Query 035618
Match_columns 116
No_of_seqs 117 out of 2897
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 07:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-19 6.3E-24 113.4 9.2 114 2-115 60-177 (313)
2 3rgz_A Protein brassinosteroid 99.8 3.7E-19 1.3E-23 123.0 10.0 98 8-105 624-721 (768)
3 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-19 1.8E-23 111.4 8.2 111 2-112 87-198 (313)
4 4fcg_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 110.1 8.1 108 7-115 197-304 (328)
5 3rgz_A Protein brassinosteroid 99.8 2.7E-18 9.2E-23 118.7 9.7 111 4-114 430-540 (768)
6 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.8E-23 103.5 8.5 113 2-115 42-155 (220)
7 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.5E-23 103.3 8.1 114 2-115 42-156 (220)
8 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.7E-22 95.0 8.2 112 2-115 27-143 (149)
9 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.3E-22 100.6 9.0 113 2-115 50-162 (229)
10 3m19_A Variable lymphocyte rec 99.7 1.5E-17 5.1E-22 101.7 8.8 98 3-100 46-143 (251)
11 4fcg_A Uncharacterized protein 99.7 5.9E-18 2E-22 107.2 7.0 99 15-115 182-280 (328)
12 3m19_A Variable lymphocyte rec 99.7 2.1E-17 7.2E-22 101.1 8.8 115 1-115 68-182 (251)
13 2o6s_A Variable lymphocyte rec 99.7 5.1E-17 1.8E-21 96.8 8.8 114 2-115 38-151 (208)
14 4eco_A Uncharacterized protein 99.7 1.2E-17 4E-22 113.7 6.7 107 8-115 198-333 (636)
15 3rfs_A Internalin B, repeat mo 99.7 4.6E-17 1.6E-21 100.6 8.8 114 2-115 95-208 (272)
16 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.7E-22 97.5 6.9 92 12-103 50-141 (192)
17 2ell_A Acidic leucine-rich nuc 99.7 7.1E-17 2.4E-21 93.3 8.9 112 2-115 34-150 (168)
18 4eco_A Uncharacterized protein 99.7 7.5E-18 2.6E-22 114.6 5.4 106 8-115 239-356 (636)
19 3v47_A TOLL-like receptor 5B a 99.7 4.1E-17 1.4E-21 106.7 8.1 114 2-115 285-398 (455)
20 4g8a_A TOLL-like receptor 4; l 99.7 5.1E-17 1.7E-21 109.5 8.6 114 2-115 62-176 (635)
21 1w8a_A SLIT protein; signaling 99.7 6.6E-17 2.2E-21 95.5 7.7 109 5-115 20-129 (192)
22 3vq2_A TLR4, TOLL-like recepto 99.7 6.2E-17 2.1E-21 109.1 8.0 114 2-115 42-156 (606)
23 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.2E-21 99.1 8.7 110 6-115 119-228 (285)
24 2wfh_A SLIT homolog 2 protein 99.7 1.7E-16 5.8E-21 93.8 8.8 108 5-115 22-129 (193)
25 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-16 8.7E-21 94.7 8.6 104 2-105 67-170 (220)
26 2v9t_B SLIT homolog 2 protein 99.7 2.2E-16 7.6E-21 95.0 8.2 109 5-115 23-131 (220)
27 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.7E-21 97.6 8.2 103 11-113 71-174 (276)
28 3e6j_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 94.6 8.9 107 5-115 31-138 (229)
29 4ecn_A Leucine-rich repeat pro 99.7 3.9E-17 1.3E-21 114.2 5.3 112 2-115 435-576 (876)
30 4ecn_A Leucine-rich repeat pro 99.7 7E-17 2.4E-21 113.0 6.2 112 1-112 332-541 (876)
31 1ozn_A Reticulon 4 receptor; N 99.7 2.7E-16 9.1E-21 97.6 8.2 106 9-114 73-179 (285)
32 2o6q_A Variable lymphocyte rec 99.7 4.7E-16 1.6E-20 96.0 8.9 98 3-100 48-145 (270)
33 3vq2_A TLR4, TOLL-like recepto 99.7 2.8E-16 9.6E-21 106.0 8.0 114 1-114 65-179 (606)
34 2z62_A TOLL-like receptor 4, v 99.7 6.7E-16 2.3E-20 95.4 9.0 114 2-115 38-152 (276)
35 2z66_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 98.3 7.3 110 2-111 136-246 (306)
36 3rfs_A Internalin B, repeat mo 99.7 6.2E-16 2.1E-20 95.6 8.5 105 11-115 80-184 (272)
37 2o6q_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 95.0 8.8 101 13-114 106-207 (270)
38 3v47_A TOLL-like receptor 5B a 99.7 3.1E-16 1.1E-20 102.6 7.3 114 2-115 40-157 (455)
39 2id5_A Lingo-1, leucine rich r 99.6 2.3E-16 8E-21 103.9 6.6 112 2-114 42-154 (477)
40 1dce_A Protein (RAB geranylger 99.6 1.6E-15 5.6E-20 102.1 10.2 109 2-115 451-563 (567)
41 4b8c_D Glucose-repressible alc 99.6 3.9E-16 1.3E-20 107.6 7.2 99 7-108 238-336 (727)
42 2xot_A Amphoterin-induced prot 99.6 7.9E-16 2.7E-20 98.5 8.2 98 3-100 50-148 (361)
43 4b8c_D Glucose-repressible alc 99.6 3.6E-16 1.2E-20 107.8 7.0 106 7-116 215-320 (727)
44 2z63_A TOLL-like receptor 4, v 99.6 7.2E-16 2.5E-20 103.1 8.2 112 3-114 39-151 (570)
45 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-15 4.9E-20 102.5 9.5 114 1-114 85-199 (635)
46 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.4E-20 88.3 8.5 97 9-105 45-141 (177)
47 2r9u_A Variable lymphocyte rec 99.6 2.5E-15 8.5E-20 87.5 9.1 97 4-103 23-120 (174)
48 2o6r_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 87.7 8.7 108 6-115 20-127 (177)
49 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.4E-20 94.0 8.9 108 6-114 90-197 (290)
50 4ezg_A Putative uncharacterize 99.6 2E-15 7E-20 89.3 8.3 101 11-114 83-183 (197)
51 2id5_A Lingo-1, leucine rich r 99.6 1.1E-15 3.8E-20 100.7 7.7 114 2-115 66-179 (477)
52 1p9a_G Platelet glycoprotein I 99.6 8.8E-16 3E-20 95.8 6.7 98 16-114 77-174 (290)
53 3t6q_A CD180 antigen; protein- 99.6 2.5E-15 8.5E-20 101.4 9.3 113 2-115 435-550 (606)
54 2z81_A CD282 antigen, TOLL-lik 99.6 4.4E-16 1.5E-20 103.9 5.6 98 2-99 36-134 (549)
55 2z66_A Variable lymphocyte rec 99.6 9.1E-16 3.1E-20 96.0 6.7 105 11-115 121-226 (306)
56 3g39_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 86.2 9.0 98 5-104 21-118 (170)
57 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1E-19 88.4 8.3 99 5-103 43-141 (193)
58 1ziw_A TOLL-like receptor 3; i 99.6 8.6E-16 2.9E-20 104.8 6.7 113 2-115 35-148 (680)
59 3j0a_A TOLL-like receptor 5; m 99.6 1.3E-15 4.4E-20 106.4 7.7 102 10-111 67-171 (844)
60 4ezg_A Putative uncharacterize 99.6 3.7E-15 1.3E-19 88.2 8.6 105 7-115 58-162 (197)
61 3oja_B Anopheles plasmodium-re 99.6 8.7E-16 3E-20 103.8 6.3 104 12-115 71-174 (597)
62 3t6q_A CD180 antigen; protein- 99.6 1.1E-15 3.8E-20 103.0 6.8 99 2-100 43-141 (606)
63 2z63_A TOLL-like receptor 4, v 99.6 3.8E-15 1.3E-19 99.7 8.9 112 2-114 62-175 (570)
64 2o6s_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 87.6 8.9 104 2-105 62-165 (208)
65 2z7x_B TOLL-like receptor 1, v 99.6 2.8E-15 9.7E-20 99.6 7.9 104 7-115 14-118 (520)
66 2xot_A Amphoterin-induced prot 99.6 6.4E-15 2.2E-19 94.3 9.1 111 2-112 74-187 (361)
67 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 84.4 7.2 99 15-115 16-116 (149)
68 2z81_A CD282 antigen, TOLL-lik 99.6 3.6E-15 1.2E-19 99.6 7.8 109 5-115 17-126 (549)
69 3o6n_A APL1; leucine-rich repe 99.6 1.8E-15 6.2E-20 97.5 6.1 103 12-114 65-167 (390)
70 3j0a_A TOLL-like receptor 5; m 99.6 9E-15 3.1E-19 102.2 9.4 115 1-115 33-151 (844)
71 1xku_A Decorin; proteoglycan, 99.6 1.1E-14 3.8E-19 92.0 9.0 111 2-115 62-174 (330)
72 2z80_A TOLL-like receptor 2, v 99.6 1.2E-15 4.3E-20 97.2 4.5 94 3-98 63-159 (353)
73 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-14 4.1E-19 84.6 8.3 107 2-115 29-143 (176)
74 2xwt_C Thyrotropin receptor; s 99.6 4.8E-15 1.6E-19 89.9 6.7 112 2-115 41-158 (239)
75 2z7x_B TOLL-like receptor 1, v 99.6 5.4E-15 1.8E-19 98.2 7.2 110 2-114 334-446 (520)
76 2ell_A Acidic leucine-rich nuc 99.6 1.3E-14 4.3E-19 83.8 7.5 101 2-106 59-164 (168)
77 2z80_A TOLL-like receptor 2, v 99.6 4E-15 1.4E-19 94.8 5.6 84 17-100 53-136 (353)
78 3zyi_A Leucine-rich repeat-con 99.6 9.1E-15 3.1E-19 95.9 7.4 96 2-97 85-180 (452)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.4E-14 4.8E-19 97.2 8.3 97 16-115 52-149 (562)
80 2ft3_A Biglycan; proteoglycan, 99.6 2.7E-14 9.3E-19 90.3 9.1 113 2-115 203-323 (332)
81 3oja_B Anopheles plasmodium-re 99.6 1.4E-14 4.7E-19 98.0 8.2 102 1-103 84-186 (597)
82 3zyj_A Leucine-rich repeat-con 99.6 1.3E-14 4.6E-19 94.8 7.8 96 2-97 74-169 (440)
83 1wwl_A Monocyte differentiatio 99.6 2.9E-15 9.8E-20 94.2 4.4 98 2-100 105-213 (312)
84 1wwl_A Monocyte differentiatio 99.6 2.3E-15 7.8E-20 94.7 3.7 101 14-115 93-204 (312)
85 3zyi_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 94.2 7.8 108 6-115 67-174 (452)
86 1xku_A Decorin; proteoglycan, 99.5 3E-14 1E-18 90.0 8.0 102 9-114 164-265 (330)
87 3oja_A Leucine-rich immune mol 99.5 1.1E-14 3.9E-19 96.5 6.1 110 2-115 130-240 (487)
88 2ft3_A Biglycan; proteoglycan, 99.5 3.8E-14 1.3E-18 89.7 8.1 96 2-100 64-159 (332)
89 3o6n_A APL1; leucine-rich repe 99.5 3.6E-14 1.2E-18 91.5 8.1 101 2-103 79-180 (390)
90 1ziw_A TOLL-like receptor 3; i 99.5 1.4E-14 4.8E-19 98.9 6.5 107 2-108 59-165 (680)
91 1dce_A Protein (RAB geranylger 99.5 3.7E-14 1.3E-18 95.6 8.2 94 17-115 442-536 (567)
92 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4.1E-20 90.4 0.8 99 11-115 43-143 (198)
93 3g39_A Variable lymphocyte rec 99.5 2.9E-14 1E-18 82.7 6.5 96 17-115 10-105 (170)
94 3zyj_A Leucine-rich repeat-con 99.5 5.1E-14 1.7E-18 92.1 8.3 108 6-115 56-163 (440)
95 2ifg_A High affinity nerve gro 99.5 7.8E-14 2.7E-18 88.7 8.6 97 5-103 21-118 (347)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.1E-14 1.4E-18 95.0 7.4 99 1-102 61-160 (562)
97 2r9u_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 82.1 6.4 95 18-115 14-108 (174)
98 3o53_A Protein LRIM1, AGAP0063 99.5 3.4E-14 1.1E-18 89.5 6.1 110 2-115 130-240 (317)
99 4fmz_A Internalin; leucine ric 99.5 3.3E-13 1.1E-17 85.7 9.5 98 12-115 239-336 (347)
100 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4E-18 80.4 6.6 100 11-115 14-116 (176)
101 1h6t_A Internalin B; cell adhe 99.5 5.2E-13 1.8E-17 83.3 9.5 83 12-100 86-168 (291)
102 3oja_A Leucine-rich immune mol 99.5 5.2E-14 1.8E-18 93.3 5.2 111 2-115 44-172 (487)
103 2xwt_C Thyrotropin receptor; s 99.5 5.1E-14 1.7E-18 85.4 4.3 91 8-100 72-168 (239)
104 4glp_A Monocyte differentiatio 99.5 9.6E-14 3.3E-18 87.2 5.4 75 2-76 101-181 (310)
105 1ds9_A Outer arm dynein; leuci 99.4 3.9E-15 1.3E-19 88.1 -1.3 104 8-115 63-177 (198)
106 3o53_A Protein LRIM1, AGAP0063 99.4 5E-14 1.7E-18 88.7 3.6 109 2-114 154-264 (317)
107 2ast_B S-phase kinase-associat 99.4 8E-14 2.7E-18 88.1 4.3 104 12-115 89-198 (336)
108 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.6E-17 82.5 9.4 17 12-28 59-75 (308)
109 4glp_A Monocyte differentiatio 99.4 6.9E-14 2.3E-18 87.8 3.9 26 3-28 156-181 (310)
110 1h6t_A Internalin B; cell adhe 99.4 1.5E-12 5.2E-17 81.2 9.6 97 11-115 107-203 (291)
111 4fmz_A Internalin; leucine ric 99.4 1.8E-12 6.1E-17 82.3 9.4 98 12-115 217-314 (347)
112 1xeu_A Internalin C; cellular 99.4 1.7E-12 5.7E-17 80.0 9.0 96 11-115 58-153 (263)
113 3goz_A Leucine-rich repeat-con 99.4 4.6E-13 1.6E-17 85.7 6.3 107 2-108 8-129 (362)
114 1h6u_A Internalin H; cell adhe 99.4 2E-12 6.8E-17 81.2 9.1 83 12-100 125-207 (308)
115 2ast_B S-phase kinase-associat 99.4 7E-14 2.4E-18 88.3 2.4 104 11-114 137-249 (336)
116 1m9s_A Internalin B; cell inva 99.4 1.8E-12 6.1E-17 88.0 9.2 60 37-100 128-187 (605)
117 1xeu_A Internalin C; cellular 99.4 2.1E-12 7.2E-17 79.5 7.9 103 2-115 73-175 (263)
118 1m9s_A Internalin B; cell inva 99.4 5.4E-12 1.8E-16 85.7 9.6 104 2-115 75-178 (605)
119 1o6v_A Internalin A; bacterial 99.4 4.1E-12 1.4E-16 83.7 8.8 95 12-114 283-377 (466)
120 2ifg_A High affinity nerve gro 99.3 1.9E-12 6.5E-17 82.3 6.3 89 20-110 12-102 (347)
121 1o6v_A Internalin A; bacterial 99.3 1.7E-11 6E-16 80.7 9.3 96 12-115 261-356 (466)
122 2ca6_A RAN GTPase-activating p 99.3 7.7E-13 2.6E-17 85.2 2.6 91 12-102 183-288 (386)
123 3cvr_A Invasion plasmid antige 99.3 5.8E-12 2E-16 85.0 6.1 90 15-113 159-255 (571)
124 3goz_A Leucine-rich repeat-con 99.3 3.8E-12 1.3E-16 81.5 4.8 92 10-101 44-151 (362)
125 2ca6_A RAN GTPase-activating p 99.3 2E-12 7E-17 83.2 2.7 39 14-52 92-134 (386)
126 3bz5_A Internalin-J, INLJ; leu 99.2 2.5E-11 8.4E-16 80.0 7.7 83 11-102 59-141 (457)
127 3bz5_A Internalin-J, INLJ; leu 99.2 1.7E-11 5.9E-16 80.8 5.8 97 8-115 34-130 (457)
128 3cvr_A Invasion plasmid antige 99.2 2.2E-11 7.4E-16 82.3 6.2 89 14-115 138-233 (571)
129 1z7x_W Ribonuclease inhibitor; 99.2 1.9E-12 6.7E-17 84.7 0.6 104 12-115 280-401 (461)
130 3g06_A SSPH2 (leucine-rich rep 99.2 9.1E-11 3.1E-15 80.0 8.1 89 16-113 221-309 (622)
131 4ay9_X Follicle-stimulating ho 99.2 2.9E-11 9.9E-16 77.1 4.7 97 5-103 21-119 (350)
132 1jl5_A Outer protein YOPM; leu 99.1 1.1E-10 3.9E-15 76.8 6.3 94 8-114 146-239 (454)
133 1jl5_A Outer protein YOPM; leu 99.1 7E-11 2.4E-15 77.8 5.0 88 16-111 317-421 (454)
134 1z7x_W Ribonuclease inhibitor; 99.1 5.3E-11 1.8E-15 78.0 2.5 108 8-115 105-230 (461)
135 3g06_A SSPH2 (leucine-rich rep 99.0 6.7E-10 2.3E-14 75.8 7.6 67 40-115 221-287 (622)
136 4ay9_X Follicle-stimulating ho 99.0 1.3E-09 4.3E-14 69.5 6.4 78 2-79 40-119 (350)
137 3sb4_A Hypothetical leucine ri 98.9 2.3E-09 7.8E-14 67.8 5.4 99 15-115 225-324 (329)
138 3rw6_A Nuclear RNA export fact 98.8 3.1E-09 1.1E-13 65.6 3.9 77 37-115 167-254 (267)
139 3un9_A NLR family member X1; l 98.8 1.7E-09 5.8E-14 69.7 2.2 95 15-109 154-260 (372)
140 3rw6_A Nuclear RNA export fact 98.8 1.3E-08 4.6E-13 62.8 5.6 79 14-94 168-257 (267)
141 3un9_A NLR family member X1; l 98.7 1.3E-09 4.5E-14 70.2 0.6 88 15-102 125-225 (372)
142 3ogk_B Coronatine-insensitive 98.7 2.8E-09 9.4E-14 71.8 1.2 76 39-115 163-246 (592)
143 3ogk_B Coronatine-insensitive 98.6 1.4E-08 4.7E-13 68.4 3.3 35 81-115 286-321 (592)
144 1io0_A Tropomodulin; LRR prote 98.5 7.3E-08 2.5E-12 56.4 3.9 91 12-102 32-137 (185)
145 3e4g_A ATP synthase subunit S, 98.5 1E-07 3.4E-12 55.4 4.2 96 8-103 53-154 (176)
146 2p1m_B Transport inhibitor res 98.5 5.4E-08 1.9E-12 65.5 3.4 36 15-50 104-140 (594)
147 2p1m_B Transport inhibitor res 98.5 4.7E-08 1.6E-12 65.8 1.7 88 13-101 429-519 (594)
148 3sb4_A Hypothetical leucine ri 98.4 4.9E-07 1.7E-11 57.1 6.0 91 3-95 237-328 (329)
149 1io0_A Tropomodulin; LRR prote 98.4 2.4E-07 8.1E-12 54.2 3.2 91 10-100 59-163 (185)
150 4fdw_A Leucine rich hypothetic 98.1 9.7E-06 3.3E-10 52.8 6.1 103 6-111 261-368 (401)
151 2ra8_A Uncharacterized protein 97.9 1.2E-05 4E-10 51.8 4.7 40 63-102 251-293 (362)
152 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.6E-10 46.9 2.9 76 40-115 61-142 (176)
153 4fdw_A Leucine rich hypothetic 97.8 5.3E-05 1.8E-09 49.3 6.5 106 8-115 172-303 (401)
154 2ra8_A Uncharacterized protein 97.7 2.7E-05 9.2E-10 50.1 3.7 96 14-109 217-328 (362)
155 4h09_A Hypothetical leucine ri 97.4 0.00083 2.8E-08 43.1 7.5 35 38-72 284-318 (379)
156 4gt6_A Cell surface protein; l 97.4 0.0012 4.2E-08 42.6 7.7 63 35-99 306-368 (394)
157 4fs7_A Uncharacterized protein 97.0 0.0011 3.7E-08 42.9 4.8 98 12-114 293-390 (394)
158 4gt6_A Cell surface protein; l 97.0 0.0061 2.1E-07 39.4 8.1 102 9-115 258-360 (394)
159 3rfe_A Platelet glycoprotein I 97.0 0.0018 6E-08 35.7 4.8 35 41-76 32-67 (130)
160 4h09_A Hypothetical leucine ri 97.0 0.003 1E-07 40.5 6.4 104 9-115 233-336 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0011 3.6E-08 39.3 3.9 85 14-98 39-136 (197)
162 3rfe_A Platelet glycoprotein I 96.9 0.0018 6.3E-08 35.6 4.6 45 7-53 24-68 (130)
163 4fs7_A Uncharacterized protein 96.6 0.0073 2.5E-07 39.0 6.3 78 35-115 292-369 (394)
164 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0087 3E-07 35.4 3.3 90 11-100 65-169 (197)
165 2lz0_A Uncharacterized protein 45.8 30 0.001 17.7 3.9 37 11-48 15-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.8e-19 Score=113.41 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=87.6
Q ss_pred Ccccc--ccCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc
Q 035618 2 NNSTG--DIPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS 78 (116)
Q Consensus 2 n~~~~--~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 78 (116)
|.+.+ .+|..+..+++|+.|++++ |.+.+.+|..+..+++|+++++++|.+.+.+|..+..+++|+++++++|.+.+
T Consensus 60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 139 (313)
T 1ogq_A 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139 (313)
T ss_dssp CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC
Confidence 45555 6777788888888888884 77767777778788888888888888877777777778888888888888777
Q ss_pred CCcHHHhcccCCCEEecccCccccccchHHhhhc-CCC
Q 035618 79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVV-QLS 115 (116)
Q Consensus 79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~-~L~ 115 (116)
.+|..+..+++|+++++++|.+++.+|..++.++ .|+
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 7777777788888888888888767777777766 544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=3.7e-19 Score=123.02 Aligned_cols=98 Identities=27% Similarity=0.429 Sum_probs=48.4
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
.|..+..+++|+.|++++|.+++.+|..+..++.|+.+++++|.+.+.+|..++.+++|+.|++++|+++|.+|..+..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 33344444444445555554444444444445555555555555544445545455555555555555544455444455
Q ss_pred cCCCEEecccCccccccc
Q 035618 88 LKLHYLDLSKNQFFQELP 105 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p 105 (116)
++|+.+++++|.++|.+|
T Consensus 704 ~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCCSEEECCSSEEEEECC
T ss_pred CCCCEEECcCCcccccCC
Confidence 555555555555544444
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=5.1e-19 Score=111.37 Aligned_cols=111 Identities=30% Similarity=0.503 Sum_probs=85.3
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+.+|..+..+++|++|++++|.+++..|..+..+++|+++++++|.+.+.+|..+..+++|+.+++++|.+.+.+|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 56666777778888888888888888866777777788888888888888877777777778888888888887777777
Q ss_pred HHHhccc-CCCEEecccCccccccchHHhhhc
Q 035618 82 ESLGKLL-KLHYLDLSKNQFFQELPKELEKVV 112 (116)
Q Consensus 82 ~~~~~~~-~l~~l~l~~n~l~~~~p~~~~~l~ 112 (116)
..+..+. .|+.+++++|.+.+.+|..+..++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 7777776 777777777777667776666554
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=1.4e-18 Score=110.08 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=85.8
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+|..+..+++|+.|++++|.+. .+|+.+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 56667777778888888888774 46666777888888888887777777777888888888888888777788878888
Q ss_pred ccCCCEEecccCccccccchHHhhhcCCC
Q 035618 87 LLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+++|+.+++++|.+.+.+|..++.++.|+
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 88888888888888888888888887764
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=2.7e-18 Score=118.74 Aligned_cols=111 Identities=38% Similarity=0.587 Sum_probs=53.3
Q ss_pred cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618 4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES 83 (116)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (116)
+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|++.+.+|..
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 33344444444444444444444444444444444444444444444444444444444555555555555544444544
Q ss_pred HhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+..+++|+.+++++|.+++.+|..++.+++|
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 5555555555555555544555544444444
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.6e-18 Score=103.46 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=92.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.+++++|.+. .+|. .+..+++|+.|++++|.+.+..
T Consensus 42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 5555555667888899999999999987777888888999999999999998 5665 4678899999999999988777
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+..|..+++|+.|++++|.+++..+..+..+++|+
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 78888899999999999999666666677777665
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=103.31 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=91.1
Q ss_pred CccccccC-cCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIP-CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 44444434 34678889999999999886666667888899999999999988555556888889999999999888777
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|..+..+++|+.|++++|.+++..|..|..+++|+
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 77888888999999999999777788888877765
No 8
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=1.1e-17 Score=95.05 Aligned_cols=112 Identities=26% Similarity=0.214 Sum_probs=94.1
Q ss_pred Cccc-cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC-
Q 035618 2 NNST-GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS- 79 (116)
Q Consensus 2 n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~- 79 (116)
|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+.+.
T Consensus 27 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence 5555 57888889999999999999998655 6788899999999999999966888888899999999999998652
Q ss_pred CcHHHhcccCCCEEecccCccccccc---hHHhhhcCCC
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQELP---KELEKVVQLS 115 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~~~p---~~~~~l~~L~ 115 (116)
.+..+..+++|+.+++++|.+++..+ ..++.+++|+
T Consensus 105 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 23678899999999999999966544 4688888876
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.6e-17 Score=100.57 Aligned_cols=113 Identities=22% Similarity=0.216 Sum_probs=82.5
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++. .+|
T Consensus 50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 5666666777788888888888888884444445677888888888888887433345677888888888888875 677
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 7778888888888888888554445566666664
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=1.5e-17 Score=101.75 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=45.2
Q ss_pred ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE 82 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 82 (116)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 46 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 125 (251)
T 3m19_A 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh
Confidence 33344444455555555555555555444444444455555555555555422223344444444444444444332222
Q ss_pred HHhcccCCCEEecccCcc
Q 035618 83 SLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l 100 (116)
.+..+++|+.|++++|.+
T Consensus 126 ~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HhccCCcccEEECcCCcC
Confidence 334444444444444444
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=5.9e-18 Score=107.20 Aligned_cols=99 Identities=22% Similarity=0.364 Sum_probs=63.8
Q ss_pred CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEe
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLD 94 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 94 (116)
+++|+.|++++|.++ .+|..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 566666666666653 55555666666666666666666 4555666666666666666666666666666666677777
Q ss_pred cccCccccccchHHhhhcCCC
Q 035618 95 LSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 95 l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+++|.+.+.+|..++.+++|+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCC
T ss_pred CCCCCchhhcchhhhcCCCCC
Confidence 776666666666666666654
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=2.1e-17 Score=101.06 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 35666667777888999999999999997666667788999999999999998433445778899999999999987655
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+..+..+++|+.|++++|.+++..+..+..++.|+
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 55788889999999999999666666777777765
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.1e-17 Score=96.80 Aligned_cols=114 Identities=23% Similarity=0.162 Sum_probs=80.1
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 45554445556778888888888888855444456678888888888888874333446778888888888888765555
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus 118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 5577788888888888888554444566666664
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=1.2e-17 Score=113.65 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=61.6
Q ss_pred cCcCccCCcccceeeccccccccc-----------------cchhhc--CCCCCCeEecccCcceecCchhhhccCCCCe
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVE-----------------IPNDLG--KLNSLTKLILKWNQFTGRLPPEISSFIKLED 68 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 68 (116)
+|..+.++++|+.|++++|.+++. +|..+. .+++|+++++++|.+.+.+|..+..+++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 555555666666666666665443 555555 5666666666666555555655556666666
Q ss_pred EEeecee-ecc-CCcHHHhcc------cCCCEEecccCccccccch--HHhhhcCCC
Q 035618 69 IGLSINR-FIS-SIPESLGKL------LKLHYLDLSKNQFFQELPK--ELEKVVQLS 115 (116)
Q Consensus 69 l~l~~n~-~~~-~~~~~~~~~------~~l~~l~l~~n~l~~~~p~--~~~~l~~L~ 115 (116)
|++++|+ +.+ .+|..+..+ ++|+.+++++|.++ .+|. .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 6666665 554 455555544 55666666666663 5555 555555543
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.6e-17 Score=100.62 Aligned_cols=114 Identities=24% Similarity=0.198 Sum_probs=71.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 44444444456666777777777777654444445667777777777777663333345667777777777777665544
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 5566677777777777777555555556666554
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.3e-17 Score=97.46 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=48.5
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44555555555555555444445555555555555555555543344455555555555555555544444555555555
Q ss_pred EEecccCccccc
Q 035618 92 YLDLSKNQFFQE 103 (116)
Q Consensus 92 ~l~l~~n~l~~~ 103 (116)
.+++++|.+.+.
T Consensus 130 ~L~L~~N~l~c~ 141 (192)
T 1w8a_A 130 SLNLASNPFNCN 141 (192)
T ss_dssp EEECTTCCBCCS
T ss_pred EEEeCCCCccCc
Confidence 555555555444
No 17
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=7.1e-17 Score=93.31 Aligned_cols=112 Identities=27% Similarity=0.217 Sum_probs=92.2
Q ss_pred Cccc-cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNST-GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..
T Consensus 34 n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSG
T ss_pred CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcch
Confidence 4554 57888889999999999999998554 67888999999999999998667878888999999999999986532
Q ss_pred -cHHHhcccCCCEEecccCccccccc---hHHhhhcCCC
Q 035618 81 -PESLGKLLKLHYLDLSKNQFFQELP---KELEKVVQLS 115 (116)
Q Consensus 81 -~~~~~~~~~l~~l~l~~n~l~~~~p---~~~~~l~~L~ 115 (116)
+..+..+++|+.+++++|.+++..+ ..+..+++|+
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 2678899999999999999955444 3788888775
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=7.5e-18 Score=114.57 Aligned_cols=106 Identities=21% Similarity=0.297 Sum_probs=97.6
Q ss_pred cCcCcc--CCcccceeeccccccccccchhhcCCCCCCeEecccCc-cee-cCchhhhcc------CCCCeEEeeceeec
Q 035618 8 IPCEIG--KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQ-FTG-RLPPEISSF------IKLEDIGLSINRFI 77 (116)
Q Consensus 8 ~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~n~~~ 77 (116)
+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.+++++|. +.+ .+|..++.+ ++|+.+++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899999 99999999999999989999999999999999999998 887 789988776 89999999999997
Q ss_pred cCCcH--HHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 78 SSIPE--SLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 78 ~~~~~--~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+|. .+..+++|+.+++++|.+.+.+| .++.+++|+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888 89999999999999999987999 788777665
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=4.1e-17 Score=106.75 Aligned_cols=114 Identities=21% Similarity=0.121 Sum_probs=82.0
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 45555566677777888888888888766666677777788888888887775556677777778888888877766666
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 6777777788888888877554444556666654
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=5.1e-17 Score=109.50 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=72.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..|.++++|++|++++|.+.+..+..|..+++|+++++++|++.+..+..|..+++|+.|++++|++.+..+
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 45555555567777777777777777755445556677777777777777763333456667777777777776654434
Q ss_pred HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
..|..+++|+.|++++|.+.+ .+|..++.++.|+
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 456666777777777776643 3455566665554
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=6.6e-17 Score=95.47 Aligned_cols=109 Identities=28% Similarity=0.298 Sum_probs=94.1
Q ss_pred ccccCcCccCCcccceeeccccccccccch-hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPN-DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES 83 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (116)
.+.+|..+.. .++.|++++|.+.+..+. .+..+++|+.+++++|.+.+..|..+..+++|+.|++++|++.+..+..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 3567776654 899999999999555443 3888999999999999999777889999999999999999998877777
Q ss_pred HhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 89999999999999999888888888888775
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=6.2e-17 Score=109.12 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=64.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+.++++|+.|++++|.+.+..|..|..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 34444444456666666666666666655445555666666666666666654445556666666666666665544333
Q ss_pred HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
..+..+++|+++++++|.+.+ .+|..++++++|+
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 445555556666666665543 3455555555544
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.2e-16 Score=99.13 Aligned_cols=110 Identities=21% Similarity=0.148 Sum_probs=54.9
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..|..+.
T Consensus 119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 33344444455555555555554333333344455555555555555422222344555555555555555544455555
Q ss_pred cccCCCEEecccCccccccchHHhhhcCCC
Q 035618 86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++|+.+++++|.+++..+..+..+++|+
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 555666666666666444334455555443
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=93.83 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=75.3
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
...+|..+. +.++.|++++|.+ ..+|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..|
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 345555443 4677888888877 4666777777888888888888774444567777788888888887776666667
Q ss_pred hcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 85 GKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+++|+.|++++|.+++..+..|..+++|+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 7777888888888887544444566666654
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=94.74 Aligned_cols=104 Identities=21% Similarity=0.133 Sum_probs=92.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|++.+..|
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 56666677789999999999999999977777778899999999999999997668889999999999999999988778
Q ss_pred HHHhcccCCCEEecccCccccccc
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELP 105 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p 105 (116)
..+..+++|+.+++++|.+....+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHhcCCCCCCEEEecCcCCcCCCc
Confidence 889999999999999999976544
No 26
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.2e-16 Score=95.01 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=93.2
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
...+|..+. +.++.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+....+..|
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 345666554 689999999999976666688899999999999999997778899999999999999999975544567
Q ss_pred hcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 85 GKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+++|+.|++++|.+.+..|..|..+++|+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 8999999999999999877788888888775
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.2e-16 Score=97.57 Aligned_cols=103 Identities=24% Similarity=0.232 Sum_probs=46.7
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CCcHHHhcccC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SIPESLGKLLK 89 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~ 89 (116)
.+..+++|+.|++++|.+.+..+..+..+++|+.+++.+|.+.+..+..+..+++|+.+++++|.+.+ .+|..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 33444444444444444433333334444444444444444442222234444555555555555443 23455555555
Q ss_pred CCEEecccCccccccchHHhhhcC
Q 035618 90 LHYLDLSKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 90 l~~l~l~~n~l~~~~p~~~~~l~~ 113 (116)
|+.+++++|.+++..+..+..++.
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHT
T ss_pred CCEEECCCCCCCcCCHHHhhhhhh
Confidence 555555555554443444444443
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=3.5e-16 Score=94.62 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=92.2
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPES 83 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (116)
.+.+|..+. ++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .++ ..+..+++|+.|++++|.+.+..+..
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 455666554 78999999999998877888999999999999999998 555 45789999999999999998666666
Q ss_pred HhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 84 LGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+..+++|+.|++++|.+ ..+|..+..+++|+
T Consensus 108 ~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKL-TELPRGIERLTHLT 138 (229)
T ss_dssp TTTCTTCCEEECCSSCC-CSCCTTGGGCTTCS
T ss_pred hCcchhhCeEeccCCcc-cccCcccccCCCCC
Confidence 88999999999999999 58898888888775
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.9e-17 Score=114.21 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=90.0
Q ss_pred CccccccCcCccCCcccceeecccccccc-----------------ccchhhc--CCCCCCeEecccCcceecCchhhhc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV-----------------EIPNDLG--KLNSLTKLILKWNQFTGRLPPEISS 62 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~-----------------~~~~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~ 62 (116)
|++.+ +|..+.++++|+.|++++|.+++ .+|+.+. .+++|+.+++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44555 78888888888888888888866 3777766 8888888888888887788888888
Q ss_pred cCCCCeEEeecee-ecc-CCcHHHhccc-------CCCEEecccCccccccch--HHhhhcCCC
Q 035618 63 FIKLEDIGLSINR-FIS-SIPESLGKLL-------KLHYLDLSKNQFFQELPK--ELEKVVQLS 115 (116)
Q Consensus 63 ~~~L~~l~l~~n~-~~~-~~~~~~~~~~-------~l~~l~l~~n~l~~~~p~--~~~~l~~L~ 115 (116)
+++|+.|++++|+ +.+ .+|..+..+. +|+.|++++|.+. .+|. .++.+++|+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 8888888888887 776 6787777665 8888888888885 7787 788777765
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=7e-17 Score=112.96 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=98.7
Q ss_pred CCccccccCcCccCCcccceeec-cccccccc------------------------------------------------
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDL-LFNHLFVE------------------------------------------------ 31 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l-~~n~~~~~------------------------------------------------ 31 (116)
+|++.|.+|..++.+++|+.|++ +.|.+++.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 36788899999999999999999 66644332
Q ss_pred ----------------------------cchhhcCCCCCCeEecccCccee-----------------cCchhhh--ccC
Q 035618 32 ----------------------------IPNDLGKLNSLTKLILKWNQFTG-----------------RLPPEIS--SFI 64 (116)
Q Consensus 32 ----------------------------~~~~~~~l~~l~~l~l~~~~~~~-----------------~~~~~~~--~~~ 64 (116)
+|..+..+++|+.+++++|.+.+ .+|+.++ .++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 77889999999999999999997 3888877 999
Q ss_pred CCCeEEeeceeeccCCcHHHhcccCCCEEecccCc-ccc-ccchHHhhhc
Q 035618 65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ-FFQ-ELPKELEKVV 112 (116)
Q Consensus 65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~-l~~-~~p~~~~~l~ 112 (116)
+|+.|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..++.++
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence 99999999999999999999999999999999998 877 8999888776
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=2.7e-16 Score=97.64 Aligned_cols=106 Identities=19% Similarity=0.117 Sum_probs=44.3
Q ss_pred CcCccCCcccceeeccccc-cccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 9 PCEIGKSSHLHAFDLLFNH-LFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 9 ~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
+..+..+++|+.|++++|. +....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 3334444444444444443 322223334444444444444444443223334444444444444444433322334444
Q ss_pred cCCCEEecccCccccccchHHhhhcCC
Q 035618 88 LKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
++|+.+++++|.+++..+..+..+++|
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHHHhcCcccc
Confidence 455555555555432222234444433
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.7e-16 Score=95.97 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE 82 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 82 (116)
++.+..+..+..+++|+.|++++|.++...+..+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus 48 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 48 KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence 33333334555566666666666665333223334455566666655555522222344555555555555555443333
Q ss_pred HHhcccCCCEEecccCcc
Q 035618 83 SLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l 100 (116)
.+..+++|+.|++++|.+
T Consensus 128 ~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HhCcCcCCCEEECCCCcC
Confidence 444445555555555554
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=2.8e-16 Score=105.96 Aligned_cols=114 Identities=19% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S 79 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~ 79 (116)
+|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..+..++.+++|+.+++++|.+.+ .
T Consensus 65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 366677778889999999999999999977778899999999999999999985444679999999999999999875 6
Q ss_pred CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+|..+..+++|+++++++|.+++..|..++.++.|
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 78999999999999999999987777777777654
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=6.7e-16 Score=95.43 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=96.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++.+|.+.+..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc
Confidence 55666666688899999999999999976666678889999999999999986666788899999999999999876555
Q ss_pred HHHhcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
..+..+++|+.+++++|.+.+ .+|..+..+++|+
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 568899999999999999965 3688899888876
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=2.9e-16 Score=98.25 Aligned_cols=110 Identities=23% Similarity=0.204 Sum_probs=67.5
Q ss_pred CccccccCcCccCCcccceeecccccccc-ccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV-EIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 34444455556666666666666666644 35555666666666666666666544556666666666777666665544
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhh
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKV 111 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l 111 (116)
+..+..+++|+.+++++|.+.+..|..+..+
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 4456666666777777776666555555555
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=6.2e-16 Score=95.59 Aligned_cols=105 Identities=26% Similarity=0.214 Sum_probs=70.6
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 46667777777777777755444456667777777777777774334446677777777777777765555556677777
Q ss_pred CEEecccCccccccchHHhhhcCCC
Q 035618 91 HYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+.+++++|.+++..+..++.+++|+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCCcCccCHHHhcCCccCC
Confidence 7777777777555555556666654
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.8e-16 Score=95.01 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=45.1
Q ss_pred cCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 13 GKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 13 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
..+++|+.|++++|.+....+..+..+++|+.+++++|.+. .++. .+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 34444444444444443333333444444445555444444 2222 244455555555555554433333344555555
Q ss_pred EEecccCccccccchHHhhhcCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+++++|.+.+..+..+..+++|
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCcCCcCCHHHhccccCC
Confidence 55555555533322334444443
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=3.1e-16 Score=102.60 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=79.1
Q ss_pred CccccccCcCccCCcccceeecccccccccc-chhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 5555556777777788888888877765444 345677777888888877777656677777777777777777776544
Q ss_pred cHH--HhcccCCCEEecccCccccccchH-HhhhcCCC
Q 035618 81 PES--LGKLLKLHYLDLSKNQFFQELPKE-LEKVVQLS 115 (116)
Q Consensus 81 ~~~--~~~~~~l~~l~l~~n~l~~~~p~~-~~~l~~L~ 115 (116)
+.. +..+++|+.|++++|.+.+..|.. +..+++|+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 443 667777777777777776655654 56666654
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=103.86 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=61.0
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|++.+..+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|. .+..+++|+.|++++|.+.+..
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCC
Confidence 3444444555666666666666666665555555666666666666666655 3333 3455556666666665555444
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+..+..+++|+.|++++|.+.+..|..|..+++|
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 4445555555555555555544444444444444
No 40
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.6e-15 Score=102.09 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=91.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC-
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI- 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~- 80 (116)
|.+.+ +|. +..+++|+.|++++|.++ .+|..+..+++|+.+++++|.+. .+| .+..+++|+.|++++|.+.+..
T Consensus 451 n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp SCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred CCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCC
Confidence 44444 676 899999999999999995 88999999999999999999999 477 8889999999999999998776
Q ss_pred cHHHhcccCCCEEecccCccccccch---HHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPK---ELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~---~~~~l~~L~ 115 (116)
|..+..+++|+.|++++|.+++..|. .+..+++|+
T Consensus 526 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 88999999999999999999665442 234466664
No 41
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=3.9e-16 Score=107.64 Aligned_cols=99 Identities=29% Similarity=0.391 Sum_probs=52.9
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+.+|+.|++++|.+. .+|..|..
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN 314 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence 44444445555555555555553 45555555555555555555555 45555555555555555555543 44544555
Q ss_pred ccCCCEEecccCccccccchHH
Q 035618 87 LLKLHYLDLSKNQFFQELPKEL 108 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~ 108 (116)
+++|+.|++++|.+++.+|..+
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCccEEeCCCCccCCCChHHH
Confidence 5555555555555555555444
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=7.9e-16 Score=98.52 Aligned_cols=98 Identities=22% Similarity=0.128 Sum_probs=50.7
Q ss_pred ccccccCcCcc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 3 NSTGDIPCEIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 3 ~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
++.+..+..+. .+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+.+|+.|++++|.+....+
T Consensus 50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence 33333333344 55555566665555544444445555555555555555553333345555555555555555544444
Q ss_pred HHHhcccCCCEEecccCcc
Q 035618 82 ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l 100 (116)
..|..+++|+.|++++|.+
T Consensus 130 ~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp TTTTTCTTCCEEECCSSCC
T ss_pred HHhCCcccCCEEECCCCcC
Confidence 4455555555555555555
No 43
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=3.6e-16 Score=107.78 Aligned_cols=106 Identities=30% Similarity=0.390 Sum_probs=91.8
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
..+..+..++.|+.|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 4567788899999999999999 478888889999999999999999 89999999999999999999987 78999999
Q ss_pred ccCCCEEecccCccccccchHHhhhcCCCC
Q 035618 87 LLKLHYLDLSKNQFFQELPKELEKVVQLSE 116 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~ 116 (116)
+++|+.|++++|.+ +.+|..|+.+++|++
T Consensus 292 l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 292 CFQLKYFYFFDNMV-TTLPWEFGNLCNLQF 320 (727)
T ss_dssp GTTCSEEECCSSCC-CCCCSSTTSCTTCCC
T ss_pred CCCCCEEECCCCCC-CccChhhhcCCCccE
Confidence 99999999999999 688988999988863
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=103.15 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=50.8
Q ss_pred ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcH
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPE 82 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 82 (116)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence 33344444555555555555555555444344455555555555555555433333444444444444444443322111
Q ss_pred HHhcccCCCEEecccCcccc-ccchHHhhhcCC
Q 035618 83 SLGKLLKLHYLDLSKNQFFQ-ELPKELEKVVQL 114 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L 114 (116)
.+..+++|+++++++|.+.+ .+|..++++++|
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cccccccccEEecCCCccceecChhhhcccCCC
Confidence 23344444444444444422 234444444333
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=1.4e-15 Score=102.48 Aligned_cols=114 Identities=22% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S 79 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~ 79 (116)
+|.+.+..+..|.++++|++|++++|++.+..+..|..+++|+++++++|.+.+..+..++.+++|+.|++++|.+.+ .
T Consensus 85 ~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~ 164 (635)
T 4g8a_A 85 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164 (635)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC
Confidence 366666667789999999999999999966656678899999999999999994334468999999999999999865 4
Q ss_pred CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.|..+..+++|+.+++++|.+.+..|..+..+..+
T Consensus 165 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 165 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CchhhccchhhhhhcccCccccccccccccchhhh
Confidence 67888999999999999999988778777776654
No 46
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=88.31 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=51.6
Q ss_pred CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618 9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL 88 (116)
Q Consensus 9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (116)
+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..++
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124 (177)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc
Confidence 33445556666666666665433333345556666666666666532223345556666666666655433333345556
Q ss_pred CCCEEecccCccccccc
Q 035618 89 KLHYLDLSKNQFFQELP 105 (116)
Q Consensus 89 ~l~~l~l~~n~l~~~~p 105 (116)
+|+.+++++|.+.+..|
T Consensus 125 ~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 125 SLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCeeccCc
Confidence 66666666666544433
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.5e-15 Score=87.52 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=82.4
Q ss_pred cccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCCcH
Q 035618 4 STGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSIPE 82 (116)
Q Consensus 4 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~ 82 (116)
..+.+|..+. +.|+.|++++|.+.+..|..+..+++|+.+++++|.+. .+|. .+..+++|+.|++++|++.+..+.
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHH
Confidence 3467777665 78999999999997777888999999999999999999 4665 468899999999999999765555
Q ss_pred HHhcccCCCEEecccCccccc
Q 035618 83 SLGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~ 103 (116)
.+..+++|+.+++++|.+...
T Consensus 100 ~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTTCTTCSEEECCSSCBCTT
T ss_pred HhccccCCCEEEeCCCCcccc
Confidence 688999999999999999543
No 48
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.2e-15 Score=87.74 Aligned_cols=108 Identities=26% Similarity=0.224 Sum_probs=86.3
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
..+|..+ .++++.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+..+.
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 4455443 36899999999999665555678899999999999999844344578999999999999999876666688
Q ss_pred cccCCCEEecccCccccccchHHhhhcCCC
Q 035618 86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++|+.+++++|.+++..+..+..++.|+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 999999999999999654444567777765
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.2e-15 Score=94.03 Aligned_cols=108 Identities=26% Similarity=0.241 Sum_probs=73.2
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
..+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++....+..+.
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 35566666777777777777777555555677777777777777777733333456777777777777777644334456
Q ss_pred cccCCCEEecccCccccccchHHhhhcCC
Q 035618 86 KLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+++|+.+++++|.+ ..+|..+..+..|
T Consensus 170 ~l~~L~~L~L~~N~l-~~ip~~~~~~~~L 197 (290)
T 1p9a_G 170 GLENLDTLLLQENSL-YTIPKGFFGSHLL 197 (290)
T ss_dssp TCTTCCEEECCSSCC-CCCCTTTTTTCCC
T ss_pred CcCCCCEEECCCCcC-CccChhhcccccC
Confidence 777778888888777 4666666555544
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2e-15 Score=89.28 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=48.2
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|...+.++ .+..+++|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L 161 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL 161 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence 34444555555555555444344444455555555555555543344445555555555555554222333 34455555
Q ss_pred CEEecccCccccccchHHhhhcCC
Q 035618 91 HYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+.+++++|.+ ..++ .+..++.|
T Consensus 162 ~~L~l~~n~i-~~~~-~l~~l~~L 183 (197)
T 4ezg_A 162 KSLNIQFDGV-HDYR-GIEDFPKL 183 (197)
T ss_dssp CEEECTTBCC-CCCT-TGGGCSSC
T ss_pred CEEECCCCCC-cChH-HhccCCCC
Confidence 5555555555 2233 34444444
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=100.67 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=83.4
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 55666667788888888888888888854444456778888888888888876666677778888888888877766556
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.|++++|.+.+..+..+..++.|+
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 6677777778888887777554445566666554
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=8.8e-16 Score=95.82 Aligned_cols=98 Identities=24% Similarity=0.229 Sum_probs=48.1
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL 95 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 95 (116)
++|+.|++++|.+ ..+|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 3334444444443 233444444555555555555555322234555555666666666555443344555556666666
Q ss_pred ccCccccccchHHhhhcCC
Q 035618 96 SKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~L 114 (116)
++|.+++..+..+..+++|
T Consensus 156 ~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTC
T ss_pred CCCcCCccCHHHhcCcCCC
Confidence 6666633222334444444
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=2.5e-15 Score=101.35 Aligned_cols=113 Identities=25% Similarity=0.244 Sum_probs=66.9
Q ss_pred CccccccCcCccCCcccceeeccccccccc---cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVE---IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS 78 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 78 (116)
|.+.+..|..+..+++|+.|++++|.+.+. .+..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 334444455555566666666666655431 12345556666666666666665555566666666666666666666
Q ss_pred CCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..|..+..++.| .+++++|.+++..|..+..+++|+
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 666666666666 666666666655555566665553
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=4.4e-16 Score=103.94 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=49.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-CC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-SI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~ 80 (116)
|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+++++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 33444444455555555555555555544444455555555555555555553333335555555555555555443 22
Q ss_pred cHHHhcccCCCEEecccCc
Q 035618 81 PESLGKLLKLHYLDLSKNQ 99 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~ 99 (116)
|..+..+++|+.+++++|.
T Consensus 116 ~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SCSCTTCTTCCEEEEEESS
T ss_pred hhhhhccCCccEEECCCCc
Confidence 3344455555555555554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=9.1e-16 Score=96.04 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=58.2
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCccee-cCchhhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTG-RLPPEISSFIKLEDIGLSINRFISSIPESLGKLLK 89 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 89 (116)
.+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+ ..|..+..+++|+.+++++|.+.+..|..+..+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 34555555555555555544444445555566666666665543 24455555566666666666655444555556666
Q ss_pred CCEEecccCccccccchHHhhhcCCC
Q 035618 90 LHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 90 l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|+.+++++|.+++..+..+..+++|+
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred CCEEECCCCccCccChhhccCcccCC
Confidence 66666666666444444455555443
No 56
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=4.2e-15 Score=86.23 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=82.7
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
...+|..+. +.++.|++++|.+.+..|..+..+++|+++++++|++.+..+..+..+++|+.|++++|++.+..+..+
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence 455776653 789999999999977778889999999999999999994444457899999999999999986656678
Q ss_pred hcccCCCEEecccCcccccc
Q 035618 85 GKLLKLHYLDLSKNQFFQEL 104 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~~ 104 (116)
..+++|+.+++++|.+....
T Consensus 99 ~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSCBCTTB
T ss_pred cCCCCCCEEEeCCCCCCCCc
Confidence 99999999999999986553
No 57
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=88.42 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=86.6
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
...+|..+..+++|+.|++++|.+++..+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..|
T Consensus 43 i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 34678889999999999999999977777789999999999999999996556679999999999999999986555568
Q ss_pred hcccCCCEEecccCccccc
Q 035618 85 GKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~ 103 (116)
..+++|+.+++++|.+...
T Consensus 123 ~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCTTCCEEECCSSCEECS
T ss_pred hcCccccEEEeCCCCeecC
Confidence 8999999999999998543
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=8.6e-16 Score=104.82 Aligned_cols=113 Identities=22% Similarity=0.186 Sum_probs=67.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|. .+..+++|+.+++++|.+.+..
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccC
Confidence 3444444445666666666666666665555556666666666666666666 3443 4666666666666666665444
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+..+..+++|+++++++|.+++..|..++.+++|+
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 45566666666666666666555555555555543
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=106.37 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=47.9
Q ss_pred cCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh--hhccCCCCeEEeeceeeccCCc-HHHhc
Q 035618 10 CEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE--ISSFIKLEDIGLSINRFISSIP-ESLGK 86 (116)
Q Consensus 10 ~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~ 86 (116)
..+.++++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..+.. +..+++|+.|++++|.+.+..+ ..+..
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 33444444444555444444444444444555555555555444333332 4445555555555554443322 33455
Q ss_pred ccCCCEEecccCccccccchHHhhh
Q 035618 87 LLKLHYLDLSKNQFFQELPKELEKV 111 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~~~l 111 (116)
+++|+.|++++|.+.+..|..+..+
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred CCCCCEEECCCCcCCeeCHHHcccc
Confidence 5555555555555544444444433
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=3.7e-15 Score=88.17 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=86.0
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+| .+..+++|+.|++++|.+ .. ++.+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 58 ~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 58 DLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp CCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred ChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 455 678889999999999966 33 346788999999999999988667778888999999999999988777788899
Q ss_pred ccCCCEEecccCccccccchHHhhhcCCC
Q 035618 87 LLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+++|+.+++++|...+.+| .+..+++|+
T Consensus 135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred CCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 9999999999998336776 577787775
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=8.7e-16 Score=103.80 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=54.9
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..++.+++|+.|++++|.+.+..+..|..+++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34455555666655555444444555555555555555555543333455555555555555555432223345555555
Q ss_pred EEecccCccccccchHHhhhcCCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.|++++|.+.+..|..++.+++|+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCc
Confidence 555555555444444555555443
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.1e-15 Score=103.05 Aligned_cols=99 Identities=16% Similarity=0.050 Sum_probs=50.6
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+.++++|++|++++|.+.+..|..|..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~ 122 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc
Confidence 34444445555566666666666665555555555555666666666555554444455555555555555554443222
Q ss_pred HHHhcccCCCEEecccCcc
Q 035618 82 ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l 100 (116)
..+..+++|+++++++|.+
T Consensus 123 ~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp SCCTTCTTCCEEECCSSCC
T ss_pred chhccCCcccEEECCCCcc
Confidence 3333444444444444444
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=99.66 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=97.1
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeecc-C
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFIS-S 79 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~ 79 (116)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+++++++|.+. .++. .++.+++|+.+++++|.+.+ .
T Consensus 62 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceec
Confidence 5666666778999999999999999997777788999999999999999998 4544 68899999999999999876 5
Q ss_pred CcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+|..+..+++|+++++++|.+.+..|..++.+++|
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 78999999999999999999977777778877766
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=6.6e-15 Score=87.65 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=84.5
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 55555555567889999999999999966555557889999999999999985444457889999999999999876555
Q ss_pred HHHhcccCCCEEecccCccccccc
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELP 105 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p 105 (116)
..+..+++|+.+++++|.+.+..|
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCTT
T ss_pred HHhccCCCccEEEecCCCeecCCC
Confidence 568889999999999998765554
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=99.57 Aligned_cols=104 Identities=24% Similarity=0.252 Sum_probs=67.7
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhc
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+|..+. ++++.|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+. .+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 4555554 66777777777775555566667777777777777776555666667777777777777665 45544 5
Q ss_pred ccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 87 LLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
+++|++|++++|.+.+ .+|..++.+++|+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cCCccEEeccCCccccccchhhhccCCcce
Confidence 6667777777777654 3566666666654
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=6.4e-15 Score=94.32 Aligned_cols=111 Identities=25% Similarity=0.173 Sum_probs=90.2
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+...-+
T Consensus 74 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 74 NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 56666667789999999999999999976666678899999999999999997667889999999999999999875333
Q ss_pred HHH---hcccCCCEEecccCccccccchHHhhhc
Q 035618 82 ESL---GKLLKLHYLDLSKNQFFQELPKELEKVV 112 (116)
Q Consensus 82 ~~~---~~~~~l~~l~l~~n~l~~~~p~~~~~l~ 112 (116)
..+ ..+++|+.|++++|.+.+..+..+..++
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 334 5689999999999999554445566554
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=3.9e-15 Score=84.43 Aligned_cols=99 Identities=20% Similarity=0.146 Sum_probs=85.9
Q ss_pred Ccccceeeccccccc-cccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEE
Q 035618 15 SSHLHAFDLLFNHLF-VEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYL 93 (116)
Q Consensus 15 l~~L~~l~l~~n~~~-~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 93 (116)
.++++.|++++|.+. +.+|..+..+++|+.+++++|.+.+ + ..+..+++|+.+++++|.+.+.+|..+..+++|+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999996 5788888899999999999999984 4 778889999999999999987788888889999999
Q ss_pred ecccCccccc-cchHHhhhcCCC
Q 035618 94 DLSKNQFFQE-LPKELEKVVQLS 115 (116)
Q Consensus 94 ~l~~n~l~~~-~p~~~~~l~~L~ 115 (116)
++++|.+++. .|..++.+++|+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCC
T ss_pred ECCCCcCCChHHHHHHhhCCCCC
Confidence 9999999552 347788888775
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=3.6e-15 Score=99.56 Aligned_cols=109 Identities=26% Similarity=0.301 Sum_probs=94.1
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESL 84 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 84 (116)
...+|..+. ++++.|++++|.+++..|..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+.+..+..+
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 455676554 789999999999977778889999999999999999997777889999999999999999987777779
Q ss_pred hcccCCCEEecccCcccc-ccchHHhhhcCCC
Q 035618 85 GKLLKLHYLDLSKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~ 115 (116)
..+++|++|++++|.+.+ ..|..++.+++|+
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 999999999999999965 4566778887775
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.59 E-value=1.8e-15 Score=97.49 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=51.6
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 34455555555555555443334455555555555555555533334455555555555555555422222234555555
Q ss_pred EEecccCccccccchHHhhhcCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+++++|.+.+..|..+..+++|
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTC
T ss_pred EEECCCCccCccChhhccCCCCC
Confidence 55555555544444444444444
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=9e-15 Score=102.16 Aligned_cols=115 Identities=19% Similarity=0.145 Sum_probs=98.5
Q ss_pred CCccccccCcCccCCcccceeecccccccccc-chhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccC
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEI-PNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (116)
+|.+.+..+..+..+++|+.|++++|...+.+ |..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 36777778889999999999999999655555 67789999999999999999977788999999999999999998876
Q ss_pred CcHH--HhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618 80 IPES--LGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS 115 (116)
Q Consensus 80 ~~~~--~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~ 115 (116)
++.. +..+++|++|++++|.+.+..| ..|+++++|+
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 6654 8899999999999999976654 5788888876
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.1e-14 Score=91.99 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=74.6
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|..+. ++|+.+++++|.+.+..+
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK 138 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH
T ss_pred CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH
Confidence 4445555556777777888888877776666777777777778777777776 5555433 567777777777665555
Q ss_pred HHHhcccCCCEEecccCcccc--ccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQ--ELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~--~~p~~~~~l~~L~ 115 (116)
..+..+++|+.+++++|.+.. ..+..+..++.|+
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 567777777777777777732 4555666666554
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=97.16 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=48.7
Q ss_pred ccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCCc
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+. .++.. +..+++|+.+++++|++. .+|
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 140 (353)
T 2z80_A 63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLG 140 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSC
T ss_pred cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccC
Confidence 333333334555666666666666554444444555555666666655555 33332 455555555555555544 233
Q ss_pred H--HHhcccCCCEEecccC
Q 035618 82 E--SLGKLLKLHYLDLSKN 98 (116)
Q Consensus 82 ~--~~~~~~~l~~l~l~~n 98 (116)
. .+..+++|+.+++++|
T Consensus 141 ~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SSCSCTTCTTCCEEEEEES
T ss_pred chhhhccCCCCcEEECCCC
Confidence 2 3445555555555555
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.2e-14 Score=84.57 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=82.6
Q ss_pred CccccccCcCccCCc-ccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCeEEeeceeeccC
Q 035618 2 NNSTGDIPCEIGKSS-HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 2 n~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~ 79 (116)
|.+. .++. +..+. +|+.|++++|.+++. +.+..+++|+.+++++|.+.+ +|. .+..+++|+.+++++|.+. .
T Consensus 29 n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~ 102 (176)
T 1a9n_A 29 YKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-E 102 (176)
T ss_dssp SCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-C
T ss_pred CCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-c
Confidence 4433 3443 45554 899999999998654 578889999999999999984 454 4588999999999999884 5
Q ss_pred CcH--HHhcccCCCEEecccCccccccchH----HhhhcCCC
Q 035618 80 IPE--SLGKLLKLHYLDLSKNQFFQELPKE----LEKVVQLS 115 (116)
Q Consensus 80 ~~~--~~~~~~~l~~l~l~~n~l~~~~p~~----~~~l~~L~ 115 (116)
+|. .+..+++|+.+++++|.+ ..+|.. ++.+++|+
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS
T ss_pred chhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccc
Confidence 665 688889999999999999 456664 77887775
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=4.8e-15 Score=89.94 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=75.3
Q ss_pred CccccccCcCccCCcccceeeccccc-cccccchhhcCCCCCCeEeccc-CcceecCchhhhccCCCCeEEeeceeeccC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNH-LFVEIPNDLGKLNSLTKLILKW-NQFTGRLPPEISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (116)
|++.+..+..+..+++|+.|++++|. +....+..+..+++|+.+++++ |.+.+..+..+..+++|+.+++++|.+.+
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~- 119 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM- 119 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-
Confidence 45455555567778888888888886 6444444677788888888887 77774434567777788888888887754
Q ss_pred CcHHHhcccCCC---EEecccC-ccccccchHHhhhcCCC
Q 035618 80 IPESLGKLLKLH---YLDLSKN-QFFQELPKELEKVVQLS 115 (116)
Q Consensus 80 ~~~~~~~~~~l~---~l~l~~n-~l~~~~p~~~~~l~~L~ 115 (116)
+|. +..+++|+ .+++++| .+.+..+..|..++.|+
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 554 66666666 7777777 66444344466666553
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=98.24 Aligned_cols=110 Identities=24% Similarity=0.247 Sum_probs=63.3
Q ss_pred CccccccCcCccCCcccceeecccccccc--ccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeecc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFV--EIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFIS 78 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~ 78 (116)
|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|+.+++++|.+.+.+|.. +..+++|+.+++++|++++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 55666677777778888888888887754 45566777777888888877777545543 4445555555555555443
Q ss_pred CCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 79 SIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 79 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
..|..+. ++|+.+++++|.+ ..+|..+..+++|
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L 446 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEAL 446 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTC
T ss_pred chhhhhc--ccCCEEECCCCcc-cccchhhhcCCCC
Confidence 3332211 3444444444444 2444433344333
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.3e-14 Score=83.81 Aligned_cols=101 Identities=22% Similarity=0.198 Sum_probs=85.2
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc--hhhhccCCCCeEEeeceeeccC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP--PEISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~ 79 (116)
|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .++ ..+..+++|+.+++++|.+.+.
T Consensus 59 n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 59 VGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred CCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 454444 67888999999999999997768877777999999999999998 455 6788999999999999998765
Q ss_pred Cc---HHHhcccCCCEEecccCccccccch
Q 035618 80 IP---ESLGKLLKLHYLDLSKNQFFQELPK 106 (116)
Q Consensus 80 ~~---~~~~~~~~l~~l~l~~n~l~~~~p~ 106 (116)
.+ ..+..+++|+.+++++|.+ ..+|+
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred HHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 44 3788999999999999998 66665
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=4e-15 Score=94.84 Aligned_cols=84 Identities=25% Similarity=0.265 Sum_probs=43.4
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
+|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.++++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55555555555533333345555555555555555554334445555555555555555543222235555555555555
Q ss_pred cCcc
Q 035618 97 KNQF 100 (116)
Q Consensus 97 ~n~l 100 (116)
+|.+
T Consensus 133 ~n~l 136 (353)
T 2z80_A 133 GNPY 136 (353)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 5555
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=9.1e-15 Score=95.92 Aligned_cols=96 Identities=23% Similarity=0.101 Sum_probs=48.9
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 34444445555555666666666665544444555555566666666655552222335555555555555555543222
Q ss_pred HHHhcccCCCEEeccc
Q 035618 82 ESLGKLLKLHYLDLSK 97 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~ 97 (116)
..+..+++|+.|++++
T Consensus 165 ~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 165 YAFNRVPSLMRLDLGE 180 (452)
T ss_dssp TTTTTCTTCCEEECCC
T ss_pred hHHhcCCcccEEeCCC
Confidence 2344444444444444
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=97.21 Aligned_cols=97 Identities=26% Similarity=0.196 Sum_probs=52.8
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL 95 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 95 (116)
++++.|++++|.+.+..+..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+. .+|.. .+++|+.|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 45566666666654444455555666666666666555444555555556666666665554 34433 4555555555
Q ss_pred ccCcccc-ccchHHhhhcCCC
Q 035618 96 SKNQFFQ-ELPKELEKVVQLS 115 (116)
Q Consensus 96 ~~n~l~~-~~p~~~~~l~~L~ 115 (116)
++|.+.+ .+|..++++++|+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCC
T ss_pred CCCCccccCchHhhcccCccc
Confidence 5555533 2334555555543
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=2.7e-14 Score=90.31 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=76.6
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|+.+++++|.++...+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 4445555566777777778888877776655556777777888888877777 677777777778888888777765433
Q ss_pred HHHhc------ccCCCEEecccCccc--cccchHHhhhcCCC
Q 035618 82 ESLGK------LLKLHYLDLSKNQFF--QELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~------~~~l~~l~l~~n~l~--~~~p~~~~~l~~L~ 115 (116)
..+.. ...++.+++.+|.+. +..|..+..++.|+
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred hHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 44433 245677778877774 44555666666654
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.4e-14 Score=97.99 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=89.2
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccC
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~ 79 (116)
+|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+. .+|.. +..+++|+.|++++|.+.+.
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 35666777778999999999999999997777777889999999999999999 56654 68999999999999999888
Q ss_pred CcHHHhcccCCCEEecccCccccc
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~~ 103 (116)
.|..+..+++|+.|++++|.+++.
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ChhhhhcCCcCcEEECcCCCCCCc
Confidence 788899999999999999999554
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=94.85 Aligned_cols=96 Identities=22% Similarity=0.135 Sum_probs=54.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|++.+..+..+..+++|+.|++++|.+....+..|..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 74 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 153 (440)
T 3zyj_A 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153 (440)
T ss_dssp CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence 44444455556666666666666666655555556666666666666666662222345566666666666666543333
Q ss_pred HHHhcccCCCEEeccc
Q 035618 82 ESLGKLLKLHYLDLSK 97 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~ 97 (116)
..+..+++|+.|++++
T Consensus 154 ~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGE 169 (440)
T ss_dssp TTTTTCTTCCEEECCC
T ss_pred HHhhhCcccCEeCCCC
Confidence 3444555555555554
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=2.9e-15 Score=94.20 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=53.3
Q ss_pred CccccccCcCc--cCCcccceeeccccccccccchhhcCC-----CCCCeEecccCcceecCchhhhccCCCCeEEeece
Q 035618 2 NNSTGDIPCEI--GKSSHLHAFDLLFNHLFVEIPNDLGKL-----NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN 74 (116)
Q Consensus 2 n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 74 (116)
|.+.+..|..+ ..+++|+.|++++|.+++. |..+..+ ++|+++++++|.+.+..+..+..+++|+.+++++|
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 34445555554 5566666666666666443 5444444 56666666666665433355555666666666666
Q ss_pred eeccC--CcHHH--hcccCCCEEecccCcc
Q 035618 75 RFISS--IPESL--GKLLKLHYLDLSKNQF 100 (116)
Q Consensus 75 ~~~~~--~~~~~--~~~~~l~~l~l~~n~l 100 (116)
++.+. ++..+ ..+++|+.|++++|.+
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 54332 12222 4555555555555555
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=2.3e-15 Score=94.66 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=85.2
Q ss_pred CCcccceeeccccccccccchhh--cCCCCCCeEecccCcceecCchhhhcc-----CCCCeEEeeceeeccCCcHHHhc
Q 035618 14 KSSHLHAFDLLFNHLFVEIPNDL--GKLNSLTKLILKWNQFTGRLPPEISSF-----IKLEDIGLSINRFISSIPESLGK 86 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~~~~~~--~~l~~l~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~n~~~~~~~~~~~~ 86 (116)
.+++|+.|++++|.+++..|..+ ..+++|+.+++++|.+.+. |..+..+ ++|++|++++|++.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68899999999999988888876 7899999999999999955 8777776 89999999999998777788999
Q ss_pred ccCCCEEecccCccccc--cchHH--hhhcCCC
Q 035618 87 LLKLHYLDLSKNQFFQE--LPKEL--EKVVQLS 115 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~--~p~~~--~~l~~L~ 115 (116)
+++|+.+++++|.+.+. +|..+ +.+++|+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 204 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence 99999999999998665 34444 6666664
No 85
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=2.1e-14 Score=94.18 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=90.8
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
..+|..+. ++++.|++++|.+.+..+..|..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 44565544 5899999999999887788899999999999999999976677899999999999999998866566688
Q ss_pred cccCCCEEecccCccccccchHHhhhcCCC
Q 035618 86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++|+.|++++|.+.+..+..|..+++|+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 999999999999999655455677776664
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=3e-14 Score=90.03 Aligned_cols=102 Identities=24% Similarity=0.264 Sum_probs=44.0
Q ss_pred CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618 9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL 88 (116)
Q Consensus 9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (116)
+..+..+++|+.|++++|.+. .+|..+. ++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 333444444444444444431 2222211 3344444444444433334444444555555555544433333444444
Q ss_pred CCCEEecccCccccccchHHhhhcCC
Q 035618 89 KLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 89 ~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
+|+.+++++|.+ ..+|..+..++.|
T Consensus 241 ~L~~L~L~~N~l-~~lp~~l~~l~~L 265 (330)
T 1xku_A 241 HLRELHLNNNKL-VKVPGGLADHKYI 265 (330)
T ss_dssp TCCEEECCSSCC-SSCCTTTTTCSSC
T ss_pred CCCEEECCCCcC-ccCChhhccCCCc
Confidence 555555555554 3444444444443
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.1e-14 Score=96.45 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=76.0
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.+++++|.+.+. +. ...+++|+.|++++|.+++ +
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~ 206 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M 206 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-C
Confidence 555666666777788888888888887766666665 577788888887777643 32 2246777788888777764 3
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|..+..+++|+.+++++|.++ .+|..++.++.|+
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 240 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCC
Confidence 444777777888888888874 4666666665553
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=3.8e-14 Score=89.67 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=57.5
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|..+. ++|+.+++++|.+....+
T Consensus 64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS
T ss_pred CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH
Confidence 3444444555666666666666666665555556666666666666666665 4554433 556666666666654434
Q ss_pred HHHhcccCCCEEecccCcc
Q 035618 82 ESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l 100 (116)
..+..+++|+.+++++|.+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp GGGSSCSSCCEEECCSCCC
T ss_pred hHhCCCccCCEEECCCCcc
Confidence 4466666677777776666
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=3.6e-14 Score=91.45 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=87.2
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-hhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-ISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+. .+|.. +..+++|+.+++++|.+.+..
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccC
Confidence 5566666678999999999999999997777777889999999999999998 67765 688999999999999998777
Q ss_pred cHHHhcccCCCEEecccCccccc
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~ 103 (116)
+..+..+++|+.+++++|.+++.
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC
T ss_pred hhhccCCCCCCEEECCCCcCCcc
Confidence 77789999999999999999554
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=1.4e-14 Score=98.87 Aligned_cols=107 Identities=23% Similarity=0.111 Sum_probs=67.7
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+.+..+
T Consensus 59 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 44555556666677777777777777643333356667777777777777663333556667777777777776665555
Q ss_pred HHHhcccCCCEEecccCccccccchHH
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKEL 108 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~ 108 (116)
..+..+++|+.+++++|.+++..+..+
T Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred hhhcccccCCEEEccCCcccccCHHHh
Confidence 556666666777777666655444443
No 91
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=3.7e-14 Score=95.58 Aligned_cols=94 Identities=26% Similarity=0.318 Sum_probs=85.1
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
.|+.|++++|.+++ +|. +..+++|+.+++++|.+. .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47899999999954 675 899999999999999999 899999999999999999999975 67 79999999999999
Q ss_pred cCcccccc-chHHhhhcCCC
Q 035618 97 KNQFFQEL-PKELEKVVQLS 115 (116)
Q Consensus 97 ~n~l~~~~-p~~~~~l~~L~ 115 (116)
+|.+++.. |..++.+++|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCC
T ss_pred CCCCCCCCCcHHHhcCCCCC
Confidence 99997665 89999999886
No 92
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.2e-15 Score=90.36 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=71.1
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|+.|++++|.+.+ +| .+..+++|+.+++++|.+. .+|..+..+++|+.+++++|.+.+ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 67778888888888888744 56 7777888888888888887 677777677778888888887754 44 46667777
Q ss_pred CEEecccCccccccc--hHHhhhcCCC
Q 035618 91 HYLDLSKNQFFQELP--KELEKVVQLS 115 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p--~~~~~l~~L~ 115 (116)
+.+++++|.+ ..++ ..+..+++|+
T Consensus 118 ~~L~l~~N~i-~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 118 RVLYMSNNKI-TNWGEIDKLAALDKLE 143 (198)
T ss_dssp SEEEESEEEC-CCHHHHHHHTTTTTCS
T ss_pred CEEECCCCcC-CchhHHHHHhcCCCCC
Confidence 7777777777 3333 2455565554
No 93
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=2.9e-14 Score=82.66 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=80.8
Q ss_pred ccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecc
Q 035618 17 HLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLS 96 (116)
Q Consensus 17 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 96 (116)
..+.+++++|.+ ..+|..+ ..+++.+++++|.+.+..|..+..+++|+.|++++|++.+..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 357899999998 5577655 3789999999999996667789999999999999999986666668899999999999
Q ss_pred cCccccccchHHhhhcCCC
Q 035618 97 KNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 97 ~n~l~~~~p~~~~~l~~L~ 115 (116)
+|.+++..+..|..+++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCC
T ss_pred CCccCEeCHHHhcCCCCCC
Confidence 9999666556688888775
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=5.1e-14 Score=92.11 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=90.8
Q ss_pred cccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHh
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLG 85 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 85 (116)
..+|..+. +.++.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+..+.
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 45666554 6789999999999777778899999999999999999966667899999999999999998765556789
Q ss_pred cccCCCEEecccCccccccchHHhhhcCCC
Q 035618 86 KLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++|+.|++++|.+.+..+..|..+++|+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 999999999999999655555677777665
No 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=7.8e-14 Score=88.66 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=82.5
Q ss_pred ccccCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPES 83 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 83 (116)
...+|. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|++.+..+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 455888 99999999999996 9997776678999999999999999999777778999999999999999997554445
Q ss_pred HhcccCCCEEecccCccccc
Q 035618 84 LGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~ 103 (116)
+..+. |+.|++.+|.+...
T Consensus 100 ~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TCSCC-CCEEECCSSCCCCC
T ss_pred cccCC-ceEEEeeCCCccCC
Confidence 55555 99999999998543
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.51 E-value=4.1e-14 Score=94.97 Aligned_cols=99 Identities=23% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc-C
Q 035618 1 MNNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS-S 79 (116)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~ 79 (116)
+|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.+. .+|.. .+++|+.|++++|.+.+ .
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccC
Confidence 35666666778999999999999999997777888999999999999999998 67776 78999999999999876 4
Q ss_pred CcHHHhcccCCCEEecccCcccc
Q 035618 80 IPESLGKLLKLHYLDLSKNQFFQ 102 (116)
Q Consensus 80 ~~~~~~~~~~l~~l~l~~n~l~~ 102 (116)
+|..+..+++|+.|++++|.+.+
T Consensus 138 ~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCGGGGGCTTCCEEEEECSBCCT
T ss_pred chHhhcccCcccEEecCCCcccc
Confidence 46789999999999999999855
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=4.7e-14 Score=82.11 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=79.3
Q ss_pred cceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEeccc
Q 035618 18 LHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSK 97 (116)
Q Consensus 18 L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~ 97 (116)
-+.+++++|.+ +.+|..+. ++++.+++++|.+.+..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36889999998 67777654 7999999999999966677899999999999999999865555678999999999999
Q ss_pred CccccccchHHhhhcCCC
Q 035618 98 NQFFQELPKELEKVVQLS 115 (116)
Q Consensus 98 n~l~~~~p~~~~~l~~L~ 115 (116)
|.+.+..+..|..+++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp SCCCCCCTTTTTTCTTCS
T ss_pred CccceeCHHHhccccCCC
Confidence 999655444588888775
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=3.4e-14 Score=89.51 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=67.5
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhc-CCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.+++++|.+.+ ++.. ..+++|+.+++++|.+.+ +
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCE-E
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCc-c
Confidence 444455555666777777777777777555555543 46677777777776663 2322 235667777777776653 3
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
|..+..+++|+.+++++|.+ ..+|..+..+++|+
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLE 240 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCC
T ss_pred hhhhcccCcccEEECcCCcc-cchhhHhhcCCCCC
Confidence 44466666777777777776 34565555555553
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=3.3e-13 Score=85.66 Aligned_cols=98 Identities=23% Similarity=0.283 Sum_probs=63.6
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.. + +.+..+++|+.+++++|.+. .+ +.+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 5566666666666666633 2 34566677777777777666 23 3456677777777777777666666677777777
Q ss_pred EEecccCccccccchHHhhhcCCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++++|.+++..| +..++.|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCS
T ss_pred EEEccCCccccccC--hhhhhccc
Confidence 77777777755444 55555554
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.2e-13 Score=80.40 Aligned_cols=100 Identities=20% Similarity=0.150 Sum_probs=82.2
Q ss_pred CccCCcccceeeccccccccccchhhcCCC-CCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLN-SLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLK 89 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 89 (116)
.+..+.+|+.|++++|.+. .++. +..+. +|+.+++++|.+.+ + ..+..+++|+.+++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3567889999999999995 4554 55544 99999999999985 3 67888999999999999987554455689999
Q ss_pred CCEEecccCccccccch--HHhhhcCCC
Q 035618 90 LHYLDLSKNQFFQELPK--ELEKVVQLS 115 (116)
Q Consensus 90 l~~l~l~~n~l~~~~p~--~~~~l~~L~ 115 (116)
|+.+++++|.+ +.+|. .++.++.|+
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLT 116 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCC
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCC
Confidence 99999999999 77776 678887775
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=5.2e-13 Score=83.31 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=33.3
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.+ ++ .+..+++|+.+++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 3344444444444444322 11 23344444444444444431 1 2333444444444444443321 2333444444
Q ss_pred EEecccCcc
Q 035618 92 YLDLSKNQF 100 (116)
Q Consensus 92 ~l~l~~n~l 100 (116)
.|++++|.+
T Consensus 160 ~L~L~~N~l 168 (291)
T 1h6t_A 160 TLSLEDNQI 168 (291)
T ss_dssp EEECCSSCC
T ss_pred EEEccCCcc
Confidence 444444444
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=5.2e-14 Score=93.30 Aligned_cols=111 Identities=23% Similarity=0.153 Sum_probs=72.4
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchh-----------------hhccC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPE-----------------ISSFI 64 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-----------------~~~~~ 64 (116)
|.+.+..|..+..+++|+.|++++|.+++..| +..+++|+.+++++|.+.+ ++.. ...++
T Consensus 44 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N~l~~~~~~~l~ 120 (487)
T 3oja_A 44 NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQ 120 (487)
T ss_dssp SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCCCEEECCCS
T ss_pred CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCCcCCCCCccccC
Confidence 55556566677788888888888888755444 6677777777777776653 2210 01234
Q ss_pred CCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHh-hhcCCC
Q 035618 65 KLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELE-KVVQLS 115 (116)
Q Consensus 65 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~-~l~~L~ 115 (116)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .++.|+
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 566666666666655565667777788888888887766666654 455554
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=5.1e-14 Score=85.42 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=49.0
Q ss_pred cCcCccCCcccceeeccc-cccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCC---eEEeece-eeccCCcH
Q 035618 8 IPCEIGKSSHLHAFDLLF-NHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE---DIGLSIN-RFISSIPE 82 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~ 82 (116)
.+..+..+++|+.|++++ |.+....+..+..+++|+.+++++|.+. .+|. +..+.+|+ .+++++| .+....+.
T Consensus 72 ~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcc
Confidence 334566666667777666 6664444445556666666666666655 3444 44444444 5555555 44332223
Q ss_pred HHhcccCCC-EEecccCcc
Q 035618 83 SLGKLLKLH-YLDLSKNQF 100 (116)
Q Consensus 83 ~~~~~~~l~-~l~l~~n~l 100 (116)
.|..+++|+ .+++++|.+
T Consensus 150 ~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTTTTBSSEEEEECCSCCC
T ss_pred cccchhcceeEEEcCCCCC
Confidence 344555555 555555555
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=9.6e-14 Score=87.16 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=38.6
Q ss_pred CccccccCcCc--cCCcccceeeccccccccccc----hhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeecee
Q 035618 2 NNSTGDIPCEI--GKSSHLHAFDLLFNHLFVEIP----NDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR 75 (116)
Q Consensus 2 n~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 75 (116)
|.+.+..|..+ ..+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|+
T Consensus 101 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 101 LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 44555555555 556666666666666544322 222345555555555555543333444455555555555554
Q ss_pred e
Q 035618 76 F 76 (116)
Q Consensus 76 ~ 76 (116)
+
T Consensus 181 l 181 (310)
T 4glp_A 181 G 181 (310)
T ss_dssp T
T ss_pred C
Confidence 3
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=3.9e-15 Score=88.15 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=86.0
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc-HHHhc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP-ESLGK 86 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~ 86 (116)
+| .+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+.+ +| .+..+++|+.+++++|.+...-+ ..+..
T Consensus 63 l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 63 IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA 138 (198)
T ss_dssp CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc
Confidence 66 7888999999999999994 678777778999999999999984 55 68889999999999999864222 46889
Q ss_pred ccCCCEEecccCccccccch----------HHhhhcCCC
Q 035618 87 LLKLHYLDLSKNQFFQELPK----------ELEKVVQLS 115 (116)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~p~----------~~~~l~~L~ 115 (116)
+++|+.+++++|.+.+..|. .+..+++|+
T Consensus 139 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 99999999999999776654 267777765
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=5e-14 Score=88.70 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=89.0
Q ss_pred CccccccCcCcc-CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 2 NNSTGDIPCEIG-KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 2 n~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
|.+.+..+..+. .+++|+.|++++|.++.. +. ...+++|+.+++++|.+. .+|..+..+++|+.+++++|.+. .+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-ch
Confidence 566666666664 689999999999998554 43 345899999999999999 56777889999999999999987 57
Q ss_pred cHHHhcccCCCEEecccCccc-cccchHHhhhcCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFF-QELPKELEKVVQL 114 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~-~~~p~~~~~l~~L 114 (116)
|..+..+++|+.+++++|.+. +.+|..+..++.|
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 888889999999999999997 5677777766543
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=8e-14 Score=88.06 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=67.6
Q ss_pred ccCCcccceeeccccccccc-cchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeece-eecc-CCcHHHhccc
Q 035618 12 IGKSSHLHAFDLLFNHLFVE-IPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN-RFIS-SIPESLGKLL 88 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n-~~~~-~~~~~~~~~~ 88 (116)
+..+++|+.|++++|.+... ++..+..+++|+.+++++|.+.+..+..+..+++|+.|++++| .+++ .++..+..++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 45677777777777776544 5566667777777777777766556666666777777777776 4443 2444566677
Q ss_pred CCCEEecccC-ccccc-cchHHhhhc-CCC
Q 035618 89 KLHYLDLSKN-QFFQE-LPKELEKVV-QLS 115 (116)
Q Consensus 89 ~l~~l~l~~n-~l~~~-~p~~~~~l~-~L~ 115 (116)
+|+.|++++| .+++. ++..+..++ +|+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 7777777777 66443 455566665 554
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.1e-12 Score=82.46 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=7.1
Q ss_pred ccCCcccceeecccccc
Q 035618 12 IGKSSHLHAFDLLFNHL 28 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~ 28 (116)
+..+++|+.|++++|.+
T Consensus 59 ~~~l~~L~~L~L~~n~i 75 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQI 75 (308)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred hhccCCCCEEEccCCcC
Confidence 33344444444444443
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=6.9e-14 Score=87.82 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=12.1
Q ss_pred ccccccCcCccCCcccceeecccccc
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHL 28 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~ 28 (116)
.+.+..+..+..+++|+.|++++|.+
T Consensus 156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 156 HSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp SSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred CcchhhHHHhccCCCCCEEECCCCCC
Confidence 33333344444455555555555543
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=1.5e-12 Score=81.19 Aligned_cols=97 Identities=31% Similarity=0.399 Sum_probs=78.6
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|+.|++++|.+.+ + +.+..+++|+.+++++|.+.+ + ..+..+++|+.|++++|.+.+..+ +..+++|
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence 37888999999999999855 3 467889999999999999884 4 677888999999999998875443 7888999
Q ss_pred CEEecccCccccccchHHhhhcCCC
Q 035618 91 HYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+.+++++|.+ +.+|. +..+++|+
T Consensus 181 ~~L~L~~N~i-~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 181 QNLYLSKNHI-SDLRA-LAGLKNLD 203 (291)
T ss_dssp CEEECCSSCC-CBCGG-GTTCTTCS
T ss_pred CEEECCCCcC-CCChh-hccCCCCC
Confidence 9999999999 45554 77777665
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=1.8e-12 Score=82.28 Aligned_cols=98 Identities=22% Similarity=0.295 Sum_probs=79.4
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.. .+. +..+++|+.+++++|.+.. + +.+..+++|+.+++++|.+.+ + ..+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCC
Confidence 6677888888888888844 443 7788899999999988873 3 467788899999999998764 3 4578889999
Q ss_pred EEecccCccccccchHHhhhcCCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++++|.+.+..|..++.+++|+
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCS
T ss_pred EEECcCCcCCCcChhHhhccccCC
Confidence 999999999888888888888875
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.7e-12 Score=79.98 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=53.8
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|+.|++++|.+++ +++ +..+++|+.+++++|.+. .++... . .+|+.|++++|.+.+ ++ .+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence 46666777777777777643 333 666777777777777666 333321 1 555555555555543 22 35555666
Q ss_pred CEEecccCccccccchHHhhhcCCC
Q 035618 91 HYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 91 ~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+.|++++|.++ .++ .++.++.|+
T Consensus 131 ~~L~Ls~N~i~-~~~-~l~~l~~L~ 153 (263)
T 1xeu_A 131 EILSIRNNKLK-SIV-MLGFLSKLE 153 (263)
T ss_dssp CEEECTTSCCC-BCG-GGGGCTTCC
T ss_pred cEEECCCCcCC-CCh-HHccCCCCC
Confidence 66666666663 233 344444443
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=4.6e-13 Score=85.72 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=63.8
Q ss_pred CccccccCcCccCCcccceeeccccccccccc----hhhcCCC-CCCeEecccCcceecCchhhhcc-----CCCCeEEe
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIP----NDLGKLN-SLTKLILKWNQFTGRLPPEISSF-----IKLEDIGL 71 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l 71 (116)
|++.+.+|..+...++|+.|++++|.++...+ ..+..++ +|+.+++++|.+.+..+..+..+ ++|+.|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 44555555555555557777777777654444 4555666 67777777777765445555443 66777777
Q ss_pred eceeeccCCcHHHhc----c-cCCCEEecccCccccccchHH
Q 035618 72 SINRFISSIPESLGK----L-LKLHYLDLSKNQFFQELPKEL 108 (116)
Q Consensus 72 ~~n~~~~~~~~~~~~----~-~~l~~l~l~~n~l~~~~p~~~ 108 (116)
++|.+.+..+..+.. . ++|+.|++++|.+++..+..+
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 777665554443332 2 566677777766644444443
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=2e-12 Score=81.21 Aligned_cols=83 Identities=25% Similarity=0.314 Sum_probs=35.7
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.+ ++. +..+++|+.+++++|.+. .++. +..+++|+.+++++|.+.+. +. +..+++|+
T Consensus 125 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 198 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLI 198 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCC
Confidence 3334444444444444422 111 334444444444444444 2222 44444455555555544322 21 44455555
Q ss_pred EEecccCcc
Q 035618 92 YLDLSKNQF 100 (116)
Q Consensus 92 ~l~l~~n~l 100 (116)
.+++++|.+
T Consensus 199 ~L~L~~N~l 207 (308)
T 1h6u_A 199 EVHLKNNQI 207 (308)
T ss_dssp EEECTTSCC
T ss_pred EEEccCCcc
Confidence 555555555
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=7e-14 Score=88.32 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=42.3
Q ss_pred CccCCcccceeecccc-cccc-ccchhhcCCCCCCeEecccC-cceec-CchhhhccC-CCCeEEeecee--ec-cCCcH
Q 035618 11 EIGKSSHLHAFDLLFN-HLFV-EIPNDLGKLNSLTKLILKWN-QFTGR-LPPEISSFI-KLEDIGLSINR--FI-SSIPE 82 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n-~~~~-~~~~~~~~l~~l~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~n~--~~-~~~~~ 82 (116)
.+..+++|+.|++++| .+++ .++..+..+++|+.+++++| .+.+. ++..+..++ +|+.|++++|. ++ ..++.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 3334444444444444 2322 12222333444444444444 33321 233334444 44444444442 21 12233
Q ss_pred HHhcccCCCEEecccCc-cccccchHHhhhcCC
Q 035618 83 SLGKLLKLHYLDLSKNQ-FFQELPKELEKVVQL 114 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~-l~~~~p~~~~~l~~L 114 (116)
.+..+++|+.|++++|. +++..+..+..+++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 34444555555555555 333344444444444
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=1.8e-12 Score=88.02 Aligned_cols=60 Identities=35% Similarity=0.448 Sum_probs=25.0
Q ss_pred cCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCcc
Q 035618 37 GKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 37 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l 100 (116)
..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp GGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred cCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 334444444444444431 1 233344444444444444433222 44444444444444444
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=2.1e-12 Score=79.53 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=72.2
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+. +. +..+++|+.|++++|.+.+ +|. +.. ++|+.+++++|.+.+ + +.+..+++|+.|++++|++.+ ++
T Consensus 73 N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~ 144 (263)
T 1xeu_A 73 NQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV 144 (263)
T ss_dssp SCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG
T ss_pred CccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch
Confidence 444443 33 7888899999999998844 443 223 788888888888873 3 357778888888888888764 33
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+..+++|+.+++++|.+.+. ..+..++.|+
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 577788888888888888444 4466666654
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=5.4e-12 Score=85.72 Aligned_cols=104 Identities=26% Similarity=0.304 Sum_probs=77.1
Q ss_pred CccccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
|.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+.
T Consensus 75 N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 75 NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--
Confidence 44444333 7788888888888888844 33 67788888888888888873 3 4577888888888888887653
Q ss_pred HHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
..+..+++|+.|++++|.+.+..| +..+++|+
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 567788888888888888865544 66666664
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.36 E-value=4.1e-12 Score=83.69 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=47.0
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.+. ++ +..+++|+.+++++|.+.+..| +..+++|+.+++++|.+.+. ..+..+++|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 34444455555555544322 21 4445555555555555543222 44555555555555555432 2355556666
Q ss_pred EEecccCccccccchHHhhhcCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+++++|.+++..| +..+++|
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTC
T ss_pred EEeCCCCccCccch--hhcCCCC
Confidence 66666666644444 4444444
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=1.9e-12 Score=82.26 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=75.0
Q ss_pred eeecccc-ccccccchhhcCCCCCCeEeccc-CcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEeccc
Q 035618 20 AFDLLFN-HLFVEIPNDLGKLNSLTKLILKW-NQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSK 97 (116)
Q Consensus 20 ~l~l~~n-~~~~~~~~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~ 97 (116)
.++.+++ .+ ..+|. +..+.+|+.|++++ |.+.+..+..|..+.+|+.|++++|++.+..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4578887 77 56888 98999999999996 999965567899999999999999999988888899999999999999
Q ss_pred CccccccchHHhh
Q 035618 98 NQFFQELPKELEK 110 (116)
Q Consensus 98 n~l~~~~p~~~~~ 110 (116)
|.+++..+..+..
T Consensus 90 N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 90 NALESLSWKTVQG 102 (347)
T ss_dssp SCCSCCCSTTTCS
T ss_pred CccceeCHHHccc
Confidence 9996544444443
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.30 E-value=1.7e-11 Score=80.68 Aligned_cols=96 Identities=25% Similarity=0.312 Sum_probs=45.4
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+++|+.|++++|.+.+. ++ +..+++|+.+++++|.+.+ ++. +..+++|+.+++++|.+.+..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 34444444444444444222 21 4445555555555555542 222 4455555555555555544332 44555566
Q ss_pred EEecccCccccccchHHhhhcCCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+++++|.+++. + .+..+++|+
T Consensus 335 ~L~l~~n~l~~~-~-~l~~l~~L~ 356 (466)
T 1o6v_A 335 RLFFYNNKVSDV-S-SLANLTNIN 356 (466)
T ss_dssp EEECCSSCCCCC-G-GGTTCTTCC
T ss_pred EeECCCCccCCc-h-hhccCCCCC
Confidence 666666655332 2 344444443
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=7.7e-13 Score=85.20 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=45.2
Q ss_pred ccCCcccceeecccccccc-----ccchhhcCCCCCCeEecccCcce----ecCchhhhccCCCCeEEeeceeeccC---
Q 035618 12 IGKSSHLHAFDLLFNHLFV-----EIPNDLGKLNSLTKLILKWNQFT----GRLPPEISSFIKLEDIGLSINRFISS--- 79 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~-----~~~~~~~~l~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~--- 79 (116)
+..+++|+.|++++|.++. ..+..+..+++|+.+++++|.+. ..+|..+..+++|+.|++++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3344555555555555531 12224445555555555555553 23444555555555555555555432
Q ss_pred -CcHHHhc--ccCCCEEecccCcccc
Q 035618 80 -IPESLGK--LLKLHYLDLSKNQFFQ 102 (116)
Q Consensus 80 -~~~~~~~--~~~l~~l~l~~n~l~~ 102 (116)
++..+.. +++|+.|++++|.+++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCH
Confidence 2233322 5555555555555544
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=5.8e-12 Score=85.04 Aligned_cols=90 Identities=22% Similarity=0.261 Sum_probs=61.7
Q ss_pred CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCC-------CeEEeeceeeccCCcHHHhcc
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKL-------EDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~ 87 (116)
+++|+.|++++|.+++ +|. +. ++|+.+++++|.+. .+|. +.. +| +.|++++|.++ .+|..+..+
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 4566666666666633 554 43 67777777777776 5666 433 56 77888888775 577777778
Q ss_pred cCCCEEecccCccccccchHHhhhcC
Q 035618 88 LKLHYLDLSKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~~~l~~ 113 (116)
++|+.+++++|.+++.+|..++.+..
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888888888888888887776643
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=3.8e-12 Score=81.48 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=47.8
Q ss_pred cCccCCc-ccceeeccccccccccchhhcCC-----CCCCeEecccCcceecCchhhhc----c-CCCCeEEeeceeecc
Q 035618 10 CEIGKSS-HLHAFDLLFNHLFVEIPNDLGKL-----NSLTKLILKWNQFTGRLPPEISS----F-IKLEDIGLSINRFIS 78 (116)
Q Consensus 10 ~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~~~~----~-~~L~~l~l~~n~~~~ 78 (116)
..+..++ +|+.|++++|.++...+..+..+ ++|+.+++++|.+.+..+..+.. + ++|+.|++++|.+.+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 3444555 66666666666655444444443 56666666666665444433222 2 556666666665544
Q ss_pred CCcHHHhc-----ccCCCEEecccCccc
Q 035618 79 SIPESLGK-----LLKLHYLDLSKNQFF 101 (116)
Q Consensus 79 ~~~~~~~~-----~~~l~~l~l~~n~l~ 101 (116)
..+..+.. ..+|+.|++++|.+.
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 33333222 235555555555553
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=2e-12 Score=83.23 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=16.6
Q ss_pred CCcccceeecccccccc----ccchhhcCCCCCCeEecccCcc
Q 035618 14 KSSHLHAFDLLFNHLFV----EIPNDLGKLNSLTKLILKWNQF 52 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~----~~~~~~~~l~~l~~l~l~~~~~ 52 (116)
.+++|+.|++++|.++. .++..+..+++|+.+++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 34444444444444433 1333334444444444444443
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=2.5e-11 Score=80.04 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL 90 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 90 (116)
.+..+++|+.|++++|.+++ +| +..+++|+++++++|.+.+ ++ +..+++|+.+++++|.+.+ ++ +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 45556666666666666533 22 4555666666666666552 32 5555666666666665543 33 4555566
Q ss_pred CEEecccCcccc
Q 035618 91 HYLDLSKNQFFQ 102 (116)
Q Consensus 91 ~~l~l~~n~l~~ 102 (116)
+.+++++|.+++
T Consensus 130 ~~L~l~~N~l~~ 141 (457)
T 3bz5_A 130 TYLNCARNTLTE 141 (457)
T ss_dssp CEEECTTSCCSC
T ss_pred CEEECCCCccce
Confidence 666666666533
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=1.7e-11 Score=80.75 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=81.4
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
.+..+..+++|+.|++++|.+.+ +| .+..+++|+++++++|.+.+ ++ +..+++|+.+++++|.+.+. + +..+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 34457789999999999999965 45 68899999999999999984 55 78899999999999998763 4 7899
Q ss_pred cCCCEEecccCccccccchHHhhhcCCC
Q 035618 88 LKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
++|+.+++++|.+++ +| ++.+++|+
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~ 130 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLT 130 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence 999999999999955 55 67777665
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=2.2e-11 Score=82.26 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=60.4
Q ss_pred CCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCC---
Q 035618 14 KSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKL--- 90 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l--- 90 (116)
.+++|+.|++++|.+++ +|. .+++|+.+++++|.+. .+|. +. ++|+.|++++|.++ .+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence 45667777777777643 444 4567777777777777 3666 44 77888888888776 5565 433 66
Q ss_pred ----CEEecccCccccccchHHhhhcCCC
Q 035618 91 ----HYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 91 ----~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+.|++++|.+ +.+|..+..+++|+
T Consensus 206 ~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 206 EETEIFFRCRENRI-THIPENILSLDPTC 233 (571)
T ss_dssp --CCEEEECCSSCC-CCCCGGGGGSCTTE
T ss_pred cccceEEecCCCcc-eecCHHHhcCCCCC
Confidence 8888888888 56788777777664
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=1.9e-12 Score=84.74 Aligned_cols=104 Identities=21% Similarity=0.091 Sum_probs=51.2
Q ss_pred ccCCcccceeeccccccccccchhhcC-----CCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCCcH
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGK-----LNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSIPE 82 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~ 82 (116)
+..+++|+.|++++|.+....+..+.. .++|+.+++++|.+.+. ++..+..+++|+.+++++|.+....+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 334455555555555543322222211 13555555555554432 233444556666666666655433233
Q ss_pred HHhc-----ccCCCEEecccCcccc----ccchHHhhhcCCC
Q 035618 83 SLGK-----LLKLHYLDLSKNQFFQ----ELPKELEKVVQLS 115 (116)
Q Consensus 83 ~~~~-----~~~l~~l~l~~n~l~~----~~p~~~~~l~~L~ 115 (116)
.+.. .++|+.+++++|.+++ .+|..+..+++|+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 2322 4466666666666643 5555555555554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.19 E-value=9.1e-11 Score=79.99 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=70.4
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEec
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDL 95 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 95 (116)
++|+.|++++|.+++ +| ..+++|+.+++++|.+. .+|. .+++|+.|++++|.+. .+|..+..+++|+.+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 567788888887743 55 34578888888888887 5666 5678889999999886 77888889999999999
Q ss_pred ccCccccccchHHhhhcC
Q 035618 96 SKNQFFQELPKELEKVVQ 113 (116)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~ 113 (116)
++|.+++..|..+..++.
T Consensus 292 ~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 292 EGNPLSERTLQALREITS 309 (622)
T ss_dssp CSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhccc
Confidence 999998888887776643
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=2.9e-11 Score=77.10 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=68.7
Q ss_pred ccccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCch-hhhccCCCCe-EEeeceeeccCCcH
Q 035618 5 TGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPP-EISSFIKLED-IGLSINRFISSIPE 82 (116)
Q Consensus 5 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~-l~l~~n~~~~~~~~ 82 (116)
.+++|..+. ++++.|++++|+++...+..|..+++|+++++++|.+.+.++. .|..++++.. +.+..|++....|.
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 345666553 5788888999888544344678888899999988887645554 4667777664 44556777655566
Q ss_pred HHhcccCCCEEecccCccccc
Q 035618 83 SLGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~ 103 (116)
.|..+++|+.+++++|.+...
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSC
T ss_pred hhhhccccccccccccccccC
Confidence 778888888888888888443
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.13 E-value=1.1e-10 Score=76.85 Aligned_cols=94 Identities=30% Similarity=0.353 Sum_probs=47.0
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
+| .+..+++|+.|++++|.+.+ +|.. ..+|+.+++++|.+. .+| .+..+++|+.+++++|.+.+ +|.. .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 44 35666666666666666532 3322 235556666666555 244 35555566666666555543 2221 1
Q ss_pred cCCCEEecccCccccccchHHhhhcCC
Q 035618 88 LKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+|+.+++++|.+. .+|. ++.+++|
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCC
Confidence 24455555555552 4442 4444443
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.12 E-value=7e-11 Score=77.83 Aligned_cols=88 Identities=24% Similarity=0.427 Sum_probs=39.9
Q ss_pred cccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeecc--CCcHHHhcc------
Q 035618 16 SHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFIS--SIPESLGKL------ 87 (116)
Q Consensus 16 ~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~------ 87 (116)
++|+.|++++|.+.+ +|.. +++|+.+++++|.+. .+|. .+++|+.+++++|++.+ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 356666666666533 3432 456777777777766 4555 35677777777777766 566666555
Q ss_pred -------cCCCEEecccCcccc--ccchHHhhh
Q 035618 88 -------LKLHYLDLSKNQFFQ--ELPKELEKV 111 (116)
Q Consensus 88 -------~~l~~l~l~~n~l~~--~~p~~~~~l 111 (116)
++|+.+++++|.+++ .+|..+..+
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ---------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 667777777777765 566655443
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=5.3e-11 Score=77.96 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=51.0
Q ss_pred cCcCccCCcccceeeccccccccccchhhc-----CCCCCCeEecccCcceecC----chhhhccCCCCeEEeeceeecc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLG-----KLNSLTKLILKWNQFTGRL----PPEISSFIKLEDIGLSINRFIS 78 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-----~l~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~ 78 (116)
++..+..+++|+.|++++|.++...+..+. ..++|+.+++++|.+.+.. +..+..+++|+.+++++|.+..
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 344455556666666666655332222221 1234555555555554321 3334445566666666665433
Q ss_pred CCcHHHh-----cccCCCEEecccCccccc----cchHHhhhcCCC
Q 035618 79 SIPESLG-----KLLKLHYLDLSKNQFFQE----LPKELEKVVQLS 115 (116)
Q Consensus 79 ~~~~~~~-----~~~~l~~l~l~~n~l~~~----~p~~~~~l~~L~ 115 (116)
..+..+. ..++|+.+++++|.++.. ++..+..++.|+
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 2222221 133556666666655332 344444444443
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=6.7e-10 Score=75.78 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=49.6
Q ss_pred CCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCCC
Q 035618 40 NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 40 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
++|+.+++++|.+. .+| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+ ..+|..+..+++|+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccC
Confidence 45666777777666 355 34567888888888775 4555 667899999999999 47888888888875
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.98 E-value=1.3e-09 Score=69.54 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=58.2
Q ss_pred CccccccCcCccCCcccceeeccccccccccch-hhcCCCCCCe-EecccCcceecCchhhhccCCCCeEEeeceeeccC
Q 035618 2 NNSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPN-DLGKLNSLTK-LILKWNQFTGRLPPEISSFIKLEDIGLSINRFISS 79 (116)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~l~~-l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 79 (116)
|++....+..|.++++|+.|++++|.+.+.+|. .|..++++.. +.+..|.+....|..+..+++|+.+++++|++...
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 555544445689999999999999998666654 4667777765 45566888855566788899999999999887543
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=2.3e-09 Score=67.81 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=80.8
Q ss_pred CcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCC-eEEeeceeeccCCcHHHhcccCCCEE
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLE-DIGLSINRFISSIPESLGKLLKLHYL 93 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~l~~l 93 (116)
+++|+.+++.+|.+....+..|..+.+|+.+++..| +...-+..|..|.+|+ .+.++. .+...-+..|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999986655567888999999999998 6633345789999999 999988 4544445689999999999
Q ss_pred ecccCccccccchHHhhhcCCC
Q 035618 94 DLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
++.+|.+...-+.+|.++++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 9999999666566898898886
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=3.1e-09 Score=65.63 Aligned_cols=77 Identities=23% Similarity=0.215 Sum_probs=55.0
Q ss_pred cCCCCCCeEecccCccee--cCchhhhccCCCCeEEeeceeeccCCcHHHhccc--CCCEEecccCccccccc-------
Q 035618 37 GKLNSLTKLILKWNQFTG--RLPPEISSFIKLEDIGLSINRFISSIPESLGKLL--KLHYLDLSKNQFFQELP------- 105 (116)
Q Consensus 37 ~~l~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~l~~l~l~~n~l~~~~p------- 105 (116)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..+. +|+.|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 357788999999998875 3445667888899999999888653 2334444 88899999999876555
Q ss_pred hHHhhhcCCC
Q 035618 106 KELEKVVQLS 115 (116)
Q Consensus 106 ~~~~~l~~L~ 115 (116)
..+..+++|+
T Consensus 245 ~il~~~P~L~ 254 (267)
T 3rw6_A 245 AIRERFPKLL 254 (267)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHCcccC
Confidence 2356666654
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.7e-09 Score=69.70 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred Ccccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccC----CcH
Q 035618 15 SSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISS----IPE 82 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~~ 82 (116)
.+.|+.|++++|.++.. ++..+...++|+.+++++|.+... ++..+..+++|+.|++++|.++.. +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34566666666665331 223334566666667666666531 133444556667777776665432 122
Q ss_pred HHhcccCCCEEecccCccccccchHHh
Q 035618 83 SLGKLLKLHYLDLSKNQFFQELPKELE 109 (116)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~p~~~~ 109 (116)
.+...++|+.|++++|.++..-...+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 334456677777777766444333333
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=1.3e-08 Score=62.81 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=63.1
Q ss_pred CCcccceeecccccccc--ccchhhcCCCCCCeEecccCcceecCchhhhccC--CCCeEEeeceeeccCCc-------H
Q 035618 14 KSSHLHAFDLLFNHLFV--EIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFI--KLEDIGLSINRFISSIP-------E 82 (116)
Q Consensus 14 ~l~~L~~l~l~~n~~~~--~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~-------~ 82 (116)
.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..+. .|+.|++.+|++.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47899999999999976 4456677899999999999999843 3344444 89999999999887655 2
Q ss_pred HHhcccCCCEEe
Q 035618 83 SLGKLLKLHYLD 94 (116)
Q Consensus 83 ~~~~~~~l~~l~ 94 (116)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889998887
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=1.3e-09 Score=70.19 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=55.8
Q ss_pred Ccccceeeccccccccccchhh-----cCCCCCCeEecccCccee----cCchhhhccCCCCeEEeeceeeccC----Cc
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDL-----GKLNSLTKLILKWNQFTG----RLPPEISSFIKLEDIGLSINRFISS----IP 81 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~-----~~l~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~ 81 (116)
+++|+.|++++|.++......+ ...++|+.+++++|.+.. .++..+..++.|+.|++++|.+... +.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 4566777777777644333332 234678888888887753 2333446677788888888876532 23
Q ss_pred HHHhcccCCCEEecccCcccc
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQ 102 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~ 102 (116)
..+...++|+.|++++|.++.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCH
T ss_pred HHHhcCCCcCeEECCCCCCCH
Confidence 345566788888888888844
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=2.8e-09 Score=71.80 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeec----cCCcHHHhcccCCCEEecccCccccccchHHhh
Q 035618 39 LNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFI----SSIPESLGKLLKLHYLDLSKNQFFQELPKELEK 110 (116)
Q Consensus 39 l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~ 110 (116)
+++|+.+++++|.+.+. ++.....+++|+.|+++.|.+. ..++..+..+++|+.|++++|.+ ..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhh
Confidence 44555555555544332 1122334555555555555543 12223345566677777777666 335566666
Q ss_pred hcCCC
Q 035618 111 VVQLS 115 (116)
Q Consensus 111 l~~L~ 115 (116)
+++|+
T Consensus 242 ~~~L~ 246 (592)
T 3ogk_B 242 AANLE 246 (592)
T ss_dssp CTTCC
T ss_pred hhHHH
Confidence 65554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.65 E-value=1.4e-08 Score=68.41 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=17.7
Q ss_pred cHHHhcccCCCEEecccCccccccc-hHHhhhcCCC
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELP-KELEKVVQLS 115 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p-~~~~~l~~L~ 115 (116)
|..+..+++|+.|++++|.+.+... ..+..+++|+
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3344555666666666666533322 2234444443
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=7.3e-08 Score=56.40 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred ccCCcccceeecccc-ccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccC---
Q 035618 12 IGKSSHLHAFDLLFN-HLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISS--- 79 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~--- 79 (116)
+...+.|+.|++++| .+... +...+...++|+.+++++|.+... +...+...+.|+.|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566777777777 65332 233444556777777777776532 223344456677777777766432
Q ss_pred -CcHHHhcccCCCEEec--ccCcccc
Q 035618 80 -IPESLGKLLKLHYLDL--SKNQFFQ 102 (116)
Q Consensus 80 -~~~~~~~~~~l~~l~l--~~n~l~~ 102 (116)
+...+...+.|+.|++ ++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2233445566777777 6677633
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=1e-07 Score=55.44 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=68.0
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCc-ceecCchhhhcc----CCCCeEEeecee-eccCCc
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQ-FTGRLPPEISSF----IKLEDIGLSINR-FISSIP 81 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~ 81 (116)
+|.....-..|+.|+++++.++..--..+..+++|+.|++++|. ++...-..+..+ ++|+.|++++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333579999999999876655667889999999999995 553333345543 479999999975 443222
Q ss_pred HHHhcccCCCEEecccCccccc
Q 035618 82 ESLGKLLKLHYLDLSKNQFFQE 103 (116)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~ 103 (116)
..+..+++|+.|+++++.-.+.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 3467889999999999874343
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=5.4e-08 Score=65.53 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=16.8
Q ss_pred Ccccceeeccccccccccchhhc-CCCCCCeEecccC
Q 035618 15 SSHLHAFDLLFNHLFVEIPNDLG-KLNSLTKLILKWN 50 (116)
Q Consensus 15 l~~L~~l~l~~n~~~~~~~~~~~-~l~~l~~l~l~~~ 50 (116)
+++|+.|++++|.++...+..+. .+++|+.+++.+|
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 44555555555554333333332 3445555555544
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.45 E-value=4.7e-08 Score=65.81 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=48.1
Q ss_pred cCCcccceeeccccccccccchhhcC-CCCCCeEecccCcceecCchhh-hccCCCCeEEeeceeeccCCcH-HHhcccC
Q 035618 13 GKSSHLHAFDLLFNHLFVEIPNDLGK-LNSLTKLILKWNQFTGRLPPEI-SSFIKLEDIGLSINRFISSIPE-SLGKLLK 89 (116)
Q Consensus 13 ~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~ 89 (116)
..+++|+.|++++ .++......+.. +++|+.+++++|.+.+.....+ ..+++|+.|++++|.++..... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445566666654 333333333333 5667777777666643333333 4566777777777766322222 2334667
Q ss_pred CCEEecccCccc
Q 035618 90 LHYLDLSKNQFF 101 (116)
Q Consensus 90 l~~l~l~~n~l~ 101 (116)
|+.|++++|.++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 777777777663
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=4.9e-07 Score=57.11 Aligned_cols=91 Identities=14% Similarity=-0.016 Sum_probs=72.0
Q ss_pred ccccccCcCccCCcccceeeccccccccccchhhcCCCCCC-eEecccCcceecCchhhhccCCCCeEEeeceeeccCCc
Q 035618 3 NSTGDIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLT-KLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIP 81 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 81 (116)
++....+..|.++++|+.+++..| +...-+..|..+.+|+ .+++.. .+...-+..|..|.+|+.+++..|.+...-+
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 444445556889999999999998 6555566788899999 999988 6663345679999999999998888765555
Q ss_pred HHHhcccCCCEEec
Q 035618 82 ESLGKLLKLHYLDL 95 (116)
Q Consensus 82 ~~~~~~~~l~~l~l 95 (116)
..|.++++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 68999999998863
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=2.4e-07 Score=54.22 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=68.8
Q ss_pred cCccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEe--eceeeccC
Q 035618 10 CEIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGL--SINRFISS 79 (116)
Q Consensus 10 ~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l--~~n~~~~~ 79 (116)
..+...+.|+.|++++|.+... +...+...++|+.+++++|.+... +...+...+.|+.|++ .+|.+...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3455568899999999998543 334455568899999999998743 3455677889999999 88887543
Q ss_pred ----CcHHHhcccCCCEEecccCcc
Q 035618 80 ----IPESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 80 ----~~~~~~~~~~l~~l~l~~n~l 100 (116)
+...+...+.|+.+++++|.+
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCC
Confidence 223455668999999999998
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.07 E-value=9.7e-06 Score=52.79 Aligned_cols=103 Identities=8% Similarity=-0.073 Sum_probs=68.2
Q ss_pred cccCcCccCCcccceeeccccccc-----cccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCC
Q 035618 6 GDIPCEIGKSSHLHAFDLLFNHLF-----VEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSI 80 (116)
Q Consensus 6 ~~~~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 80 (116)
..-+..|..+++|+.+.+.++... ..-+..|..+.+|+.+.+.. .+...-...|..|.+|+.+.++.+ +...-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 334556778888888888877653 23445677788888888874 455233446778888888888665 33223
Q ss_pred cHHHhcccCCCEEecccCccccccchHHhhh
Q 035618 81 PESLGKLLKLHYLDLSKNQFFQELPKELEKV 111 (116)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l 111 (116)
...|.++ +|+.+++.+|.+....+..|..+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 4567788 89999998887744333444444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=1.2e-05 Score=51.80 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=21.8
Q ss_pred cCCCCeEEeeceeeccCCcHHHh---cccCCCEEecccCcccc
Q 035618 63 FIKLEDIGLSINRFISSIPESLG---KLLKLHYLDLSKNQFFQ 102 (116)
Q Consensus 63 ~~~L~~l~l~~n~~~~~~~~~~~---~~~~l~~l~l~~n~l~~ 102 (116)
+++|+.|++..|.+.......+. .+++|++|+++.|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 45666666666654432222222 35566777777666644
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=1.1e-05 Score=46.93 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=53.4
Q ss_pred CCCCeEecccCcceecCchhhhccCCCCeEEeecee-eccCCcHHHhcc----cCCCEEecccCc-cccccchHHhhhcC
Q 035618 40 NSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINR-FISSIPESLGKL----LKLHYLDLSKNQ-FFQELPKELEKVVQ 113 (116)
Q Consensus 40 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~----~~l~~l~l~~n~-l~~~~p~~~~~l~~ 113 (116)
-.|+.++++++.++...-..+..+++|+.|++++|. ++..--..+..+ ++|+.|++++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368999999998875555567889999999999985 332111234443 479999999986 65544445666766
Q ss_pred CC
Q 035618 114 LS 115 (116)
Q Consensus 114 L~ 115 (116)
|+
T Consensus 141 L~ 142 (176)
T 3e4g_A 141 LK 142 (176)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=5.3e-05 Score=49.34 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=57.3
Q ss_pred cCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeece-------------
Q 035618 8 IPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSIN------------- 74 (116)
Q Consensus 8 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n------------- 74 (116)
.+..|..+++|+.+++..|.+.. ++........|+.+.+..+ +..--...|..|.+|+.+.+..+
T Consensus 172 ~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~ 249 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESG 249 (401)
T ss_dssp CSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCC
T ss_pred hHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCC
Confidence 34557778888888888776633 3333333456666665533 33122234555555555555432
Q ss_pred --------eeccCCcHHHhcccCCCEEecccCccc-----cccchHHhhhcCCC
Q 035618 75 --------RFISSIPESLGKLLKLHYLDLSKNQFF-----QELPKELEKVVQLS 115 (116)
Q Consensus 75 --------~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~~p~~~~~l~~L~ 115 (116)
.+...-...|.++.+|+.+.+.+|.+. ..-+.+|..+++|+
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 111111345667777888877776652 23334566666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=2.7e-05 Score=50.13 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCcccceeecccc--cccc-----ccchhh--cCCCCCCeEecccCcceecCchhhh---ccCCCCeEEeeceeeccC--
Q 035618 14 KSSHLHAFDLLFN--HLFV-----EIPNDL--GKLNSLTKLILKWNQFTGRLPPEIS---SFIKLEDIGLSINRFISS-- 79 (116)
Q Consensus 14 ~l~~L~~l~l~~n--~~~~-----~~~~~~--~~l~~l~~l~l~~~~~~~~~~~~~~---~~~~L~~l~l~~n~~~~~-- 79 (116)
.+++|+.|+++.+ ...+ .+...+ ..+++|+.|++.+|.+....+..+. .+++|+.|+++.|.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 5677777777531 1111 111122 2367888998888877643333332 478999999999887543
Q ss_pred --CcHHHhcccCCCEEecccCccccccchHHh
Q 035618 80 --IPESLGKLLKLHYLDLSKNQFFQELPKELE 109 (116)
Q Consensus 80 --~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~ 109 (116)
++..+..+++|+.|++++|.++...-..+.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred HHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 222345678999999999998554433333
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.42 E-value=0.00083 Score=43.07 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=14.2
Q ss_pred CCCCCCeEecccCcceecCchhhhccCCCCeEEee
Q 035618 38 KLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLS 72 (116)
Q Consensus 38 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 72 (116)
.+.+|+.+.+..+.+..--...|..|.+|+.+.++
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34444444444443331112234444444444444
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.0012 Score=42.61 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=30.2
Q ss_pred hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCc
Q 035618 35 DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQ 99 (116)
Q Consensus 35 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 99 (116)
.|..+.+|+.+.+..+ ++.--...|..|.+|+.+.++.+ ++..-..+|.++.+|+.+++.++.
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 3444555555555432 22111234555666666666543 221122345666666666665543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.02 E-value=0.0011 Score=42.90 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=56.8
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCC
Q 035618 12 IGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLH 91 (116)
Q Consensus 12 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 91 (116)
+..+.+|+.+.+..+ +...-...|..+.+|+.+++..+ +..--..+|..|.+|+.+.++.+ +...-..+|.++.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 445666666666544 32333345666777777777543 44122346777788888877765 3322234677788888
Q ss_pred EEecccCccccccchHHhhhcCC
Q 035618 92 YLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 92 ~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+++..+ + ..+...|..++.|
T Consensus 370 ~i~lp~~-~-~~~~~~F~~c~~L 390 (394)
T 4fs7_A 370 KVELPKR-L-EQYRYDFEDTTKF 390 (394)
T ss_dssp EEEEEGG-G-GGGGGGBCTTCEE
T ss_pred EEEECCC-C-EEhhheecCCCCC
Confidence 8877643 2 2333455555554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.0061 Score=39.37 Aligned_cols=102 Identities=10% Similarity=0.134 Sum_probs=70.2
Q ss_pred CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCc-hhhhccCCCCeEEeeceeeccCCcHHHhcc
Q 035618 9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLP-PEISSFIKLEDIGLSINRFISSIPESLGKL 87 (116)
Q Consensus 9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 87 (116)
...|..+..|+.+.+..+.. ..-...|..+..|+.+.+.. .+. .++ ..|..|.+|+.+.++.+ ++..-..+|.++
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 44577788888888866543 33445677788899888864 444 344 46888999999999765 322223568899
Q ss_pred cCCCEEecccCccccccchHHhhhcCCC
Q 035618 88 LKLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 88 ~~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
.+|+.+.+..+ +...-..+|.++++|+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 99999998654 5344456788888775
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.0018 Score=35.66 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=16.9
Q ss_pred CCCeEecccCcceecCch-hhhccCCCCeEEeeceee
Q 035618 41 SLTKLILKWNQFTGRLPP-EISSFIKLEDIGLSINRF 76 (116)
Q Consensus 41 ~l~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~ 76 (116)
+++.|++++|.+. .++. .|..+++|+.+++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555555 3333 344455555555555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.003 Score=40.48 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=67.8
Q ss_pred CcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhccc
Q 035618 9 PCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLL 88 (116)
Q Consensus 9 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 88 (116)
...+..+..|+.+.+..+ +...-...+..+..++.+.+..+ +...-...|..|.+|+.+.+..+.+...-...|.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 344667778888887665 33333455667788888877654 3312234677888999998887655433345688888
Q ss_pred CCCEEecccCccccccchHHhhhcCCC
Q 035618 89 KLHYLDLSKNQFFQELPKELEKVVQLS 115 (116)
Q Consensus 89 ~l~~l~l~~n~l~~~~p~~~~~l~~L~ 115 (116)
+|+.+.+..+ +...-..+|.++.+|+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 8999988654 4233345677777665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.0011 Score=39.26 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=51.6
Q ss_pred CCcccceeecccc-ccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeeceeeccCCc---
Q 035618 14 KSSHLHAFDLLFN-HLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSINRFISSIP--- 81 (116)
Q Consensus 14 ~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~--- 81 (116)
.-+.|+.|+++++ .+... +...+..=.+|+.|++++|.+... +.+.+...+.|+.|+++.|.+...--
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456788888775 55321 333445556788888888877632 23345566778888888887653211
Q ss_pred -HHHhcccCCCEEecccC
Q 035618 82 -ESLGKLLKLHYLDLSKN 98 (116)
Q Consensus 82 -~~~~~~~~l~~l~l~~n 98 (116)
+.+..-..|+.|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 22334456788888654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0018 Score=35.57 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.8
Q ss_pred ccCcCccCCcccceeeccccccccccchhhcCCCCCCeEecccCcce
Q 035618 7 DIPCEIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILKWNQFT 53 (116)
Q Consensus 7 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~~~~~~ 53 (116)
.+|..+. .+++.|++++|.++..-+..|..+++|+.+++.+|.+.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5665443 46899999999996655566778999999999998764
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.61 E-value=0.0073 Score=39.00 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=50.4
Q ss_pred hhcCCCCCCeEecccCcceecCchhhhccCCCCeEEeeceeeccCCcHHHhcccCCCEEecccCccccccchHHhhhcCC
Q 035618 35 DLGKLNSLTKLILKWNQFTGRLPPEISSFIKLEDIGLSINRFISSIPESLGKLLKLHYLDLSKNQFFQELPKELEKVVQL 114 (116)
Q Consensus 35 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L 114 (116)
.+..+.+|+.+.+..+ ++.--...|..|.+|+.++++.+ +...-..+|.++.+|+.+.+..+ +...-..+|..+.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445667777766554 43122346778888998888754 33222356888899999988766 534444567777777
Q ss_pred C
Q 035618 115 S 115 (116)
Q Consensus 115 ~ 115 (116)
+
T Consensus 369 ~ 369 (394)
T 4fs7_A 369 K 369 (394)
T ss_dssp C
T ss_pred C
Confidence 5
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.85 E-value=0.0087 Score=35.37 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=62.1
Q ss_pred CccCCcccceeeccccccccc----cchhhcCCCCCCeEecccCcceec----CchhhhccCCCCeEEeece---eeccC
Q 035618 11 EIGKSSHLHAFDLLFNHLFVE----IPNDLGKLNSLTKLILKWNQFTGR----LPPEISSFIKLEDIGLSIN---RFISS 79 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n---~~~~~ 79 (116)
.+..-+.|+.|++++|.+... +...+..=..|+.|+++.|.+... +.+.+.....|+.|+++++ .+...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 345567899999999998543 223344457899999999999743 2334556678999999854 32211
Q ss_pred ----CcHHHhcccCCCEEecccCcc
Q 035618 80 ----IPESLGKLLKLHYLDLSKNQF 100 (116)
Q Consensus 80 ----~~~~~~~~~~l~~l~l~~n~l 100 (116)
+-+.+..-+.|+.+++..|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223455567899999988876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.77 E-value=30 Score=17.69 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=15.2
Q ss_pred CccCCcccceeeccccccccccchhhcCCCCCCeEecc
Q 035618 11 EIGKSSHLHAFDLLFNHLFVEIPNDLGKLNSLTKLILK 48 (116)
Q Consensus 11 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~l~~l~l~ 48 (116)
.|.++.+|+.+.+-.+ ++..-...|..+.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444555555444433 112222334444444444443
Done!