223)
Q Consensus 140 ~t------~~-----t~~li~~~~l-~~mk~ga~lIN~ar 167 (223)
-. +. -...++++.+ +.+|++++|.-+.-
T Consensus 236 q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP 275 (338)
T PRK08192 236 QEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLP 275 (338)
T ss_pred ccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCC
Confidence 10 11 1145677777 45889999887763
No 386
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.62 E-value=0.05 Score=48.34 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=50.6
Q ss_pred CCCEEEEEe-cChHHHHHHHHHHhCCC---EEEEE-c-CCCCCCCCc--c--cccChh-hhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVR-LGNIGSEVLNRLQAFGF---IISYN-S-RRKRPSVLF--P--YCANVY-DLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~-~-~~~~~~~~~--~--~~~~l~-el~~~aDiv~~~~p~t~~t~~ 146 (223)
...+|+|+| .|.+|+.+.+.|...++ ++.+. + ++..+.... . .+.+++ +.+..+|+|++++|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 357899999 59999999999988555 34333 2 222111111 0 112222 4458899999999854 2222
Q ss_pred ccCHHHHhc-CCCCcEEEEcC
Q 035615 147 IINKDVMAE-LGKGGMIINVG 166 (223)
Q Consensus 147 li~~~~l~~-mk~ga~lIN~a 166 (223)
+ ... .+.|+.+||.|
T Consensus 85 ~-----~~~~~~~g~~VIDlS 100 (344)
T PLN02383 85 F-----GPIAVDKGAVVVDNS 100 (344)
T ss_pred H-----HHHHHhCCCEEEECC
Confidence 2 222 25688899888
No 387
>PLN00106 malate dehydrogenase
Probab=95.61 E-value=0.043 Score=48.34 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=58.9
Q ss_pred CCCEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCC---C------Ccc-----cccChhhhhcCCcEEEEeccC
Q 035615 78 GGMQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPS---V------LFP-----YCANVYDLAVNSDVLVVCCAL 140 (223)
Q Consensus 78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~---~------~~~-----~~~~l~el~~~aDiv~~~~p~ 140 (223)
..++|+|+|. |++|..+|..|...+. ++..+|..+... + ... ...++.+.++.||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4579999999 9999999999985554 788888765211 1 001 123346789999999998632
Q ss_pred --Ch-hhhh-cc--C----H---HHHhcCCCCcEEEEcCCCc
Q 035615 141 --TE-QTHH-II--N----K---DVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 141 --t~-~t~~-li--~----~---~~l~~mk~ga~lIN~arg~ 169 (223)
.+ .++. ++ | . +.+....+.+++++++.--
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1121 11 1 1 2333345789999987654
No 388
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.59 E-value=0.09 Score=46.54 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=67.1
Q ss_pred ccCCCEEEEEecC--hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCCcEEEEe
Q 035615 76 KLGGMQVGIVRLG--NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 76 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~aDiv~~~ 137 (223)
.+.|++|+++|-+ ++.++++..+..+|++|.+..|..-.. . + +....++++.++.+|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 789999999999999998887654211 0 1 22357899999999999875
Q ss_pred c------cCC--hh-----hhhccCHHHHhcC-CCCcEEEEcCCC
Q 035615 138 C------ALT--EQ-----THHIINKDVMAEL-GKGGMIINVGRG 168 (223)
Q Consensus 138 ~------p~t--~~-----t~~li~~~~l~~m-k~ga~lIN~arg 168 (223)
. ... ++ -..-++++.++.. |++++|.-+.-.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~ 277 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPA 277 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCC
Confidence 4 100 01 1245688888885 789999887643
No 389
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.57 E-value=0.034 Score=49.06 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred EEEEEecChHHHHHHHHHHhCC----CEEEEEc
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFG----FIISYNS 109 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~ 109 (223)
+|||+|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5899999999999999987653 7776554
No 390
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.56 E-value=0.024 Score=49.25 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=67.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------------Cccc----------ccChh
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------------LFPY----------CANVY 125 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~~~----------~~~l~ 125 (223)
-..+..++-++|+|-.|-..+...+..|+-|..++-.+...+ ++.. ..-+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 346778899999999999999999999999988775442211 1111 12234
Q ss_pred hhhcCCcEEEEec--cCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 126 DLAVNSDVLVVCC--ALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 126 el~~~aDiv~~~~--p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
+..++.|+|+... |..|. -.++.++..+.||||+++|+.+
T Consensus 240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 5678999998764 54443 4578899999999999999986
No 391
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.55 E-value=0.07 Score=46.65 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=42.6
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCC--CCCC-------------Cc-cc--c-cChhhhhcCCcEEEEe
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRK--RPSV-------------LF-PY--C-ANVYDLAVNSDVLVVC 137 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~--~~~~-------------~~-~~--~-~~l~el~~~aDiv~~~ 137 (223)
++|+|+|. |.+|..++..+...|. +|+.+|+.. .... .. .. . .+ .+.++.||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 58999997 9999999999988776 488888844 2211 00 01 1 23 3458999999999
Q ss_pred cc
Q 035615 138 CA 139 (223)
Q Consensus 138 ~p 139 (223)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 392
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.059 Score=44.57 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=32.1
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK 112 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 112 (223)
+.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 9999999999999999998877754
No 393
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.49 E-value=0.13 Score=46.54 Aligned_cols=92 Identities=10% Similarity=0.177 Sum_probs=65.7
Q ss_pred ccCCCEEEEEec-----C---hHHHHHHHHHHhCCCEEEEEcCCCCCC-C-------------C--cccccChhhhhcCC
Q 035615 76 KLGGMQVGIVRL-----G---NIGSEVLNRLQAFGFIISYNSRRKRPS-V-------------L--FPYCANVYDLAVNS 131 (223)
Q Consensus 76 ~l~g~~vgIiG~-----G---~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~el~~~a 131 (223)
.+.|+||+|+|- | ++.++++..+..+|++|.+..|..-.. . + +....++++.++.+
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 567899999999999999888753211 0 1 22357899999999
Q ss_pred cEEEEeccC-----C---------h-----------------hhhhccCHHHHhcCCCC-cEEEEcCC
Q 035615 132 DVLVVCCAL-----T---------E-----------------QTHHIINKDVMAELGKG-GMIINVGR 167 (223)
Q Consensus 132 Div~~~~p~-----t---------~-----------------~t~~li~~~~l~~mk~g-a~lIN~ar 167 (223)
|+|..-.=. . + ....-++++.++..|++ ++|.-+.-
T Consensus 264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLP 331 (395)
T PRK07200 264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLP 331 (395)
T ss_pred CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCC
Confidence 999876300 0 0 12234678888888885 88888764
No 394
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.48 E-value=0.045 Score=46.65 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=56.1
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Ccccc---cChhh----hh--cCCcEEEEeccCCh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPYC---ANVYD----LA--VNSDVLVVCCALTE 142 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~~---~~l~e----l~--~~aDiv~~~~p~t~ 142 (223)
.|.+|.|+|.|.+|...++.++.+|.+ |++.++++++.+ ++... .+..+ +. ...|+++-++....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 589999999999999999999999997 877776654321 22111 11111 11 24788887664221
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+ ...++.++++..++.++-
T Consensus 200 ----~~-~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 200 ----AV-RACLESLDVGGTAVLAGS 219 (280)
T ss_pred ----HH-HHHHHHhcCCCEEEEecc
Confidence 12 345677888888888773
No 395
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.40 E-value=0.068 Score=46.28 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=51.9
Q ss_pred CEEEEEecChHHHHHHHHHHh-CCCEEE-EEcCCCCCCC-------Ccc-cccChhhhhc--CCcEEEEeccCChhhhhc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA-FGFIIS-YNSRRKRPSV-------LFP-YCANVYDLAV--NSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~-------~~~-~~~~l~el~~--~aDiv~~~~p~t~~t~~l 147 (223)
.+|||||.|+||+..+..+.. -++++. +++++++... +.. .+.+.++++. +-|+|+++.|.....+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 479999999999988766654 467765 5666554311 222 2457888875 5788999998442211
Q ss_pred cCHHHHhcCCCCcEEEEcCC
Q 035615 148 INKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~ar 167 (223)
.....++.|..+|+-.-
T Consensus 80 ---~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 80 ---HARLLAELGKIVIDLTP 96 (285)
T ss_pred ---HHHHHHHcCCEEEECCc
Confidence 12233456666665543
No 396
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.034 Score=50.84 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------Ccccc--cChhhhhcCCcEEEEec--c-CChh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYC--ANVYDLAVNSDVLVVCC--A-LTEQ 143 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~aDiv~~~~--p-~t~~ 143 (223)
++-+++|+|+|.+|.++|+.|...|++|.++|....... +.... ..-.+.+.++|+|+..- | .+|.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 356899999999999999999999999999996543210 11111 11234466889887653 2 2222
Q ss_pred hh-------hccCH-HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 144 TH-------HIINK-DVMA-ELGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 144 t~-------~li~~-~~l~-~mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
.. .++.+ +++. .++...+-|--+.|+.--..-+...|+..
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 11 13332 2332 23434566666688888888888888763
No 397
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.39 E-value=0.1 Score=46.20 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=53.1
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccc---c---ChhhhhcCCcEEEEeccCChhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYC---A---NVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~---~---~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
.|++|.|.|.|.+|...++.++.+|.+|++.+.+..+. .++... . .+.++....|+++-++... .+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence 58899999999999999999999999987765544321 122111 1 1223334578888776421 11
Q ss_pred hccCHHHHhcCCCCcEEEEcC
Q 035615 146 HIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~a 166 (223)
+ .+.++.++++..++.++
T Consensus 261 --~-~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLG 278 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeC
Confidence 1 23455666666666654
No 398
>PRK14851 hypothetical protein; Provisional
Probab=95.38 E-value=0.048 Score=52.66 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.1
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSR 110 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 110 (223)
..|++++|+|+|+|.+|..+++.|...|. ++..+|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46999999999999999999999999998 4666553
No 399
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.37 E-value=0.038 Score=48.34 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=42.4
Q ss_pred EEEEEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCC----------Cc------ccccChhhhhcCCcEEEEecc
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSV----------LF------PYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~~------~~~~~l~el~~~aDiv~~~~p 139 (223)
+|+|||.|.+|..+|-.+...+. ++..+|....... .+ ....+-.+.++.||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998876665 6888888654322 00 011223467899999999874
No 400
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.36 E-value=0.039 Score=37.93 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.9
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS 115 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~ 115 (223)
++.|||-|.+|-.+|..++.+|.+|..+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999998877655
No 401
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.25 E-value=0.13 Score=45.53 Aligned_cols=114 Identities=15% Similarity=0.257 Sum_probs=64.6
Q ss_pred CEEEEEecChHHHHHHHHHHh--------CC--CEEEEE-cCCCCC--CCCc---------------cc--------ccC
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA--------FG--FIISYN-SRRKRP--SVLF---------------PY--------CAN 123 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~--------~G--~~V~~~-~~~~~~--~~~~---------------~~--------~~~ 123 (223)
.+|+|+|+|++|+.+++.+.. +| .+|.++ |++... ..+. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998865 56 565543 433111 0000 00 115
Q ss_pred hhhhh--cCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce-EEEeeCCCCCCC
Q 035615 124 VYDLA--VNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGRGALI-DEKEMLQFLVQGDIN-GVGLDVFENDPN 198 (223)
Q Consensus 124 l~el~--~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~v-d~~al~~aL~~~~i~-~a~lDV~~~EP~ 198 (223)
+++++ ..+|+|+-+.+.. ....+ ..+.++.|.-+|-...|.+. ..+.|.+..++++.. .+.-.|...-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 66777 4799998777422 22222 22335566667766565443 555666665554443 233345555554
No 402
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.25 E-value=0.07 Score=46.85 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCCEEEEEecChHHHHHHHHHHh-CC-CEEEEEcCCCCCCCCc---ccccChhhhhc--CCcEEEEeccCChhhhhccCH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQA-FG-FIISYNSRRKRPSVLF---PYCANVYDLAV--NSDVLVVCCALTEQTHHIINK 150 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~---~~~~~l~el~~--~aDiv~~~~p~t~~t~~li~~ 150 (223)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.+ ......+++.+ ..|+|+-++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 48899999999999999998886 54 5788888776543211 11111222222 378888877521 011112 3
Q ss_pred HHHhcCCCCcEEEEcCC
Q 035615 151 DVMAELGKGGMIINVGR 167 (223)
Q Consensus 151 ~~l~~mk~ga~lIN~ar 167 (223)
+.++.++++..++.++-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 46778888888887763
No 403
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.24 E-value=0.11 Score=45.49 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=56.9
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCC------Cc----cc--c---cChhhhhcCCcEEEEeccC-
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSV------LF----PY--C---ANVYDLAVNSDVLVVCCAL- 140 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~------~~----~~--~---~~l~el~~~aDiv~~~~p~- 140 (223)
++|+|||. |++|..+|-.+...|. ++..+|.. .... .. .. . +++.+.++.||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987675 68888876 2211 11 11 1 1235779999999998743
Q ss_pred -Ch-hhhh-cc--CH-------HHHhcCCCCcEEEEcCCC
Q 035615 141 -TE-QTHH-II--NK-------DVMAELGKGGMIINVGRG 168 (223)
Q Consensus 141 -t~-~t~~-li--~~-------~~l~~mk~ga~lIN~arg 168 (223)
.| ++|- ++ |. +.+....|.+++|+++.-
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 22 1221 22 11 233444688999998654
No 404
>PRK10206 putative oxidoreductase; Provisional
Probab=95.22 E-value=0.035 Score=49.20 Aligned_cols=62 Identities=11% Similarity=0.284 Sum_probs=42.0
Q ss_pred CEEEEEecChHHHH-HHHHHHh--CCCEEE-EEcCCCCCCC------CcccccChhhhhc--CCcEEEEeccCC
Q 035615 80 MQVGIVRLGNIGSE-VLNRLQA--FGFIIS-YNSRRKRPSV------LFPYCANVYDLAV--NSDVLVVCCALT 141 (223)
Q Consensus 80 ~~vgIiG~G~iG~~-~a~~l~~--~G~~V~-~~~~~~~~~~------~~~~~~~l~el~~--~aDiv~~~~p~t 141 (223)
.++||||+|.|++. .+..+.. -++++. ++|++++... ....+.+++++++ +.|+|++++|..
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 37999999998764 3443432 267765 6787653221 1234678999996 579999999854
No 405
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.20 E-value=0.066 Score=48.47 Aligned_cols=83 Identities=6% Similarity=-0.070 Sum_probs=52.3
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC---CCccc----ccC---hhh-hhcCCcEEEEeccCChhhhhc
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS---VLFPY----CAN---VYD-LAVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~----~~~---l~e-l~~~aDiv~~~~p~t~~t~~l 147 (223)
..++-|+|+|++|+.+++.|+..|.++.+.+.+.... .+... ..+ +++ =+++|+.|+++.+..+++..+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 5679999999999999999999998887776542211 11110 112 222 256899998888765544433
Q ss_pred cCHHHHhcCCCCcEEE
Q 035615 148 INKDVMAELGKGGMII 163 (223)
Q Consensus 148 i~~~~l~~mk~ga~lI 163 (223)
....+.+.|+..+|
T Consensus 320 --vL~ar~l~p~~kII 333 (393)
T PRK10537 320 --VLAAKEMSSDVKTV 333 (393)
T ss_pred --HHHHHHhCCCCcEE
Confidence 23445555654444
No 406
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=95.20 E-value=0.086 Score=46.22 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred EEEEEec-ChHHHHHHHHHHhCCC--EEEEEcCCCCCCC-----Cc----ccc----c-ChhhhhcCCcEEEEeccCC--
Q 035615 81 QVGIVRL-GNIGSEVLNRLQAFGF--IISYNSRRKRPSV-----LF----PYC----A-NVYDLAVNSDVLVVCCALT-- 141 (223)
Q Consensus 81 ~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-----~~----~~~----~-~l~el~~~aDiv~~~~p~t-- 141 (223)
+|+|||. |.+|..+|-.|...+. ++..+|..+.... .. ... . ++.+.++.||+|+++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999998876554 6888887662111 11 111 1 2367899999999987432
Q ss_pred h-hhh-hcc--CH-------HHHhcCCCCcEEEEcCCC
Q 035615 142 E-QTH-HII--NK-------DVMAELGKGGMIINVGRG 168 (223)
Q Consensus 142 ~-~t~-~li--~~-------~~l~~mk~ga~lIN~arg 168 (223)
+ .++ .++ |. +.+....|.+++|+++.-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 111 111 11 233444689999998653
No 407
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.19 E-value=0.11 Score=44.27 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 035615 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQAF----GF-------IIS 106 (223)
Q Consensus 38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~ 106 (223)
+|=-+++-+++..|- .+..|++.+|.|+|.|.-|-.+|+.+... |. +++
T Consensus 4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~ 63 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW 63 (255)
T ss_dssp HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence 445567777777664 34569999999999999999999999877 87 377
Q ss_pred EEcCCC----CCC--C-----------CcccccChhhhhcCC--cEEEEeccCChhhhhccCHHHHhcCCC---CcEEEE
Q 035615 107 YNSRRK----RPS--V-----------LFPYCANVYDLAVNS--DVLVVCCALTEQTHHIINKDVMAELGK---GGMIIN 164 (223)
Q Consensus 107 ~~~~~~----~~~--~-----------~~~~~~~l~el~~~a--Div~~~~p~t~~t~~li~~~~l~~mk~---ga~lIN 164 (223)
.+|+.. ... . ......+|.|+++.. |+++=+- ..-++|+++.++.|.+ ..++.=
T Consensus 64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence 777652 111 0 001124899999988 9886542 2567899999999977 789998
Q ss_pred cCCCcccCHHHHHHHHHc
Q 035615 165 VGRGALIDEKEMLQFLVQ 182 (223)
Q Consensus 165 ~arg~~vd~~al~~aL~~ 182 (223)
.|+-..--|-.-.++.+-
T Consensus 140 LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 140 LSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp -SSSCGGSSS-HHHHHHT
T ss_pred CCCCCCcccCCHHHHHhh
Confidence 888766333333333333
No 408
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.17 E-value=0.055 Score=46.00 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=44.5
Q ss_pred EEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC---------CcccccChhhhh------cC-CcEEEEeccCC
Q 035615 81 QVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV---------LFPYCANVYDLA------VN-SDVLVVCCALT 141 (223)
Q Consensus 81 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el~------~~-aDiv~~~~p~t 141 (223)
+|.|.|. |.+|+.+++.|...|++|.+..|++.... .+....++.+.+ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4778886 99999999999999999999988775322 111234455566 45 89998887754
No 409
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.16 E-value=0.073 Score=46.85 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=44.7
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCC--CEEEEEcCCCCCCC--C-------ccc--c---cChhhhhcCCcEEEEec
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFG--FIISYNSRRKRPSV--L-------FPY--C---ANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~el~~~aDiv~~~~ 138 (223)
-++.++|+|+|. |++|..+|..+...+ .++..+|+...... + ... . .+..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 367789999999 999999999988444 57888887321110 1 111 1 11257899999999887
Q ss_pred c
Q 035615 139 A 139 (223)
Q Consensus 139 p 139 (223)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 4
No 410
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=95.16 E-value=0.16 Score=47.56 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEec---ChHHHHHHHHHHhCC-CEEEEEcCCCCCCC----------C--cccccChhhhhcCCcEE--E
Q 035615 74 GFKLGGMQVGIVRL---GNIGSEVLNRLQAFG-FIISYNSRRKRPSV----------L--FPYCANVYDLAVNSDVL--V 135 (223)
Q Consensus 74 ~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDiv--~ 135 (223)
+..+.|++|+++|= +++.++++..+..|| ++|.+..|..-... + +....++++.++.+|+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 33588999999996 699999999999998 99988876443211 1 22357899999999952 2
Q ss_pred E-------eccCC-----hh--hhhccCHHHHhcCCCCcEEEEcC
Q 035615 136 V-------CCALT-----EQ--THHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 136 ~-------~~p~t-----~~--t~~li~~~~l~~mk~ga~lIN~a 166 (223)
. ..+.. .. -...++++.++.+|++++|.-+.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 2 12111 01 13457899999999999998876
No 411
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.11 E-value=0.079 Score=45.64 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-------------C-------cccccChhhhhcCCcEEEEe
Q 035615 79 GMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-------------L-------FPYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 79 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~-------~~~~~~l~el~~~aDiv~~~ 137 (223)
|++|.|.| .|-||+.+++.|...|++|.+..|+..... . ......++++++.+|+|+.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 68999999 699999999999999999987776543210 0 01123466778889988766
Q ss_pred cc
Q 035615 138 CA 139 (223)
Q Consensus 138 ~p 139 (223)
..
T Consensus 84 A~ 85 (322)
T PLN02662 84 AS 85 (322)
T ss_pred CC
Confidence 53
No 412
>PLN02214 cinnamoyl-CoA reductase
Probab=94.98 E-value=0.083 Score=46.49 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC------------CCc-------ccccChhhhhcCCcEEE
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS------------VLF-------PYCANVYDLAVNSDVLV 135 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~~-------~~~~~l~el~~~aDiv~ 135 (223)
.+++++|.|.|. |.||+.+++.|...|++|.+..|+.... ... ....+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999997 9999999999999999999887754321 001 11234566788899887
Q ss_pred Eecc
Q 035615 136 VCCA 139 (223)
Q Consensus 136 ~~~p 139 (223)
.+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 6653
No 413
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.97 E-value=0.023 Score=46.92 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=46.0
Q ss_pred EEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-------CCc-------ccccChhhhhcCCcEEEEeccCC
Q 035615 82 VGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-------VLF-------PYCANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 82 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~-------~~~~~l~el~~~aDiv~~~~p~t 141 (223)
|.|+|. |.+|+.+++.|...+++|.+..|..... .+. ....++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678995 9999999999999999999888876321 111 12356777899999999999843
No 414
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.95 E-value=0.068 Score=47.09 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=32.3
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK 112 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 112 (223)
+++++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 67899999994 9999999999999999999998743
No 415
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.27 Score=42.76 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=67.9
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C--cccccChhhhhcCCcEEEEecc
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L--FPYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~el~~~aDiv~~~~p 139 (223)
|+|+|+..+|= .+++.++......+|++|....|..-... + .....+.++.++.+|+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 89999999995 57899998888999999987766542211 1 2235689999999999987663
Q ss_pred CC--hhhh-----------hccCHHHHhcCCCCcEEEEcC
Q 035615 140 LT--EQTH-----------HIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 140 ~t--~~t~-----------~li~~~~l~~mk~ga~lIN~a 166 (223)
.. ++.+ .-+|++.++.-+++++|.-|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 22 2221 567889999999999999885
No 416
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.93 E-value=0.091 Score=46.28 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=58.2
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CC-------Cc--------ccccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SV-------LF--------PYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~el~~~aDiv 134 (223)
++|+|||. |.+|..+|-.+...|. ++..+|..... .. .. ....+..+.++.||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999998876555 68888874332 11 00 0123445779999999
Q ss_pred EEeccC--Ch-hhhh-cc--CH-------HHHhcCC-CCcEEEEcCCCcccCHHH
Q 035615 135 VVCCAL--TE-QTHH-II--NK-------DVMAELG-KGGMIINVGRGALIDEKE 175 (223)
Q Consensus 135 ~~~~p~--t~-~t~~-li--~~-------~~l~~mk-~ga~lIN~arg~~vd~~a 175 (223)
+++.-. .+ +|+. ++ |. +.+.... |.+++|+++ ..+|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 998743 11 1221 11 11 1233334 588999986 5555444
No 417
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.92 E-value=0.072 Score=46.58 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=56.4
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCh-hhhhcCCcEEEEeccCChhhhhccCHH
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPYCANV-YDLAVNSDVLVVCCALTEQTHHIINKD 151 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l-~el~~~aDiv~~~~p~t~~t~~li~~~ 151 (223)
.|.+|.|.|.|.+|...++.++.+|++|++.++++++.+ ++....+. ++.-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 488999999999999999999999999988877665432 22211111 11112357666655422 1 22 45
Q ss_pred HHhcCCCCcEEEEcCC
Q 035615 152 VMAELGKGGMIINVGR 167 (223)
Q Consensus 152 ~l~~mk~ga~lIN~ar 167 (223)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6778888888888774
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.84 E-value=0.047 Score=51.57 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=46.6
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------C------cc-------cccChhhhh
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------L------FP-------YCANVYDLA 128 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------~------~~-------~~~~l~el~ 128 (223)
-.|+++.|.|. |.||+.+++.|...|++|.++.|+..... + .. ...++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46889999995 99999999999999999998887643210 0 10 112344567
Q ss_pred cCCcEEEEeccC
Q 035615 129 VNSDVLVVCCAL 140 (223)
Q Consensus 129 ~~aDiv~~~~p~ 140 (223)
..+|+|+.++..
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 889999888643
No 419
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.83 E-value=0.1 Score=46.17 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCEEEEEec-ChHHHHHHHHHHh--CC-CEEEEEcCCCCCCC-----C-cccccChhhh-hcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRL-GNIGSEVLNRLQA--FG-FIISYNSRRKRPSV-----L-FPYCANVYDL-AVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~-G~iG~~~a~~l~~--~G-~~V~~~~~~~~~~~-----~-~~~~~~l~el-~~~aDiv~~~~p~t~~t~~ 146 (223)
++.+|+|||. |-.|+.+.+.|.. +- .++..+........ + ...+.++++. +.++|++++++|... .
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~-s-- 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA-S-- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHH-H--
Confidence 4678999996 9999999999987 43 35544432211111 1 1112344444 378999999998442 2
Q ss_pred ccCHHHHhcC-CCCcEEEEcC
Q 035615 147 IINKDVMAEL-GKGGMIINVG 166 (223)
Q Consensus 147 li~~~~l~~m-k~ga~lIN~a 166 (223)
.++...+ +.|+.+|+.|
T Consensus 80 ---~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 80 ---AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ---HHHHHHHHHCCCEEEECC
Confidence 2222222 5688899888
No 420
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.83 E-value=0.086 Score=45.92 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred EEecChHHHHHHHHHHhCCC--EEEEEcCCCCCCCC---------------cccccChhhhhcCCcEEEEeccC--Ch-h
Q 035615 84 IVRLGNIGSEVLNRLQAFGF--IISYNSRRKRPSVL---------------FPYCANVYDLAVNSDVLVVCCAL--TE-Q 143 (223)
Q Consensus 84 IiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDiv~~~~p~--t~-~ 143 (223)
|||.|.+|..+|..+...+. ++..+|.......+ .....+-.+.+++||+|+++.-. .| .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 68999999999999886665 68899986653321 01112335779999999998642 11 1
Q ss_pred hh--------hccC--HHHHhcCCCCcEEEEcC
Q 035615 144 TH--------HIIN--KDVMAELGKGGMIINVG 166 (223)
Q Consensus 144 t~--------~li~--~~~l~~mk~ga~lIN~a 166 (223)
++ .++. .+.+....|.+++|+++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 12 1111 12344457889999987
No 421
>PRK06398 aldose dehydrogenase; Validated
Probab=94.82 E-value=0.17 Score=42.49 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=33.8
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999995 79999999999999999998887654
No 422
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.79 E-value=0.12 Score=45.58 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=43.3
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------c--------ccccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------F--------PYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~el~~~aDiv 134 (223)
.+|+|||. |.+|..+|-.|...|. ++..+|..... ..+ . ....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 47999998 9999999999886664 78888875421 110 0 0113455789999999
Q ss_pred EEecc
Q 035615 135 VVCCA 139 (223)
Q Consensus 135 ~~~~p 139 (223)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99874
No 423
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.74 E-value=0.086 Score=47.02 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.3
Q ss_pred CCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-C----Ccc-------cccChhhhhcCCcEEEEec
Q 035615 78 GGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-V----LFP-------YCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 78 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~~~-------~~~~l~el~~~aDiv~~~~ 138 (223)
.+|+|.|.|. |-||+.+++.|...|++|.+.+|..... . ... ...++.++++++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 4789999996 9999999999999999999988753211 0 001 1122344567889887665
No 424
>PRK12861 malic enzyme; Reviewed
Probab=94.73 E-value=0.25 Score=48.29 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=72.0
Q ss_pred CccccCCCEEEEEecChHHHHHHHHHHhCCC---EEEEEcCCC-----CC--CC----Cc---ccccChhhhhcCCcEEE
Q 035615 73 LGFKLGGMQVGIVRLGNIGSEVLNRLQAFGF---IISYNSRRK-----RP--SV----LF---PYCANVYDLAVNSDVLV 135 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~-----~~--~~----~~---~~~~~l~el~~~aDiv~ 135 (223)
.++.|+..+|.|.|.|.-|..+++.+...|. +++.+|+.. +. .. .+ ....+|.|+++.+|+++
T Consensus 183 ~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advli 262 (764)
T PRK12861 183 VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFL 262 (764)
T ss_pred hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEE
Confidence 3567899999999999999999999999998 688888543 11 11 01 12358999999999775
Q ss_pred EeccCChhhhhccCHHHHhcCCCCcEEEEcCCCcc
Q 035615 136 VCCALTEQTHHIINKDVMAELGKGGMIINVGRGAL 170 (223)
Q Consensus 136 ~~~p~t~~t~~li~~~~l~~mk~ga~lIN~arg~~ 170 (223)
= +. .-++|+++.++.|.+..++.=.|.-..
T Consensus 263 G-~S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp 292 (764)
T PRK12861 263 G-LS----AGGVLKAEMLKAMAARPLILALANPTP 292 (764)
T ss_pred E-cC----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence 3 42 258999999999999999998887664
No 425
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.71 E-value=0.077 Score=45.62 Aligned_cols=60 Identities=20% Similarity=0.116 Sum_probs=44.2
Q ss_pred CEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Ccc-------cccChhhhhcCCcEEEEecc
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFP-------YCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDiv~~~~p 139 (223)
+++.|.| .|.||+.+++.|...|++|.+.+|++.... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 499999999999999999999888654321 111 12345667888998877654
No 426
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.71 E-value=0.035 Score=55.87 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=61.9
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhCCCEEE-----------------------EE----cCCCC---CC--CCc------
Q 035615 77 LGGMQVGIVRLGNIGSEVLNRLQAFGFIIS-----------------------YN----SRRKR---PS--VLF------ 118 (223)
Q Consensus 77 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-----------------------~~----~~~~~---~~--~~~------ 118 (223)
+.-.+|.|+|.|++|+..++.+..+|++.+ .| .+... .. ..+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 446789999999999999999988865410 00 00000 00 000
Q ss_pred ----ccccC-hhhhhcCCcEEEEeccCChhhhhccCHH-HHhcCCCCc----EEEEcC
Q 035615 119 ----PYCAN-VYDLAVNSDVLVVCCALTEQTHHIINKD-VMAELGKGG----MIINVG 166 (223)
Q Consensus 119 ----~~~~~-l~el~~~aDiv~~~~p~t~~t~~li~~~-~l~~mk~ga----~lIN~a 166 (223)
.+... +++.++.+|+++.++-..+..-.++.++ ..+.||+|. +|+|++
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00112 3568899999999997777777888888 778899998 888876
No 427
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.16 Score=42.59 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=33.9
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+++++++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 99999999999999999999988753
No 428
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.69 E-value=0.077 Score=47.78 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=34.0
Q ss_pred ccccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615 74 GFKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK 112 (223)
Q Consensus 74 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 112 (223)
+....+++|.|+|. |.||+.+++.|...|++|..++|+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 34567899999995 9999999999999999999888765
No 429
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.08 Score=43.54 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=28.7
Q ss_pred EEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 81 QVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 81 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
++.|.|. |.||+.+++.+...|++|+..+|+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~ 35 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD 35 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6788885 89999999999999999998887653
No 430
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=94.68 E-value=0.094 Score=49.26 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=63.2
Q ss_pred ccCCCEEEEEecCh-HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHHh
Q 035615 76 KLGGMQVGIVRLGN-IGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVMA 154 (223)
Q Consensus 76 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~ 154 (223)
.+.|++..++|-.. +|..++..|+.....|..+... ..++.|.+.++|+|+.++- .-+++-.++
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG----~PefVKgdW-- 223 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIG----QPEFVKGDW-- 223 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcC----Ccceeeccc--
Confidence 57899999999755 5899999999988999877432 3578999999999999985 234454554
Q ss_pred cCCCCcEEEEcCCCcccC
Q 035615 155 ELGKGGMIINVGRGALID 172 (223)
Q Consensus 155 ~mk~ga~lIN~arg~~vd 172 (223)
+|||+++|+++--.+-|
T Consensus 224 -iKpGavVIDvGINyvpD 240 (935)
T KOG4230|consen 224 -IKPGAVVIDVGINYVPD 240 (935)
T ss_pred -ccCCcEEEEccccccCC
Confidence 58999999998655444
No 431
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.68 E-value=0.078 Score=44.15 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.9
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
.++||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999995 99999999999999999999888653
No 432
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.66 E-value=0.16 Score=45.16 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=49.2
Q ss_pred CCEEEEEec-ChHHHHHHHHHHh-CCCE---EEEE-cCCC-CCCCCc----ccc--cChhhhhcCCcEEEEeccCChhhh
Q 035615 79 GMQVGIVRL-GNIGSEVLNRLQA-FGFI---ISYN-SRRK-RPSVLF----PYC--ANVYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 79 g~~vgIiG~-G~iG~~~a~~l~~-~G~~---V~~~-~~~~-~~~~~~----~~~--~~l~el~~~aDiv~~~~p~t~~t~ 145 (223)
+.+|||||. |..|+.+.+.|.. -.++ +..+ +... .+...+ ..+ .+.++ ++++|++++++|.. ...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence 568999996 9999999999984 5665 4333 3221 111111 111 23333 57899999999844 222
Q ss_pred hccCHHHHhc-CCCCcEEEEcC
Q 035615 146 HIINKDVMAE-LGKGGMIINVG 166 (223)
Q Consensus 146 ~li~~~~l~~-mk~ga~lIN~a 166 (223)
.+ ... .+.|+.+|+.|
T Consensus 83 ~~-----~~~~~~~G~~VID~S 99 (347)
T PRK06728 83 QF-----VNQAVSSGAIVIDNT 99 (347)
T ss_pred HH-----HHHHHHCCCEEEECc
Confidence 22 222 25678888877
No 433
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.26 Score=40.98 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.4
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
.+++|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4588999999995 89999999999999999998887653
No 434
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.62 E-value=0.28 Score=45.06 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=60.9
Q ss_pred CEEEEEec-ChHHHHHHHHHHhC-------CC--EEEEEcCCCCCCCC--------c------cc-ccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAF-------GF--IISYNSRRKRPSVL--------F------PY-CANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~-------G~--~V~~~~~~~~~~~~--------~------~~-~~~l~el~~~aDiv 134 (223)
.+|+|||. |.+|..+|-.+... |. +++.+|+..+...+ . .. ..+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 58999999 99999999988755 44 67888887665431 0 01 13445779999999
Q ss_pred EEeccC--Chh-hh--------hccC--HHHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 035615 135 VVCCAL--TEQ-TH--------HIIN--KDVMAE-LGKGGMIINVGRGALIDEKEML 177 (223)
Q Consensus 135 ~~~~p~--t~~-t~--------~li~--~~~l~~-mk~ga~lIN~arg~~vd~~al~ 177 (223)
+++.-. .+. ++ .++. .+.+.. ..+.+++|.++ ..+|.-..+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 998732 221 11 1121 123344 46788999887 445554443
No 435
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.06 Score=49.65 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=67.9
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccccc-cChhhhhcCCcEEEEec---cC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFPYC-ANVYDLAVNSDVLVVCC---AL 140 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~-~~l~el~~~aDiv~~~~---p~ 140 (223)
..+.+++|.|||.|.+|.++|+.|+..|++|.++|+...... +.... ..-.+....+|+|+++. |.
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence 457799999999999999999999999999999986542110 11111 01111345689998876 33
Q ss_pred Chh-----hh--hccCH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 141 TEQ-----TH--HIINK-DVM-AELGK----GGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 141 t~~-----t~--~li~~-~~l-~~mk~----ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
++. .. .++++ +++ ..+.+ ..+-|--+.|+.--..-+...|+..
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 332 11 12332 232 33322 2456666678887777777778763
No 436
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.57 E-value=0.11 Score=45.30 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=56.1
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---cc--C-hhhhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CA--N-VYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~-l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
.|.++.|.|.|.+|+.+++.++.+|++|++.+++.+... +... .. + ..+.-...|+++.+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 478999999999999999999999999988877653321 1111 01 1 1122345788887776321
Q ss_pred ccCHHHHhcCCCCcEEEEcCC
Q 035615 147 IINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~ar 167 (223)
...+.++.++++..+++++.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12445666777777777764
No 437
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.56 E-value=0.17 Score=42.55 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=26.0
Q ss_pred EEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
+|.|||.|.+|..+++.|...|+ ++.++|..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999998888 46666543
No 438
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.55 E-value=0.21 Score=43.83 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=53.2
Q ss_pred EEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-------------C-----------------c--c----cccC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-------------L-----------------F--P----YCAN 123 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-------------~-----------------~--~----~~~~ 123 (223)
+|.|||.|.+|..+++.|...|.. +..+|...-... + . . ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 589999999999999999988984 777765432110 0 0 0 0111
Q ss_pred ---hhhhhcCCcEEEEeccCChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 124 ---VYDLAVNSDVLVVCCALTEQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 124 ---l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
..+.+++.|+|+.++ .+.+.+..+++..... +.-+|+.+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence 236778889888877 4556677776655443 334666553
No 439
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.53 E-value=0.084 Score=45.96 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Cccc---cc--Ch---hhhhc--CCcEEEEeccCC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPY---CA--NV---YDLAV--NSDVLVVCCALT 141 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~---~~--~l---~el~~--~aDiv~~~~p~t 141 (223)
.|.+|.|+|.|.+|...++.++.+|++ |++.+++.++.. ++.. .. +. .++.. ..|+++-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 489999999999999999999999998 888877654321 1111 11 11 22222 478888776422
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
.. + ...+..++++..++.++.
T Consensus 243 -~~---~-~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 -AA---R-RLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -HH---H-HHHHHHhhcCCEEEEEcC
Confidence 11 1 345667788888887764
No 440
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.53 E-value=0.088 Score=43.41 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=34.0
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
++.++++.|+|. |.||+.+++.|...|++|++.+|++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999995 99999999999999999999998864
No 441
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.51 E-value=0.15 Score=44.22 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEE
Q 035615 78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVV 136 (223)
Q Consensus 78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~ 136 (223)
.||++.|.| .|-||+.+++.|...|++|++..|+..... +.....+++++++..|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999999 499999999999999999987665543210 01112345667788998877
Q ss_pred ecc
Q 035615 137 CCA 139 (223)
Q Consensus 137 ~~p 139 (223)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 663
No 442
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.49 E-value=0.14 Score=45.09 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=58.2
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCC--CCCCC-------c--------ccccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRK--RPSVL-------F--------PYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~el~~~aDiv 134 (223)
.+|+|+|. |.+|+.++..|...|. ++..+|+.. ....+ . ....+..+.++.||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998876443 488888765 32221 0 0013566889999999
Q ss_pred EEeccC--Ch-hhhh-cc--C----H---HHHhcC-CCCcEEEEcCCCcccCHHH
Q 035615 135 VVCCAL--TE-QTHH-II--N----K---DVMAEL-GKGGMIINVGRGALIDEKE 175 (223)
Q Consensus 135 ~~~~p~--t~-~t~~-li--~----~---~~l~~m-k~ga~lIN~arg~~vd~~a 175 (223)
+++.-. .+ +++. ++ | + +.++.. +|++++|.++ ..+|.-.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 988632 22 1221 11 1 1 233344 5788888885 4455443
No 443
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.13 Score=42.77 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=33.6
Q ss_pred ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+++|+++.|.| .|.||+.+|+.|...|++|++.+|++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 48899999999 589999999999999999988887654
No 444
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.47 E-value=0.13 Score=45.24 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCC-------CEEEEEcCCCCC--CCC----cc-----------cccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFG-------FIISYNSRRKRP--SVL----FP-----------YCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~el~~~aDiv 134 (223)
.+|+|+|. |.+|+.++..|...+ .++..+|+.+.. ..+ .. ...++.+.++.||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 36999998 999999999987644 478888885432 111 00 124556889999999
Q ss_pred EEeccCCh---hhh-hcc--CH-------HHHhcC-CCCcEEEEcC
Q 035615 135 VVCCALTE---QTH-HII--NK-------DVMAEL-GKGGMIINVG 166 (223)
Q Consensus 135 ~~~~p~t~---~t~-~li--~~-------~~l~~m-k~ga~lIN~a 166 (223)
+.+.-... .++ .++ |. +.+... ++++++|.++
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 88763321 111 111 21 123333 5688888887
No 445
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.46 E-value=0.13 Score=43.26 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=30.7
Q ss_pred ccCCCEEEEEec---ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615 76 KLGGMQVGIVRL---GNIGSEVLNRLQAFGFIISYNSRR 111 (223)
Q Consensus 76 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~ 111 (223)
++.||++.|.|. +.||+++|+.+...|++|+...+.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 367999999997 489999999999999998766543
No 446
>PLN02427 UDP-apiose/xylose synthase
Probab=94.46 E-value=0.097 Score=46.71 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=46.2
Q ss_pred ccccCCCEEEEEe-cChHHHHHHHHHHhC-CCEEEEEcCCCCCCC------------Ccc-------cccChhhhhcCCc
Q 035615 74 GFKLGGMQVGIVR-LGNIGSEVLNRLQAF-GFIISYNSRRKRPSV------------LFP-------YCANVYDLAVNSD 132 (223)
Q Consensus 74 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~------------~~~-------~~~~l~el~~~aD 132 (223)
++.++.++|.|.| .|-||+.+++.|... |++|+++++...... ... ....+.++++.+|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 5567788999999 599999999999987 589998887543210 011 1223556778899
Q ss_pred EEEEec
Q 035615 133 VLVVCC 138 (223)
Q Consensus 133 iv~~~~ 138 (223)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 876554
No 447
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.42 E-value=0.18 Score=44.85 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=48.4
Q ss_pred CEEEEEe-cChHHHHHHHHHHhCC-CEEEEEcCCCCCC----C---Cc----------c--c--ccChhhhhcCCcEEEE
Q 035615 80 MQVGIVR-LGNIGSEVLNRLQAFG-FIISYNSRRKRPS----V---LF----------P--Y--CANVYDLAVNSDVLVV 136 (223)
Q Consensus 80 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~----~---~~----------~--~--~~~l~el~~~aDiv~~ 136 (223)
.+|+|+| .|.+|+.+++.|..+. +++.++.++.... . .. . . ..+.+ .+.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence 6899998 8999999999998764 4776662222111 0 01 0 0 11333 3478999999
Q ss_pred eccCChhhhhccCHHHHhcCCCCcEEEEcC
Q 035615 137 CCALTEQTHHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 137 ~~p~t~~t~~li~~~~l~~mk~ga~lIN~a 166 (223)
++|.... ..+. +.+ .+.|..+|+.+
T Consensus 83 a~p~~~s-~~~~--~~~--~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA-GEVE--EEF--AKAGKPVFSNA 107 (349)
T ss_pred eCChhHH-HHHH--HHH--HHCCCEEEECC
Confidence 9985422 2222 112 14567667665
No 448
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=94.41 E-value=0.093 Score=46.73 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=41.1
Q ss_pred EEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cc--ccccC---hhhhhc--CCcEEEEe
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LF--PYCAN---VYDLAV--NSDVLVVC 137 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~--~~~~~---l~el~~--~aDiv~~~ 137 (223)
+|+|||-|..|..+++.++.+|++|+++++.+.... .. ..+.+ +.++++ ++|.|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 589999999999999999999999999988764321 00 01233 444555 68888654
No 449
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.39 E-value=0.087 Score=44.06 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred cccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCC-------CCccc----c----cChhhhh-cCCcEEEEe
Q 035615 75 FKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPS-------VLFPY----C----ANVYDLA-VNSDVLVVC 137 (223)
Q Consensus 75 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~~----~----~~l~el~-~~aDiv~~~ 137 (223)
....+++|.|+| .|.||+.+++.|...|++|++..|+.... ..+.. . .++.+.+ ...|+|+.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 456789999999 59999999999999999998877654321 01110 1 1233445 579999977
Q ss_pred ccC
Q 035615 138 CAL 140 (223)
Q Consensus 138 ~p~ 140 (223)
.+.
T Consensus 93 ~g~ 95 (251)
T PLN00141 93 TGF 95 (251)
T ss_pred CCC
Confidence 654
No 450
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.38 E-value=0.11 Score=46.03 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=48.8
Q ss_pred EEEEEe-cChHHHHHHHHHHhCCCE---EEEEcCCCCCCC-----Cc-ccccCh-hhhhcCCcEEEEeccCChhhhhccC
Q 035615 81 QVGIVR-LGNIGSEVLNRLQAFGFI---ISYNSRRKRPSV-----LF-PYCANV-YDLAVNSDVLVVCCALTEQTHHIIN 149 (223)
Q Consensus 81 ~vgIiG-~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~~-----~~-~~~~~l-~el~~~aDiv~~~~p~t~~t~~li~ 149 (223)
+|+|+| .|.+|+.+++.|...++. +.++.+...... +. ....++ .+.+..+|++++++|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 699999999999886665 333433322211 10 011122 23458899999999854 222221
Q ss_pred HHHHhcCCCCcEEEEcC
Q 035615 150 KDVMAELGKGGMIINVG 166 (223)
Q Consensus 150 ~~~l~~mk~ga~lIN~a 166 (223)
.+ .++.|+++|+.+
T Consensus 79 ~~---~~~~G~~VID~s 92 (339)
T TIGR01296 79 PK---AAKCGAIVIDNT 92 (339)
T ss_pred HH---HHHCCCEEEECC
Confidence 11 235678888877
No 451
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.33 E-value=0.059 Score=48.98 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred CEEEEEecChHHHHHHHHHHh-CCCEEEEEc
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA-FGFIISYNS 109 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~ 109 (223)
.+|||.|||+||+.+++.+.. ++++|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 499999999999999999875 789987743
No 452
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.32 E-value=0.24 Score=41.52 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred cccCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCCC
Q 035615 75 FKLGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRRK 112 (223)
Q Consensus 75 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~ 112 (223)
..++||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 34789999999975 799999999999999998877764
No 453
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.2 Score=41.10 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.4
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRR 111 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~ 111 (223)
+.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 67899999994 999999999999999998766543
No 454
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.29 E-value=0.49 Score=41.91 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=60.6
Q ss_pred c-CCCEEEEEecC-------hHHHHHHHHHHhCCCEEEEEcC-CCCCCC--------------C--cccccChhhhhcCC
Q 035615 77 L-GGMQVGIVRLG-------NIGSEVLNRLQAFGFIISYNSR-RKRPSV--------------L--FPYCANVYDLAVNS 131 (223)
Q Consensus 77 l-~g~~vgIiG~G-------~iG~~~a~~l~~~G~~V~~~~~-~~~~~~--------------~--~~~~~~l~el~~~a 131 (223)
+ .|+||+|++.| ++.++++..+..+|++|.+..| ..-... + +....++++.++.+
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 6 79999887643 7888999999999999998887 322110 1 22357889999999
Q ss_pred cEEEEeccCC-----h-----h-----hhhccCHHHHhcCCCCcEEEEcC
Q 035615 132 DVLVVCCALT-----E-----Q-----THHIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 132 Div~~~~p~t-----~-----~-----t~~li~~~~l~~mk~ga~lIN~a 166 (223)
|+|..-.=.. + + ....++++.++..+ +++|.-+.
T Consensus 246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcL 294 (335)
T PRK04523 246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCL 294 (335)
T ss_pred CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCC
Confidence 9998754111 0 0 12446777777654 67777665
No 455
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.25 E-value=0.22 Score=43.20 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=54.6
Q ss_pred EEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-------------C-----------------cc------cc-c
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-------------L-----------------FP------YC-A 122 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~-----------------~~------~~-~ 122 (223)
+|.|||.|.+|..+++.|...|+ ++.++|...-... + .. .. .
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999998888 4667664321100 0 00 00 1
Q ss_pred ChhhhhcCCcEEEEeccCChhhhhccCHHHHhcC-----CCCcEEEEcCCCc
Q 035615 123 NVYDLAVNSDVLVVCCALTEQTHHIINKDVMAEL-----GKGGMIINVGRGA 169 (223)
Q Consensus 123 ~l~el~~~aDiv~~~~p~t~~t~~li~~~~l~~m-----k~ga~lIN~arg~ 169 (223)
..++++++.|+|+.++- +.+++..+++...... +.+.-+|..+..+
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 12467788898888764 4566767766554433 1234466665443
No 456
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.25 E-value=0.22 Score=44.57 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCcccc---cC---hhhhhcCCcEEEEeccCChhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPYC---AN---VYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~---~~---l~el~~~aDiv~~~~p~t~~t~ 145 (223)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.+.. .++... .+ +.+.....|+++-++.....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~-- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA-- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence 58999999999999999999999999988876553221 122111 11 22233346888877642211
Q ss_pred hccCHHHHhcCCCCcEEEEcC
Q 035615 146 HIINKDVMAELGKGGMIINVG 166 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~a 166 (223)
+ ...++.++++..++.++
T Consensus 256 --~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 256 --L-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred --H-HHHHHhhcCCCEEEEEc
Confidence 1 23344555666665554
No 457
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.21 E-value=0.092 Score=43.46 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=33.3
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+++||++.|.|. +.||+++++.|...|++|+..+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 478999999997 55999999999999999999888754
No 458
>PRK05442 malate dehydrogenase; Provisional
Probab=94.19 E-value=0.17 Score=44.66 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=56.6
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------c--------ccccChhhhhcCCcEE
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------F--------PYCANVYDLAVNSDVL 134 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~el~~~aDiv 134 (223)
++|+|||. |.+|..+|-.+...|. ++..+|..... ..+ . ....+..+.++.||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999988765433 68888875431 110 0 0123445788999999
Q ss_pred EEeccC--Ch-hhhh-cc--CH----H---HHhc-CCCCcEEEEcCCCcccCHHH
Q 035615 135 VVCCAL--TE-QTHH-II--NK----D---VMAE-LGKGGMIINVGRGALIDEKE 175 (223)
Q Consensus 135 ~~~~p~--t~-~t~~-li--~~----~---~l~~-mk~ga~lIN~arg~~vd~~a 175 (223)
+++.-. .+ +++. ++ |. + .+.. -++.+++|.++ ..+|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 998642 11 1221 11 11 1 2222 33688999987 4444433
No 459
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.14 E-value=0.14 Score=43.22 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=41.7
Q ss_pred EEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc-----c--ccChhhhhcCCcEEEEecc
Q 035615 82 VGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFP-----Y--CANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 82 vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-----~--~~~l~el~~~aDiv~~~~p 139 (223)
|.|.| .|.||+.+++.|...|++|++.+|++....... . .....+.+..+|+|+.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 35676 699999999999999999999998765432111 0 1234456788999877764
No 460
>PRK14852 hypothetical protein; Provisional
Probab=94.13 E-value=0.15 Score=50.97 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=31.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSR 110 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 110 (223)
..|+.++|+|||+|.+|..+++.|...|. ++...|.
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~ 364 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF 364 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 45899999999999999999999999998 4656553
No 461
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.061 Score=46.33 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=34.3
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
.++.||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4689999999995 99999999999999999988887643
No 462
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.08 E-value=0.11 Score=45.74 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=46.1
Q ss_pred ccccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC----------Ccc-------cccChhhhhcCCcEEE
Q 035615 74 GFKLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV----------LFP-------YCANVYDLAVNSDVLV 135 (223)
Q Consensus 74 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~-------~~~~l~el~~~aDiv~ 135 (223)
+++-.+++|.|.| .|-||+.+++.|...|++|++.+|...... ... ....++++++..|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 4667899999999 599999999999999999988776543210 010 1123456677789776
Q ss_pred Eec
Q 035615 136 VCC 138 (223)
Q Consensus 136 ~~~ 138 (223)
-+.
T Consensus 85 h~A 87 (353)
T PLN02896 85 HVA 87 (353)
T ss_pred ECC
Confidence 555
No 463
>PRK05865 hypothetical protein; Provisional
Probab=94.07 E-value=0.32 Score=48.26 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=56.1
Q ss_pred CEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--Cc-------ccccChhhhhcCCcEEEEeccCChhhh--hc
Q 035615 80 MQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--LF-------PYCANVYDLAVNSDVLVVCCALTEQTH--HI 147 (223)
Q Consensus 80 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~el~~~aDiv~~~~p~t~~t~--~l 147 (223)
++|.|.|. |.||+.+++.|...|++|++++|+..... .. ....++.++++.+|+|+.+........ ++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 47899995 99999999999999999999887642211 11 112345567888999887764321100 00
Q ss_pred c-CHHHHhcCCC-C-cEEEEcCCCc
Q 035615 148 I-NKDVMAELGK-G-GMIINVGRGA 169 (223)
Q Consensus 148 i-~~~~l~~mk~-g-a~lIN~arg~ 169 (223)
. ....++.|+. + ..||.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 0 1223444433 2 3688888765
No 464
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.06 E-value=0.11 Score=43.86 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=41.6
Q ss_pred EEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCC--cEEEEecc
Q 035615 81 QVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNS--DVLVVCCA 139 (223)
Q Consensus 81 ~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~a--Div~~~~p 139 (223)
+|.|+| .|.||+.+++.|...|++|.+.+|... ......++.++++.. |+|+.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 478899 499999999999999999999888632 122234566667655 99987664
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.06 E-value=0.14 Score=44.96 Aligned_cols=37 Identities=22% Similarity=0.049 Sum_probs=32.6
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
++||+|.|.|. |-||+.+++.|...|++|++.+|...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 45899999995 99999999999999999998887654
No 466
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.05 E-value=0.089 Score=47.81 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=46.3
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------Cc-------ccccChhhhhcCCcEEEEec
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPSV--------LF-------PYCANVYDLAVNSDVLVVCC 138 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~el~~~aDiv~~~~ 138 (223)
.++||++.|.|. |.||+++++.+...|++|+..+|+.+... .. ....++.+.+.+.|+++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 578999999996 99999999999999999998877643211 00 01123445677899998765
No 467
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.04 E-value=0.22 Score=50.37 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------------Cc--------cc
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------------LF--------PY 120 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------------~~--------~~ 120 (223)
..-.|++|+|||-|.-|-+.|..|...|+.|.+|.|+.+.-. +. -.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence 345799999999999999999999999999999988765310 11 12
Q ss_pred ccChhhhhcCCcEEEEeccCC
Q 035615 121 CANVYDLAVNSDVLVVCCALT 141 (223)
Q Consensus 121 ~~~l~el~~~aDiv~~~~p~t 141 (223)
..+++++.++-|.|+++...|
T Consensus 1861 ~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 HVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cccHHHHhhccCeEEEEeCCC
Confidence 368999999999999997544
No 468
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.11 Score=47.29 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=66.0
Q ss_pred ccCCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC------Ccccc--cChhhhhcCCcEEEEeccCChhhh--
Q 035615 76 KLGGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV------LFPYC--ANVYDLAVNSDVLVVCCALTEQTH-- 145 (223)
Q Consensus 76 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~el~~~aDiv~~~~p~t~~t~-- 145 (223)
++.++++.|+|+|..|.+.++.|+..|++|.++|....... +.... ....+.++..|+|+.. |.-+...
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence 35688999999999999999999999999999986543211 11111 1122445678866554 3222111
Q ss_pred ---------hccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 035615 146 ---------HIINK-DVMAE-LGKGGMIINVGRGALIDEKEMLQFLVQG 183 (223)
Q Consensus 146 ---------~li~~-~~l~~-mk~ga~lIN~arg~~vd~~al~~aL~~~ 183 (223)
.++.+ +++.. ++...+-|--+.|+.--..-|...|+..
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 130 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 130 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 12222 33333 2323455666678887777788888753
No 469
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.02 E-value=0.081 Score=43.23 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=32.3
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~ 111 (223)
..|++++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999999999985 7777644
No 470
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.01 E-value=0.2 Score=44.23 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=54.9
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCC------CCccc---ccC---hhhhhcCCcEEEEeccCChhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPS------VLFPY---CAN---VYDLAVNSDVLVVCCALTEQTH 145 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~el~~~aDiv~~~~p~t~~t~ 145 (223)
.|.++.|.|.|.+|..+++.++..|.+|++.+++.++. .++.. ..+ +.+.....|+++-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 58899999999999999999999999988776554321 12211 111 22233356888887753211
Q ss_pred hccCHHHHhcCCCCcEEEEcCC
Q 035615 146 HIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 146 ~li~~~~l~~mk~ga~lIN~ar 167 (223)
+ ...++.++++..++.++.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 335566777777777763
No 471
>PRK08264 short chain dehydrogenase; Validated
Probab=94.00 E-value=0.12 Score=42.39 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=33.9
Q ss_pred ccCCCEEEEEe-cChHHHHHHHHHHhCCC-EEEEEcCCCCC
Q 035615 76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGF-IISYNSRRKRP 114 (223)
Q Consensus 76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 114 (223)
++.++++.|+| .|.||+.+|+.|...|+ +|+..+|+.++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 36789999999 59999999999999999 89988887653
No 472
>PRK05717 oxidoreductase; Validated
Probab=93.98 E-value=0.23 Score=41.30 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=33.7
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCC
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRK 112 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 112 (223)
..++||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3578999999995 9999999999999999999887764
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.96 E-value=0.098 Score=46.43 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC------CcccccC---------hhhhh--cCCcEEEEeccC
Q 035615 79 GMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV------LFPYCAN---------VYDLA--VNSDVLVVCCAL 140 (223)
Q Consensus 79 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~---------l~el~--~~aDiv~~~~p~ 140 (223)
+.+|.|+|.|.||...++.++.+|. +|++.|+++.+.+ +.....+ ..++- ..+|+++-|..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997 4777888776533 1111111 11222 24899999887
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~arg 168 (223)
++.+ + ...++..+++..++.++-.
T Consensus 248 ~~~~---~-~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SPPA---L-DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CHHH---H-HHHHHHhcCCCEEEEEecc
Confidence 2221 1 3456677888777777643
No 474
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.95 E-value=0.13 Score=42.25 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=33.8
Q ss_pred ccCCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
.+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46789999999 699999999999999999999988753
No 475
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.94 E-value=0.66 Score=41.91 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=64.9
Q ss_pred CccccCCCEEEEEec---ChH-------HHHHHHHHHhCCCEEEEEcCCCCCCC----Cc-ccccChhhhhcCCcEEEEe
Q 035615 73 LGFKLGGMQVGIVRL---GNI-------GSEVLNRLQAFGFIISYNSRRKRPSV----LF-PYCANVYDLAVNSDVLVVC 137 (223)
Q Consensus 73 ~~~~l~g~~vgIiG~---G~i-------G~~~a~~l~~~G~~V~~~~~~~~~~~----~~-~~~~~l~el~~~aDiv~~~ 137 (223)
.++.+++.+|.++|+ |++ .-.+.+.+...|.+|.+||+.-...+ +. ....++++.++.+|+|++.
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~ 395 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIA 395 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEE
Confidence 345688999999996 555 35788888999999999999876432 21 1236789999999999998
Q ss_pred ccCChhhhhccCHHHHhcCCCCcEEEEcCCC
Q 035615 138 CALTEQTHHIINKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 138 ~p~t~~t~~li~~~~l~~mk~ga~lIN~arg 168 (223)
+-..+ ...++.+.+..+ ..+++++ |+
T Consensus 396 tDH~~--fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 396 TDHSE--FKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred eccHH--hhcCCHHHhccC--CcEEEEC-cc
Confidence 74221 124677777655 5577775 44
No 476
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.92 E-value=0.098 Score=44.00 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----C-cccccChh-hh--hcCCcEEEEeccCChhhhhc
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----L-FPYCANVY-DL--AVNSDVLVVCCALTEQTHHI 147 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~-~~~~~~l~-el--~~~aDiv~~~~p~t~~t~~l 147 (223)
.|.++.|.|.|.+|+.+++.++.+|.+ |++.+++.+... + ........ +. -...|+++.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 488999999999999999999999998 888876543321 1 01000111 11 124788877664221 1
Q ss_pred cCHHHHhcCCCCcEEEEcCCC
Q 035615 148 INKDVMAELGKGGMIINVGRG 168 (223)
Q Consensus 148 i~~~~l~~mk~ga~lIN~arg 168 (223)
+ ...+..++++..+++++-.
T Consensus 173 ~-~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 L-ETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred H-HHHHHHhcCCcEEEEEecc
Confidence 1 4566778888889888754
No 477
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.13 Score=43.29 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=47.0
Q ss_pred cccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCCCC-C----C---c-----ccccChhhhhcCCcEEEEecc
Q 035615 75 FKLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKRPS-V----L---F-----PYCANVYDLAVNSDVLVVCCA 139 (223)
Q Consensus 75 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~---~-----~~~~~l~el~~~aDiv~~~~p 139 (223)
..+.|+++.|.|. |.||+.+|+.+...|++|++.+|+.... . . . ....+.++.+...|+++.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 4578999999996 7899999999999999999887765111 0 0 0 011233456778999988864
No 478
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.89 E-value=0.18 Score=44.30 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRP 114 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~ 114 (223)
.|.+|.|+|.|.+|..+++.++..|.+|++.++++++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence 4889999999999999999999999999888776543
No 479
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.87 E-value=0.2 Score=44.45 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=56.0
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCCCCCCC-----Cccc---c--cCh-hh---hhc-CCcEEEEeccCC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRRKRPSV-----LFPY---C--ANV-YD---LAV-NSDVLVVCCALT 141 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~---~--~~l-~e---l~~-~aDiv~~~~p~t 141 (223)
.|.+|.|.|.|.+|...++.++..|+ +|++.++++.+.. ++.. . .++ ++ +.. ..|+++-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 48899999999999999999999999 5888877654321 2111 1 111 11 111 378888776422
Q ss_pred hhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 142 EQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 142 ~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
.+ + ...++.++++..++.++-
T Consensus 271 -~~---~-~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 -PA---L-ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -HH---H-HHHHHHHhcCCEEEEEcc
Confidence 11 1 345667788888888764
No 480
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.86 E-value=2.5 Score=40.09 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHcCCCCCCCCCCCccccCCCEEEEEecChHHHHHHHHHHh-----CCC-------EE
Q 035615 38 VADLAIGLLIDFLRRISPGNWYVRAGLWAKTGDYPLGFKLGGMQVGIVRLGNIGSEVLNRLQA-----FGF-------II 105 (223)
Q Consensus 38 vAE~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~-----~G~-------~V 105 (223)
+|--+++-+|+..|- .+..|...+|.|+|.|..|-.+|+.+.. .|. ++
T Consensus 300 TaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i 359 (581)
T PLN03129 300 TAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRI 359 (581)
T ss_pred HHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcE
Confidence 566677777776663 2456899999999999999999998876 466 67
Q ss_pred EEEcCCCC----C---CC--------CcccccChhhhhcC--CcEEEEeccCChhhhhccCHHHHhcCC---CCcEEEEc
Q 035615 106 SYNSRRKR----P---SV--------LFPYCANVYDLAVN--SDVLVVCCALTEQTHHIINKDVMAELG---KGGMIINV 165 (223)
Q Consensus 106 ~~~~~~~~----~---~~--------~~~~~~~l~el~~~--aDiv~~~~p~t~~t~~li~~~~l~~mk---~ga~lIN~ 165 (223)
+.+|+..- . .. ......+|.|+++. .|+++=+- ..-++|+++.++.|. +..++.=.
T Consensus 360 ~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 360 WLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred EEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 77776531 1 10 01123589999988 88876532 123789999999995 77888888
Q ss_pred CCCc
Q 035615 166 GRGA 169 (223)
Q Consensus 166 arg~ 169 (223)
|.-.
T Consensus 436 SNPt 439 (581)
T PLN03129 436 SNPT 439 (581)
T ss_pred CCCC
Confidence 8665
No 481
>PRK15076 alpha-galactosidase; Provisional
Probab=93.86 E-value=0.053 Score=49.65 Aligned_cols=108 Identities=9% Similarity=0.010 Sum_probs=65.2
Q ss_pred CEEEEEecChHHHHHHH--HH---HhC-CCEEEEEcCCCCCCC-------------C----cccccChhhhhcCCcEEEE
Q 035615 80 MQVGIVRLGNIGSEVLN--RL---QAF-GFIISYNSRRKRPSV-------------L----FPYCANVYDLAVNSDVLVV 136 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDiv~~ 136 (223)
++|+|||.|.+|...+- .+ .++ |.+|..+|..++... + .....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955433 22 233 558999998764322 1 1124567889999999999
Q ss_pred eccCC--hhhh----------hcc-----------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 035615 137 CCALT--EQTH----------HII-----------------N-------KDVMAELGKGGMIINVGRGALIDEKEMLQFL 180 (223)
Q Consensus 137 ~~p~t--~~t~----------~li-----------------~-------~~~l~~mk~ga~lIN~arg~~vd~~al~~aL 180 (223)
+.-.. +.-+ +++ + .+.++...|++++||++..--+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 97542 1110 000 1 1234445689999999876655555555 22
Q ss_pred HcCCceEE
Q 035615 181 VQGDINGV 188 (223)
Q Consensus 181 ~~~~i~~a 188 (223)
...++.|.
T Consensus 161 ~~~rviG~ 168 (431)
T PRK15076 161 PGIKTVGL 168 (431)
T ss_pred CCCCEEEE
Confidence 33455543
No 482
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.85 E-value=0.15 Score=44.18 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---c---cChhhhh-----cCCcEEEEeccC
Q 035615 78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---C---ANVYDLA-----VNSDVLVVCCAL 140 (223)
Q Consensus 78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~el~-----~~aDiv~~~~p~ 140 (223)
.|.+|.|.| .|.+|+.+++.++.+|.+|++..++.++.+ ++.. + .++.+.+ ...|+++-++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 488999999 599999999999999999988776543321 1110 1 1233222 23678877664
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
. .. + ...++.++++..+|.++.
T Consensus 217 ~---~~-~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 G---EF-S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred H---HH-H-HHHHHHhCcCcEEEEecc
Confidence 1 11 2 567788899999998875
No 483
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.84 E-value=0.14 Score=42.81 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=31.8
Q ss_pred cCCCEEEEEecC---hHHHHHHHHHHhCCCEEEEEcCC
Q 035615 77 LGGMQVGIVRLG---NIGSEVLNRLQAFGFIISYNSRR 111 (223)
Q Consensus 77 l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~ 111 (223)
+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 789999999985 79999999999999999888775
No 484
>PRK09186 flagellin modification protein A; Provisional
Probab=93.83 E-value=0.13 Score=42.56 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=33.0
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+++|++.|.|. |.||+.+|+.|...|++|++.+|+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence 56899999995 89999999999999999998887654
No 485
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.83 E-value=0.84 Score=39.57 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRK 112 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~ 112 (223)
..|...+|.|+|+|.+|..+|+.|...|.+ +..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 468999999999999999999999999995 77877654
No 486
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.83 E-value=0.33 Score=44.50 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.7
Q ss_pred EEEEEecChHHHHHHHHHHhCCC------EEEEEcCCC
Q 035615 81 QVGIVRLGNIGSEVLNRLQAFGF------IISYNSRRK 112 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~~~G~------~V~~~~~~~ 112 (223)
+|.|||.|.+|..+++.|...|. ++.++|...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 48899999999999999999888 688877553
No 487
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.11 Score=43.10 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
++++|++.|.|. |.||+.+++.|...|++|+..+|++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999995 89999999999999999998888754
No 488
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=93.77 E-value=0.081 Score=41.48 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEEEecChHHHHHHHHHH-hCCCEEEEEc
Q 035615 81 QVGIVRLGNIGSEVLNRLQ-AFGFIISYNS 109 (223)
Q Consensus 81 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~ 109 (223)
+|||-|||+||+.+++.+. .-.++|.+++
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 7999999999999999987 4567877654
No 489
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.74 E-value=0.26 Score=42.61 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCCEEEEEe-cChHHHHHHHHHHhCCCEEEEEcCCCCCCC--------------------CcccccChhhhhcCCcEEEE
Q 035615 78 GGMQVGIVR-LGNIGSEVLNRLQAFGFIISYNSRRKRPSV--------------------LFPYCANVYDLAVNSDVLVV 136 (223)
Q Consensus 78 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~el~~~aDiv~~ 136 (223)
.|++|.|.| .|-||+.+++.|...|++|.+..|+..... ......+++++++.+|+|+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 589999999 699999999999999999986655443210 00112346677888998876
Q ss_pred ecc
Q 035615 137 CCA 139 (223)
Q Consensus 137 ~~p 139 (223)
+..
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 653
No 490
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.74 E-value=0.13 Score=44.47 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Ccc---cc--cChh--hh--hcCCcEEEEeccCCh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFP---YC--ANVY--DL--AVNSDVLVVCCALTE 142 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~---~~--~~l~--el--~~~aDiv~~~~p~t~ 142 (223)
.|.+|.|+|.|.+|+.+++.++..|++ |++.+++.+... +.. .. .+.. .. -+..|+++-+++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 478999999999999999999999998 777776543221 110 00 0110 11 245788887764221
Q ss_pred hhhhccCHHHHhcCCCCcEEEEcCCCc
Q 035615 143 QTHHIINKDVMAELGKGGMIINVGRGA 169 (223)
Q Consensus 143 ~t~~li~~~~l~~mk~ga~lIN~arg~ 169 (223)
...+.++.|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1244567778888888876543
No 491
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=93.70 E-value=0.21 Score=37.01 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=65.2
Q ss_pred CEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccChhhhhcCCcEEEEeccCChhhhhccCHHHH-hcC-C
Q 035615 80 MQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSVLFPYCANVYDLAVNSDVLVVCCALTEQTHHIINKDVM-AEL-G 157 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDiv~~~~p~t~~t~~li~~~~l-~~m-k 157 (223)
|+|.|+|-|.|+..+++.++.+|.+++..+..++. .+ .-...+|-+. ++|..+.....++.+.+ +-. +
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~-------~s--~~~~~ad~~~-~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT-------VS--THVDMADEAY-FEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT-------TG--HHHHHSSEEE-EEESSSGGGTTTSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc-------cc--ccccccccce-ecCcchhhhhhccHHHHhhHhhh
Confidence 68999999999999999999999996655443321 11 2244567664 34533333444443322 211 3
Q ss_pred CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 035615 158 KGGMIINVGRGALIDEKEMLQFLVQGDIN 186 (223)
Q Consensus 158 ~ga~lIN~arg~~vd~~al~~aL~~~~i~ 186 (223)
.++..+--|-|.+-....|.+++.+..+.
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~~gi~ 101 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACEDAGII 101 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHHTT-E
T ss_pred hcCcccccccchhHHHHHHHHHHHHCCCE
Confidence 47888889999999999999999887776
No 492
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.70 E-value=0.21 Score=43.77 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=43.9
Q ss_pred CEEEEEecChHHHHHHHHHHh--CCCEEEEEcCCCCCCCCc---------------cccc-ChhhhhcCCcEEEEec--c
Q 035615 80 MQVGIVRLGNIGSEVLNRLQA--FGFIISYNSRRKRPSVLF---------------PYCA-NVYDLAVNSDVLVVCC--A 139 (223)
Q Consensus 80 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~---------------~~~~-~l~el~~~aDiv~~~~--p 139 (223)
++|+|||.|.+|+++|-.|.. ++-++..+|...+..++. .... .-.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 589999999999999999854 344788898874433211 0011 1146688999999997 5
Q ss_pred CCh
Q 035615 140 LTE 142 (223)
Q Consensus 140 ~t~ 142 (223)
-.|
T Consensus 81 rKp 83 (313)
T COG0039 81 RKP 83 (313)
T ss_pred CCC
Confidence 444
No 493
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.69 E-value=0.24 Score=43.64 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCE-EEEEcCCCCCCC-----Cccc---c--cCh----hhhhc--CCcEEEEeccC
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFI-ISYNSRRKRPSV-----LFPY---C--ANV----YDLAV--NSDVLVVCCAL 140 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~~---~--~~l----~el~~--~aDiv~~~~p~ 140 (223)
.|++|.|.|.|.+|...++.++.+|.+ |++.+++.++.+ ++.. . .+. .++.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 488999999999999999999999995 888877654321 1111 0 111 12222 47888877642
Q ss_pred ChhhhhccCHHHHhcCCCCcEEEEcCC
Q 035615 141 TEQTHHIINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 141 t~~t~~li~~~~l~~mk~ga~lIN~ar 167 (223)
+.+ + ...+..++++..+|.++-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 221 2 335667788888888764
No 494
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.68 E-value=0.33 Score=41.82 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCCEEEEEecChHHHHHHHHHHhCCCEEEEEcCCCCCCC-----Cccc---cc--C-hhhhhcCCcEEEEeccCChhhhh
Q 035615 78 GGMQVGIVRLGNIGSEVLNRLQAFGFIISYNSRRKRPSV-----LFPY---CA--N-VYDLAVNSDVLVVCCALTEQTHH 146 (223)
Q Consensus 78 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~-l~el~~~aDiv~~~~p~t~~t~~ 146 (223)
.|.+|.|+|.|.+|+.+++.++.+|++|++.+++..... +... .. + ....-...|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 478999999999999999999999999988877654321 1110 00 0 1111235788877654211
Q ss_pred ccCHHHHhcCCCCcEEEEcCC
Q 035615 147 IINKDVMAELGKGGMIINVGR 167 (223)
Q Consensus 147 li~~~~l~~mk~ga~lIN~ar 167 (223)
...+.+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12456777888888888763
No 495
>PRK06196 oxidoreductase; Provisional
Probab=93.67 E-value=0.15 Score=44.13 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=33.7
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999996 89999999999999999999888753
No 496
>PRK08589 short chain dehydrogenase; Validated
Probab=93.67 E-value=0.19 Score=42.50 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=32.7
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRR 111 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~ 111 (223)
.+.||++.|.|. |.||+.+++.|...|++|+..+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 367999999996 899999999999999999998876
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.22 Score=41.84 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.1
Q ss_pred ccCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 76 KLGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 76 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
++.|+++.|.|. |.||+.+++.|...|++|+..+|++.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~ 40 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA 40 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 367899999996 99999999999999999998887653
No 498
>PRK06153 hypothetical protein; Provisional
Probab=93.64 E-value=0.083 Score=47.54 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=32.2
Q ss_pred cccCCCEEEEEecChHHHHHHHHHHhCCC-EEEEEcCC
Q 035615 75 FKLGGMQVGIVRLGNIGSEVLNRLQAFGF-IISYNSRR 111 (223)
Q Consensus 75 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 111 (223)
..|++++|+|||+|.+|..++..|.+.|. ++..+|..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 36899999999999999999999999998 57777643
No 499
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.63 E-value=0.18 Score=44.43 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=56.1
Q ss_pred EEEEEec-ChHHHHHHHHHHhCCC-------EEEEEcCCCCC--CCC-------cc-------c-ccChhhhhcCCcEEE
Q 035615 81 QVGIVRL-GNIGSEVLNRLQAFGF-------IISYNSRRKRP--SVL-------FP-------Y-CANVYDLAVNSDVLV 135 (223)
Q Consensus 81 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~~-------~-~~~l~el~~~aDiv~ 135 (223)
+|+|||. |.+|..+|..|...|. ++..+|+.+.. ..+ .. . ..+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999886444 48888875432 211 00 0 114467889999999
Q ss_pred EeccCC--h-hhh-hcc--C-------HHHHhcC-CCCcEEEEcCCCcccCHH
Q 035615 136 VCCALT--E-QTH-HII--N-------KDVMAEL-GKGGMIINVGRGALIDEK 174 (223)
Q Consensus 136 ~~~p~t--~-~t~-~li--~-------~~~l~~m-k~ga~lIN~arg~~vd~~ 174 (223)
++.-.. + +|+ .++ | .+.+... ++.+++|.++ ..+|.-
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~ 131 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTN 131 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence 876332 1 111 111 1 1233344 4778888877 444433
No 500
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.19 Score=41.64 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred cCCCEEEEEec-ChHHHHHHHHHHhCCCEEEEEcCCCC
Q 035615 77 LGGMQVGIVRL-GNIGSEVLNRLQAFGFIISYNSRRKR 113 (223)
Q Consensus 77 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 113 (223)
+.+|++.|.|. |.||+.+|+.|...|++|++.+|++.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 57899999995 89999999999999999999988653
Done!