Your job contains 1 sequence.
>035621
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPT
TGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS
FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND
SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA
GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW
EIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLD
LSIKNTIELENVMTVAEKDRSKAIDML
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035621
(387 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0288659 - symbol:wdr18 "WD40 repeat-contai... 302 4.7e-34 2
TAIR|locus:2082891 - symbol:RID3 "AT3G49180" species:3702... 352 3.7e-32 1
ZFIN|ZDB-GENE-040905-4 - symbol:wdr18 "WD repeat domain 1... 229 8.8e-17 1
RGD|1310646 - symbol:Wdr18 "WD repeat domain 18" species:... 225 2.7e-16 1
UNIPROTKB|Q3SZD4 - symbol:WDR18 "WD repeat-containing pro... 225 2.7e-16 1
UNIPROTKB|Q9BV38 - symbol:WDR18 "WD repeat-containing pro... 221 8.0e-16 1
MGI|MGI:2158400 - symbol:Wdr18 "WD repeat domain 18" spec... 213 7.0e-15 1
POMBASE|SPAC13G7.08c - symbol:crb3 "WD repeat protein Crb... 161 3.3e-10 2
ASPGD|ASPL0000074691 - symbol:AN4771 species:162425 "Emer... 171 8.0e-10 1
UNIPROTKB|G5EGX7 - symbol:MGCH7_ch7g852 "WD repeat-contai... 128 1.4e-05 2
UNIPROTKB|P49027 - symbol:RACK1A "Guanine nucleotide-bind... 107 0.00013 2
POMBASE|SPBC713.04c - symbol:SPBC713.04c "U3 snoRNP-assoc... 119 0.00022 2
TAIR|locus:2005539 - symbol:PRL1 "AT4G15900" species:3702... 101 0.00045 3
TAIR|locus:2037818 - symbol:AT1G15470 "AT1G15470" species... 102 0.00061 2
SGD|S000000379 - symbol:SWD3 "Essential subunit of the CO... 103 0.00063 2
ZFIN|ZDB-GENE-030131-3831 - symbol:utp15 "utp15, U3 small... 90 0.00067 2
MGI|MGI:1915086 - symbol:Wdr83 "WD repeat domain containi... 95 0.00083 3
TAIR|locus:2008159 - symbol:RACK1B_AT "AT1G48630" species... 113 0.00088 1
UNIPROTKB|F1MRM3 - symbol:RRP9 "Uncharacterized protein" ... 112 0.00091 2
>DICTYBASE|DDB_G0288659 [details] [associations]
symbol:wdr18 "WD40 repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
dictyBase:DDB_G0288659 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
GenomeReviews:CM000154_GR EMBL:AAFI02000119 KO:K14829 OMA:KLYIWEL
RefSeq:XP_636608.1 ProteinModelPortal:Q54IM3
EnsemblProtists:DDB0233986 GeneID:8626736 KEGG:ddi:DDB_G0288659
InParanoid:Q54IM3 ProtClustDB:CLSZ2728833 Uniprot:Q54IM3
Length = 560
Score = 302 (111.4 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 68/242 (28%), Positives = 113/242 (46%)
Query: 8 NEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV 66
+EVI +TS + + Y+ +G ++A F+ + + G G + A S + +
Sbjct: 40 SEVIAITSKEDSSLFIYDLRNGNLIATFNNTNNDTNGFCTIGSEYFATSQAN----KAMI 95
Query: 67 HLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK 126
++YN P++ P+ E P+ ++DG+YL G SG VY V G +LR + AH
Sbjct: 96 NIYNWKKDQPIYKTPIQEKSGPICCSSDGNYLVMGSASGMVYLWEVSTGTLLRMWEAHYN 155
Query: 127 PVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186
+SC+ +I Q +D + F H+ +T+I
Sbjct: 156 KISCITFTKDDFYIITAGDDGIINCWSFEQCLDRDVSLLRARN----SFSDHSLGITSIV 211
Query: 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI 246
C G NS + S S+D TCK W L+ G ++++ FP + + LD TET + G DG+I
Sbjct: 212 CSFGGCNSRLFSVSLDRTCKIWDLVTGRCINSIIFPTYLTSVCLDSTETTCYVGGGDGII 271
Query: 247 YK 248
Y+
Sbjct: 272 YQ 273
Score = 96 (38.9 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324
N H + S+ + +G L+S + DG+ IW+ RQ+V + N + GSIS + +
Sbjct: 327 NGHTKAITSISLSMDGSLLISGSIDGNCNIWDTFSRQIVRSIANTIKGSISSLSV 381
>TAIR|locus:2082891 [details] [associations]
symbol:RID3 "AT3G49180" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002686 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 EMBL:AL132956 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0080008 UniGene:At.46259 UniGene:At.48755
UniGene:At.72728 EMBL:BT004624 EMBL:AK227986 IPI:IPI00544514
PIR:T45823 RefSeq:NP_190487.1 ProteinModelPortal:Q9M3B4 SMR:Q9M3B4
IntAct:Q9M3B4 STRING:Q9M3B4 PRIDE:Q9M3B4 DNASU:824079
EnsemblPlants:AT3G49180.1 GeneID:824079 KEGG:ath:AT3G49180
TAIR:At3g49180 InParanoid:Q9M3B4 OMA:SEDRTCK PhylomeDB:Q9M3B4
ProtClustDB:CLSN2684231 Genevestigator:Q9M3B4 Uniprot:Q9M3B4
Length = 438
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 95/320 (29%), Positives = 148/320 (46%)
Query: 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLY 69
VI +SS + I +++ +G F SP GLT G+ F+A+S +S SGS+ +
Sbjct: 5 VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64
Query: 70 NLWSS--TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
+ W+ + + PV EP+ LA +G+YL GG+SG++Y V G +L+ + H +
Sbjct: 65 S-WTKPQAEVKSYPV-EPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRS 122
Query: 128 VSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
V+CL I + +L D+ + + L F H SVT I
Sbjct: 123 VTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQG-NTLYEHNFNEHTMSVTDIVI 181
Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
G N++IIS S D TCK W L G L + FP I LALDP F+A D IY
Sbjct: 182 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 241
Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
G + S G +++ + + + +G L+S +EDG V +W+ + +
Sbjct: 242 IGAINATSEY----GTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 297
Query: 308 VMVL---KNELAGSISEMVI 324
V L K G ++ + I
Sbjct: 298 VRTLIHAKGSRKGPVNNIQI 317
>ZFIN|ZDB-GENE-040905-4 [details] [associations]
symbol:wdr18 "WD repeat domain 18" species:7955
"Danio rerio" [GO:0070121 "Kupffer's vesicle development"
evidence=IMP] [GO:0007368 "determination of left/right symmetry"
evidence=IGI;IMP] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 ZFIN:ZDB-GENE-040905-4 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0007368 GO:GO:0070121
KO:K14829 GeneTree:ENSGT00390000000289 CTD:57418
HOGENOM:HOG000046506 HOVERGEN:HBG059735 OMA:KQCIRTV
OrthoDB:EOG4PZJ6K InterPro:IPR026987 Pfam:PF14077 EMBL:BX640454
EMBL:CR555295 EMBL:BC080252 IPI:IPI00484362 RefSeq:NP_001005206.1
UniGene:Dr.75957 ProteinModelPortal:Q68EI0 STRING:Q68EI0
PRIDE:Q68EI0 Ensembl:ENSDART00000060251 GeneID:445819
KEGG:dre:445819 InParanoid:Q68EI0 NextBio:20832197 Bgee:Q68EI0
Uniprot:Q68EI0
Length = 431
Score = 229 (85.7 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 73/323 (22%), Positives = 139/323 (43%)
Query: 9 EVILTSSPEGPI---TAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
EV+L++ G + Y+P +G+ + G + R LT +I + + G
Sbjct: 6 EVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----GKNY 61
Query: 66 VHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH 124
++++ + L I P V L + DG Y+ G ++ +Y V G++L S H
Sbjct: 62 INVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLLAILSRH 120
Query: 125 DKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA 184
+ +SC+K +A + V + + P+ + H+ +T
Sbjct: 121 FQDLSCIKFTDDSSHFVSGGKDN-LAFIWNLSSVVQLDSSRTPEPRHILS--RHSLPITD 177
Query: 185 ITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244
I C + + + + S+D T K W + +G L +V F IM + DP E F GSDG
Sbjct: 178 IHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDG 237
Query: 245 LIYKGLL--KYQSRQQMHKGQ-ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
I++ L SR + + E + H +V + + +G L+S + D +V +W+
Sbjct: 238 NIFQVSLCSTSLSRDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDETVRMWD 297
Query: 302 IEKRQVVMVLKNELAGSISEMVI 324
++ +Q + + + G ++ I
Sbjct: 298 VQSKQCIWTINHR--GPVTNAAI 318
>RGD|1310646 [details] [associations]
symbol:Wdr18 "WD repeat domain 18" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1310646 GO:GO:0007275 GO:GO:0005737 GO:GO:0005654
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
CTD:57418 HOGENOM:HOG000046506 HOVERGEN:HBG059735 OrthoDB:EOG4PZJ6K
InterPro:IPR026987 Pfam:PF14077 EMBL:BC099828 IPI:IPI00369179
RefSeq:NP_001034116.1 UniGene:Rn.229161 ProteinModelPortal:Q499N3
STRING:Q499N3 PhosphoSite:Q499N3 PRIDE:Q499N3 GeneID:314617
KEGG:rno:314617 UCSC:RGD:1310646 InParanoid:Q499N3 NextBio:667921
ArrayExpress:Q499N3 Genevestigator:Q499N3
GermOnline:ENSRNOG00000012379 Uniprot:Q499N3
Length = 431
Score = 225 (84.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 78/327 (23%), Positives = 138/327 (42%)
Query: 6 PCNEVILTSS--PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS 63
P V+ T S P + SGA L + G ++ RGL ++ A+ G
Sbjct: 4 PMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGK 59
Query: 64 GSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS 122
+ + L L I P PV L T +G Y+ G ++ ++Y V G++L S
Sbjct: 60 NYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILS 118
Query: 123 AHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHND 180
H + VSCLK ++ + ++ +P ++ + V H
Sbjct: 119 RHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQA-----DPSRILAPRHVWSQHTL 173
Query: 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240
+T + C G + + + S+D T K W + +G L +V F I + +D E F
Sbjct: 174 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 233
Query: 241 GSDGLIYKGLL--KYQSRQQMHKGQELV-TLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
GSDG I++ L + R+Q + ++ + H V + + +G L+S + D SV
Sbjct: 234 GSDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESV 293
Query: 298 YIWEIEKRQVVMVLKNELAGSISEMVI 324
+W+++ +Q V + L G ++ I
Sbjct: 294 RLWDVKSKQCVRTVP--LKGPVTNAAI 318
>UNIPROTKB|Q3SZD4 [details] [associations]
symbol:WDR18 "WD repeat-containing protein 18" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0007275 GO:GO:0005737 GO:GO:0005654
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00390000000289 EMBL:BC102946 IPI:IPI00685371
RefSeq:NP_001029760.1 UniGene:Bt.87593 ProteinModelPortal:Q3SZD4
STRING:Q3SZD4 PRIDE:Q3SZD4 Ensembl:ENSBTAT00000003156 GeneID:533356
KEGG:bta:533356 CTD:57418 HOGENOM:HOG000046506 HOVERGEN:HBG059735
InParanoid:Q3SZD4 OMA:KQCIRTV OrthoDB:EOG4PZJ6K NextBio:20876013
InterPro:IPR026987 Pfam:PF14077 Uniprot:Q3SZD4
Length = 432
Score = 225 (84.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 72/302 (23%), Positives = 129/302 (42%)
Query: 27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEP 85
SGA L + G ++ RGL ++ A+ + G + + L L I P P
Sbjct: 27 SGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GKNYICAWELQRKDQLQQKIMCPGP 82
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
V L T+ +G Y+ G +S N+Y V G++L S H + VSCL+
Sbjct: 83 VTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGK 141
Query: 146 XXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205
++ + ++ D + + H +T + C G + + + S+D T
Sbjct: 142 DCLVLAWSLCSVLQA---DPSRTPAPRHVWSRHTLPITDLHCGFGGPLARVATASLDQTV 198
Query: 206 KFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-GLLKY--QSRQQMHKG 262
K W + +G L +V F I+ + +D E F GSDG I++ L + Q +
Sbjct: 199 KLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQREKSFQPE 258
Query: 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322
QE + H V + + +G L+S + D +V +W+++ +Q + + L G ++
Sbjct: 259 QEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT--LKGPVTNA 316
Query: 323 VI 324
I
Sbjct: 317 CI 318
>UNIPROTKB|Q9BV38 [details] [associations]
symbol:WDR18 "WD repeat-containing protein 18" species:9606
"Homo sapiens" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0007275 GO:GO:0005737 GO:GO:0005654
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:AC004528 CTD:57418 HOGENOM:HOG000046506 HOVERGEN:HBG059735
OMA:KQCIRTV OrthoDB:EOG4PZJ6K InterPro:IPR026987 Pfam:PF14077
EMBL:BC000040 EMBL:BC001648 IPI:IPI00032533 RefSeq:NP_077005.2
UniGene:Hs.325321 ProteinModelPortal:Q9BV38 SMR:Q9BV38
IntAct:Q9BV38 MINT:MINT-1388285 STRING:Q9BV38 PhosphoSite:Q9BV38
DMDM:143811475 PaxDb:Q9BV38 PeptideAtlas:Q9BV38 PRIDE:Q9BV38
Ensembl:ENST00000251289 GeneID:57418 KEGG:hsa:57418 UCSC:uc002lqm.1
GeneCards:GC19P000935 HGNC:HGNC:17956 neXtProt:NX_Q9BV38
PharmGKB:PA38269 InParanoid:Q9BV38 PhylomeDB:Q9BV38
GenomeRNAi:57418 NextBio:63562 Bgee:Q9BV38 CleanEx:HS_WDR18
Genevestigator:Q9BV38 GermOnline:ENSG00000065268 Uniprot:Q9BV38
Length = 432
Score = 221 (82.9 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 73/327 (22%), Positives = 140/327 (42%)
Query: 6 PCNEVILTSS--PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS 63
P + T S P + SGA L + G ++ RGL ++ A+ + G
Sbjct: 4 PMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GK 59
Query: 64 GSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS 122
+ + L L I P PV L + +G Y+ G ++ +++ V G++L S
Sbjct: 60 NYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILS 118
Query: 123 AHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHND- 180
H + VSCL+ ++ + ++ +P + + V +H+
Sbjct: 119 RHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQA-----DPSRIPAPRHVWSHHAL 173
Query: 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240
+T + C G + + + S+D T K W + +G L +V F +IM + +D E F
Sbjct: 174 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 233
Query: 241 GSDGLIYK-GLLKY--QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
GS+G I++ L + Q + H Q+ + H V + + +G L+S + D +V
Sbjct: 234 GSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 293
Query: 298 YIWEIEKRQVVMVLKNELAGSISEMVI 324
+W+++ +Q + + L G ++ I
Sbjct: 294 RLWDVQSKQCIRTVA--LKGPVTNAAI 318
>MGI|MGI:2158400 [details] [associations]
symbol:Wdr18 "WD repeat domain 18" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:2158400 GO:GO:0007275
GO:GO:0005737 GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00390000000289
CTD:57418 HOGENOM:HOG000046506 HOVERGEN:HBG059735 OMA:KQCIRTV
OrthoDB:EOG4PZJ6K InterPro:IPR026987 Pfam:PF14077 EMBL:AK133716
EMBL:AK160713 EMBL:AK168691 EMBL:BC095984 IPI:IPI00136252
RefSeq:NP_780659.2 UniGene:Mm.35828 ProteinModelPortal:Q4VBE8
SMR:Q4VBE8 STRING:Q4VBE8 PhosphoSite:Q4VBE8 PaxDb:Q4VBE8
PRIDE:Q4VBE8 Ensembl:ENSMUST00000045247 GeneID:216156
KEGG:mmu:216156 UCSC:uc007gat.1 InParanoid:Q4VBE8 NextBio:375024
Bgee:Q4VBE8 CleanEx:MM_WDR18 Genevestigator:Q4VBE8
GermOnline:ENSMUSG00000035754 Uniprot:Q4VBE8
Length = 431
Score = 213 (80.0 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 72/308 (23%), Positives = 131/308 (42%)
Query: 27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEP 85
SGA L + G ++ RGL ++ A+ G + + L L I P P
Sbjct: 27 SGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGKNYICAWELQRKDQLQQKIMCPGP 82
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
V L T +G Y+ G ++ ++Y V G++L S H + VSCLK
Sbjct: 83 VTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGK 141
Query: 146 XXVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDC 203
+ + ++ +P ++ + V H +T + C G + + + S+D
Sbjct: 142 DCLALAWSLCSVLQA-----DPSRILAPRHVWSQHTLPITDLHCGFGGPMARVATASLDQ 196
Query: 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-------GLLKYQSR 256
T K W + +G L +V F I + +D E F GSDG I++ GL ++ +
Sbjct: 197 TVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIFQVDLCSWPGLREHSFQ 256
Query: 257 QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316
+ + G+ + H V + + +G L+S + D SV +W+++ +Q + + L
Sbjct: 257 PEQNTGK----VFKGHRNQVTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCLRTVT--LK 310
Query: 317 GSISEMVI 324
G ++ I
Sbjct: 311 GPVTNAAI 318
>POMBASE|SPAC13G7.08c [details] [associations]
symbol:crb3 "WD repeat protein Crb3" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005720
"nuclear heterochromatin" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0030702 "chromatin silencing at centromere" evidence=IMP]
[GO:0032153 "cell division site" evidence=IDA] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] [GO:0097344 "Rix1 complex"
evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 PomBase:SPAC13G7.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0032153 GO:GO:0044732
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0005720
GO:GO:0030702 GO:GO:0006364 GO:GO:0097344 EMBL:AB008572 PIR:T37658
RefSeq:NP_593710.1 ProteinModelPortal:Q10272 MINT:MINT-4698297
STRING:Q10272 EnsemblFungi:SPAC13G7.08c.1 GeneID:2542844
KEGG:spo:SPAC13G7.08c KO:K14829 OMA:NDETAPN OrthoDB:EOG4M68SG
NextBio:20803885 Uniprot:Q10272
Length = 446
Score = 161 (61.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 52/232 (22%), Positives = 100/232 (43%)
Query: 20 ITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLH 78
+ +N +G +++ F S SP + T ++A H P ++++N
Sbjct: 18 VLCHNLHTGTLVSTFRQS-SPAKNATCTTLNHLLSAQHTRP-----QLNIHNFGKEILDQ 71
Query: 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXX 138
+I +PE + + ++ GS+L G GN+Y S+ G ++ F AH +P++ LK
Sbjct: 72 SIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGM 131
Query: 139 XXXXXXXXXVIATVPIFQLVDEHT--DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-I 195
+ I LVD+++ + N + F H S+ ++ G S
Sbjct: 132 VLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGR 191
Query: 196 IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
+ + S D T + W + G L+T+ P + +DP+E + G+I+
Sbjct: 192 LYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGIIW 243
Score = 53 (23.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 288 LVSAAEDGSVYIWEIEKRQVV 308
L+S +DG+V +W+ RQV+
Sbjct: 311 LISGDKDGNVLVWDSVSRQVL 331
>ASPGD|ASPL0000074691 [details] [associations]
symbol:AN4771 species:162425 "Emericella nidulans"
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0030702 "chromatin
silencing at centromere" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0097344 "Rix1 complex"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0005720 "nuclear heterochromatin" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 EMBL:BN001303
EMBL:AACD01000081 KO:K14829 RefSeq:XP_662375.1
ProteinModelPortal:Q5B3V9 EnsemblFungi:CADANIAT00005651
GeneID:2872568 KEGG:ani:AN4771.2 HOGENOM:HOG000194233 OMA:HVYSREK
OrthoDB:EOG4TB7M5 Uniprot:Q5B3V9
Length = 573
Score = 171 (65.3 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 68/280 (24%), Positives = 116/280 (41%)
Query: 52 IAASHI-SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA--DGSYLFTGGLSGNVY 108
++ASH+ + +VH+Y+ +P PE + +A +G + G G +
Sbjct: 54 VSASHVFAAQAEKATVHVYSREKGNQEATVPFPERIRSIAVAGSKNGDIVVLGTEGGRLI 113
Query: 109 AISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVD--EHTD--- 163
V G + + ++H +PV+ + A+V ++ LVD T
Sbjct: 114 LWEVCTGRQVATTASHLRPVTSVVVDPSSNFILSGSSD---ASVHVWSLVDLLSFTKPPS 170
Query: 164 --DKNPDDLMLQKFVAHNDSVTAITC--CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV 219
++ P + ++ F H +V+AI G +N I IS + D T W G L
Sbjct: 171 GRNQQPPNSPIRTFSNHRAAVSAIVVGHSTGRYN-IAISAAQDNTAIVWDYRTGHVLRNF 229
Query: 220 TFPCAIMGLALDPTETDFFAAGSDGLIYK-GLLKYQSRQQ-MHKG--QELVTLANRHD-- 273
P + + LALDP + F+A DG + K QS Q +H Q A+ D
Sbjct: 230 LLPASAISLALDPVDRAFYAGYEDGSVQSLDFYKEQSIQHPLHNPSLQATPAQASSEDRW 289
Query: 274 -------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306
G ++ + +G L+S E+G VY W + +R+
Sbjct: 290 LPPSADSGAAHALTLSYDGMTLLSGHENGKVYSWNVGRRK 329
>UNIPROTKB|G5EGX7 [details] [associations]
symbol:MGCH7_ch7g852 "WD repeat-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720624.1
ProteinModelPortal:G5EGX7 EnsemblFungi:MGG_03057T0 GeneID:2682610
KEGG:mgr:MGG_03057 Uniprot:G5EGX7
Length = 462
Score = 128 (50.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 56/257 (21%), Positives = 104/257 (40%)
Query: 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS---- 63
+E ++S GP+++ N S + + + SP + A K AA + GS
Sbjct: 3 SEEFVSSLCGGPLSS-NTSIAKDVGIYVHTLSPAYSVKSAFKKNSAAPNCVAVNGSHIFA 61
Query: 64 -----GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL 118
++H+Y+ +P PE + +A D L G G + G ++
Sbjct: 62 AQHEKAALHVYSRIRGNQEAYVPFPERIRCVALAGD--VLILGTAEGRIMLWEFCTGRLV 119
Query: 119 RSFSAHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVD-EHTDDKNPDDLMLQKFVA 177
+ + H +PV+CL + ++ QL++ + ++ P+ +
Sbjct: 120 STPACHVQPVTCLAVTPHSVLSGSDDSNVHVWSLA--QLLELDIVAEQAPERTLSN---- 173
Query: 178 HNDSVTAITCCIGSF-------NSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230
H ++TA+ G+ +++ +S S D TC W G L T+ FP + + L+L
Sbjct: 174 HRAAITALAASSGADGGSGATDSTLCVSASKDKTCVVWNYRTGLPLRTLLFPASPLCLSL 233
Query: 231 DPTETDFFAAGSDGLIY 247
DP A DG +Y
Sbjct: 234 DPCTRALTLAADDGSVY 250
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 288 LVSAAEDGSVYIWEI 302
L AA+DGSVY+ E+
Sbjct: 240 LTLAADDGSVYLVEL 254
>UNIPROTKB|P49027 [details] [associations]
symbol:RACK1A "Guanine nucleotide-binding protein subunit
beta-like protein A" species:39947 "Oryza sativa Japonica Group"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0050832 "defense response to fungus" evidence=IMP] [GO:0060267
"positive regulation of respiratory burst" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005886 GO:GO:0005737 GO:GO:0009507 GO:GO:0046686
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0050832 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0048364 GO:GO:0004871 GO:GO:0048367
GO:GO:0022626 EMBL:AP008207 EMBL:CM000138 HOGENOM:HOG000091643
KO:K14753 OMA:IRVWQVM ProtClustDB:CLSN2682135 EMBL:D38231
EMBL:AP003452 EMBL:AK060428 EMBL:AK098893 EMBL:AK121587 PIR:T03764
RefSeq:NP_001043910.1 UniGene:Os.4684 ProteinModelPortal:P49027
SMR:P49027 STRING:P49027 PRIDE:P49027
EnsemblPlants:LOC_Os01g49290.1 GeneID:4324115
KEGG:dosa:Os01t0686800-02 KEGG:osa:4324115 Gramene:P49027
GO:GO:0060267 Uniprot:P49027
Length = 334
Score = 107 (42.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 38/155 (24%), Positives = 69/155 (44%)
Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTFPCAIMGLALDPTETD 236
HN V+ + +F I+S S D T K W L N + + +A+ P +
Sbjct: 164 HNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSL 223
Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
+ G DG+ LL + +G+ L +L G ++ + + + + AA S
Sbjct: 224 CASGGKDGVT---LL-----WDLAEGKRLYSL---DAGSIIHSLCFSPNRYWLCAATQDS 272
Query: 297 VYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331
+ IW++E + +V LK E+ S ++M+ T + S
Sbjct: 273 IKIWDLESKHIVQDLKPEIPVSKNQMLYCTSLNWS 307
Score = 54 (24.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128
V + ++DG + +G G + + G R F HDK V
Sbjct: 78 VQDVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRFVGHDKDV 120
>POMBASE|SPBC713.04c [details] [associations]
symbol:SPBC713.04c "U3 snoRNP-associated protein Utp1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0030515 "snoRNA binding" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 PomBase:SPBC713.04c GO:GO:0005829
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 EMBL:CU329671 GO:GO:0030515 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR011047
SUPFAM:SSF50998 GO:GO:0006364 GO:GO:0005732 HOGENOM:HOG000160363
KO:K14558 OMA:VWQCDTP InterPro:IPR027145 InterPro:IPR007148
PANTHER:PTHR19858 Pfam:PF04003 RefSeq:NP_595343.1
ProteinModelPortal:Q9C1X1 STRING:Q9C1X1 EnsemblFungi:SPBC713.04c.1
GeneID:2541182 KEGG:spo:SPBC713.04c OrthoDB:EOG4350F7
NextBio:20802294 Uniprot:Q9C1X1
Length = 854
Score = 119 (46.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 38/137 (27%), Positives = 64/137 (46%)
Query: 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG--LALDP 232
F H +V+ + C +++ S S+D + + W L+ + T T P + +A+DP
Sbjct: 377 FTQHTSAVSGL--CFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDP 434
Query: 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292
+ + AGS + Q+ GQ L TLA H+G V S+ + G L S +
Sbjct: 435 SG-EIVCAGSQDSFEIFMWSVQT------GQLLETLAG-HEGPVSSLSFNSSGSLLASGS 486
Query: 293 EDGSVYIWEIEKRQVVM 309
D +V IW+I R ++
Sbjct: 487 WDKTVRIWDIFSRSGIV 503
Score = 50 (22.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCL 131
+ ++ L ++DG + TG G + + G + +F+ H VS L
Sbjct: 340 DALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGL 387
>TAIR|locus:2005539 [details] [associations]
symbol:PRL1 "AT4G15900" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009870 "defense
response signaling pathway, resistance gene-dependent"
evidence=IMP] [GO:0010204 "defense response signaling pathway,
resistance gene-independent" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0050832 "defense response
to fungus" evidence=IMP] [GO:0006508 "proteolysis" evidence=IMP]
[GO:0009755 "hormone-mediated signaling pathway" evidence=RCA;IMP]
[GO:0010154 "fruit development" evidence=IMP] [GO:0010182 "sugar
mediated signaling pathway" evidence=RCA;IMP] [GO:0048364 "root
development" evidence=IMP] [GO:0048366 "leaf development"
evidence=RCA;IMP] [GO:0048825 "cotyledon development"
evidence=RCA;IMP] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010431 "seed
maturation" evidence=RCA] [GO:0010564 "regulation of cell cycle
process" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045595
"regulation of cell differentiation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] [GO:0009749 "response to glucose stimulus"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 UniPathway:UPA00143 GO:GO:0005634 GO:GO:0045892
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0050832
GO:GO:0009749 GO:GO:0042742 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006508 GO:GO:0045087 GO:GO:0048364
GO:GO:0010182 GO:GO:0016567 GO:GO:0009870 GO:GO:0009755
GO:GO:0048366 GO:GO:0048825 EMBL:Z97339 GO:GO:0010204 GO:GO:0080008
EMBL:AL161542 HOGENOM:HOG000207595 KO:K12862 OMA:ITAEADK
EMBL:X82824 EMBL:X82825 IPI:IPI00524936 PIR:S49820
RefSeq:NP_193325.1 UniGene:At.103 ProteinModelPortal:Q42384
SMR:Q42384 IntAct:Q42384 STRING:Q42384 PaxDb:Q42384 PRIDE:Q42384
EnsemblPlants:AT4G15900.1 GeneID:827272 KEGG:ath:AT4G15900
GeneFarm:2847 TAIR:At4g15900 InParanoid:Q42384 PhylomeDB:Q42384
ProtClustDB:CLSN2685622 Genevestigator:Q42384 GermOnline:AT4G15900
Uniprot:Q42384
Length = 486
Score = 101 (40.6 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 196 IISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254
+++ S D T KFW L G +ST+T ++ + L P E F +A +D
Sbjct: 317 VVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNT--------- 367
Query: 255 SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
+ + KG+ + ++ +++ M +NE +V+ ++GS++ W+
Sbjct: 368 KKFSLPKGEFCHNMLSQQK-TIINAMAVNEDGVMVTGGDNGSIWFWD 413
Score = 57 (25.1 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCL 131
E V LA + +Y+F+ G V + + ++RS+ H V CL
Sbjct: 219 EQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 266
Score = 40 (19.1 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 9 EVILTSSPEGP--ITAY-NPSSGAILAHFSGSRSPRRGLT 45
E +++ P P I PS+ LA GS+S ++G T
Sbjct: 62 EPVVSQPPRQPDRINEQPGPSNALSLAAPEGSKSTQKGAT 101
>TAIR|locus:2037818 [details] [associations]
symbol:AT1G15470 "AT1G15470" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 EMBL:AC007591 GO:GO:0016301
HSSP:P16649 HOGENOM:HOG000174258 KO:K13137 OMA:LWQTTVG
ProtClustDB:CLSN2687815 EMBL:AY084604 EMBL:BT000935 IPI:IPI00536047
RefSeq:NP_563978.1 UniGene:At.11430 ProteinModelPortal:Q9XI22
SMR:Q9XI22 STRING:Q9XI22 PaxDb:Q9XI22 PRIDE:Q9XI22
EnsemblPlants:AT1G15470.1 GeneID:838117 KEGG:ath:AT1G15470
TAIR:At1g15470 InParanoid:Q9XI22 PhylomeDB:Q9XI22
ArrayExpress:Q9XI22 Genevestigator:Q9XI22 Uniprot:Q9XI22
Length = 333
Score = 102 (41.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 169 DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL 228
D+ K V ++ + +T S + I+ + + KFW N L + PC +
Sbjct: 169 DIRSDKIVHTLETKSPVTSAEVSQDGRYITTADGSSVKFWDAKNFGLLKSYDMPCNVESA 228
Query: 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKN 287
+L+P + F AG + + + R G+E+ N+ H G V V G++
Sbjct: 229 SLEPKHGNTFIAGGEDM-------WVHRFDFQTGEEIG--CNKGHHGPVHCVRYAPGGES 279
Query: 288 LVSAAEDGSVYIWEI 302
S +EDG+V IW +
Sbjct: 280 YTSGSEDGTVRIWVV 294
Score = 53 (23.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV-SC 130
H+ PV + VA T DG +L + N + GD + +F H V SC
Sbjct: 10 HSRPVVD-VAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSC 62
>SGD|S000000379 [details] [associations]
symbol:SWD3 "Essential subunit of the COMPASS (Set1C)
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005694
"chromosome" evidence=IEA] [GO:0051568 "histone H3-K4 methylation"
evidence=IMP;IDA] [GO:0048188 "Set1C/COMPASS complex" evidence=IPI]
[GO:0042800 "histone methyltransferase activity (H3-K4 specific)"
evidence=IDA;IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SGD:S000000379 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 EMBL:BK006936
GO:GO:0006348 GO:GO:0048188 GO:GO:0051568 GO:GO:0000781
GO:GO:0000723 KO:K14963 OrthoDB:EOG49CTJ0 EMBL:Z36043 EMBL:AY693212
PIR:S46046 RefSeq:NP_009734.1 ProteinModelPortal:P38123 SMR:P38123
DIP:DIP-1754N IntAct:P38123 MINT:MINT-393581 STRING:P38123
PaxDb:P38123 PeptideAtlas:P38123 EnsemblFungi:YBR175W GeneID:852472
KEGG:sce:YBR175W CYGD:YBR175w HOGENOM:HOG000091642 OMA:IRIWCAR
NextBio:971432 Genevestigator:P38123 GermOnline:YBR175W
Uniprot:P38123
Length = 315
Score = 103 (41.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 34/136 (25%), Positives = 68/136 (50%)
Query: 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-AIMGLA 229
+L F+ H V ++T +++ + SMD + K W LNG+ + T++ A++ +
Sbjct: 88 LLHTFIGHTAPVISLT--FNRKGNLLFTSSMDESIKIWDTLNGSLMKTISAHSEAVVSVD 145
Query: 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN--RHDGVV-VSVMMMNEG- 285
+ ++ ++GS Y GL++ + H + L + R +GVV +S + +E
Sbjct: 146 VPMNDSSILSSGS----YDGLIRIFDAETGHCLKTLTYDKDWKRENGVVPISQVKFSENA 201
Query: 286 KNLVSAAEDGSVYIWE 301
+ L+ + DG V IW+
Sbjct: 202 RYLLVKSLDGVVKIWD 217
Score = 51 (23.0 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 288 LVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTG 340
++S E+G +Y W + + ++ +L L S V++ G+ C + G
Sbjct: 256 VISGYENGDIYCWNSDTKSLLQLLDGSLYHH-SSPVMSIHCFGNIMCSLALNG 307
>ZFIN|ZDB-GENE-030131-3831 [details] [associations]
symbol:utp15 "utp15, U3 small nucleolar
ribonucleoprotein, homolog" species:7955 "Danio rerio" [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045766 "positive regulation of angiogenesis"
evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
InterPro:IPR018983 Pfam:PF00400 Pfam:PF09384 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 ZFIN:ZDB-GENE-030131-3831
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0045766 InterPro:IPR018391
SMART:SM00564 GO:GO:0006364 CTD:84135 GeneTree:ENSGT00390000004228
HOGENOM:HOG000185028 HOVERGEN:HBG080690 KO:K14549 OMA:QFEGHTK
OrthoDB:EOG4Q58P5 EMBL:AY398371 EMBL:BC045308 IPI:IPI00491201
RefSeq:NP_955998.1 UniGene:Dr.78694 ProteinModelPortal:Q7ZW33
STRING:Q7ZW33 Ensembl:ENSDART00000127397 Ensembl:ENSDART00000148774
GeneID:325106 KEGG:dre:325106 InParanoid:Q7ZW33 NextBio:20809122
Bgee:Q7ZW33 Uniprot:Q7ZW33
Length = 517
Score = 90 (36.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 36/144 (25%), Positives = 66/144 (45%)
Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL 230
L++F H+ +V A + F ++S S D TC+ W + + LS++T I +A
Sbjct: 115 LRQFKGHSKAVHATSFLSDGFR--VLSGSDDLTCRVWDVASAVELSSITEHTDYIRAIAP 172
Query: 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290
D F GS Y +K + G ++T+ +H G V +++ + L+
Sbjct: 173 SKLNPDVFVTGS----YDHTVKMFD---VRSGNSVMTM--QH-GQPVECVLLYPSEALLV 222
Query: 291 AAEDGSVYIWEIEKR-QVVMVLKN 313
+ V +W++ K Q ++ LKN
Sbjct: 223 STGGRYVKVWDLLKGGQQLVSLKN 246
Score = 71 (30.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/74 (29%), Positives = 27/74 (36%)
Query: 56 HISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLAT-TADGSYLFTGGLSGNVYAISVPK 114
H T S VH+Y L S P+ N A + DG L G G + +
Sbjct: 52 HNYAVTASTRVHIYGLHSQEPIRNFTRFHDTAYGGSFRGDGKLLVAGSEEGLIRLFDIGG 111
Query: 115 GDILRSFSAHDKPV 128
LR F H K V
Sbjct: 112 RVSLRQFKGHSKAV 125
>MGI|MGI:1915086 [details] [associations]
symbol:Wdr83 "WD repeat domain containing 83" species:10090
"Mus musculus" [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1915086 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006397 GO:GO:0071013 GO:GO:0000375
GeneTree:ENSGT00700000104496 HOGENOM:HOG000091642 CTD:84292
HOVERGEN:HBG105288 KO:K13124 OrthoDB:EOG4ZCT4V OMA:CKQGAVR
EMBL:AY365434 EMBL:AK005790 EMBL:AK020654 EMBL:BC005587
EMBL:BC019369 EMBL:BC094624 IPI:IPI00118714 IPI:IPI00407931
IPI:IPI00624217 RefSeq:NP_080675.2 UniGene:Mm.334680
ProteinModelPortal:Q9DAJ4 SMR:Q9DAJ4 STRING:Q9DAJ4
PhosphoSite:Q9DAJ4 PRIDE:Q9DAJ4 Ensembl:ENSMUST00000093357
Ensembl:ENSMUST00000149050 GeneID:67836 KEGG:mmu:67836
UCSC:uc009mph.1 InParanoid:Q9DAJ4 NextBio:325661 Bgee:Q9DAJ4
CleanEx:MM_1500041N16RIK Genevestigator:Q9DAJ4
GermOnline:ENSMUSG00000005150 Uniprot:Q9DAJ4
Length = 315
Score = 95 (38.5 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVTFP 222
DK+ +L L ++V H + + CC+ ++ ++SCS D FW L+ G L+
Sbjct: 219 DKDTGEL-LGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGS 277
Query: 223 CAIMGLALDPTETDFFAAGSDGLIY 247
+ LA PTE A + Y
Sbjct: 278 NVVQSLAYHPTEPCLLTAMGGSIQY 302
Score = 53 (23.7 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK 132
V A + D S+L +GG V V G ++R F H V+ ++
Sbjct: 70 VLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQ 116
Score = 40 (19.1 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 12 LTSSPEGPITAYNPSSGAILAHFSG 36
LT + + +NP G +L +SG
Sbjct: 41 LTCGSDKTLKLWNPLRGTLLRTYSG 65
>TAIR|locus:2008159 [details] [associations]
symbol:RACK1B_AT "AT1G48630" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0048364 "root development"
evidence=IGI] [GO:0048367 "shoot system development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IGI]
[GO:0009845 "seed germination" evidence=IGI] [GO:0042254 "ribosome
biogenesis" evidence=IGI] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0042545 "cell wall modification"
evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0006417 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0042254 GO:GO:0048364 GO:GO:0009845 GO:GO:0004871
GO:GO:0071215 GO:GO:0048367 GO:GO:0022626 EMBL:AC073555 HSSP:P16649
HOGENOM:HOG000091643 KO:K14753 ProtClustDB:CLSN2682135
EMBL:AC074308 EMBL:AY059723 EMBL:AY091352 EMBL:AY087855 EMBL:Z26552
IPI:IPI00531991 RefSeq:NP_175296.1 UniGene:At.17343
ProteinModelPortal:Q9C4Z6 SMR:Q9C4Z6 IntAct:Q9C4Z6 STRING:Q9C4Z6
PaxDb:Q9C4Z6 PRIDE:Q9C4Z6 EnsemblPlants:AT1G48630.1 GeneID:841284
KEGG:ath:AT1G48630 GeneFarm:2979 TAIR:At1g48630 InParanoid:Q9C4Z6
OMA:NCKLRNT PhylomeDB:Q9C4Z6 Genevestigator:Q9C4Z6 Uniprot:Q9C4Z6
Length = 326
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 47/186 (25%), Positives = 82/186 (44%)
Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG-LALDPTETD 236
H + V+ + + I+S S D T K W L N +T+ + +A+ P +
Sbjct: 148 HKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSL 207
Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
+ G DG+I LL + +G++L +L G ++ + + + + AA + S
Sbjct: 208 CASGGKDGVI---LL-----WDLAEGKKLYSL---EAGSIIHSLCFSPNRYWLCAATENS 256
Query: 297 VYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRG---CGVVKTGKAGND--SG--GG 349
+ IW++E + VV LK +L + +TGIG C + GN SG G
Sbjct: 257 IRIWDLESKSVVEDLKVDLKAEAEKTDGSTGIGNKTKVIYCTSLNWSADGNTLFSGYTDG 316
Query: 350 VFEMYG 355
V ++G
Sbjct: 317 VIRVWG 322
>UNIPROTKB|F1MRM3 [details] [associations]
symbol:RRP9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005634 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GeneTree:ENSGT00550000075093
OMA:AAKDCTI EMBL:DAAA02054389 IPI:IPI00867384 UniGene:Bt.9939
ProteinModelPortal:F1MRM3 Ensembl:ENSBTAT00000000891 Uniprot:F1MRM3
Length = 475
Score = 112 (44.5 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 39/147 (26%), Positives = 69/147 (46%)
Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL 230
L F H D+V+ + G+ + S S D + K W + +++ T+ A+ L
Sbjct: 234 LYTFTGHRDAVSGLAFRRGTHQ--LYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDA 291
Query: 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290
E A G DG + + +S +LV H G + S+ ++NE +++VS
Sbjct: 292 LSRECCVTAGGRDGTVRVWKIPEES--------QLVFYG--HQGSIDSIQLINE-EHMVS 340
Query: 291 AAEDGSVYIWEIEKRQVVMVLKNELAG 317
A+DGSV +W + K++ + L+ E G
Sbjct: 341 GADDGSVALWGLSKKRP-LALQREAHG 366
Score = 45 (20.9 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 89 LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCL 131
+A ++DG YL +G S + L +F+ H VS L
Sbjct: 205 MAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGL 247
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 387 372 0.00087 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 614 (65 KB)
Total size of DFA: 242 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.48u 0.12s 31.60t Elapsed: 00:00:01
Total cpu time: 31.49u 0.12s 31.61t Elapsed: 00:00:01
Start: Fri May 10 00:32:56 2013 End: Fri May 10 00:32:57 2013