BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035616
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R EC C+ R+ L M Q + W
Sbjct: 275 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSECCCSLARHLMTLVMDPLQTASVQW 329
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 330 FERTLDDSANRRICLAEAFLTADTILN 356
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 294 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVMDPLQTASVQW 348
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 349 FERTLDDSANRRICLAEAFLTADTILN 375
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 294 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVMDPLQTASVQW 348
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 349 FERTLDDSANRRICLAEAFLTADTILN 375
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 275 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVMDPLQTASVQW 329
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 330 FERTLDDSANRRICLAEAFLTADTILN 356
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 120 QGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILANS---YDRNAKLLNGT 170
+G++EH + EYF+ +GV + ++++ R + I+ ++ +L+GT
Sbjct: 28 EGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGT 81
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 120 QGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILANS---YDRNAKLLNGT 170
+G++EH + EYF+ +GV + ++++ R + I+ ++ +L+GT
Sbjct: 48 EGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGT 101
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 120 QGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILANS---YDRNAKLLNGT 170
+G++EH + EYF+ +GV + ++++ R + I+ ++ +L+GT
Sbjct: 62 EGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGT 115
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 94 VYNLDWFTSASKNECSAAV----GFKWMMNQGLMEHHNDIAEYFKK--KGVSAIFLIRRN 147
+Y D +T ++ E A V G + + GLM+ +D E K + F IR +
Sbjct: 131 IYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDD 190
Query: 148 LLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTINATLLIPELKQIEQTT 207
++ + Y N KS E K PTI+A PE Q++
Sbjct: 191 ----YANLHSKEYSEN--------KSFCEDLTEGKFSF---PTIHAIWSRPESTQVQNIL 235
Query: 208 AKAIEYFKSTRHIVFYYEDLITNRATLKEVQEFLRLAYRELTSR 251
+ E ++ V Y ED+ + T ++E AY+++ +R
Sbjct: 236 RQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDAR 279
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 108 CSAAVGFKWMMNQGLMEHHNDIAEYFKKKGV 138
C A +G W GLM +N IAE +K GV
Sbjct: 865 CGAIIG--WTRGTGLMSANNIIAEGIEKMGV 893
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting
Protein 1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting
Protein 1 In Complex With Nadph
Length = 375
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 30 QQSEIPFLHYPNPVTFNREECACNPVRYFAILSMQRSGSGWFETLLNIKHRRINI 84
Q +P +HYPN V + NP+ ++M+ SG+ T LN+K +++
Sbjct: 40 QNMMMPIIHYPNEVIVKVHAASVNPID----VNMR---SGYGATALNMKRDPLHV 87
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 108 CSAAVGFKWMMNQGLMEHHNDIAEYFKKKGV 138
C A +G W GLM +N IAE +K GV
Sbjct: 865 CGAIIG--WTRGTGLMSANNIIAEGIEKMGV 893
>pdb|2C1G|A Chain A, Structure Of Streptococcus Pneumoniae Peptidoglycan
Deacetylase (Sppgda)
Length = 431
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 21 DQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILS---MQRSGSGWFETLLNI 77
DQ + N + + YP+PV N EE A +F ++ + + +++ +
Sbjct: 173 DQDLSAWNFDYKDSQIILYPSPVVENLEEIALPVSAFFDVIQSSYLLEKDAALYQSYFDK 232
Query: 78 KHRRI 82
KH+++
Sbjct: 233 KHQKV 237
>pdb|2C1I|A Chain A, Structure Of Streptococcus Pnemoniae Peptidoglycan
Deacetylase (Sppgda) D 275 N Mutant
Length = 431
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 21 DQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILS---MQRSGSGWFETLLNI 77
DQ + N + + YP+PV N EE A +F ++ + + +++ +
Sbjct: 173 DQDLSAWNFDYKDSQIILYPSPVVENLEEIALPVSAFFDVIQSSYLLEKDAALYQSYFDK 232
Query: 78 KHRRI 82
KH+++
Sbjct: 233 KHQKV 237
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 99 WFTSASKNE---CSAAVGFKWMMNQGLMEHHNDIAEYFKKKGV 138
W + + N+ C A +G W GLM +N IAE +K GV
Sbjct: 654 WHSESWANQLTVCGAIIG--WTRGTGLMSANNIIAEGIEKMGV 694
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 83 NISSIVSTMDRVYNLDWFTSASKNECSAAVGFKWMMNQG---LMEHHNDIAEYFKKKGVS 139
+ SI + + + Y L T+AS+NE +W G ++ H + FK +G+
Sbjct: 162 GVGSIATQIAKAYGLRVITTASRNET-----IEWTKKMGADIVLNHKESLLNQFKTQGIE 216
Query: 140 AI 141
+
Sbjct: 217 LV 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,081,917
Number of Sequences: 62578
Number of extensions: 302565
Number of successful extensions: 768
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 20
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)