BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035618
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI 60
+NN G IP I K + LH + ++ IP+ L ++ +L L +N +G LPP I
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 61 SSFIKLEDIGLSINRFISSIPES 83
SS L I NR +IP+S
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDS 168
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSL-TKLILKWNQFTGRLPPEI 60
N +G +P I +L N + IP+ G + L T + + N+ TG++PP
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 61 SSF 63
++
Sbjct: 195 ANL 197
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI 64
+G IP EIG +L +L N + IP+++G L L L L N+ GR+P +S+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 65 KLEDIGLSINRFISSIPE 82
L +I LS N IPE
Sbjct: 705 MLTEIDLSNNNLSGPIPE 722
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
N TG IP + S L + L FN+L IP+ LG L+ L L L N G +P E+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
LE + L N IP N+ E+PK + ++ L+
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
N+ TG+IP + ++L+ L N L EIP +G+L +L L L N F+G +P E+
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 62 SFIKLEDIGLSINRFISSIPES 83
L + L+ N F +IP +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAA 557
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 2 NNSTGDIPCE-IGKSSHLHAFDLLFNHLFVEIPNDLGKL--------------------- 39
NN +G++P + + K L DL FN E+P L L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 40 ------NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESXXXXXXXXXX 93
N+L +L L+ N FTG++PP +S+ +L + LS N +IP S
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 94 XXXXNQFFQELPKELEKVVQL 114
N E+P+EL V L
Sbjct: 448 KLWLNMLEGEIPQELMYVKTL 468
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK 65
G+IP E+ L L FN L EIP+ L +L + L N+ TG +P I
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 66 LEDIGLSINRFISSIPE 82
L + LS N F +IP
Sbjct: 516 LAILKLSNNSFSGNIPA 532
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 21 FDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80
D+ +N L IP ++G + L L L N +G +P E+ L + LS N+ I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 81 PES 83
P++
Sbjct: 697 PQA 699
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
NN + IP +G S L D+ N L + + L L + NQF G +PP
Sbjct: 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266
Query: 62 SFIKLEDIGLSINRFISSIPE 82
L+ + L+ N+F IP+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPD 287
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 18 LHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76
L L N EIP+ L G ++LT L L N F G +PP S LE + LS N F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 77 ISSIP-ESXXXXXXXXXXXXXXNQFFQELPKELEKV 111
+P ++ N+F ELP+ L +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 41 SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQF 100
S+ L + +N +G +P EI S L + L N SIP+ N+
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 101 FQELPKELEKVVQLSE 116
+P+ + + L+E
Sbjct: 693 DGRIPQAMSALTMLTE 708
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI 64
+G IP EIG +L +L N + IP+++G L L L L N+ GR+P +S+
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 65 KLEDIGLSINRFISSIPE 82
L +I LS N IPE
Sbjct: 702 MLTEIDLSNNNLSGPIPE 719
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
N TG IP + S L + L FN+L IP+ LG L+ L L L N G +P E+
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 62 SFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQFFQELPKELEKVVQLS 115
LE + L N IP N+ E+PK + ++ L+
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
N+ TG+IP + ++L+ L N L EIP +G+L +L L L N F+G +P E+
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 62 SFIKLEDIGLSINRFISSIPES 83
L + L+ N F +IP +
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAA 554
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 2 NNSTGDIPCE-IGKSSHLHAFDLLFNHLFVEIPNDLGKL--------------------- 39
NN +G++P + + K L DL FN E+P L L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 40 ------NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESXXXXXXXXXX 93
N+L +L L+ N FTG++PP +S+ +L + LS N +IP S
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 94 XXXXNQFFQELPKELEKVVQL 114
N E+P+EL V L
Sbjct: 445 KLWLNMLEGEIPQELMYVKTL 465
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIK 65
G+IP E+ L L FN L EIP+ L +L + L N+ TG +P I
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 66 LEDIGLSINRFISSIPE 82
L + LS N F +IP
Sbjct: 513 LAILKLSNNSFSGNIPA 529
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 21 FDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80
D+ +N L IP ++G + L L L N +G +P E+ L + LS N+ I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 81 PES 83
P++
Sbjct: 694 PQA 696
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEIS 61
NN + IP +G S L D+ N L + + L L + NQF G +PP
Sbjct: 207 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 263
Query: 62 SFIKLEDIGLSINRFISSIPE 82
L+ + L+ N+F IP+
Sbjct: 264 PLKSLQYLSLAENKFTGEIPD 284
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 18 LHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76
L L N EIP+ L G ++LT L L N F G +PP S LE + LS N F
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 77 ISSIP-ESXXXXXXXXXXXXXXNQFFQELPKELEKV 111
+P ++ N+F ELP+ L +
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 41 SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESXXXXXXXXXXXXXXNQF 100
S+ L + +N +G +P EI S L + L N SIP+ N+
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 101 FQELPKELEKVVQLSE 116
+P+ + + L+E
Sbjct: 690 DGRIPQAMSALTMLTE 705
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNS------LTKLILKWNQFTG 54
+ N+ ++ IGK HA N L E+P DLG+L L + IL + G
Sbjct: 398 LENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEG 457
Query: 55 RLPPEIS 61
+LPP ++
Sbjct: 458 QLPPIVT 464
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNS------LTKLILKWNQFTG 54
+ N+ ++ IGK HA N L E+P DLG+L L + IL + G
Sbjct: 398 LENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEG 457
Query: 55 RLPPEIS 61
+LPP ++
Sbjct: 458 QLPPIVT 464
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 11 EIGKSSHLHAFDLLFN-HLFVEIPND--LGKLNSLTKLILKWNQFTGRLPPEISSFIKLE 67
EI + LH +LL N + I +D G+L L KL LK NQ TG P ++
Sbjct: 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 68 DIGLSINRF 76
++ L N+
Sbjct: 82 ELQLGENKI 90
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
S L DL HL E+P+ L L++L KL+L N+F S+F L + + N
Sbjct: 278 SGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 29 FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72
F+++PN +L+KL+ K+ + T +L P ++SF+ ++ +S
Sbjct: 176 FLQLPN------TLSKLLEKFGEITNKLGPMLNSFMGAGNVDIS 213
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 29 FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72
F+++PN +L+KL+ K+ + T +L P ++SF+ ++ +S
Sbjct: 176 FLQLPN------TLSKLLEKFGEITNKLGPMLNSFMGAGNVDIS 213
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 29 FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72
F+++PN +L+KL+ K+ + T +L P ++SF+ ++ +S
Sbjct: 176 FLQLPN------TLSKLLEKFGEITNKLGPMLNSFMGAGNVDIS 213
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 29 FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72
F+++PN +L+KL+ K+ + T +L P ++SF+ ++ +S
Sbjct: 176 FLQLPN------TLSKLLEKFGEITNKLGPMLNSFMGAGNVDIS 213
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 29 FVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72
F+++PN +L+KL+ K+ + T +L P ++SF+ ++ +S
Sbjct: 176 FLQLPN------TLSKLLEKFGEITNKLGPMLNSFMGAGNVDIS 213
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74
+ + DL HL +P+ + +NSL KL+L N F +SF L D+ + N
Sbjct: 277 TRVQELDLTAAHL-NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,106,428
Number of Sequences: 62578
Number of extensions: 105281
Number of successful extensions: 200
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 36
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)