Query 035616
Match_columns 289
No_of_seqs 131 out of 141
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09037 Sulphotransf: Stf0 su 100.0 3.3E-30 7.1E-35 236.7 9.8 202 57-270 1-241 (245)
2 COG4424 Uncharacterized protei 99.6 1E-15 2.2E-20 137.4 9.6 193 53-257 3-229 (250)
3 PF00685 Sulfotransfer_1: Sulf 99.1 9.8E-10 2.1E-14 97.3 10.3 100 130-245 97-198 (267)
4 PLN02164 sulfotransferase 98.2 2.2E-06 4.8E-11 83.0 6.6 29 218-246 233-262 (346)
5 KOG1584 Sulfotransferase [Gene 97.5 0.00022 4.8E-09 67.9 7.2 160 55-246 39-218 (297)
6 PF13469 Sulfotransfer_3: Sulf 97.5 0.00063 1.4E-08 56.8 9.0 21 56-76 1-22 (215)
7 KOG3988 Protein-tyrosine sulfo 96.6 0.0026 5.6E-08 60.7 4.7 55 191-246 204-263 (378)
8 KOG3703 Heparan sulfate N-deac 96.5 0.009 2E-07 61.4 8.2 179 48-245 588-791 (873)
9 KOG3704 Heparan sulfate D-gluc 95.1 0.065 1.4E-06 51.1 6.8 100 136-245 189-289 (360)
10 COG3551 Uncharacterized protei 82.7 3.8 8.2E-05 39.9 6.6 51 108-160 106-156 (402)
11 PRK10017 colanic acid biosynth 33.9 2.6E+02 0.0057 28.0 9.1 126 127-275 263-401 (426)
12 PF07582 AP_endonuc_2_N: AP en 31.6 1.3E+02 0.0029 21.8 4.8 34 209-242 7-41 (55)
13 smart00303 GPS G-protein-coupl 29.4 27 0.00059 24.2 0.9 19 45-63 27-45 (49)
14 PRK09767 hypothetical protein; 28.6 83 0.0018 26.1 3.8 55 189-245 59-114 (117)
15 PF09686 Plasmid_RAQPRD: Plasm 28.6 1.2E+02 0.0027 23.7 4.5 52 195-246 15-69 (81)
16 PLN00154 histone H2A; Provisio 27.1 25 0.00055 30.2 0.5 47 233-279 65-117 (136)
17 KOG4601 Uncharacterized conser 25.7 41 0.00089 31.7 1.6 60 55-125 112-182 (264)
18 cd01038 Endonuclease_DUF559 Do 25.4 84 0.0018 25.1 3.2 33 208-241 74-107 (108)
19 PF05301 Mec-17: Touch recepto 23.2 1.1E+02 0.0023 26.0 3.5 41 55-97 50-101 (120)
20 COG2509 Uncharacterized FAD-de 21.9 46 0.001 34.2 1.3 19 58-76 221-239 (486)
21 PF10150 RNase_E_G: Ribonuclea 21.8 3.6E+02 0.0078 25.3 7.2 86 190-275 53-158 (271)
22 KOG4721 Serine/threonine prote 21.6 34 0.00074 36.5 0.3 46 59-106 77-138 (904)
23 PLN00157 histone H2A; Provisio 21.5 35 0.00075 29.3 0.3 49 232-280 51-105 (132)
24 PF01825 GPS: Latrophilin/CL-1 21.3 51 0.0011 22.3 1.1 17 46-62 28-44 (44)
25 PF03128 CXCXC: CXCXC repeat; 21.1 51 0.0011 17.5 0.8 12 42-53 1-12 (14)
No 1
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=99.96 E-value=3.3e-30 Score=236.67 Aligned_cols=202 Identities=28% Similarity=0.349 Sum_probs=113.4
Q ss_pred eEEEEecCCCcccHHHhhcc----Cc---------ccccc-----cchhHHHHHHHhcccchhhcccccc--cceeeEEE
Q 035616 57 YFAILSMQRSGSGWFETLLN----IK---------HRRIN-----ISSIVSTMDRVYNLDWFTSASKNEC--SAAVGFKW 116 (289)
Q Consensus 57 ~FvIls~~RSGS~~LetlLN----i~---------~rr~~-----~ss~~~~ld~i~~l~~~~~a~~~~~--~~avGFK~ 116 (289)
.|+|+++|||||+||+++|| +| ..|++ +++...+.|.....+|+..+.+..+ .+++||||
T Consensus 1 ~yii~~t~RSGStlL~~~L~~tg~~G~p~E~F~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ngv~G~KL 80 (245)
T PF09037_consen 1 SYIICSTQRSGSTLLCELLRATGVAGRPQEFFQSPQPREWFAGVGLPSDPGTPDKEDPDEWLDAALARGRTPNGVFGFKL 80 (245)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHCTSS-----TT----HHHHTTT--------------HHHHHHHHHHHTB-TTS-EEEEE
T ss_pred CeEEEeCCCCcHHHHHHHHHhCcCCCCchHhcCCccHHHHHhhcCCcccccccccccHHHHHHHHHHhcCCCCCeEEEEe
Confidence 48999999999999999999 33 12333 2223345566667778877776654 58999999
Q ss_pred eccCc-cc------------ccchhH-HHHhhccCeEEEEEeccchhHHHHHHHHhhccchhhh-ccCcccccccChHHH
Q 035616 117 MMNQG-LM------------EHHNDI-AEYFKKKGVSAIFLIRRNLLRRMISILANSYDRNAKL-LNGTHKSHVHSPAEA 181 (289)
Q Consensus 117 m~nQg-~~------------~h~~~~-~e~l~~~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~-l~gthkshv~s~~eA 181 (289)
|.||- ++ ..+.++ .+.+. ++++|+|.|||+|+|+||+.+|..|+.|.. .+|+.+.+++..
T Consensus 81 m~~q~~~~~~~~~~l~~~~~~d~~~~i~~~~~--~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~--- 155 (245)
T PF09037_consen 81 MWNQLPLLIRRLAHLYPGRSSDHLRFIEDLFG--DVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPP--- 155 (245)
T ss_dssp EGGGHHHHHHHHTTS-TT---SSHHHHHHHHT--S-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT-------
T ss_pred cHhhhHHHHHHHhhhcccccccHHHHHHHHcC--CeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCcccccccc---
Confidence 99992 11 111223 34444 399999999999999999999999988864 234443333322
Q ss_pred hhhhcccccCChhhhHHHHHHHHHHHHHHHHHh--CCCceEEEEeecccCCHH-HHHHHHHHhcCCccccCccccccccC
Q 035616 182 KILAKYKPTINATLLIPELKQIEQTTAKAIEYF--KSTRHIVFYYEDLITNRA-TLKEVQEFLRLAYRELTSRQVKIHSG 258 (289)
Q Consensus 182 ~~la~~k~~~d~~~Li~~l~~~e~~~~~~l~~~--~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~~~L~s~~~Ki~~~ 258 (289)
.++.+|.+++...+.++++..+.+..+| .+.+++.|+||||++||. ++++|++||||++.... .++....
T Consensus 156 -----~~~~yd~~~i~~~i~~i~~~~~~w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~~~--~~~~~~~ 228 (245)
T PF09037_consen 156 -----RKPRYDFEEIAHLIDRIEDQEAFWRNWFARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPLAP--IVKPPLK 228 (245)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGGS----------
T ss_pred -----ccceeCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcccc--cCCCCce
Confidence 1489999999888888888888888887 456789999999999998 77999999999887432 2233444
Q ss_pred Chhh-hccCHHHH
Q 035616 259 PLSK-QVENWDDV 270 (289)
Q Consensus 259 pL~~-~V~N~dEv 270 (289)
++++ +.++|.+-
T Consensus 229 kqsd~~s~eW~~r 241 (245)
T PF09037_consen 229 KQSDERSEEWVER 241 (245)
T ss_dssp --------HHHHH
T ss_pred ecCCCChHHHHHH
Confidence 4444 45555543
No 2
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=1e-15 Score=137.40 Aligned_cols=193 Identities=19% Similarity=0.223 Sum_probs=124.9
Q ss_pred CCCceEEEEecCCCcccHHHhhcc----Ccc---------cccccchhHHHHH-----HHhcccchhhccc--cccccee
Q 035616 53 NPVRYFAILSMQRSGSGWFETLLN----IKH---------RRINISSIVSTMD-----RVYNLDWFTSASK--NECSAAV 112 (289)
Q Consensus 53 ~p~~~FvIls~~RSGS~~LetlLN----i~~---------rr~~~ss~~~~ld-----~i~~l~~~~~a~~--~~~~~av 112 (289)
.-||.++|++++||||+||..||| +|+ -+++.+..+..+| ...--+||..+.. ...++++
T Consensus 3 ~~fr~Ylilt~pRSGStlLckllaatG~sG~p~sff~rp~~sEWla~~~~pld~g~pea~~~va~f~aai~kgstpngvf 82 (250)
T COG4424 3 RAFRPYLILTTPRSGSTLLCKLLAATGCSGEPQSFFQRPQPSEWLAQLLDPLDPGTPEAATPVAWFEAAITKGSTPNGVF 82 (250)
T ss_pred ccccceeEecCCCCcchHHHHHHHhcCCCCCchhhhcCCCHHHHHHhhccccCCCCcccccHHHHHHHHHHcCCCCCccc
Confidence 358999999999999999999999 441 1333221111111 1111124444322 2356899
Q ss_pred eEEEeccC-----cccccc----hhHHHHhhc-cCeEEEEEeccchhHHHHHHHHhhccchhhhccCcccccccChHHHh
Q 035616 113 GFKWMMNQ-----GLMEHH----NDIAEYFKK-KGVSAIFLIRRNLLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAK 182 (289)
Q Consensus 113 GFK~m~nQ-----g~~~h~----~~~~e~l~~-~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~ 182 (289)
|.|+|.|| .+.--+ .++.-...- ..+-.|+|.|+|.|+|+||...+.+|+-|. .|+... |
T Consensus 83 GlkLmrn~d~l~q~lav~lp~~ssD~~r~e~afg~~lfvhl~R~dkv~QAvSl~rA~QTglwh-------ahpdG~--a- 152 (250)
T COG4424 83 GLKLMRNQDALLQQLAVQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQAVSLWRAVQTGLWH-------AHPDGP--A- 152 (250)
T ss_pred hhhhccchHHHHHHHHHhCccccchHHHHHHHhCCeeEEEeecchHHHHHHHHHHHHHhccee-------ccCCCC--C-
Confidence 99999994 331112 222222222 467889999999999999999977765442 233321 1
Q ss_pred hhhcccccCChhhhHHHHHHHHHHHHHHHHHhC--CCceEEEEeecccCCHH-HHHHHHHHhcCCcc-ccCcccccccc
Q 035616 183 ILAKYKPTINATLLIPELKQIEQTTAKAIEYFK--STRHIVFYYEDLITNRA-TLKEVQEFLRLAYR-ELTSRQVKIHS 257 (289)
Q Consensus 183 ~la~~k~~~d~~~Li~~l~~~e~~~~~~l~~~~--~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~~-~L~s~~~Ki~~ 257 (289)
..-.|.+|.+.+-..+..+++..+.+...|. +...+.|.||.|-.||. .+..|+|-|||++. .+.+...||--
T Consensus 153 --p~s~p~Ydfe~Ia~~~~~lrdydaaWn~wfa~qGiep~riaYe~Lsadp~aava~~~ealgv~~p~a~~p~~a~qad 229 (250)
T COG4424 153 --PDSQPVYDFEAIAHIIRNLRDYDAAWNAWFAEQGIEPIRIAYEVLSADPTAAVASVLEALGVDPPLAPAPMLARQAD 229 (250)
T ss_pred --CccccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCcCchHHHhhh
Confidence 1124899999876666666555555555554 45789999999999998 67999999999886 44444445543
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.06 E-value=9.8e-10 Score=97.30 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=56.9
Q ss_pred HHHhhccCeEEEEEeccchhHHHHHHHHhhccchhhhccCcccccccChHHHhhhhcc-cccCChhhhHHHHHHHHHHHH
Q 035616 130 AEYFKKKGVSAIFLIRRNLLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKY-KPTINATLLIPELKQIEQTTA 208 (289)
Q Consensus 130 ~e~l~~~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~~la~~-k~~~d~~~Li~~l~~~e~~~~ 208 (289)
...+..+.+|+|++. ||+.+.++|....... .+..+. ....-+ +....+ +...... .+-+...
T Consensus 97 ~~~~~~~~~KiI~iv-RdP~d~~~S~~~~~~~-----~~~~~~--~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~ 160 (267)
T PF00685_consen 97 PKKLLFPNAKIIYIV-RDPRDVIVSRYKHSWR-----SNPFSD--PGQRFE-EFVDWFLQPRLLYG-------SWADHLK 160 (267)
T ss_dssp HHHHHHTTEEEEEEE---HHHHHHHHHHHHHH-----BTTSTT--HHSHHH-HHHHHHHTTHSTTS-------CHHHHHH
T ss_pred cccccccccccceec-ccccchhHHHHHHHHh-----cccccc--cchhhh-hhhhhhhccccccc-------ccccccc
Confidence 344557999999976 6999999999983211 111110 000000 000000 0011111 1122233
Q ss_pred HHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhcCCc
Q 035616 209 KAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLRLAY 245 (289)
Q Consensus 209 ~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~ 245 (289)
.+++.+...+.+.|.||||+.||. ++.+|++|||++.
T Consensus 161 ~~~~~~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~ 198 (267)
T PF00685_consen 161 SWLSSFDRDNVLIIRYEDLVADPEKELKRICDFLGLPF 198 (267)
T ss_dssp HHHHHTTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS-
T ss_pred chhhhhccchhhhhcchhhhhhhhHHHHHHHHHHhhcc
Confidence 445566666899999999999997 8899999999993
No 4
>PLN02164 sulfotransferase
Probab=98.22 E-value=2.2e-06 Score=83.02 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=26.5
Q ss_pred ceEEEEeecccCCHH-HHHHHHHHhcCCcc
Q 035616 218 RHIVFYYEDLITNRA-TLKEVQEFLRLAYR 246 (289)
Q Consensus 218 ~~l~v~YEDLv~d~~-~l~~V~~FLgVp~~ 246 (289)
..|.|.||||.+|+. .+.+|++|||+|..
T Consensus 233 ~VLfl~YEDmk~D~~~~v~ria~FLG~~~s 262 (346)
T PLN02164 233 RILFLKYETMRADPLPYVKRLAEFMGYGFT 262 (346)
T ss_pred cEEEEEHHHHHHhHHHHHHHHHHHhCCCCc
Confidence 689999999999987 78999999999764
No 5
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=97.54 E-value=0.00022 Score=67.87 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred CceEEEEecCCCcccHHHhhcc-Ccccccccch-hHHHHHHHhcccchhhcc----cccccceeeEEEeccCccccc--c
Q 035616 55 VRYFAILSMQRSGSGWFETLLN-IKHRRINISS-IVSTMDRVYNLDWFTSAS----KNECSAAVGFKWMMNQGLMEH--H 126 (289)
Q Consensus 55 ~~~FvIls~~RSGS~~LetlLN-i~~rr~~~ss-~~~~ld~i~~l~~~~~a~----~~~~~~avGFK~m~nQg~~~h--~ 126 (289)
-+-++|.|-|+|||.||-+|.- |.+|-+..+. -..++. ..+++..+. ......+--.. ..+-+.+| .
T Consensus 39 ~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~~~pL~~---~~P~~e~p~~e~~~~~~~~~~~l~--SPRl~kTHlP~ 113 (297)
T KOG1584|consen 39 PDDVIIATYPKSGTTWLQELTFLILNRGDFEKAKRHPLLE---RNPHLEVPFLELQLYGNDSAPDLP--SPRLFKTHLPF 113 (297)
T ss_pred CCCEEEEecCCCchHHHHHHHHHHHcCCCcccccCCchhh---cCCceeecccccccccccccccCC--CCcceeccCCh
Confidence 3568999999999999999876 2222111100 000110 111111110 00000000000 11224444 3
Q ss_pred hhHHHHhhccCeEEEEEeccchhHHHHHHHHhhccchhhhccCcccccccChHHHhhhhcccccCChhhhHH--------
Q 035616 127 NDIAEYFKKKGVSAIFLIRRNLLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTINATLLIP-------- 198 (289)
Q Consensus 127 ~~~~e~l~~~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~~la~~k~~~d~~~Li~-------- 198 (289)
.-+-+.+.+.+||||++- ||+=+-+||.--=.. ..+.+++. .- .++.++
T Consensus 114 ~lLp~s~~~~~cKvVYv~-RNpKD~~VSy~hf~~--~~~~~~~~-------------------~~-~e~~fe~F~~G~~~ 170 (297)
T KOG1584|consen 114 QLLPESLKESKCKVVYVC-RNPKDVLVSYYHFNR--MLKTQPGP-------------------GT-FEEFFESFCNGVVP 170 (297)
T ss_pred hhcchhhhcCCCcEEEEe-cCccceeeeHHHHHh--hhccCCCC-------------------Cc-HHHHHHHHhCCcCC
Confidence 455678888999999965 799999999876211 01111110 00 222222
Q ss_pred ---HHHHHHHHHHHHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhcCCcc
Q 035616 199 ---ELKQIEQTTAKAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLRLAYR 246 (289)
Q Consensus 199 ---~l~~~e~~~~~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~~ 246 (289)
..+++...+. .-...+.|.+.|||+.+||. .+.+|++|||.|..
T Consensus 171 ~Gp~~dHVl~~W~----~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~ 218 (297)
T KOG1584|consen 171 YGPWWDHVLGYWE----LEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFT 218 (297)
T ss_pred cCChHHHHHHHHH----hcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCC
Confidence 1122222221 22345789999999999988 78999999999875
No 6
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=97.51 E-value=0.00063 Score=56.81 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.1
Q ss_pred ceEEEEecCCCcccHHH-hhcc
Q 035616 56 RYFAILSMQRSGSGWFE-TLLN 76 (289)
Q Consensus 56 ~~FvIls~~RSGS~~Le-tlLN 76 (289)
++.+|++++||||++|. .||+
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~ 22 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLS 22 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHC
T ss_pred CeEEEECCCCCcHHHHHHHHHc
Confidence 46899999999999999 8885
No 7
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0026 Score=60.71 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=41.8
Q ss_pred CChhhhHHHH----HHHHHHHHHHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhcCCcc
Q 035616 191 INATLLIPEL----KQIEQTTAKAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLRLAYR 246 (289)
Q Consensus 191 ~d~~~Li~~l----~~~e~~~~~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~~ 246 (289)
||.....+.+ +.+|.++.++.+. +..+.+.||||.|+.-|+ .|.+|.+||++|..
T Consensus 204 fdlssyr~c~tkWN~aie~M~~QC~~v-g~~~Cl~VyYEqLVlhPe~~mr~Il~FLdipw~ 263 (378)
T KOG3988|consen 204 FDLSSYRQCMTKWNQAIEVMYFQCMEV-GKKKCLKVYYEQLVLHPEEWMRRILKFLDIPWS 263 (378)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHhCHHHHHHHHHHHhCCCcH
Confidence 5555544444 4678787676655 545899999999999998 67999999999973
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.009 Score=61.44 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=99.8
Q ss_pred CCccCCCCceEEEEecCCCcccHHHhhccCccc-ccccchhHHHHHHHh---------cccchhhcc--cccccceeeEE
Q 035616 48 EECACNPVRYFAILSMQRSGSGWFETLLNIKHR-RINISSIVSTMDRVY---------NLDWFTSAS--KNECSAAVGFK 115 (289)
Q Consensus 48 ~~~~~~p~~~FvIls~~RSGS~~LetlLNi~~r-r~~~ss~~~~ld~i~---------~l~~~~~a~--~~~~~~avGFK 115 (289)
.|=.|...-.|.|+.-|.|||.=|-..|-||+. .+|.- .-++.+++- ..||+..-- ....+.-+=|.
T Consensus 588 kektCd~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~p-sp~tFEEvQFFng~NY~kGidWYMdfFP~psn~~tdf~FE 666 (873)
T KOG3703|consen 588 KEKTCDRLPKFLIIGPQKTGTTALYLFLSMHPSISSNTP-SPETFEEVQFFNGNNYHKGIDWYMDFFPVPSNTTTDFLFE 666 (873)
T ss_pred cccCcccccceEEEcCcccchhHHHHHHhhCcchhcCCC-CCCchhheeeccCCccccchhhHHhcCCCCccccchheee
Confidence 456788999999999999999999999999973 12221 233444432 344544311 01011111111
Q ss_pred EeccCcccccchhHHHHhhc--cCeEEEEEeccchhHHHHHHHHhhccchhhhccCcccccccChHHHhhhhcccccCC-
Q 035616 116 WMMNQGLMEHHNDIAEYFKK--KGVSAIFLIRRNLLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTIN- 192 (289)
Q Consensus 116 ~m~nQg~~~h~~~~~e~l~~--~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~~la~~k~~~d- 192 (289)
- .-..++ .+..-.-.+. |..|||..+ -|+-+|+-||.+.+.. |-..| |-.-.-|.+--+
T Consensus 667 K--SAtYFd-se~aPkraasLvP~AKIvtIL-inPadRAYSWyQHqra---------H~Dpv-----Al~~~fyeVIsas 728 (873)
T KOG3703|consen 667 K--SATYFD-SEVAPKRAASLVPHAKIVTIL-INPADRAYSWYQHQRA---------HEDPV-----ALNYSFYEVISAS 728 (873)
T ss_pred c--cccccC-CcccchhhhhhCCcceEEEEE-eChHHhhhHHHHHHhh---------cCCcc-----eecceeEEEEecC
Confidence 1 001111 1111111111 566665544 5999999999984321 10000 100011111111
Q ss_pred --hhhhHHHHHH-------HHHHHHHHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhcCCc
Q 035616 193 --ATLLIPELKQ-------IEQTTAKAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLRLAY 245 (289)
Q Consensus 193 --~~~Li~~l~~-------~e~~~~~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~ 245 (289)
+..-+..++. +-.-..+++.+|.....+.|.=+.|-.||. +|+.|+.||||.+
T Consensus 729 ~~aps~lk~lq~RClvpG~Ya~HlerWL~y~~~~QlliiDg~qLr~~Pa~vm~~~qkfLgv~p 791 (873)
T KOG3703|consen 729 SSAPSALKALQNRCLVPGWYATHLERWLTYFPAQQLLIIDGQQLRTNPATVMNELQKFLGVTP 791 (873)
T ss_pred CCCcHHHHHHHHhccCcchHHHHHHHHHHhCCcccEEEEccHHhccCcHHHHHHHHHHhCCCC
Confidence 1112223322 344556899999987899999999988887 8899999999954
No 9
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.065 Score=51.14 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=64.6
Q ss_pred cCeEEEEEeccchhHHHHHHHHhhccchhhhccCcccccccChHHHhhhhcccccCChhhhHHHHHHHHHHHHHHHHHhC
Q 035616 136 KGVSAIFLIRRNLLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTINATLLIPELKQIEQTTAKAIEYFK 215 (289)
Q Consensus 136 ~gvkvI~L~RRN~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~~la~~k~~~d~~~Li~~l~~~e~~~~~~l~~~~ 215 (289)
+..|.|++. ||++.|+||-....+.+..- +- +...-.+...++ -.+|++----.+--+..-..+|+++|.
T Consensus 189 pd~KLivvv-R~PvtRaiSDyTQt~sk~~~-~P-~fe~lafkn~~~-------g~id~~w~ai~iglY~~Hle~WL~yFp 258 (360)
T KOG3704|consen 189 PDTKLIVVV-RDPVTRAISDYTQTLSKKPD-IP-TFEVLAFKNRTA-------GLIDTSWKAIRIGLYAVHLENWLRYFP 258 (360)
T ss_pred CCceEEEEE-cCchhhhHHHHHHHHhcCCC-CC-ceeeeeeecCcc-------ceeecchhhhhhhHHHHHHHHHHHhCc
Confidence 788888865 69999999987643321110 00 000000000011 134444333333445667788999999
Q ss_pred CCceEEEEeecccCCHH-HHHHHHHHhcCCc
Q 035616 216 STRHIVFYYEDLITNRA-TLKEVQEFLRLAY 245 (289)
Q Consensus 216 ~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~ 245 (289)
-...+.|.=|.|+.||. .+.+|+||||+..
T Consensus 259 L~q~lfVsGerli~dPa~E~~rVqdFLgLkr 289 (360)
T KOG3704|consen 259 LRQILFVSGERLISDPAGELGRVQDFLGLKR 289 (360)
T ss_pred hhheEEecCceeecCcHHHHHHHHHHhcccc
Confidence 87789999999999998 8999999999865
No 10
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.73 E-value=3.8 Score=39.94 Aligned_cols=51 Identities=12% Similarity=-0.065 Sum_probs=32.9
Q ss_pred ccceeeEEEeccCcccccchhHHHHhhccCeEEEEEeccchhHHHHHHHHhhc
Q 035616 108 CSAAVGFKWMMNQGLMEHHNDIAEYFKKKGVSAIFLIRRNLLRRMISILANSY 160 (289)
Q Consensus 108 ~~~avGFK~m~nQg~~~h~~~~~e~l~~~gvkvI~L~RRN~Lr~~VS~~~~~~ 160 (289)
+..+.|.|=---=-++.-|..++|.++.--+.+|. +||+|.-+-|...+..
T Consensus 106 ~kpl~gIKDPRm~r~~p~w~~~~d~~~~~~~~iv~--~r~plsVA~sl~rrD~ 156 (402)
T COG3551 106 GKPLWGIKDPRMLRTFPLWKGPMDRVADITYIIVH--RRIPLSVASSLRRRDM 156 (402)
T ss_pred CCceeeecCcchhcccHHhhhHHHHhccceeEEee--cCCcHHHHHHHHhhhh
Confidence 45677777311112456677777777765555555 8999998888776433
No 11
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.86 E-value=2.6e+02 Score=28.02 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=69.8
Q ss_pred hhHHHHhhccCeEEEEEeccc------hhHHHHHHHHhhccchhhhccCcccccccChHHHhhhhcccccCChhhhHHHH
Q 035616 127 NDIAEYFKKKGVSAIFLIRRN------LLRRMISILANSYDRNAKLLNGTHKSHVHSPAEAKILAKYKPTINATLLIPEL 200 (289)
Q Consensus 127 ~~~~e~l~~~gvkvI~L~RRN------~Lr~~VS~~~~~~d~~ak~l~gthkshv~s~~eA~~la~~k~~~d~~~Li~~l 200 (289)
..+.+++.+.|+.|+++---+ .=++.++.... ..+....+.|+.. ..++..++..-+
T Consensus 263 a~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~------~~~~~~~~~~vi~-----------~~~~~~e~~~iI 325 (426)
T PRK10017 263 AGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLR------QHVSDPARYHVVM-----------DELNDLEMGKIL 325 (426)
T ss_pred HHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHH------HhcccccceeEec-----------CCCChHHHHHHH
Confidence 355666766799999876432 23444444442 1121111111110 123333444444
Q ss_pred HHH-----HHHHHHHHHHhCCCceEEEEeecccCCHHHHHHHHHHhcCCccccCcc--ccccccCChhhhccCHHHHHHH
Q 035616 201 KQI-----EQTTAKAIEYFKSTRHIVFYYEDLITNRATLKEVQEFLRLAYRELTSR--QVKIHSGPLSKQVENWDDVQKA 273 (289)
Q Consensus 201 ~~~-----e~~~~~~l~~~~~~~~l~v~YEDLv~d~~~l~~V~~FLgVp~~~L~s~--~~Ki~~~pL~~~V~N~dEv~~~ 273 (289)
.+. -+.++-.+.+..+++.+.|.|+ .++.++++-||.+.--.+.. ....-..-+....+|.+++++.
T Consensus 326 s~~dl~ig~RlHa~I~a~~~gvP~i~i~Y~------~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 326 GACELTVGTRLHSAIISMNFGTPAIAINYE------HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred hhCCEEEEecchHHHHHHHcCCCEEEeeeh------HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 333 3455566777788999999995 37888889999886422211 1111122366777888888887
Q ss_pred Hc
Q 035616 274 LK 275 (289)
Q Consensus 274 L~ 275 (289)
|.
T Consensus 400 l~ 401 (426)
T PRK10017 400 LA 401 (426)
T ss_pred HH
Confidence 64
No 12
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=31.56 E-value=1.3e+02 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhc
Q 035616 209 KAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLR 242 (289)
Q Consensus 209 ~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLg 242 (289)
.+|...+-.-.+.|.+||.+.|+. .+.+-++||.
T Consensus 7 ~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr 41 (55)
T PF07582_consen 7 SALREIGYDGWLSIEHEDALMDPEEGAREAAAFLR 41 (55)
T ss_dssp HHHHHTT--SEEEE---STTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHH
Confidence 345555655689999999999987 7888888886
No 13
>smart00303 GPS G-protein-coupled receptor proteolytic site domain. Present in latrophilin/CL-1, sea urchin REJ and polycystin.
Probab=29.36 E-value=27 Score=24.19 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=16.0
Q ss_pred ccCCCccCCCCceEEEEec
Q 035616 45 FNREECACNPVRYFAILSM 63 (289)
Q Consensus 45 ~~~~~~~~~p~~~FvIls~ 63 (289)
-+...|.||....|+|+.-
T Consensus 27 ~~~~~C~CnHlT~Favl~~ 45 (49)
T smart00303 27 STHTTCSCNHLTTFAVLMD 45 (49)
T ss_pred CCEEEEEEEccceEEEeEE
Confidence 3667899999999999863
No 14
>PRK09767 hypothetical protein; Provisional
Probab=28.64 E-value=83 Score=26.12 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=37.3
Q ss_pred ccCChhhhHHHHHHHHHHHHHHHHHhCCCceEEEEeecccCCHH-HHHHHHHHhcCCc
Q 035616 189 PTINATLLIPELKQIEQTTAKAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFLRLAY 245 (289)
Q Consensus 189 ~~~d~~~Li~~l~~~e~~~~~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FLgVp~ 245 (289)
|.+|...+-.. +..+..-...++..|= ..+.++.+|+..|++ ++..|.+.|+-..
T Consensus 59 IE~DG~~H~~~-~~~D~~R~~~L~~~G~-~VlRf~n~dV~~~~~~Vl~~I~~~l~~~~ 114 (117)
T PRK09767 59 VELDGGQHDLA-VAYDTRRTSWLESQGW-TVLRFWNNEIDCNEEAVLEIILQELNRRS 114 (117)
T ss_pred EEEeCcccchh-HHHHHHHHHHHHHCCC-EEEEEEHHHHHhCHHHHHHHHHHHHhccC
Confidence 44555544222 2344444556655444 899999999999998 7899999988643
No 15
>PF09686 Plasmid_RAQPRD: Plasmid protein of unknown function (Plasmid_RAQPRD); InterPro: IPR019110 This entry identifies a family of proteins, around 100 amino acids in length, that include a predicted signal sequence and a perfectly conserved motif, RAQPRD, towards the C terminus. They are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae pv. tomato str. DC3000. The function of these proteins is unknown.
Probab=28.61 E-value=1.2e+02 Score=23.75 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCC--ceEEEEeecccCCHHHH-HHHHHHhcCCcc
Q 035616 195 LLIPELKQIEQTTAKAIEYFKST--RHIVFYYEDLITNRATL-KEVQEFLRLAYR 246 (289)
Q Consensus 195 ~Li~~l~~~e~~~~~~l~~~~~~--~~l~v~YEDLv~d~~~l-~~V~~FLgVp~~ 246 (289)
.++..|..++....++...-.+. ..+++.|-.|..|...+ .+|.++|.-|..
T Consensus 15 ~~~rqLd~l~~~~~rA~~~a~~~~~~R~~FdY~rl~~Dl~~ir~GI~~YL~psRA 69 (81)
T PF09686_consen 15 LAIRQLDQLEALLERAEAQANQSPSSRYYFDYPRLRADLERIRAGIQDYLNPSRA 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCceeecHHHHHHHHHHHHHHHHHHcCcccc
Confidence 36778888888887776665532 47999999999999977 899999986653
No 16
>PLN00154 histone H2A; Provisional
Probab=27.10 E-value=25 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCcccc------CccccccccCChhhhccCHHHHHHHHcCCCC
Q 035616 233 TLKEVQEFLRLAYREL------TSRQVKIHSGPLSKQVENWDDVQKALKGTSY 279 (289)
Q Consensus 233 ~l~~V~~FLgVp~~~L------~s~~~Ki~~~pL~~~V~N~dEv~~~L~gT~y 279 (289)
+|..|+|+|-...-+| +.+.++|.|+.+.-.|.|-+|+.+.|++|-.
T Consensus 65 YLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~~TIa 117 (136)
T PLN00154 65 YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 117 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHHhcCCcc
Confidence 6677777766544333 3356789999999999999999999998753
No 17
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.73 E-value=41 Score=31.66 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=39.6
Q ss_pred CceEEEEecCCCcccH--HHhhcc-----Cc----ccccccchhHHHHHHHhcccchhhcccccccceeeEEEeccCccc
Q 035616 55 VRYFAILSMQRSGSGW--FETLLN-----IK----HRRINISSIVSTMDRVYNLDWFTSASKNECSAAVGFKWMMNQGLM 123 (289)
Q Consensus 55 ~~~FvIls~~RSGS~~--LetlLN-----i~----~rr~~~ss~~~~ld~i~~l~~~~~a~~~~~~~avGFK~m~nQg~~ 123 (289)
.++||..|.||+|-|+ |+-+|- .| +|-++- ++..|.+.|+|-- .--..-.|.+ +.||+
T Consensus 112 LDFyVheS~QR~G~G~~lfdyMl~kE~vephQ~a~DrPS~k--Ll~Fm~khYgl~~-------tVwQ~nnfvl--fegfF 180 (264)
T KOG4601|consen 112 LDFYVHESEQRSGNGFKLFDYMLKKENVEPHQCAFDRPSAK--LLQFMEKHYGLKD-------TVWQSNNFVL--FEGFF 180 (264)
T ss_pred EEEEeehhhhhcCchHHHHHHHHHhcCCCchheeccChHHH--HHHHHHHhcCccc-------cccccCcEEE--Eehhh
Confidence 6899999999999985 566665 11 333333 8899999997521 1112345555 67777
Q ss_pred cc
Q 035616 124 EH 125 (289)
Q Consensus 124 ~h 125 (289)
.+
T Consensus 181 ~~ 182 (264)
T KOG4601|consen 181 IG 182 (264)
T ss_pred cc
Confidence 65
No 18
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=25.41 E-value=84 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred HHHHHHhCCCceEEEEeecccCCHH-HHHHHHHHh
Q 035616 208 AKAIEYFKSTRHIVFYYEDLITNRA-TLKEVQEFL 241 (289)
Q Consensus 208 ~~~l~~~~~~~~l~v~YEDLv~d~~-~l~~V~~FL 241 (289)
.+.++..|- ..+.++++|+..+|+ ++..|.+.|
T Consensus 74 ~~~L~~~Gw-~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 74 DAWLEARGF-RVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred HHHHHHCCC-EEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 345555444 899999999999998 678887765
No 19
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=23.22 E-value=1.1e+02 Score=25.96 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=30.7
Q ss_pred CceEEEEecCCCcc--cHHHhhcc---Cc------ccccccchhHHHHHHHhcc
Q 035616 55 VRYFAILSMQRSGS--GWFETLLN---IK------HRRINISSIVSTMDRVYNL 97 (289)
Q Consensus 55 ~~~FvIls~~RSGS--~~LetlLN---i~------~rr~~~ss~~~~ld~i~~l 97 (289)
.|+||.=|.||.|= -+|+.+|. +. +|.+.. ++..|.|+|+|
T Consensus 50 LDFyVhes~QR~G~Gk~LF~~ML~~e~~~p~~~a~DrPS~K--ll~Fl~Khy~L 101 (120)
T PF05301_consen 50 LDFYVHESRQRRGYGKRLFDHMLQEENVSPHQLAIDRPSPK--LLSFLKKHYGL 101 (120)
T ss_pred eeEEEEeceeccCchHHHHHHHHHHcCCCcccceecCCcHH--HHHHHHHhcCC
Confidence 59999999999975 47888888 22 332222 78889999976
No 20
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=21.94 E-value=46 Score=34.16 Aligned_cols=19 Identities=42% Similarity=0.885 Sum_probs=17.5
Q ss_pred EEEEecCCCcccHHHhhcc
Q 035616 58 FAILSMQRSGSGWFETLLN 76 (289)
Q Consensus 58 FvIls~~RSGS~~LetlLN 76 (289)
-||+|-+|||+.||+.|.-
T Consensus 221 ~vvlA~Grsg~dw~~~l~~ 239 (486)
T COG2509 221 YVVLAPGRSGRDWFEMLHK 239 (486)
T ss_pred EEEEccCcchHHHHHHHHH
Confidence 4899999999999999976
No 21
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=21.84 E-value=3.6e+02 Score=25.29 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=46.5
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHhCCCceEEEEeec-------------------ccCCHHHHHHHHHHhcCCccccCc
Q 035616 190 TINATLLIPELKQIEQTTAKAIEYFKSTRHIVFYYED-------------------LITNRATLKEVQEFLRLAYRELTS 250 (289)
Q Consensus 190 ~~d~~~Li~~l~~~e~~~~~~l~~~~~~~~l~v~YED-------------------Lv~d~~~l~~V~~FLgVp~~~L~s 250 (289)
..+.+++..+++.+...+....+.+...+.-.+-|++ ++.|++..+.+.+|++.-...+..
T Consensus 53 ~a~~e~L~~El~~L~~~w~~I~~~~~~~~~P~LLy~~~~~~~~~lrd~~~~~~~~Iivd~~~~~~~~~~~~~~~~~~~~~ 132 (271)
T PF10150_consen 53 GASEEELEKELEELREKWEEIQKKAKSRKAPSLLYREPDLYERVLRDYLDEDVDEIIVDDKEIYEEIKEYLKEFSPDLKD 132 (271)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHCTS-STEEEE-STSHHHHHHHHH--TTEEEEEES-HHHHHHHHHHHHTT-GGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCChhhHHHhhcCcCCCCEEEECCcHHHHHHHHHHHHhCccccc
Confidence 3455778888888888888888887776666666765 223344667777777654443333
Q ss_pred ccccc-ccCChhhhccCHHHHHHHHc
Q 035616 251 RQVKI-HSGPLSKQVENWDDVQKALK 275 (289)
Q Consensus 251 ~~~Ki-~~~pL~~~V~N~dEv~~~L~ 275 (289)
+...- ...|+.+.-.=.+++.++++
T Consensus 133 ~i~~~~~~~~lf~~~~i~~~i~~~~~ 158 (271)
T PF10150_consen 133 KIELYKDEEPLFELYGIEEAIEKALS 158 (271)
T ss_dssp TEEE--SSS-HHHHTT-HHHHHHTTS
T ss_pred eEEEecCCCChHHhCCHHHHHHHHhC
Confidence 22211 12455554333344555543
No 22
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=21.61 E-value=34 Score=36.50 Aligned_cols=46 Identities=26% Similarity=0.542 Sum_probs=32.2
Q ss_pred EEEecCCCcccHHHhhcc--------Cc--------ccccccchhHHHHHHHhcccchhhcccc
Q 035616 59 AILSMQRSGSGWFETLLN--------IK--------HRRINISSIVSTMDRVYNLDWFTSASKN 106 (289)
Q Consensus 59 vIls~~RSGS~~LetlLN--------i~--------~rr~~~ss~~~~ld~i~~l~~~~~a~~~ 106 (289)
+-+.-+++||||++.|+. || ..++.+ -.-.+++|-+|.|+-+-++.
T Consensus 77 ~~~~f~~~g~G~~~GLfgC~rPV~~~iGk~~s~e~k~qq~e~--WeiPFe~IsELeWlGSGaQG 138 (904)
T KOG4721|consen 77 VRLQFQASGSGFLEGLFGCLRPVWTMIGKAYSTEHKQQQEEL--WEIPFEEISELEWLGSGAQG 138 (904)
T ss_pred hhhcCccCchHHHHHHHhhhHHHHHHhccceeeehhhhhhhh--ccCCHHHhhhhhhhccCccc
Confidence 456779999999999999 33 122222 22346899999999885553
No 23
>PLN00157 histone H2A; Provisional
Probab=21.49 E-value=35 Score=29.25 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCcccc------CccccccccCChhhhccCHHHHHHHHcCCCCc
Q 035616 232 ATLKEVQEFLRLAYREL------TSRQVKIHSGPLSKQVENWDDVQKALKGTSYE 280 (289)
Q Consensus 232 ~~l~~V~~FLgVp~~~L------~s~~~Ki~~~pL~~~V~N~dEv~~~L~gT~ye 280 (289)
-+|..|+|+|-....+| +.+..+|.|+.+.-.|.|-+|+.+.|+|...+
T Consensus 51 VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vtIa 105 (132)
T PLN00157 51 VYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIA 105 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHcCceec
Confidence 35677777766543322 33456999999999999999999999985443
No 24
>PF01825 GPS: Latrophilin/CL-1-like GPS domain; InterPro: IPR000203 This domain has been termed the GPS domain (for GPCR proteolytic site), because it contains a cleavage site in O97830 from SWISSPROT latrophilin []. However this region in latrophilin is found in many otherwise unrelated cell surface receptors []. There is no evidence currently that this domain provides a cleavage site in any of the other receptors. However the peptide bond that is cleaved in latrophilin is between Leu and Thr residues that are conserved in some of the other receptors []. GPS domains are about 50 residues long and contain either 2 or 4 cysteine residues that are likely to form disulphide bridges. Based on conservation of these cysteines the following pairing can be predicted. +-----------------+ | | +-----------------+---------------+ | | | | | XXXCXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXCXCXXLTXXXXXXX ^ cleavage site ; GO: 0007218 neuropeptide signaling pathway, 0016020 membrane; PDB: 4DLQ_B 4DLO_B.
Probab=21.29 E-value=51 Score=22.25 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=13.5
Q ss_pred cCCCccCCCCceEEEEe
Q 035616 46 NREECACNPVRYFAILS 62 (289)
Q Consensus 46 ~~~~~~~~p~~~FvIls 62 (289)
+.-+|.|+-...|+||.
T Consensus 28 ~~~~C~C~HlT~Favlm 44 (44)
T PF01825_consen 28 SHVTCSCNHLTSFAVLM 44 (44)
T ss_dssp TEEEEEECC-SEEEEEE
T ss_pred CCEEEEeeCCCcEeEeC
Confidence 34789999999999983
No 25
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=21.11 E-value=51 Score=17.52 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=9.3
Q ss_pred CCcccCCCccCC
Q 035616 42 PVTFNREECACN 53 (289)
Q Consensus 42 ~~~~~~~~~~~~ 53 (289)
|+.|+.+.|.|.
T Consensus 1 ~q~wn~~tC~C~ 12 (14)
T PF03128_consen 1 PQVWNDDTCQCE 12 (14)
T ss_pred CceecCCCcCcc
Confidence 677888888873
Done!