BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035617
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 54 EIGICASSVIIH-GYKCQEIDVTTKDGYILNLQRIPEGRAAGGGQIKRPPVLIQHGVLVD 112
E+ + S +I + GY +E +V T+DGYIL + RIP GR +RP +QHG+L
Sbjct: 11 EVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLAS 70
Query: 113 GLTWLLNPPEQNLPLILADHGFDVWIANTRGTRFSRRHTSLDPSQMEFWNWSWDELVAYD 172
W+ N P +L ILAD G+DVW+ N+RG ++RR+ P +EFW +S+DE+ YD
Sbjct: 71 ATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYD 130
Query: 173 LPAVFDHVYEQTGQ-KIHYVGHSLGTLIALASFSEGLQVDK-LKSAALLSPIAYLSYMRT 230
LPA D + ++TGQ K+HYVGHS GT I +FS ++ K +K+ L+P+A + Y T
Sbjct: 131 LPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTET 190
Query: 231 ALG-VIAAKSFVGEITTLLGLAEFNPKGKPVADFLKSLCTNPVVN--CYDLLTSLTGRNC 287
+ ++ SF+ ++ + G F P +C+ V+ C + L + G +
Sbjct: 191 LINKLMLVPSFLFKL--IFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDT 248
Query: 288 C-LNSSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYN 346
LN S +D++L + P TS +N++H +Q V+ G F++G P N+MHY + PP YN
Sbjct: 249 MNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYN 308
Query: 347 ISNIPHDLPLFVSYGGNDALADLTQYLLYLCKL 379
++++ +P+ V GGND LAD L L KL
Sbjct: 309 LTDM--HVPIAVWNGGNDLLADPHDVDLLLSKL 339
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 187/334 (55%), Gaps = 13/334 (3%)
Query: 54 EIGICASSVIIH-GYKCQEIDVTTKDGYILNLQRIPEGRAAGGGQIKRPPVLIQHGVLVD 112
E+ + S +I + GY +E +V T+DGYIL + RIP G+ G +RP V +QHG+L
Sbjct: 3 EVTMNISQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLAS 62
Query: 113 GLTWLLNPPEQNLPLILADHGFDVWIANTRGTRFSRRHTSLDPSQMEFWNWSWDELVAYD 172
W+ N P +L ILAD G+DVW+ N+RG ++RR+ P +EFW +S+DE+ YD
Sbjct: 63 ATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYD 122
Query: 173 LPAVFDHVYEQTGQK-IHYVGHSLGTLIALASFSEGLQVDK-LKSAALLSPIAYLSYMRT 230
LPA D + ++TGQK +HYVGHS GT I +FS + K +K+ L+P+A + Y ++
Sbjct: 123 LPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKYTKS 182
Query: 231 ALGVIAAKSFVGE--ITTLLGLAEFNPKGKPVADFLKSLCTNPVVN--CYDLLTSLTGRN 286
+I FV + + G F P +C+ ++N C + L + G +
Sbjct: 183 ---LINKLRFVPQSLFKFIFGDKIFYPHNFFDQFLATEVCSREMLNLLCSNALFIICGFD 239
Query: 287 C-CLNSSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIY 345
N+S +D++L + P TS +NM H Q V+ G +++G P N MHY + +PP Y
Sbjct: 240 SKNFNTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQSQPPYY 299
Query: 346 NISNIPHDLPLFVSYGGNDALADLTQYLLYLCKL 379
N++ + ++P+ V GG D LAD L L KL
Sbjct: 300 NVTAM--NVPIAVWNGGKDLLADPQDVGLLLPKL 331
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 21/109 (19%)
Query: 96 GQIKRPPVLIQHGVLVDGLTWLLNPPEQNLPLILADHGFDVWIANTRGT-RFSRRHTSLD 154
G + P VL HG+L GL W Q + L LA G+ V + G R S
Sbjct: 22 GSPEHPVVLCIHGILEQGLAW------QEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTS 75
Query: 155 PSQMEFWNWSWDELVAYDLPAVFDHVYEQ-TGQKIHYVGHSLGTLIALA 202
S + F A D V ++ Q + VGHS+G ++A A
Sbjct: 76 YSSLTFL-------------AQIDRVIQELPDQPLLLVGHSMGAMLATA 111
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 84 LQRIPEGRAAGGGQIKRPPVLIQHGVL-----VDGLTWLLNPPEQNLPL----ILADHGF 134
L RI ++AG I P V HG L + GL LL+ P PL + D
Sbjct: 82 LARIHALKSAGDFDIFFPVV---HGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKAL 138
Query: 135 DVWIANTRGTRFSRRHTSLDPSQMEFWNWSWDELVA 170
+ G R + ++ +DP NWSWD++VA
Sbjct: 139 TKELLTVNGIR-NTKYIVVDPESAN--NWSWDKIVA 171
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 291 SSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNIS 348
+S L++ +E + + +VH TV DG+I +Y P N +P +Y +S
Sbjct: 59 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN-------KPTVYGVS 109
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 291 SSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNIS 348
+S L++ +E + + +VH TV DG+I +Y P N +P +Y +S
Sbjct: 70 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN-------KPTVYGVS 120
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 291 SSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNIS 348
+S L++ +E + + +VH TV DG+I +Y P N +P IY +S
Sbjct: 159 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN-------KPTIYGVS 209
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 39/178 (21%)
Query: 68 KCQEIDVTTKDGYILNLQRIPEGRAAGGGQIKRPPVLIQHGVLVDGLTWLLNPPEQNLPL 127
+C+ ++T+ G + G PP+++ HG L W N
Sbjct: 44 RCKSFYISTRFG---------QTHVIASGPEDAPPLVLLHGALFSSTXWYPN-------- 86
Query: 128 ILAD--HGFDVWIANTRGTRFSRRHTSLDPSQMEFWNWSWDELVAYDLPAVFDHVYEQTG 185
+AD + + + G + ++ ++ ++ NW D VFD++
Sbjct: 87 -IADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLD---------VFDNL---GI 133
Query: 186 QKIHYVGHSLGTLIALASFSEGLQVDKLKSAALLSPIA-----YLSYMRTALGVIAAK 238
+K H +G SLG L +++KSAA+LSP + + + ALG+ A+
Sbjct: 134 EKSHXIGLSLGGLHTXNFLLR--XPERVKSAAILSPAETFLPFHHDFYKYALGLTASN 189
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 291 SSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNIS 348
+S L++ +E + + +VH TV DG+I +Y P N +P +Y +S
Sbjct: 198 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN-------KPTVYGVS 248
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 291 SSTVDLFLRNEPQSTSTKNMVHLAQTVRDGVIAKFNYGRPDYNLMHYGEFRPPIYNIS 348
+S L++ +E + + +VH TV DG+I +Y P N +P +Y +S
Sbjct: 156 ASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN-------KPTVYGVS 206
>pdb|1PV1|A Chain A, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|B Chain B, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|C Chain C, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|D Chain D, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
Length = 299
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 167 ELVAYDLPAVFDHVYEQTGQ-------KIHYVGHSLGTLIALASFSEGLQVDKLKSAALL 219
+ + +LP D + + G + GHS+G A+ + +G + KS +
Sbjct: 127 DYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAF 186
Query: 220 SPIAYLSYMRTALGVIAAKSFVGE 243
+PI S G A K ++GE
Sbjct: 187 APIVNPS--NVPWGQKAFKGYLGE 208
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 127 LILADHGFDVWIANTRGTRFSRRHTSLDPSQMEFWNWS--WDELVAYDLPAVFDHVYEQT 184
L+ +G +VW+AN R T ++ ++ ++N S +D+L D FD + + T
Sbjct: 198 LLFRTYGLEVWMANRR-EPTEVEQTVIEETKTNYYNSSNGYDKL--KDSVGKFDVIIDAT 254
Query: 185 GQKIHYVGHSL 195
G ++ +G+ +
Sbjct: 255 GADVNILGNVI 265
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 127 LILADHGFDVWIANTRGTRFSRRHTSLDPSQMEFWNWS--WDELVAYDLPAVFDHVYEQT 184
L+ +G +VW+AN R T ++ ++ ++N S +D+L D FD + + T
Sbjct: 198 LLFRTYGLEVWMANRR-EPTEVEQTVIEETKTNYYNSSNGYDKL--KDSVGKFDVIIDAT 254
Query: 185 GQKIHYVGHSL 195
G ++ +G+ +
Sbjct: 255 GADVNILGNVI 265
>pdb|3C6B|A Chain A, Reaction Product Of Paraoxon And S-Formylglutathione
Hydrolase W197i Mutant
pdb|4FLM|A Chain A, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
pdb|4FLM|B Chain B, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
Length = 299
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 167 ELVAYDLPAVFDHVYEQTGQ-------KIHYVGHSLGTLIALASFSEGLQVDKLKSAALL 219
+ + +LP D + + G + GH +G A+ + +G + KS +
Sbjct: 127 DYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHXMGGYGAICGYLKGYSGKRYKSCSAF 186
Query: 220 SPIAYLSYMRTALGVIAAKSFVGE 243
+PI S +G A K ++GE
Sbjct: 187 APIVNPS--NVPIGQKAFKGYLGE 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,215,688
Number of Sequences: 62578
Number of extensions: 519237
Number of successful extensions: 1088
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 20
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)