BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035621
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 170 LMLQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFP 222
+ L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P
Sbjct: 143 MCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVV 277
+ + + P AA D + L Y + + HK ++ AN
Sbjct: 198 VSFVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN------- 246
Query: 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 247 --FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-----TDVVISTA 289
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 113 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL------------PAHSDPVSAV 158
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNE 239
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 116 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 161
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNE 242
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 116 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 161
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNE 242
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 166 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 221 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 267
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 310
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 134 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 179
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 236
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNE 260
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 141 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 196 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 242
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 285
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 109 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 154
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 211
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNE 235
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 164 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 219 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 265
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 308
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 132 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 177
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNE 258
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 142 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 197 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 243
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 286
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 110 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 155
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNE 236
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 142 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 197 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 243
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 286
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 110 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 155
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNE 236
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 138 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 193 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 239
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 282
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 106 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 151
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 208
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNE 232
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 147 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 202 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 248
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 291
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 115 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 160
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 217
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNE 241
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 143 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 198 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 244
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 287
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 111 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 156
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 213
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNE 237
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 116 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 161
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 218
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNE 242
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 159 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 214 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 260
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 303
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 127 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 172
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 229
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNE 253
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 170 LMLQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFP 222
+ L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P
Sbjct: 143 MCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVV 277
+ + + P AA D + L Y + + HK ++ AN
Sbjct: 198 VSFVKFS--PNGKYILAATLDNDL--KLWDYSKGKCLKTYTGHKNEKYCIFAN------- 246
Query: 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 247 --FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-----TDVVISTA 289
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 113 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL------------PAHSDPVSAV 158
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D + +W+ K + + KNE
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNE 239
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
V+ + ++DG + +G G + + G R F H K V
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV----------------- 108
Query: 146 XXVIATVPIFQLVDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI----GSFNSIIISC 199
V + Q+V D K + L + K+ ++S + C+ S N II+SC
Sbjct: 109 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 200 SMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255
D K W L N H+ + + + + P + + G DG + +L
Sbjct: 169 GWDKLVKVWNLANCKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDG---QAML---- 218
Query: 256 RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315
+++G+ L TL G +++ + + + + AA S+ IW++E + +V LK E+
Sbjct: 219 -WDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 316 AGSISE 321
+ S+
Sbjct: 275 ISTSSK 280
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 113 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 158
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNE 239
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 113 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 158
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNE 239
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
V+ + ++DG + +G G + + G R F H K V
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV----------------- 131
Query: 146 XXVIATVPIFQLVDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI----GSFNSIIISC 199
V + Q+V D K + L + K+ ++S + C+ S N II+SC
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 200 SMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255
D K W L N H+ + + + + P + + G DG + +L
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDG---QAML---- 241
Query: 256 RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315
+++G+ L TL G +++ + + + + AA S+ IW++E + +V LK E+
Sbjct: 242 -WDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 316 AGSISE 321
+ S+
Sbjct: 298 ISTSSK 303
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
L+ AH+D V+A+ FN S+I+S S D C+ W +G L T+ P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
+ + P AA D + L Y + + HK ++ AN
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
+ GK +VS +ED VYIW ++ +++V L+ +++VI+T
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 185 ITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA- 240
+ CC +FN ++I+S S D + + W + G L T+ P +D +A
Sbjct: 113 VFCC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------PAHSDPVSAV 158
Query: 241 --GSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293
DG + Y GL + GQ L TL + + V V GK +++A
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 294 DGSVYIWEIEKRQVVMVL---KNE 314
D ++ +W+ K + + KNE
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNE 239
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG-LALDPTETD 236
H D V+ + + I+S S D T K W L N ST+ + +A+ P +
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
+ G DG++ LL + +G++L +L V+ + + + + AA +
Sbjct: 576 CASGGKDGVV---LL-----WDLAEGKKLYSLEANS---VIHALCFSPNRYWLCAATEHG 624
Query: 297 VYIWEIEKRQVVMVLKNEL 315
+ IW++E + +V LK +L
Sbjct: 625 IKIWDLESKSIVEDLKVDL 643
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 194 SIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK 252
S+++S S D T K W G T+ ++ ++ D + + +D I L
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI--KLWD 178
Query: 253 YQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
+Q G E + + HD V SV +M G ++VSA+ D ++ +WE++
Sbjct: 179 FQ-------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311
G L+TL HD V V+ + GK ++S A+D ++ +W+ + ++ + L
Sbjct: 328 GMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
D + SV +GK L + AED + IW+IE R++VM+L+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 106/257 (41%), Gaps = 58/257 (22%)
Query: 169 DLMLQKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT------------- 214
D+ L K + H T++ CC+ S + ++ + T + +R+ +G+
Sbjct: 54 DVELHKSLDH----TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK 109
Query: 215 ---HLSTVTFPCA---IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268
+L+T + P + I + P + F A G++ + + + ++R+ +V +
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIR-IWDIENRK-------IVMI 160
Query: 269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328
H+ + S+ G LVS + D +V IW++ Q + L + ++ + ++ G
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGD 218
Query: 329 GGSRGCG---------------VVKTGKAGNDSGGG--------VFEMYGEKLLDLSIKN 365
G G +V+ + N+SG G VF G+ ++ S+
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 366 TIELENVMTVAEKDRSK 382
+++L N+ K SK
Sbjct: 279 SVKLWNLQNANNKSDSK 295
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 8/158 (5%)
Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230
LQ F H +V A+ C N + + D + W + +G LS V + +
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 339
Query: 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290
P + + + KY + M K EL H V+S+ M +G + S
Sbjct: 340 SPHYKELISGHGFAQNQLVIWKYPT---MAKVAEL----KGHTSRVLSLTMSPDGATVAS 392
Query: 291 AAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328
AA D ++ +W + + E A + +I GI
Sbjct: 393 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQGI 430
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 8/158 (5%)
Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230
LQ F H +V A+ C N + + D + W + +G LS V + +
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328
Query: 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290
P + + + KY + M K EL H V+S+ M +G + S
Sbjct: 329 SPHYKELISGHGFAQNQLVIWKYPT---MAKVAEL----KGHTSRVLSLTMSPDGATVAS 381
Query: 291 AAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328
AA D ++ +W + + E A + +I GI
Sbjct: 382 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQGI 419
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 196 IISCSMDCTCKFWRLLNGTHLSTV--TFPCA----IMGLALDPTETDFFAAGS-DGLIYK 248
+I+ S D TC W + G +S FP ++ L+++ + F +GS D +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308
L+ SR V + H+G + SV +G+ + ++DG+ ++++ +
Sbjct: 233 WDLRITSRA--------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 309 MVLKNELAGSISEMVIATGIGGS 331
V E + +E+ I T + S
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFS 307
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331
H V + +++ G+N++SA+ DG++ +WE + + IA +G
Sbjct: 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD 239
Query: 332 RGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMT 374
R + T K N F YG+ ++ + I + NV +
Sbjct: 240 RQLHEISTSKKNNLE----FGTYGKYVIAGHVSGVITVHNVFS 278
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331
H V + +++ G+N++SA+ DG++ +WE + + IA +G
Sbjct: 177 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD 236
Query: 332 RGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMT 374
R + T K N F YG+ ++ + I + NV +
Sbjct: 237 RQLHEISTSKKNNLE----FGTYGKYVIAGHVSGVITVHNVFS 275
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 196 IISCSMDCTCKFWRLLNGTHLSTVTFPCA-IMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254
I+S S D W VT PC +M A P+ G D L +
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138
Query: 255 SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309
+ M ++ V + H + + N +++A+ DG+ +W++E Q++
Sbjct: 139 KNENMAAKKKSVAM---HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ 190
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230
LQ F H +V A+ C N + + D + W + +G LS V + +
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248
Query: 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290
P + + + KY + M K EL H V+S+ M +G + S
Sbjct: 249 SPHYKELISGHGFAQNQLVIWKYPT---MAKVAEL----KGHTSRVLSLTMSPDGATVAS 301
Query: 291 AAEDGSVYIWE 301
AA D ++ +W
Sbjct: 302 AAADETLRLWR 312
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213
+ +LVD HT D +L+ + H V I N I+SC D T + W NG
Sbjct: 206 LIKLVDXHTGD------VLRTYEGHESFVYCIKLLP---NGDIVSCGEDRTVRIWSKENG 256
Query: 214 THLSTVTFPCAIMGLALD-PTETDFFAAGSDGLI 246
+ +T P AI ++D + D SD L+
Sbjct: 257 SLKQVITLP-AISIWSVDCXSNGDIIVGSSDNLV 289
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 24/147 (16%)
Query: 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW------RLLNGTHLSTVTFPCA 224
++ AHN SV S N + + S D T K W + +G H V
Sbjct: 134 LVYNLQAHNASVWDAKVVSFSENKFL-TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAV 192
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284
+ + F + +DGLI H G L T H+ V + ++
Sbjct: 193 V-------DDGHFISCSNDGLI--------KLVDXHTGDVLRTYEG-HESFVYCIKLLPN 236
Query: 285 GKNLVSAAEDGSVYIWEIEKRQVVMVL 311
G ++VS ED +V IW E + V+
Sbjct: 237 G-DIVSCGEDRTVRIWSKENGSLKQVI 262
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 77 LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK 132
+HN + V LA DG ++ G + + GD+LR++ H+ V C+K
Sbjct: 182 IHN----DVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S+IIS S D T K W + G L+T V+ +
Sbjct: 101 QRFVGHKSDVMSVD--IDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVV 157
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D ++ K + Q + + H+ + ++ +G
Sbjct: 158 PNEKADDDSVTIISAGNDKMV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 208
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314
+ SA +DG + +W + ++ + L +
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S+IIS S D T K W + G L+T V+ +
Sbjct: 101 QRFVGHKSDVMSVD--IDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVV 157
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D ++ K + Q + + H+ + ++ +G
Sbjct: 158 PNEKADDDSVTIISAGNDKMV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 208
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVL 311
+ SA +DG + +W + ++ + L
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S+IIS S D T K W + G L+T V+ +
Sbjct: 95 QRFVGHKSDVMSVD--IDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVV 151
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D ++ K + Q + + H+ + ++ +G
Sbjct: 152 PNEKADDDSVTIISAGNDKMV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 202
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314
+ SA +DG + +W + ++ + L +
Sbjct: 203 TLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S+IIS S D T K W + G L+T V+ +
Sbjct: 101 QRFVGHKSDVMSVD--IDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVV 157
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D ++ K + Q + + H+ + ++ +G
Sbjct: 158 PNEKADDDSVTIISAGNDKMV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 208
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVL 311
+ SA +DG + +W + ++ + L
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S+IIS S D T K W + G L+T V+ +
Sbjct: 101 QRFVGHKSDVMSVD--IDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVV 157
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D ++ K + Q + + H+ + ++ +G
Sbjct: 158 PNEKADDDSVTIISAGNDKMV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 208
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVL 311
+ SA +DG + +W + ++ + L
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 197 ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI 246
IS SMD T + W L NG + T+ A++GL L ++ +A +DG I
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAADGSI 374
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316
H + S + +E K +SA+ D ++ IW++E +++ L+ A
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283
AI +A P T AAGS K +S + + +L+ + H+ V V N
Sbjct: 60 AIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFE-MDLLAIIEGHENEVKGVAWSN 117
Query: 284 EGKNLVSAAEDGSVYIWEIEK 304
+G L + + D SV+IWE ++
Sbjct: 118 DGYYLATCSRDKSVWIWETDE 138
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG 62
H LP + +SS + I ++ +G + S P T A P + +++ T
Sbjct: 90 HTLP---IAASSSLDAHIRLWDLENGKQIK--SIDAGPVDAWTLAFSP--DSQYLATGTH 142
Query: 63 SGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF 121
G V+++ + S +++ + + +A + DG YL +G + G + + G +L +
Sbjct: 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 122 SAHDKPVSCL 131
H P+ L
Sbjct: 203 EGHAMPIRSL 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 195 IIISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253
I S S+D + W L NG + ++ P LA P ++ + A G+ + G +
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGT----HVGKVNI 148
Query: 254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
+ K L T ++S+ +GK L S A DG + I++I +++ L+
Sbjct: 149 FGVESGKKEYSLDTRGK----FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314
GQ + H G V+ V ++G + +A+ D + +W++ Q + + +++
Sbjct: 75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD 127
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 271 RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308
HD +V ++ + ++G VS +D SV +W++ ++ V+
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCL 131
V L+ +DG+ +GG +V + + +L+S++AH V+C+
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322
+ L T + + V V ++E K ++ A++ G+V +WEI +++ ++V N+ A +
Sbjct: 84 ESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVELWEILEKESLLV--NKFAKYEHDD 140
Query: 323 VIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMT 374
++ T S G V SGG F + K+ DLS K ++ N +
Sbjct: 141 IVKTLSVFSDGTQAV--------SGGKDFSV---KVWDLSQKAVLKSYNAHS 181
>pdb|4G2C|A Chain A, Dyp2 From Amycolatopsis Sp. Atcc 39116
pdb|4G2C|B Chain B, Dyp2 From Amycolatopsis Sp. Atcc 39116
Length = 493
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 70 NLWS-STPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD 125
N W S PL + VP+P AP T GSY L NV + D+ AHD
Sbjct: 242 NDWDPSAPLEQVLVPDPAAPDPTVHFGSYFVFRKLEQNVRLFKEAERDL-----AHD 293
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST-------VTFPCAI 225
Q+FV H V ++ I S IIS S D T K W + G L+T V+ +
Sbjct: 101 QRFVGHKSDVXSVD--IDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVV 157
Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285
D +AG+D + K + Q + + H+ + ++ +G
Sbjct: 158 PNEKADDDSVTIISAGNDKXV-----KAWNLNQFQIEADFIG----HNSNINTLTASPDG 208
Query: 286 KNLVSAAEDGSVYIWEIEKRQVVMVL 311
+ SA +DG + +W + ++ L
Sbjct: 209 TLIASAGKDGEIXLWNLAAKKAXYTL 234
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG-SISEMVIATGIGG 330
H V+S+ + G+ L SA DG + W+++ ++ + L I E ++A G
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 359
Query: 331 SR----GCGVVKTGKAGNDSGGGV 350
G VK K G SG G
Sbjct: 360 DSLAEPGVFDVKFLKKGWRSGMGA 383
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG-SISEMVIATGIGG 330
H V+S+ + G+ L SA DG + W+++ ++ + L I E ++A G
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349
Query: 331 SR----GCGVVKTGKAGNDSGGGV 350
G VK K G SG G
Sbjct: 350 DSLAEPGVFDVKFLKKGWRSGMGA 373
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 178 HNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD 236
HN +V A+ C N + +MD FW G ++TV + L P +
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE 317
Query: 237 FFAAGSDGLIYKGLLKYQ-SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295
+ + G L + S + K ++ HD V+ + +G+ L +AA D
Sbjct: 318 IMS--THGFPDNNLSIWSYSSSGLTKQVDIPA----HDTRVLYSALSPDGRILSTAASDE 371
Query: 296 SVYIWEI 302
++ W +
Sbjct: 372 NLKFWRV 378
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 13/157 (8%)
Query: 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287
+ LDPT +D I G + + + KG ++ T H V + NEG
Sbjct: 28 IVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKKLYNEGYK 87
Query: 288 LVSAAEDGSVYIWEIEKRQVV---MVLKNELAGSISEMVIATGIGG---SRGCGVVKTGK 341
+ S Y EI + + V + KN + + E + + G VV+ +
Sbjct: 88 I-----HPSPYTLEIIQDKFVQKEFLKKNGI--PVPEYKLVKDLESDVREFGFPVVQKAR 140
Query: 342 AGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEK 378
G G GVF + EK L+ +IK LE + + ++
Sbjct: 141 KGGYDGRGVFIIKNEKDLENAIKGETYLEEFVEIEKE 177
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 271 RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309
HD +V +V +++ G VS ++D + +W++ +QVV+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL-AQQVVL 162
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308
+ KGQ+LV + N+H+ V+ ++ + + V+ E+ + + IE+ +++
Sbjct: 269 IFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEIL 318
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
EL++ + H+G V SV G L SA +DG V +W+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
EL++ + H+G V SV G L SA +DG V +W+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
EL++ + H+G V SV G L SA +DG V +W+
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 248 KGLLKYQSRQQMHKGQELVTLANR----HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
K LL + H + L +R H V V + N G VSA+ D S+ +W ++
Sbjct: 38 KTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ 97
Query: 304 KRQ 306
Q
Sbjct: 98 NGQ 100
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG 317
V M ++E K +VS + D ++ +W+IE Q + VL +A
Sbjct: 202 VRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316
H + S + +E K +SA+ D ++ IW++E ++ L+ A
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,464,749
Number of Sequences: 62578
Number of extensions: 470943
Number of successful extensions: 1552
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 227
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)