BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035616
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06237|NOH4_RHIML Nodulation protein H OS=Rhizobium meliloti GN=nodH PE=4 SV=1
Length = 247
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 30/248 (12%)
Query: 54 PVRYFAILSMQRSGSGWFETLLNIKHRRINISSIVSTMD-------RVYNLD-------- 98
P R FAIL+M+R+G+ + E L+N ++ +++T D R+ D
Sbjct: 7 PPRPFAILAMRRTGTHYLEELVNEHPNVLSNGELLNTYDTNWPDKERLLLSDRELLERAC 66
Query: 99 WFTSASKNECSAAVGFKWMMNQGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILAN 158
W ++ VG K + E + AE G+ I +IRRN L + S +
Sbjct: 67 WRYPPHSDKKVTHVGCK-INEPQFQERPSFFAELTAWPGLKVILVIRRNTLESLRSFVQA 125
Query: 159 SYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTINATLLIPELKQIEQTTAKAIEYFKSTR 218
R KS +P +L T A K + A+ + F S+R
Sbjct: 126 RQTRQWLQF----KSDSSAPPPPVMLPFA--TCEAY-----FKAADDFHARVVNAFDSSR 174
Query: 219 HIVFYYEDLITNRAT-LKEVQEFLRLAYRELTSRQV--KIHSGPLSKQVENWDDVQKALK 275
+ YE L+ + + V +FL +L R + + + PL + V N+ +++
Sbjct: 175 IRLIEYERLLRDPVPCVATVLDFLGAPALQLADRGILRRQETRPLDQTVRNFHELRVHFA 234
Query: 276 GTSYERFL 283
Y RF
Sbjct: 235 NGPYARFF 242
>sp|P54822|PUR8_MOUSE Adenylosuccinate lyase OS=Mus musculus GN=Adsl PE=2 SV=2
Length = 484
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L+M Q + W
Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMALTMDPLQTASVQW 326
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 327 FERTLDDSANRRICLAEAFLTADTILN 353
>sp|A0Q1R8|LEPA_CLONN Elongation factor 4 OS=Clostridium novyi (strain NT) GN=lepA PE=3
SV=1
Length = 601
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 107 ECSAAVGFKWMMNQGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILANSYDRNAKL 166
E S A+GF + + H I E +++ +++ S++ N Y R+ ++
Sbjct: 334 ETSIALGFGFRCGFLGLLHMEIIQERIERE-------FNLDIITTAPSVIYNIYKRDGEM 386
Query: 167 LNGTHKSHVHSPAEAKILAKYKPTINATLLIP--------ELKQIEQTTAKAIEYFKSTR 218
L T+ +++ P E + + + P + A+++ P EL Q ++ T +EY ++TR
Sbjct: 387 LKITNPTNMPDPTEIEKMEE--PVVKASIITPSDFVGAVMELCQNKRGTFIDMEYIETTR 444
Query: 219 HIVFYY 224
+V YY
Sbjct: 445 VVVNYY 450
>sp|A3KN12|PUR8_BOVIN Adenylosuccinate lyase OS=Bos taurus GN=ADSL PE=2 SV=1
Length = 490
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 278 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMALVMDPLQTASVQW 332
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D V N
Sbjct: 333 FERTLDDSANRRICLAEAFLTADTVLN 359
>sp|Q8HXY5|PUR8_MACFA Adenylosuccinate lyase OS=Macaca fascicularis GN=ADSL PE=2 SV=1
Length = 484
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVMDPLQTASVQW 326
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 327 FERTLDDSANRRICLAEAFLTADTILN 353
>sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2
Length = 484
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAILSM---QRSGSGW 70
L N+K +++P + I S +P+ NP+ R E C+ R+ L M Q + W
Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVMDPLQTASVQW 326
Query: 71 FE-TLLNIKHRRINISSIVSTMDRVYN 96
FE TL + +RRI ++ T D + N
Sbjct: 327 FERTLDDSANRRICLAEAFLTADTILN 353
>sp|P21265|PUR8_CHICK Adenylosuccinate lyase OS=Gallus gallus GN=ADSL PE=2 SV=2
Length = 485
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 14 LLNIKVIDQPCQSTNIQQSEIPFLHYPNPVTFNREECACNPVRYFAIL---SMQRSGSGW 70
L N+K I++P + I S +P+ NP+ R E C+ R+ L +Q + W
Sbjct: 273 LANLKEIEEPFEKDQIGSSAMPYKR--NPM---RSERCCSLARHLMTLVLDPLQTASVQW 327
Query: 71 FE-TLLNIKHRRINISSIVSTMD 92
FE TL + +RR+ ++ T D
Sbjct: 328 FERTLDDSANRRVCLAEAFLTAD 350
>sp|G8BAW7|FAS2_CANPC Fatty acid synthase subunit alpha OS=Candida parapsilosis (strain
CDC 317 / ATCC MYA-4646) GN=FAS2 PE=2 SV=1
Length = 1884
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 86 SIVSTMDRVYNLDWFTSASKNECSAAVGFKWMMNQGLMEHHNDIAEYFKKKGV 138
S+ + +R Y+ DW T + C A +G W GLM +N IAE +K GV
Sbjct: 844 SLETLFNRWYSEDWGTKLTI--CGAIIG--WTRGTGLMSANNIIAEGIEKLGV 892
>sp|Q5S2C4|NCKP1_ARATH Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2
Length = 1425
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 212 EYFKSTRHIVFYYEDLITNRATLKEVQEFLRL--AYR-ELTSRQVKIHSGPLSKQVE 265
+YFKSTR + Y+ + +T+ LKE+Q F+R+ Y + R +K+H+ L +E
Sbjct: 961 KYFKSTRPVGGYFAESVTD---LKELQAFVRIFGGYGVDRLDRMMKVHTAALVNCIE 1014
>sp|P43098|FAS2_CANAX Fatty acid synthase subunit alpha OS=Candida albicans GN=FAS2 PE=3
SV=1
Length = 1885
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 86 SIVSTMDRVYNLDWFTSASKNECSAAVGFKWMMNQGLMEHHNDIAEYFKKKGV 138
S+ + +R Y+ DW + + C A +G W GLM +N IAE +K GV
Sbjct: 845 SLETLFNRWYSEDWGSKLTV--CGAVIG--WTRGTGLMSANNIIAEGIEKLGV 893
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,739,406
Number of Sequences: 539616
Number of extensions: 3716486
Number of successful extensions: 9788
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9784
Number of HSP's gapped (non-prelim): 20
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)