Query 035618
Match_columns 116
No_of_seqs 117 out of 2897
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 04:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 5E-17 1.1E-21 115.7 7.7 114 2-115 150-263 (968)
2 PLN00113 leucine-rich repeat r 99.7 2E-16 4.4E-21 112.6 8.3 113 2-114 174-286 (968)
3 PLN03150 hypothetical protein; 99.6 1.6E-14 3.5E-19 99.0 7.5 95 17-111 419-513 (623)
4 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.5E-21 91.2 -2.3 105 5-112 45-150 (264)
5 PLN03150 hypothetical protein; 99.5 9.6E-14 2.1E-18 95.3 7.7 104 2-105 428-532 (623)
6 KOG0617 Ras suppressor protein 99.4 4.8E-15 1E-19 86.0 -2.0 111 2-115 65-176 (264)
7 KOG0472 Leucine-rich repeat pr 99.3 2E-13 4.3E-18 88.0 0.6 98 2-101 421-541 (565)
8 KOG4194 Membrane glycoprotein 99.3 1.3E-12 2.8E-17 87.8 1.3 99 2-100 255-353 (873)
9 KOG4194 Membrane glycoprotein 99.2 7.8E-13 1.7E-17 88.8 -0.8 106 8-115 309-419 (873)
10 KOG0444 Cytoskeletal regulator 99.2 7.8E-13 1.7E-17 89.9 -1.3 107 6-115 212-319 (1255)
11 KOG0472 Leucine-rich repeat pr 99.2 3.8E-12 8.2E-17 82.3 1.3 75 1-77 443-541 (565)
12 KOG0444 Cytoskeletal regulator 99.1 1.3E-11 2.8E-16 84.1 1.1 97 2-101 88-186 (1255)
13 PF13855 LRR_8: Leucine rich r 99.1 5.7E-11 1.2E-15 58.3 3.0 58 41-99 2-60 (61)
14 PF13855 LRR_8: Leucine rich r 99.1 1.2E-10 2.5E-15 57.2 3.0 61 16-76 1-61 (61)
15 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-09 2.9E-14 64.0 6.3 101 11-115 36-143 (175)
16 KOG0618 Serine/threonine phosp 99.0 8.5E-11 1.8E-15 82.3 0.4 97 1-100 368-464 (1081)
17 PLN03210 Resistant to P. syrin 98.9 7E-09 1.5E-13 76.0 6.8 105 5-114 791-895 (1153)
18 PF14580 LRR_9: Leucine-rich r 98.9 4E-09 8.6E-14 62.0 4.1 97 13-115 16-116 (175)
19 KOG0532 Leucine-rich repeat (L 98.8 1.3E-09 2.9E-14 73.3 1.1 104 2-110 152-255 (722)
20 PLN03210 Resistant to P. syrin 98.8 1.8E-08 4E-13 73.9 6.3 90 8-99 626-715 (1153)
21 KOG0618 Serine/threonine phosp 98.7 2.1E-09 4.5E-14 75.6 0.2 91 6-100 396-488 (1081)
22 KOG1259 Nischarin, modulator o 98.7 3.8E-09 8.2E-14 66.7 1.1 91 6-100 274-364 (490)
23 cd00116 LRR_RI Leucine-rich re 98.7 6.4E-09 1.4E-13 66.2 1.6 15 86-100 219-233 (319)
24 PRK15387 E3 ubiquitin-protein 98.7 4E-08 8.7E-13 69.2 5.5 87 17-112 383-469 (788)
25 KOG4237 Extracellular matrix p 98.7 8.4E-10 1.8E-14 71.4 -2.6 97 17-113 68-165 (498)
26 KOG4237 Extracellular matrix p 98.7 8.5E-09 1.8E-13 66.9 1.3 89 12-100 270-358 (498)
27 cd00116 LRR_RI Leucine-rich re 98.7 8.8E-09 1.9E-13 65.6 1.4 39 14-52 79-120 (319)
28 KOG4658 Apoptotic ATPase [Sign 98.6 4.1E-08 9E-13 70.1 4.1 87 12-99 567-653 (889)
29 KOG0532 Leucine-rich repeat (L 98.6 8.4E-09 1.8E-13 69.6 -0.1 107 5-116 110-238 (722)
30 KOG1259 Nischarin, modulator o 98.5 1.4E-08 3E-13 64.3 0.1 70 4-76 295-364 (490)
31 PF12799 LRR_4: Leucine Rich r 98.5 2.4E-07 5.3E-12 42.3 3.0 37 16-53 1-37 (44)
32 KOG4658 Apoptotic ATPase [Sign 98.5 1.8E-07 3.9E-12 67.0 3.7 98 16-115 545-645 (889)
33 COG4886 Leucine-rich repeat (L 98.4 1.4E-07 3.1E-12 62.0 2.8 89 15-107 115-204 (394)
34 PRK15370 E3 ubiquitin-protein 98.4 6.2E-07 1.3E-11 63.4 6.0 75 17-100 221-295 (754)
35 KOG4579 Leucine-rich repeat (L 98.4 4.8E-08 1E-12 55.2 0.1 89 13-105 50-139 (177)
36 COG4886 Leucine-rich repeat (L 98.4 2.6E-07 5.7E-12 60.7 3.0 107 3-113 126-233 (394)
37 PF12799 LRR_4: Leucine Rich r 98.4 5.2E-07 1.1E-11 41.2 3.0 35 65-100 2-36 (44)
38 PRK15370 E3 ubiquitin-protein 98.4 1.8E-06 3.8E-11 61.2 7.0 90 7-108 192-281 (754)
39 PRK15387 E3 ubiquitin-protein 98.4 7.5E-07 1.6E-11 63.1 4.8 46 65-115 403-448 (788)
40 KOG4579 Leucine-rich repeat (L 98.4 6.2E-08 1.4E-12 54.7 -0.4 94 16-113 27-124 (177)
41 KOG1859 Leucine-rich repeat pr 98.0 2.5E-07 5.4E-12 64.6 -2.7 91 6-102 177-268 (1096)
42 KOG0531 Protein phosphatase 1, 97.9 3.2E-06 6.8E-11 56.2 0.9 87 11-102 90-176 (414)
43 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 47.5 3.2 85 12-97 60-149 (233)
44 KOG1859 Leucine-rich repeat pr 97.7 3E-06 6.5E-11 59.4 -2.3 94 15-114 163-256 (1096)
45 KOG0531 Protein phosphatase 1, 97.6 1.6E-05 3.5E-10 52.9 0.0 87 14-105 70-156 (414)
46 KOG3207 Beta-tubulin folding c 97.6 1.3E-05 2.9E-10 53.0 -0.4 87 12-98 142-232 (505)
47 PF00560 LRR_1: Leucine Rich R 97.4 5.3E-05 1.2E-09 29.2 0.8 21 89-110 1-21 (22)
48 KOG2123 Uncharacterized conser 97.4 9.6E-06 2.1E-10 51.1 -2.2 78 14-94 39-123 (388)
49 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3E-09 45.2 2.6 86 12-100 39-128 (260)
50 KOG2739 Leucine-rich acidic nu 97.4 0.00016 3.5E-09 44.9 2.5 85 11-97 60-152 (260)
51 KOG3207 Beta-tubulin folding c 97.4 3.9E-05 8.6E-10 50.9 -0.2 88 13-100 169-258 (505)
52 KOG1909 Ran GTPase-activating 97.3 5.5E-05 1.2E-09 48.8 0.2 91 10-100 207-310 (382)
53 KOG1644 U2-associated snRNP A' 97.3 0.00062 1.4E-08 41.2 4.5 83 16-101 42-126 (233)
54 KOG3665 ZYG-1-like serine/thre 97.2 0.0004 8.8E-09 49.2 3.1 92 12-106 169-268 (699)
55 KOG3665 ZYG-1-like serine/thre 96.8 0.00074 1.6E-08 48.0 1.8 59 39-99 172-231 (699)
56 KOG2982 Uncharacterized conser 96.6 0.00063 1.4E-08 43.6 0.5 86 15-100 70-158 (418)
57 PF13306 LRR_5: Leucine rich r 96.6 0.0075 1.6E-07 33.4 4.8 98 12-114 31-128 (129)
58 PF13504 LRR_7: Leucine rich r 96.6 0.0016 3.4E-08 23.3 1.3 16 89-105 2-17 (17)
59 PRK15386 type III secretion pr 96.4 0.0072 1.6E-07 40.6 4.4 88 12-111 48-137 (426)
60 KOG2123 Uncharacterized conser 96.3 0.00037 8E-09 44.2 -1.7 86 15-105 18-105 (388)
61 COG5238 RNA1 Ran GTPase-activa 96.3 0.0044 9.5E-08 39.5 2.7 90 15-105 29-136 (388)
62 KOG1909 Ran GTPase-activating 96.2 0.0063 1.4E-07 39.7 3.2 87 14-100 155-253 (382)
63 KOG0473 Leucine-rich repeat pr 96.0 8.5E-05 1.8E-09 45.9 -5.5 90 11-103 37-126 (326)
64 PF13516 LRR_6: Leucine Rich r 96.0 0.0045 9.9E-08 24.0 1.1 21 88-108 2-22 (24)
65 COG5238 RNA1 Ran GTPase-activa 95.8 0.029 6.3E-07 35.9 4.5 42 12-53 88-133 (388)
66 PF13306 LRR_5: Leucine rich r 95.4 0.026 5.7E-07 31.2 3.2 84 11-98 7-91 (129)
67 smart00369 LRR_TYP Leucine-ric 95.2 0.023 5.1E-07 22.4 2.0 19 88-107 2-20 (26)
68 smart00370 LRR Leucine-rich re 95.2 0.023 5.1E-07 22.4 2.0 19 88-107 2-20 (26)
69 KOG2982 Uncharacterized conser 94.3 0.024 5.2E-07 36.7 1.3 61 39-100 70-133 (418)
70 PRK15386 type III secretion pr 94.2 0.053 1.1E-06 36.6 2.7 69 36-111 48-117 (426)
71 KOG2120 SCF ubiquitin ligase, 92.3 0.012 2.6E-07 38.0 -2.3 87 17-103 186-275 (419)
72 KOG2120 SCF ubiquitin ligase, 91.0 0.15 3.2E-06 33.3 1.6 58 38-97 311-372 (419)
73 smart00364 LRR_BAC Leucine-ric 91.0 0.15 3.3E-06 20.3 1.1 18 88-106 2-19 (26)
74 KOG3864 Uncharacterized conser 89.4 0.1 2.2E-06 31.9 -0.1 81 17-97 102-185 (221)
75 KOG0473 Leucine-rich repeat pr 89.2 0.0083 1.8E-07 37.5 -4.8 76 37-115 39-114 (326)
76 smart00365 LRR_SD22 Leucine-ri 89.0 0.4 8.6E-06 19.1 1.5 13 88-100 2-14 (26)
77 smart00368 LRR_RI Leucine rich 88.3 0.42 9.2E-06 19.2 1.4 13 88-100 2-14 (28)
78 KOG1947 Leucine rich repeat pr 80.1 2.2 4.7E-05 28.9 2.8 88 13-100 211-307 (482)
79 smart00367 LRR_CC Leucine-rich 67.7 4.2 9.1E-05 15.7 1.2 13 87-99 1-13 (26)
80 TIGR00864 PCC polycystin catio 44.8 15 0.00033 31.4 1.7 31 46-77 1-32 (2740)
81 TIGR00864 PCC polycystin catio 39.0 25 0.00055 30.3 2.1 27 2-28 5-31 (2740)
82 KOG3763 mRNA export factor TAP 20.5 67 0.0015 23.3 1.4 63 15-78 217-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=5e-17 Score=115.71 Aligned_cols=114 Identities=37% Similarity=0.496 Sum_probs=66.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+.+|..+..+.+|+.+++++|.+.+.+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34444555556666666666666666555556666666666666666666555555555555666666666665555555
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|++|++++|.+.+.+|..++.++.|+
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 5555555666666666655555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=2e-16 Score=112.64 Aligned_cols=113 Identities=32% Similarity=0.541 Sum_probs=63.9
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+.+|..+..+++|++|++++|.+.+..|..+..+.+|+.+++.+|.+.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 34445555556666666666666666555555555556666666666555555555555555555555555555555555
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 555555555555555555555555555444444
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=99.05 Aligned_cols=95 Identities=37% Similarity=0.518 Sum_probs=85.1
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
.++.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788899999988899999999999999999999988899889999999999999999999999999999999999999
Q ss_pred cCccccccchHHhhh
Q 035618 97 KNQFFQELPKELEKV 111 (116)
Q Consensus 97 ~n~l~~~~p~~~~~l 111 (116)
+|.+++.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999988999877653
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-16 Score=91.25 Aligned_cols=105 Identities=28% Similarity=0.421 Sum_probs=72.8
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPES 83 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~ 83 (116)
...+|+.+..+.+|+.|++.+|++ ..+|.+++.++.|+.+++..|++. ..|.+|+.++.|..+++..|.+.. .+|..
T Consensus 45 l~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence 456777888888888888888888 778888888888888888888887 788888888888888888776542 34444
Q ss_pred HhcccCCCEEecccCccccccchHHhhhc
Q 035618 84 LGKLLKLHYLDLSKNQFFQELPKELEKVV 112 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~ 112 (116)
|..+..|+.+++++|.+ ..+|..+++++
T Consensus 123 ff~m~tlralyl~dndf-e~lp~dvg~lt 150 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDF-EILPPDVGKLT 150 (264)
T ss_pred hhHHHHHHHHHhcCCCc-ccCChhhhhhc
Confidence 44444444444444444 33444444443
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=9.6e-14 Score=95.30 Aligned_cols=104 Identities=29% Similarity=0.467 Sum_probs=92.1
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++++|.+.+.+|
T Consensus 428 n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 56678899999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-cCCCEEecccCccccccc
Q 035618 82 ESLGKL-LKLHYLDLSKNQFFQELP 105 (116)
Q Consensus 82 ~~~~~~-~~l~~l~l~~n~l~~~~p 105 (116)
..+... .++..+++.+|......|
T Consensus 508 ~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hHHhhccccCceEEecCCccccCCC
Confidence 887753 466788888887544433
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=4.8e-15 Score=86.03 Aligned_cols=111 Identities=29% Similarity=0.485 Sum_probs=78.6
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|+-+.++|.++..++.|+.|++..|++ ..+|..|+.++.|+++|+.+|.+.. .+|..|.-+..|+.+.++.|.+. -+
T Consensus 65 nnqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l 142 (264)
T KOG0617|consen 65 NNQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL 142 (264)
T ss_pred cchhhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC
Confidence 455778899999999999999999988 7788889999999999998887753 34555555555666666666553 44
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|..++.+++|+++.+.+|.+ -.+|++++.+++|+
T Consensus 143 p~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLR 176 (264)
T ss_pred ChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHH
Confidence 55566666666666666666 45566666655543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=2e-13 Score=88.02 Aligned_cols=98 Identities=31% Similarity=0.487 Sum_probs=57.5
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcce-----------------------ecCch
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT-----------------------GRLPP 58 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~-----------------------~~~~~ 58 (116)
|+..+-+|..++.+++|..|++++|.+ -.+|..++.+..|+.++++.|++. ..-++
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence 344455555566666666666666655 455655656656666666655544 22233
Q ss_pred hhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccc
Q 035618 59 EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFF 101 (116)
Q Consensus 59 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~ 101 (116)
+++.+.+|+.+++..|.+. .+|..+++|.+++++++.||.++
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4556666666666666653 45666666666666666666663
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-12 Score=87.80 Aligned_cols=99 Identities=25% Similarity=0.146 Sum_probs=53.1
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++...-+..|..+..++.|++..|+++..-..++..++.|+.+++++|.+....+++|..++.|++|+++.|+++..-+
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 34444444555556666666666666544444445555666666666666554445555555666666666665554434
Q ss_pred HHHhcccCCCEEecccCcc
Q 035618 82 ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l 100 (116)
+.|..+..|+.|.+++|++
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hHHHHHHHhhhhcccccch
Confidence 4444444444444444444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.24 E-value=7.8e-13 Score=88.79 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=56.7
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCc---HH
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIP---ES 83 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~---~~ 83 (116)
-++.+...++|.+|++++|.++...+.+|..+..|+.++++.|++. .+.+ .|..+++|..|++++|.+.|.+- ..
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 3344444444555555555554444444444555555555555554 2322 34555566666666666655432 23
Q ss_pred HhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618 84 LGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS 115 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~ 115 (116)
|..+++|+.|.+.||++ +.+| ++|.++..|+
T Consensus 388 f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALE 419 (873)
T ss_pred hccchhhhheeecCcee-eecchhhhccCcccc
Confidence 56667777777777777 4444 3566666654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.22 E-value=7.8e-13 Score=89.86 Aligned_cols=107 Identities=31% Similarity=0.427 Sum_probs=91.1
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
.-+|.++..+.+|..++++.|.+ ...|+.+.++.+|+.+++++|.++ ++......+.++..|++++|+++ .+|+.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence 34788888999999999999998 778999999999999999999998 67767778888999999999985 6789999
Q ss_pred cccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 86 KLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
.++.|+.|++.+|.+.- -+|..++++.+|+
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 99999999998888743 3788888887765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=3.8e-12 Score=82.27 Aligned_cols=75 Identities=31% Similarity=0.519 Sum_probs=63.9
Q ss_pred CCccccccCcCccCCcccceeeccccccccccc-----------------------h-hhcCCCCCCeEecccCcceecC
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIP-----------------------N-DLGKLNSLTKLILKWNQFTGRL 56 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-----------------------~-~~~~l~~l~~l~l~~~~~~~~~ 56 (116)
+|++.-.+|..++.+..|+.++++.|++ ...| + .+..|.+|.++|+.+|.+. .+
T Consensus 443 ~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I 520 (565)
T KOG0472|consen 443 SNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI 520 (565)
T ss_pred ccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence 4777888999999999999999998875 3333 2 3667888999999999999 89
Q ss_pred chhhhccCCCCeEEeeceeec
Q 035618 57 PPEISSFIKLEDIGLSINRFI 77 (116)
Q Consensus 57 ~~~~~~~~~L~~l~l~~n~~~ 77 (116)
|..+++|.+++++.+.+|++.
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChhhccccceeEEEecCCccC
Confidence 999999999999999999984
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=84.13 Aligned_cols=97 Identities=30% Similarity=0.417 Sum_probs=74.8
Q ss_pred Cccccc-cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccC
Q 035618 2 NNSTGD-IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 2 n~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~ 79 (116)
|++... +|..+.++..|+.|+++.|++ ...|..+....++-++++++|++. .+|.. +.++.-|..|+++.|++. .
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence 444433 777788888888888888887 777877777778888888888887 77764 567777888888888874 5
Q ss_pred CcHHHhcccCCCEEecccCccc
Q 035618 80 IPESLGKLLKLHYLDLSKNQFF 101 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~ 101 (116)
+|..+.++..|++|.+++|.+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhh
Confidence 6777788888888888888763
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=5.7e-11 Score=58.29 Aligned_cols=58 Identities=38% Similarity=0.558 Sum_probs=28.5
Q ss_pred CCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCc
Q 035618 41 SLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99 (116)
Q Consensus 41 ~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 99 (116)
+|+.+++++|.+. .+| ..+..+++|+++++++|.+...-+..|.++++|+.+++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444555555444 222 234445555555555555543333445555555555555554
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.2e-10 Score=57.18 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=51.8
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceee
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 76 (116)
++|+.|++++|++....+..|..+++|+++++++|.+...-+..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999655556788899999999999999854456789999999999998864
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.3e-09 Score=64.03 Aligned_cols=101 Identities=25% Similarity=0.322 Sum_probs=43.9
Q ss_pred Ccc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhh-hccCCCCeEEeeceeeccC-CcHHHhcc
Q 035618 11 EIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISS-IPESLGKL 87 (116)
Q Consensus 11 ~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~-~~~~~~~~ 87 (116)
.+. .+.+|+.|++++|.+. .++ .+..++.|+.+++++|++. .+.+.+ ..+++|+.|.+++|++... .-..+..+
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL 112 (175)
T ss_dssp S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence 344 4678888999999884 343 4677888999999999988 565554 4678899999998887531 11346678
Q ss_pred cCCCEEecccCccccccch----HHhhhcCCC
Q 035618 88 LKLHYLDLSKNQFFQELPK----ELEKVVQLS 115 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~----~~~~l~~L~ 115 (116)
++|+.+++.+|++... +. .+..+|+|+
T Consensus 113 ~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 113 PKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLK 143 (175)
T ss_dssp TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-S
T ss_pred CCcceeeccCCcccch-hhHHHHHHHHcChhh
Confidence 8899999999988433 32 355666654
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=8.5e-11 Score=82.27 Aligned_cols=97 Identities=30% Similarity=0.379 Sum_probs=66.2
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
+|.+.+..-+.+..+++|+.|++++|++.......+.++..|+.+++++|.++ .+|+.+..+.+|++|...+|++. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 35666666667778888888888888884444455667888888888888887 67776666666666666666653 33
Q ss_pred cHHHhcccCCCEEecccCcc
Q 035618 81 PESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l 100 (116)
| .+..++.|+.+|++.|.+
T Consensus 446 P-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred h-hhhhcCcceEEecccchh
Confidence 4 455555666666666655
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.88 E-value=7e-09 Score=76.01 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
.+.+|..+..+++|+.|++++|...+.+|... .+++|+.+++++|.....+|.. ..+++.|++++|.+. .+|..+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si 865 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWI 865 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHH
Confidence 33455555555556666655554334444433 4455555555554332233322 134556666666553 456666
Q ss_pred hcccCCCEEecccCccccccchHHhhhcCC
Q 035618 85 GKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
..+++|+.+++.+|.-...+|..+..++.|
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 667777777776644334455544444443
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=4e-09 Score=62.03 Aligned_cols=97 Identities=33% Similarity=0.440 Sum_probs=32.9
Q ss_pred cCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH-hcccCC
Q 035618 13 GKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL-GKLLKL 90 (116)
Q Consensus 13 ~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~~l 90 (116)
.+...++.|++++|.++. +. .+. .+.+|+.+++++|.+. .+ +.+..++.|+.|++++|.++. +.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 445578999999999944 33 455 5789999999999998 44 357788999999999999864 54444 468999
Q ss_pred CEEecccCccccccc--hHHhhhcCCC
Q 035618 91 HYLDLSKNQFFQELP--KELEKVVQLS 115 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p--~~~~~l~~L~ 115 (116)
+.|++++|.+ ..+- ..+..++.|+
T Consensus 91 ~~L~L~~N~I-~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 91 QELYLSNNKI-SDLNELEPLSSLPKLR 116 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--
T ss_pred CEEECcCCcC-CChHHhHHHHcCCCcc
Confidence 9999999999 3332 2355555554
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=1.3e-09 Score=73.29 Aligned_cols=104 Identities=31% Similarity=0.486 Sum_probs=86.3
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|+-.+.+|..++.+..|..++.+.|.+ ..+|..+..+.+|+.+.+..|++. .+|..+..++ |..||++.|++. .+|
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iP 227 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecc
Confidence 444677888888888999999999988 677888888999999999999888 7888877444 888999999985 788
Q ss_pred HHHhcccCCCEEecccCccccccchHHhh
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEK 110 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~ 110 (116)
-.|.+|..|+.+-|.+|.+ ..-|..++.
T Consensus 228 v~fr~m~~Lq~l~LenNPL-qSPPAqIC~ 255 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPL-QSPPAQICE 255 (722)
T ss_pred hhhhhhhhheeeeeccCCC-CCChHHHHh
Confidence 8899999999999999999 555666664
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.78 E-value=1.8e-08 Score=73.87 Aligned_cols=90 Identities=28% Similarity=0.282 Sum_probs=45.1
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
++..+..+++|+.++++++...+.+| .+..+++|+.+++.+|.....+|..+..+.+|+.|++.+|.....+|..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 34444455555555555544324444 24455556666665554333555555555666666665543333444332 34
Q ss_pred cCCCEEecccCc
Q 035618 88 LKLHYLDLSKNQ 99 (116)
Q Consensus 88 ~~l~~l~l~~n~ 99 (116)
++|+.|++++|.
T Consensus 704 ~sL~~L~Lsgc~ 715 (1153)
T PLN03210 704 KSLYRLNLSGCS 715 (1153)
T ss_pred CCCCEEeCCCCC
Confidence 444555554443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=2.1e-09 Score=75.58 Aligned_cols=91 Identities=31% Similarity=0.478 Sum_probs=75.6
Q ss_pred cccCc-CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC-CcHH
Q 035618 6 GDIPC-EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS-IPES 83 (116)
Q Consensus 6 ~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~ 83 (116)
+.+|. .+.++..|+.|++++|++ ..+|..+..++.|+++....|++. .+| .+.++++|+.+|++.|.+... +|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 44444 477899999999999999 778899999999999999999998 788 778999999999999998643 3332
Q ss_pred HhcccCCCEEecccCcc
Q 035618 84 LGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l 100 (116)
. ..++|++||++||.-
T Consensus 473 ~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 L-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred C-CCcccceeeccCCcc
Confidence 2 227999999999984
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=3.8e-09 Score=66.71 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=63.2
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
|.+-.....|..|+.+|+++|.+ ..+..+..-++.++.++++.|++. .+ +.+..+++|+.|++++|.++ .+..+-.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHh
Confidence 33444566788899999999988 667777777889999999999887 33 33778888999999888664 2223333
Q ss_pred cccCCCEEecccCcc
Q 035618 86 KLLKLHYLDLSKNQF 100 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l 100 (116)
.+.++++|.+++|.+
T Consensus 350 KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKI 364 (490)
T ss_pred hhcCEeeeehhhhhH
Confidence 444455555555544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=6.4e-09 Score=66.19 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=7.5
Q ss_pred cccCCCEEecccCcc
Q 035618 86 KLLKLHYLDLSKNQF 100 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l 100 (116)
.+++|+.+++++|.+
T Consensus 219 ~~~~L~~L~ls~n~l 233 (319)
T cd00116 219 SLKSLEVLNLGDNNL 233 (319)
T ss_pred ccCCCCEEecCCCcC
Confidence 344455555555554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.69 E-value=4e-08 Score=69.21 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=61.9
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
.|+.|++++|.++ .+|.. .++|+.+++++|.+. .+|... ..|+.|++++|+++ .+|..+..+++++.++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 4566666666663 34432 346777777777777 566533 34667888888875 688888999999999999
Q ss_pred cCccccccchHHhhhc
Q 035618 97 KNQFFQELPKELEKVV 112 (116)
Q Consensus 97 ~n~l~~~~p~~~~~l~ 112 (116)
+|.+++..|..+..+.
T Consensus 454 ~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 454 GNPLSERTLQALREIT 469 (788)
T ss_pred CCCCCchHHHHHHHHh
Confidence 9999888887775543
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=8.4e-10 Score=71.38 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=46.5
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeec-eeeccCCcHHHhcccCCCEEec
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSI-NRFISSIPESLGKLLKLHYLDL 95 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l 95 (116)
..+.+.+..|.++...+..|+.+.+|+.++++.|.+...-|++|..+.++..+.+-+ |+++......|.++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344555555555444444455555555555555555533444555555554444333 4443322234455555554544
Q ss_pred ccCccccccchHHhhhcC
Q 035618 96 SKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~ 113 (116)
.-|.+.-...++|..+++
T Consensus 148 Nan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPS 165 (498)
T ss_pred ChhhhcchhHHHHHHhhh
Confidence 444443333344444443
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=8.5e-09 Score=66.88 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=69.7
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
|.++++|+.+++++|+++..-+..|..+.+++.+.+..|++...-...|..+..|+.|++.+|+++...|.+|....+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 66788888888888888777777788888888888888888733334577788888888888888877777788778888
Q ss_pred EEecccCcc
Q 035618 92 YLDLSKNQF 100 (116)
Q Consensus 92 ~l~l~~n~l 100 (116)
.+.+-.|.+
T Consensus 350 ~l~l~~Np~ 358 (498)
T KOG4237|consen 350 TLNLLSNPF 358 (498)
T ss_pred eeehccCcc
Confidence 888877764
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=8.8e-09 Score=65.56 Aligned_cols=39 Identities=31% Similarity=0.185 Sum_probs=16.1
Q ss_pred CCcccceeeccccccccccchhhcCCCC---CCeEecccCcc
Q 035618 14 KSSHLHAFDLLFNHLFVEIPNDLGKLNS---LTKLILKWNQF 52 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~---l~~l~l~~~~~ 52 (116)
.+++|+.|++++|.+....+..+..+.. |+.+++++|.+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 3444455555444443223333322222 44444444443
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=4.1e-08 Score=70.13 Aligned_cols=87 Identities=26% Similarity=0.353 Sum_probs=62.5
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
|..++.|+.||+++|.-.+.+|..++.+-+|++|++++..+. .+|.++..+..|.+|++..+.-...+|.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 556777888888877766777777777778888888777777 7777777777777777776654444455556677777
Q ss_pred EEecccCc
Q 035618 92 YLDLSKNQ 99 (116)
Q Consensus 92 ~l~l~~n~ 99 (116)
++.+....
T Consensus 646 ~L~l~~s~ 653 (889)
T KOG4658|consen 646 VLRLPRSA 653 (889)
T ss_pred EEEeeccc
Confidence 77776543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=8.4e-09 Score=69.56 Aligned_cols=107 Identities=34% Similarity=0.449 Sum_probs=72.4
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeec-------
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFI------- 77 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~------- 77 (116)
+..+|..+..+..|++++++.|++ ..+|..++.++ |+.+-+++|+++ .+|+.++....|..++.+.|.+.
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 445677778888888888888877 55666666555 566666666666 55655555555555555555432
Q ss_pred ---------------cCCcHHHhcccCCCEEecccCccccccchHHhhhcCCCC
Q 035618 78 ---------------SSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLSE 116 (116)
Q Consensus 78 ---------------~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~ 116 (116)
-.+|+.++.+ .|..||++.|++ ..+|-.|.+|+.|++
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNki-s~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKI-SYLPVDFRKMRHLQV 238 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCce-eecchhhhhhhhhee
Confidence 1345555533 478999999999 788999999988763
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.4e-08 Score=64.27 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=44.7
Q ss_pred cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceee
Q 035618 4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRF 76 (116)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 76 (116)
.+..++.+..-++.++.|+++.|++... ..+..+++|+.+|+++|.+. .+..+...+-+.+.|.++.|.+
T Consensus 295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 295 LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 3456666666778888888888887432 23666778888888888776 4444444444455555555543
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=2.4e-07 Score=42.28 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=23.5
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcce
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT 53 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~ 53 (116)
++|++|++++|.+ ..+|+.+..+++|+.+++++|.++
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCC
Confidence 3566777777777 345656677777777777777665
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-07 Score=66.97 Aligned_cols=98 Identities=30% Similarity=0.405 Sum_probs=74.4
Q ss_pred cccceeeccccc--cccccchh-hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCE
Q 035618 16 SHLHAFDLLFNH--LFVEIPND-LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHY 92 (116)
Q Consensus 16 ~~L~~l~l~~n~--~~~~~~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 92 (116)
+.|+.|-+..|. + ..++.. |..++.|++||+++|.-.+.+|..++.+-+|++|++.++.+. .+|..+..++.|.+
T Consensus 545 ~~L~tLll~~n~~~l-~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWL-LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhh-hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 357777777775 3 334433 566889999999988766688888888888999998888864 78888888888899
Q ss_pred EecccCccccccchHHhhhcCCC
Q 035618 93 LDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 93 l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|++..+.-...+|..++.|++|+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred eccccccccccccchhhhccccc
Confidence 98888776556666667677765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.4e-07 Score=62.00 Aligned_cols=89 Identities=34% Similarity=0.545 Sum_probs=48.2
Q ss_pred CcccceeeccccccccccchhhcCCC-CCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLN-SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL 93 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 93 (116)
++.++.+++..|.+ ..+++....+. +|+.++++.|.+. .+|..+..++.|+.|+++.|++. .+|......+.++.+
T Consensus 115 ~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccc-ccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 34555666666655 44444444442 5666666666665 45455555666666666666553 334333355555666
Q ss_pred ecccCccccccchH
Q 035618 94 DLSKNQFFQELPKE 107 (116)
Q Consensus 94 ~l~~n~l~~~~p~~ 107 (116)
++++|.+ ..+|..
T Consensus 192 ~ls~N~i-~~l~~~ 204 (394)
T COG4886 192 DLSGNKI-SDLPPE 204 (394)
T ss_pred eccCCcc-ccCchh
Confidence 6666666 444543
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=6.2e-07 Score=63.38 Aligned_cols=75 Identities=27% Similarity=0.463 Sum_probs=37.4
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
+|+.|++++|.+ ..+|..+. .+|+.+++++|.+. .+|..+. ..|+.|++++|++. .+|..+. .+|+.|+++
T Consensus 221 nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQL-TSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCcc-ccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 444444444444 23333221 24555555555554 4444432 35666666666654 3454332 356666666
Q ss_pred cCcc
Q 035618 97 KNQF 100 (116)
Q Consensus 97 ~n~l 100 (116)
+|.+
T Consensus 292 ~N~L 295 (754)
T PRK15370 292 DNSI 295 (754)
T ss_pred CCcc
Confidence 6666
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=4.8e-08 Score=55.18 Aligned_cols=89 Identities=25% Similarity=0.367 Sum_probs=53.3
Q ss_pred cCCcccceeeccccccccccchhhcC-CCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 13 GKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 13 ~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
.+..+|..+++++|.+ ...|+.|.. .+.++.+++.+|.+. .+|..+..++.|+.++++.|++. ..|..+..+.++.
T Consensus 50 ~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 3445556666666666 555555543 346666666666666 56666666666666666666654 3455555566666
Q ss_pred EEecccCccccccc
Q 035618 92 YLDLSKNQFFQELP 105 (116)
Q Consensus 92 ~l~l~~n~l~~~~p 105 (116)
.|+..+|.+ .++|
T Consensus 127 ~Lds~~na~-~eid 139 (177)
T KOG4579|consen 127 MLDSPENAR-AEID 139 (177)
T ss_pred HhcCCCCcc-ccCc
Confidence 666666665 4444
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.6e-07 Score=60.73 Aligned_cols=107 Identities=33% Similarity=0.471 Sum_probs=82.2
Q ss_pred ccccccCcCccCCc-ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 3 NSTGDIPCEIGKSS-HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 3 ~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
+-...++.....+. +|+.+++++|.+ ..+|..+..++.|+.+++..|.+. .++...+....|..+++++|++. .+|
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~ 202 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP 202 (394)
T ss_pred cccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCc
Confidence 33556666666674 899999999998 666666788999999999999998 77877768889999999999975 677
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~ 113 (116)
........|..+.+++|.+ -..+..+.++..
T Consensus 203 ~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~ 233 (394)
T COG4886 203 PEIELLSALEELDLSNNSI-IELLSSLSNLKN 233 (394)
T ss_pred hhhhhhhhhhhhhhcCCcc-eecchhhhhccc
Confidence 7666666799999999964 333444555544
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=5.2e-07 Score=41.18 Aligned_cols=35 Identities=37% Similarity=0.588 Sum_probs=22.3
Q ss_pred CCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618 65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l 100 (116)
+|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4666677777665 4555566777777777777776
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=1.8e-06 Score=61.16 Aligned_cols=90 Identities=32% Similarity=0.493 Sum_probs=69.6
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+|..+. +.++.|++++|.+ ..+|..+. .+|+.+++++|.++ .+|..+. ..|+.|++++|.+. .+|..+.
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~- 261 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP- 261 (754)
T ss_pred cCCcccc--cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-
Confidence 4555443 4789999999998 46776654 58999999999998 7887654 47899999999986 6777654
Q ss_pred ccCCCEEecccCccccccchHH
Q 035618 87 LLKLHYLDLSKNQFFQELPKEL 108 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~ 108 (116)
.+|+.|++++|.++ .+|..+
T Consensus 262 -s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 262 -SALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred -CCCCEEECcCCccC-cccccc
Confidence 57999999999994 667644
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=7.5e-07 Score=63.06 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.|+.|++++|.+. .+|.. ..+|+.|++++|.+ +.+|..++.++.|+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~ 448 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSET 448 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcc-cccChHHhhccCCC
Confidence 4555556665554 34432 23456677777777 56777777776654
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=6.2e-08 Score=54.72 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=74.0
Q ss_pred cccceeeccccccccccch---hhcCCCCCCeEecccCcceecCchhhhc-cCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 16 SHLHAFDLLFNHLFVEIPN---DLGKLNSLTKLILKWNQFTGRLPPEISS-FIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~---~~~~l~~l~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
..+..++++.+.+ ..+++ .+.+..+|...++++|.++ .+|..+.. .+.++.+++.+|.+. .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 4566778888876 43443 3455667888899999999 78887755 447899999999984 7899999999999
Q ss_pred EEecccCccccccchHHhhhcC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~ 113 (116)
.++++.|.+ ...|+.+..+..
T Consensus 104 ~lNl~~N~l-~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 104 SLNLRFNPL-NAEPRVIAPLIK 124 (177)
T ss_pred hcccccCcc-ccchHHHHHHHh
Confidence 999999999 667887776654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=2.5e-07 Score=64.55 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=67.1
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcHHH
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
..++..+.-++.++.|+++.|+++. .. .+..+++|++||+++|.+. .+|.- ...|. |..|.+++|.++. + ..+
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gi 250 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGI 250 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhH
Confidence 3455666677888999999998844 33 6778889999999999888 67763 33444 8888888887643 2 346
Q ss_pred hcccCCCEEecccCcccc
Q 035618 85 GKLLKLHYLDLSKNQFFQ 102 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~ 102 (116)
.++.+|..||+++|-+.+
T Consensus 251 e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HhhhhhhccchhHhhhhc
Confidence 788888899999888733
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=3.2e-06 Score=56.22 Aligned_cols=87 Identities=33% Similarity=0.397 Sum_probs=59.8
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..++++..+++.+|.+ ..+...+..+.+|+++++++|.+.. -..+..+..|+.|++.+|.+.. + ..+..+.+|
T Consensus 90 ~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISD-I-SGLESLKSL 164 (414)
T ss_pred ccccccceeeeeccccch-hhcccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchh-c-cCCccchhh
Confidence 366677888888888887 4444335678888888888888873 2234455668888888887742 2 234457778
Q ss_pred CEEecccCcccc
Q 035618 91 HYLDLSKNQFFQ 102 (116)
Q Consensus 91 ~~l~l~~n~l~~ 102 (116)
+.+++++|.+..
T Consensus 165 ~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 165 KLLDLSYNRIVD 176 (414)
T ss_pred hcccCCcchhhh
Confidence 888888888733
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=1.9e-05 Score=47.45 Aligned_cols=85 Identities=29% Similarity=0.196 Sum_probs=44.7
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch--hhhccCCCCeEEeeceeeccCC--cH-HHhc
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP--EISSFIKLEDIGLSINRFISSI--PE-SLGK 86 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~--~~-~~~~ 86 (116)
|..++.|.+|.+..|+++...|.--..++.++.+.+.+|.+. ++.+ .+..|+.|+.|.+-+|+....- .. .++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 455666666666666664333322223455666666666665 3332 3555666666666666543210 00 1345
Q ss_pred ccCCCEEeccc
Q 035618 87 LLKLHYLDLSK 97 (116)
Q Consensus 87 ~~~l~~l~l~~ 97 (116)
+++++++|+.+
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 56666666654
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=3e-06 Score=59.42 Aligned_cols=94 Identities=28% Similarity=0.377 Sum_probs=70.0
Q ss_pred CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD 94 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 94 (116)
+-.|...+.+.|++ ..+..++.-++.++.|+++.|++. . -+.+..|+.|++||++.|.+. .+|..-..-..|..|.
T Consensus 163 Wn~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~-~-v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRL-VLMDESLQLLPALESLNLSHNKFT-K-VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhh-h-hHHHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 45677788888988 777788888899999999999987 3 337888999999999999875 5554222222489999
Q ss_pred cccCccccccchHHhhhcCC
Q 035618 95 LSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 95 l~~n~l~~~~p~~~~~l~~L 114 (116)
+.+|.+ ..+ ..+.++++|
T Consensus 239 lrnN~l-~tL-~gie~LksL 256 (1096)
T KOG1859|consen 239 LRNNAL-TTL-RGIENLKSL 256 (1096)
T ss_pred ecccHH-Hhh-hhHHhhhhh
Confidence 999998 333 235555554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=1.6e-05 Score=52.90 Aligned_cols=87 Identities=31% Similarity=0.391 Sum_probs=66.5
Q ss_pred CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618 14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL 93 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 93 (116)
.+..+..++++.|.+. .....+..+.++..+++..|.+. .+...+..+.+|++++++.|.+... ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4556667777888773 33344778889999999999998 5555477889999999999998644 345677779999
Q ss_pred ecccCccccccc
Q 035618 94 DLSKNQFFQELP 105 (116)
Q Consensus 94 ~l~~n~l~~~~p 105 (116)
++.+|.+ ..+.
T Consensus 146 ~l~~N~i-~~~~ 156 (414)
T KOG0531|consen 146 NLSGNLI-SDIS 156 (414)
T ss_pred eeccCcc-hhcc
Confidence 9999999 4443
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=1.3e-05 Score=53.01 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=48.0
Q ss_pred ccCCcccceeeccccccccccc--hhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcH-HHhcc
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIP--NDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPE-SLGKL 87 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~~~~~ 87 (116)
...+++++.|+++.|-+....+ .-...+++|+.|+++.|++.-..... -..+++++.|.+++|.+++.-.. ....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4557778888888876643322 12335777777777777775322221 12455667777777766543221 22344
Q ss_pred cCCCEEecccC
Q 035618 88 LKLHYLDLSKN 98 (116)
Q Consensus 88 ~~l~~l~l~~n 98 (116)
+++..|++..|
T Consensus 222 Psl~~L~L~~N 232 (505)
T KOG3207|consen 222 PSLEVLYLEAN 232 (505)
T ss_pred CcHHHhhhhcc
Confidence 45555555544
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.45 E-value=5.3e-05 Score=29.17 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=14.5
Q ss_pred CCCEEecccCccccccchHHhh
Q 035618 89 KLHYLDLSKNQFFQELPKELEK 110 (116)
Q Consensus 89 ~l~~l~l~~n~l~~~~p~~~~~ 110 (116)
+|++|++++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3677888888774 67766554
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=9.6e-06 Score=51.13 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch--hhhccCCCCeEEeeceeeccCCcHH-----Hhc
Q 035618 14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP--EISSFIKLEDIGLSINRFISSIPES-----LGK 86 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~-----~~~ 86 (116)
+++.|+.|.++.|++++.-| +..+..|+.+++..|.+. .+.+ .+.++++|+.|.+..|++-+..+.. +.-
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 57778888888888755443 556778888888888776 3443 3567788888888888776665532 445
Q ss_pred ccCCCEEe
Q 035618 87 LLKLHYLD 94 (116)
Q Consensus 87 ~~~l~~l~ 94 (116)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 66777665
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=0.00014 Score=45.16 Aligned_cols=86 Identities=24% Similarity=0.234 Sum_probs=48.9
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccC--cceecCchhhhccCCCCeEEeeceeecc--CCcHHHhcc
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWN--QFTGRLPPEISSFIKLEDIGLSINRFIS--SIPESLGKL 87 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~ 87 (116)
...+..|+.+.+.+..+++. ..+..+++|+.+.++.| +..+.++-....+++|+++++++|++.- .+ .....+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence 33445555666555554332 23456667777777777 5554444444455777777777776641 11 123455
Q ss_pred cCCCEEecccCcc
Q 035618 88 LKLHYLDLSKNQF 100 (116)
Q Consensus 88 ~~l~~l~l~~n~l 100 (116)
.+|..|++.+|..
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 6667777777665
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=0.00016 Score=44.91 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=62.4
Q ss_pred CccCCcccceeecccc--ccccccchhhcCCCCCCeEecccCcceecCch---hhhccCCCCeEEeeceeeccCCc---H
Q 035618 11 EIGKSSHLHAFDLLFN--HLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP---EISSFIKLEDIGLSINRFISSIP---E 82 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~---~ 82 (116)
.+..+++|+.|.++.| ++.+.++.-...+++|+++++++|++.. ++ ....+.+|..|++..|..+..-. .
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 4667889999999999 7777777666677999999999999872 33 34566778888888876654211 2
Q ss_pred HHhcccCCCEEeccc
Q 035618 83 SLGKLLKLHYLDLSK 97 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~ 97 (116)
.|.-+++|++++-..
T Consensus 138 vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHhhhhccccccc
Confidence 356677887777544
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=3.9e-05 Score=50.88 Aligned_cols=88 Identities=26% Similarity=0.211 Sum_probs=53.4
Q ss_pred cCCcccceeeccccccccccchhh-cCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 13 GKSSHLHAFDLLFNHLFVEIPNDL-GKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 13 ~~l~~L~~l~l~~n~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
..+++|+.|+++.|++........ ..+++++.+.++.|.+....-.. ...++.+..|.+..|.....-......++.|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 456788888888887643333221 13567888888888776322222 3457778888887774221111223445667
Q ss_pred CEEecccCcc
Q 035618 91 HYLDLSKNQF 100 (116)
Q Consensus 91 ~~l~l~~n~l 100 (116)
+.||+++|++
T Consensus 249 ~~LdLs~N~l 258 (505)
T KOG3207|consen 249 QELDLSNNNL 258 (505)
T ss_pred hhccccCCcc
Confidence 7888888877
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.32 E-value=5.5e-05 Score=48.83 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=57.3
Q ss_pred cCccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceecCchhh-----hccCCCCeEEeeceeeccCC
Q 035618 10 CEIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGRLPPEI-----SSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 10 ~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~~~ 80 (116)
..+..+++|+.||+++|.++.. +...++..++|+.+++..|.+...-...+ ...+.|.++.+.+|.++..-
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 3456677788888888876442 33445566777777777777764333322 12567777887777765432
Q ss_pred c----HHHhcccCCCEEecccCcc
Q 035618 81 P----ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 81 ~----~~~~~~~~l~~l~l~~n~l 100 (116)
. ..+...+.|..|++++|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 1 2234566777888888877
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00062 Score=41.16 Aligned_cols=83 Identities=28% Similarity=0.313 Sum_probs=59.7
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc--HHHhcccCCCEE
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP--ESLGKLLKLHYL 93 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~l~~l 93 (116)
.+...+|+++|.+ ..+ +.|..++.|.++.+.+|++....|.--..++++..|.+.+|++. .+. +.+..++.|+.|
T Consensus 42 d~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccch-hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4567788888887 433 35677888999999999998433433345667889999988874 222 235678889999
Q ss_pred ecccCccc
Q 035618 94 DLSKNQFF 101 (116)
Q Consensus 94 ~l~~n~l~ 101 (116)
.+-+|.+.
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 98888873
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.0004 Score=49.24 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=59.7
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc--hhhhccCCCCeEEeeceeeccCC--c----HH
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP--PEISSFIKLEDIGLSINRFISSI--P----ES 83 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~--~----~~ 83 (116)
..++++|..||++++.++.. ..++.+.+|+.|.+.+-.+. ... ..+.+++.|+.||++........ . +.
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 34577888888888877333 45677788887766664444 222 24567888999999876543211 1 11
Q ss_pred HhcccCCCEEecccCccccccch
Q 035618 84 LGKLLKLHYLDLSKNQFFQELPK 106 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p~ 106 (116)
...+++|+.||.+++.+.+.+-+
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cccCccccEEecCCcchhHHHHH
Confidence 23578899999998877555433
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.00074 Score=47.97 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=25.8
Q ss_pred CCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHHHhcccCCCEEecccCc
Q 035618 39 LNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPESLGKLLKLHYLDLSKNQ 99 (116)
Q Consensus 39 l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~n~ 99 (116)
.++|..||+++..+. .+ .++..+++|+.|.+.+=.+.. ..-..+..+++|++||++...
T Consensus 172 FpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 172 FPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 444555555555444 11 344444444444443322211 000123455666666666544
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00063 Score=43.64 Aligned_cols=86 Identities=23% Similarity=0.190 Sum_probs=47.1
Q ss_pred Ccccceeeccccccccc--cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc-HHHhcccCCC
Q 035618 15 SSHLHAFDLLFNHLFVE--IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP-ESLGKLLKLH 91 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~--~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~ 91 (116)
.+.++.+++.+|.++.+ +..-+..+|++++++++.|.+...+...-....+|+.+.+.++.+.+.-. .....++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 35566777777776432 11223457777777777777653332221344566666666655443322 2344555666
Q ss_pred EEecccCcc
Q 035618 92 YLDLSKNQF 100 (116)
Q Consensus 92 ~l~l~~n~l 100 (116)
.++++.|++
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 666666643
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0075 Score=33.39 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=32.8
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++++.+.+..+ +...-...|..+.+++.+.+.. .+...-...+..+.+++.+.+..+ +...-...+.++ .++
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444445555555543 3222223344444555555543 222112223445566666666443 221112234444 556
Q ss_pred EEecccCccccccchHHhhhcCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+.+.. .+...-...|.+++.|
T Consensus 107 ~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT-B-SS----GGG-----
T ss_pred EEEECC-CccEECCccccccccC
Confidence 665543 3322223345555444
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.61 E-value=0.0016 Score=23.33 Aligned_cols=16 Identities=50% Similarity=0.798 Sum_probs=8.1
Q ss_pred CCCEEecccCccccccc
Q 035618 89 KLHYLDLSKNQFFQELP 105 (116)
Q Consensus 89 ~l~~l~l~~n~l~~~~p 105 (116)
+|+.|++++|++ ..+|
T Consensus 2 ~L~~L~l~~n~L-~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRL-TSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCCC-CCCc
Confidence 567777777776 4444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.42 E-value=0.0072 Score=40.55 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=52.0
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+.++..|++++|.+ ..+| . -..+|+.+.+.++.-...+|+.+. ..|+.|.+.+|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L-~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDI-ESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCC-cccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 33467888999999877 5555 2 234688888877533225665542 4678888887732233443 355
Q ss_pred EEecccCcc--ccccchHHhhh
Q 035618 92 YLDLSKNQF--FQELPKELEKV 111 (116)
Q Consensus 92 ~l~l~~n~l--~~~~p~~~~~l 111 (116)
.|++..+.. .+.+|..+..|
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred eEEeCCCCCcccccCcchHhhe
Confidence 555555442 24556555544
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00037 Score=44.24 Aligned_cols=86 Identities=22% Similarity=0.147 Sum_probs=63.3
Q ss_pred CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH--HHhcccCCCE
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE--SLGKLLKLHY 92 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~~~~l~~ 92 (116)
+.+...|+.-++.+.. +. -..+|+.|+++.++-|.++. ...+..|+.|+.+.+..|.+. .+.+ -+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH-HH-HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 4455666777776632 21 23579999999999999983 445778999999999999874 3333 3578999999
Q ss_pred EecccCccccccc
Q 035618 93 LDLSKNQFFQELP 105 (116)
Q Consensus 93 l~l~~n~l~~~~p 105 (116)
|++..|...+.-+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 9999998766554
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.28 E-value=0.0044 Score=39.49 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=59.3
Q ss_pred Ccccceeeccccccccccchhh----cCCCCCCeEeccc---CcceecCch-------hhhccCCCCeEEeeceeeccCC
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDL----GKLNSLTKLILKW---NQFTGRLPP-------EISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~----~~l~~l~~l~l~~---~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
+..+..+++++|.++......+ ..-.+|+..+++. .+.+.++++ .+-.|+.++..+++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5677888999998866544433 3345666666553 222333333 3446788888999998887666
Q ss_pred cHH----HhcccCCCEEecccCccccccc
Q 035618 81 PES----LGKLLKLHYLDLSKNQFFQELP 105 (116)
Q Consensus 81 ~~~----~~~~~~l~~l~l~~n~l~~~~p 105 (116)
|+. +.+...+.+|.+.+|-+ |++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl-Gp~a 136 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL-GPIA 136 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC-Cccc
Confidence 643 55667888998888887 6543
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.22 E-value=0.0063 Score=39.73 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCC----c
Q 035618 14 KSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSI----P 81 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~----~ 81 (116)
.-+.|+.+....|++... +...+...+.|+.+.++.|.+... +...+..|++|+.|++..|-++..- .
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 344556666666654221 222333445555555555554311 1123445555555555555443211 1
Q ss_pred HHHhcccCCCEEecccCcc
Q 035618 82 ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l 100 (116)
..++.+++|+.+++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhcccchheeeccccccc
Confidence 2234445555555555554
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.03 E-value=8.5e-05 Score=45.90 Aligned_cols=90 Identities=26% Similarity=0.293 Sum_probs=70.5
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+......+.||++.|+. ...-..|+.+..+..++++.|.+. ..|..+++...+..+++..|.+ ...|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence 456667788889988886 555566777888888899999888 7888888888888887777665 4678888888999
Q ss_pred CEEecccCccccc
Q 035618 91 HYLDLSKNQFFQE 103 (116)
Q Consensus 91 ~~l~l~~n~l~~~ 103 (116)
+.+++-+|.+...
T Consensus 114 k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 114 KKNEQKKTEFFRK 126 (326)
T ss_pred chhhhccCcchHH
Confidence 9999888876433
No 64
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.95 E-value=0.0045 Score=24.03 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=12.2
Q ss_pred cCCCEEecccCccccccchHH
Q 035618 88 LKLHYLDLSKNQFFQELPKEL 108 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~ 108 (116)
++|+.|++++|.++.+.+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 467777777777755554444
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.76 E-value=0.029 Score=35.95 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=29.0
Q ss_pred ccCCcccceeeccccccccccchh----hcCCCCCCeEecccCcce
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPND----LGKLNSLTKLILKWNQFT 53 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~----~~~l~~l~~l~l~~~~~~ 53 (116)
+-++++|+.+++++|-++...|+. ++....+.++.+.+|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 456788888888888875555543 344566777777777664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.39 E-value=0.026 Score=31.18 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=48.6
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPESLGKLLK 89 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 89 (116)
.|..+++|+.+.+.. .+...-...|..+.+++.+.+..+ +. .++. .+..+..++.+.+..+ +...-...|..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc-cccccccccccccc
Confidence 466778899999875 453444456777878999998775 55 3444 5777878999988652 22122235677889
Q ss_pred CCEEecccC
Q 035618 90 LHYLDLSKN 98 (116)
Q Consensus 90 l~~l~l~~n 98 (116)
++.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 999998765
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.24 E-value=0.023 Score=22.37 Aligned_cols=19 Identities=47% Similarity=0.618 Sum_probs=14.2
Q ss_pred cCCCEEecccCccccccchH
Q 035618 88 LKLHYLDLSKNQFFQELPKE 107 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~ 107 (116)
++|+.|++++|.+ ..+|..
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQL-SSLPPG 20 (26)
T ss_pred CCCCEEECCCCcC-CcCCHH
Confidence 5678888888888 555654
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.24 E-value=0.023 Score=22.37 Aligned_cols=19 Identities=47% Similarity=0.618 Sum_probs=14.2
Q ss_pred cCCCEEecccCccccccchH
Q 035618 88 LKLHYLDLSKNQFFQELPKE 107 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~ 107 (116)
++|+.|++++|.+ ..+|..
T Consensus 2 ~~L~~L~L~~N~l-~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQL-SSLPPG 20 (26)
T ss_pred CCCCEEECCCCcC-CcCCHH
Confidence 5678888888888 555654
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.024 Score=36.72 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCCeEecccCcceecCch---hhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618 39 LNSLTKLILKWNQFTGRLPP---EISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 39 l~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l 100 (116)
..+++.+++.+|.+. .+.+ .+.+++.++.|+++.|++...+...-....+|+.+-+.|..+
T Consensus 70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 566778888888876 3333 456788888888888877654432112445677777766554
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.18 E-value=0.053 Score=36.60 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=48.9
Q ss_pred hcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccC-ccccccchHHhhh
Q 035618 36 LGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKN-QFFQELPKELEKV 111 (116)
Q Consensus 36 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n-~l~~~~p~~~~~l 111 (116)
+..+.++..|++++|.++ .+|. + -.+|+.|.+.++.-...+|+.+ ..+|+.|++++| .+ ..+|..+..|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLPESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccccccceE
Confidence 334678999999999888 6773 1 2358899998754444566654 358999999998 55 6778766544
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.012 Score=38.04 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=50.3
Q ss_pred ccceeeccccccccc-cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeecee-eccC-CcHHHhcccCCCEE
Q 035618 17 HLHAFDLLFNHLFVE-IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR-FISS-IPESLGKLLKLHYL 93 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~l~~l 93 (116)
.++.+|++...++.. +-.-++.+.+|+.+.+.++++...+...+.....|..++++.+. ++.. +.-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 467777777665332 22224456677777777777765555566666777777776543 1111 11124566677777
Q ss_pred ecccCccccc
Q 035618 94 DLSKNQFFQE 103 (116)
Q Consensus 94 ~l~~n~l~~~ 103 (116)
+++-|.+..+
T Consensus 266 NlsWc~l~~~ 275 (419)
T KOG2120|consen 266 NLSWCFLFTE 275 (419)
T ss_pred CchHhhccch
Confidence 7776665443
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.15 Score=33.28 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=27.8
Q ss_pred CCCCCCeEecccC-cceecCchhhhccCCCCeEEeeceeeccCCcHH---HhcccCCCEEeccc
Q 035618 38 KLNSLTKLILKWN-QFTGRLPPEISSFIKLEDIGLSINRFISSIPES---LGKLLKLHYLDLSK 97 (116)
Q Consensus 38 ~l~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~l~~l~l~~ 97 (116)
+++++..+|++.+ .++......+.+++.|+++.+++|= +.+|.. +..++.+.+|++-+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 3556666666554 2332222344455556665555442 233332 34455555665544
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.02 E-value=0.15 Score=20.33 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=13.8
Q ss_pred cCCCEEecccCccccccch
Q 035618 88 LKLHYLDLSKNQFFQELPK 106 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~ 106 (116)
.+|+.|++++|++ ..+|+
T Consensus 2 ~~L~~L~vs~N~L-t~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQL-TSLPE 19 (26)
T ss_pred cccceeecCCCcc-ccCcc
Confidence 3577888888888 77775
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.1 Score=31.86 Aligned_cols=81 Identities=22% Similarity=0.151 Sum_probs=41.9
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhh-ccCCCCeEEeecee-eccCCcHHHhcccCCCEE
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEIS-SFIKLEDIGLSINR-FISSIPESLGKLLKLHYL 93 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~~l~~l 93 (116)
.++.++-++..+...--..+..++.++.+.+.++.-.+ ..-+.++ -.++|+.|++++|. ++..--..+..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35566666666544444556666666666666654321 1111121 24567777777653 222212335566666666
Q ss_pred eccc
Q 035618 94 DLSK 97 (116)
Q Consensus 94 ~l~~ 97 (116)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.20 E-value=0.0083 Score=37.46 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=58.0
Q ss_pred cCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 37 GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 37 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
........+|++.|++. .+...+.-++.+..++++.|++. .+|..+.....++.++.-.|.+ ...|.+++..+.++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 33456678888888876 45556666778888899988874 6788888888888888888888 77788888887764
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.99 E-value=0.4 Score=19.08 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.4
Q ss_pred cCCCEEecccCcc
Q 035618 88 LKLHYLDLSKNQF 100 (116)
Q Consensus 88 ~~l~~l~l~~n~l 100 (116)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4678888888888
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.28 E-value=0.42 Score=19.17 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=9.0
Q ss_pred cCCCEEecccCcc
Q 035618 88 LKLHYLDLSKNQF 100 (116)
Q Consensus 88 ~~l~~l~l~~n~l 100 (116)
++|+.|++++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3567777777777
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.08 E-value=2.2 Score=28.95 Aligned_cols=88 Identities=23% Similarity=0.094 Sum_probs=44.7
Q ss_pred cCCcccceeecccc-ccccccc----hhhcCCCCCCeEecccCc-ceecCchhhh-ccCCCCeEEeecee-eccC-CcHH
Q 035618 13 GKSSHLHAFDLLFN-HLFVEIP----NDLGKLNSLTKLILKWNQ-FTGRLPPEIS-SFIKLEDIGLSINR-FISS-IPES 83 (116)
Q Consensus 13 ~~l~~L~~l~l~~n-~~~~~~~----~~~~~l~~l~~l~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~n~-~~~~-~~~~ 83 (116)
..++.|+.++++++ ......+ .....+..++.+++.++. +....-..+. .|++|+.+.+..+. ++.. +-..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34566777777652 1111111 122234667777777666 3322222232 26677777765554 2211 1122
Q ss_pred HhcccCCCEEecccCcc
Q 035618 84 LGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l 100 (116)
...++.|+.++++++..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34566788888877665
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.72 E-value=4.2 Score=15.69 Aligned_cols=13 Identities=38% Similarity=0.281 Sum_probs=10.2
Q ss_pred ccCCCEEecccCc
Q 035618 87 LLKLHYLDLSKNQ 99 (116)
Q Consensus 87 ~~~l~~l~l~~n~ 99 (116)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3578889998886
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.78 E-value=15 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=24.8
Q ss_pred ecccCcceecCch-hhhccCCCCeEEeeceeec
Q 035618 46 ILKWNQFTGRLPP-EISSFIKLEDIGLSINRFI 77 (116)
Q Consensus 46 ~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~ 77 (116)
|+++|++. .++. .|..+.+|+.|+|.+|++.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 47788888 6665 5778889999999998763
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.97 E-value=25 Score=30.28 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=17.5
Q ss_pred CccccccCcCccCCcccceeecccccc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHL 28 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~ 28 (116)
|++...-+..|..+++|+.|+|++|.+
T Consensus 5 N~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 5 NKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CcCCccChHHhccCCCceEEEeeCCcc
Confidence 455544555566677777777777754
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.48 E-value=67 Score=23.31 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=28.8
Q ss_pred Ccccceeeccccccccccc---hhhcCCCCCCeEecccCcceecCchhhh--ccCCCCeEEeeceeecc
Q 035618 15 SSHLHAFDLLFNHLFVEIP---NDLGKLNSLTKLILKWNQFTGRLPPEIS--SFIKLEDIGLSINRFIS 78 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~---~~~~~l~~l~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~n~~~~ 78 (116)
.+.+..+.+++|++ ..+. .--..-+.+..|++++|........++. ....|+.+.+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34555566666665 2111 1112245667777777622111111111 12235666666666543
Done!