Query 035621
Match_columns 387
No_of_seqs 801 out of 2362
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 04:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.5E-51 3.3E-56 327.7 26.2 300 2-328 121-463 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-50 4E-55 325.3 21.4 275 2-301 181-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 9.6E-49 2.1E-53 311.8 22.0 277 2-301 163-479 (480)
4 KOG0286 G-protein beta subunit 100.0 9.3E-45 2E-49 279.3 29.6 272 2-301 61-343 (343)
5 KOG0315 G-protein beta subunit 100.0 9.2E-44 2E-48 267.8 30.1 282 9-318 11-303 (311)
6 KOG0279 G protein beta subunit 100.0 1.4E-42 3E-47 265.7 29.0 276 8-303 28-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-44 4.1E-49 290.7 19.4 266 35-328 172-442 (459)
8 KOG0284 Polyadenylation factor 100.0 5E-44 1.1E-48 287.0 15.7 277 1-303 101-380 (464)
9 KOG0279 G protein beta subunit 100.0 1.1E-41 2.5E-46 260.7 27.6 263 29-318 6-277 (315)
10 KOG0286 G-protein beta subunit 100.0 9.4E-41 2E-45 257.3 28.9 271 31-327 48-326 (343)
11 KOG0273 Beta-transducin family 100.0 4.3E-41 9.4E-46 274.9 27.5 274 2-303 241-523 (524)
12 KOG0319 WD40-repeat-containing 100.0 4E-41 8.7E-46 289.2 27.2 335 1-356 110-595 (775)
13 KOG0318 WD40 repeat stress pro 100.0 7.6E-40 1.7E-44 271.2 33.1 308 2-325 196-582 (603)
14 KOG0295 WD40 repeat-containing 100.0 3.7E-41 7.9E-46 266.9 24.0 275 3-302 115-405 (406)
15 KOG0285 Pleiotropic regulator 100.0 1.4E-40 3.1E-45 263.1 23.5 281 2-304 157-440 (460)
16 KOG0318 WD40 repeat stress pro 100.0 2.5E-39 5.4E-44 268.1 31.2 360 2-373 65-602 (603)
17 KOG0645 WD40 repeat protein [G 100.0 6.7E-39 1.5E-43 244.5 26.6 280 2-303 20-311 (312)
18 KOG0315 G-protein beta subunit 100.0 5.8E-39 1.3E-43 242.0 25.2 252 55-326 11-268 (311)
19 KOG0273 Beta-transducin family 100.0 5.6E-39 1.2E-43 262.6 26.8 296 2-328 184-505 (524)
20 KOG0263 Transcription initiati 100.0 5.1E-40 1.1E-44 284.9 21.1 269 2-308 384-654 (707)
21 KOG0281 Beta-TrCP (transducin 100.0 9.3E-41 2E-45 263.4 14.2 275 4-308 203-482 (499)
22 KOG0291 WD40-repeat-containing 100.0 9.3E-38 2E-42 269.3 31.0 303 2-322 313-631 (893)
23 KOG0278 Serine/threonine kinas 100.0 1.9E-39 4.1E-44 244.9 17.5 277 5-309 26-303 (334)
24 KOG0265 U5 snRNP-specific prot 100.0 3.7E-38 8E-43 243.8 24.7 272 2-301 53-336 (338)
25 KOG0282 mRNA splicing factor [ 100.0 1.2E-39 2.7E-44 267.3 16.5 273 2-301 220-503 (503)
26 cd00200 WD40 WD40 domain, foun 100.0 3.7E-37 8E-42 261.1 32.5 273 2-301 15-289 (289)
27 KOG0285 Pleiotropic regulator 100.0 1.8E-38 3.9E-43 251.2 21.2 256 28-312 141-398 (460)
28 KOG0319 WD40-repeat-containing 100.0 5.2E-38 1.1E-42 270.2 25.4 367 2-375 68-579 (775)
29 KOG0266 WD40 repeat-containing 100.0 1.4E-37 3.1E-42 276.0 29.2 275 2-303 165-454 (456)
30 KOG0296 Angio-associated migra 100.0 4.3E-37 9.4E-42 244.0 27.5 288 2-303 70-398 (399)
31 KOG0276 Vesicle coat complex C 100.0 7.6E-38 1.6E-42 264.5 23.5 284 2-311 19-306 (794)
32 KOG0295 WD40 repeat-containing 100.0 7.6E-38 1.6E-42 248.1 21.5 273 29-329 99-389 (406)
33 KOG0316 Conserved WD40 repeat- 100.0 9.2E-37 2E-41 228.4 24.3 274 30-331 9-285 (307)
34 KOG0643 Translation initiation 100.0 1.6E-36 3.5E-41 231.1 24.8 286 2-305 16-319 (327)
35 KOG0291 WD40-repeat-containing 100.0 5.8E-36 1.3E-40 258.3 30.9 284 3-313 272-560 (893)
36 PLN00181 protein SPA1-RELATED; 100.0 6.5E-36 1.4E-40 284.8 34.1 282 2-302 489-792 (793)
37 KOG0646 WD40 repeat protein [G 100.0 2.8E-36 6.2E-41 246.7 26.5 306 12-326 11-329 (476)
38 KOG0276 Vesicle coat complex C 100.0 1.3E-36 2.7E-41 257.1 24.4 266 32-323 7-276 (794)
39 KOG0284 Polyadenylation factor 100.0 2.1E-37 4.6E-42 249.1 18.1 274 37-338 95-380 (464)
40 KOG0293 WD40 repeat-containing 100.0 7.6E-37 1.6E-41 246.3 21.0 274 2-304 230-514 (519)
41 KOG0275 Conserved WD40 repeat- 100.0 4.5E-37 9.8E-42 240.7 18.4 272 3-301 220-507 (508)
42 KOG0292 Vesicle coat complex C 100.0 7.6E-36 1.6E-40 261.8 27.2 286 2-303 15-321 (1202)
43 KOG0645 WD40 repeat protein [G 100.0 1.9E-34 4.2E-39 220.2 29.2 270 29-327 5-291 (312)
44 KOG0263 Transcription initiati 100.0 4.8E-36 1E-40 260.4 22.8 224 13-254 426-651 (707)
45 KOG0316 Conserved WD40 repeat- 100.0 4.6E-35 9.9E-40 219.3 22.5 268 2-301 23-297 (307)
46 KOG0266 WD40 repeat-containing 100.0 2E-34 4.4E-39 256.0 30.6 265 33-324 153-430 (456)
47 KOG0265 U5 snRNP-specific prot 100.0 7.9E-35 1.7E-39 225.5 23.9 275 31-330 40-322 (338)
48 KOG0305 Anaphase promoting com 100.0 9.5E-35 2.1E-39 247.8 26.5 275 1-305 182-463 (484)
49 KOG0282 mRNA splicing factor [ 100.0 8.7E-36 1.9E-40 244.8 18.7 279 29-332 205-490 (503)
50 KOG0292 Vesicle coat complex C 100.0 5.7E-35 1.2E-39 256.3 24.9 283 33-341 4-324 (1202)
51 cd00200 WD40 WD40 domain, foun 100.0 3.4E-33 7.4E-38 236.8 33.7 269 31-327 2-272 (289)
52 KOG0296 Angio-associated migra 100.0 6.4E-34 1.4E-38 226.0 26.4 268 29-326 55-378 (399)
53 KOG1407 WD40 repeat protein [F 100.0 6.4E-34 1.4E-38 216.3 24.5 274 2-303 26-311 (313)
54 KOG0281 Beta-TrCP (transducin 100.0 1.6E-35 3.4E-40 234.0 16.1 268 38-342 197-481 (499)
55 KOG0289 mRNA splicing factor [ 100.0 1.9E-33 4E-38 228.2 25.5 273 5-302 228-505 (506)
56 KOG0640 mRNA cleavage stimulat 100.0 9E-34 2E-38 220.8 22.4 275 2-302 118-425 (430)
57 KOG0277 Peroxisomal targeting 100.0 4.7E-34 1E-38 216.2 20.1 277 2-302 14-308 (311)
58 KOG0310 Conserved WD40 repeat- 100.0 1.5E-33 3.3E-38 232.0 23.9 264 37-328 25-291 (487)
59 KOG0313 Microtubule binding pr 100.0 5.5E-33 1.2E-37 221.8 26.1 269 8-303 115-418 (423)
60 KOG0274 Cdc4 and related F-box 100.0 2.3E-33 5.1E-38 248.3 25.6 272 8-314 218-493 (537)
61 KOG0306 WD40-repeat-containing 100.0 3.9E-33 8.5E-38 240.8 25.8 277 2-308 379-669 (888)
62 PLN00181 protein SPA1-RELATED; 100.0 7.3E-32 1.6E-36 257.1 36.9 273 17-311 457-746 (793)
63 KOG0306 WD40-repeat-containing 100.0 2.1E-32 4.5E-37 236.3 28.5 295 10-328 337-646 (888)
64 KOG0313 Microtubule binding pr 100.0 7E-33 1.5E-37 221.2 23.7 273 37-325 104-398 (423)
65 KOG0275 Conserved WD40 repeat- 100.0 9.1E-33 2E-37 216.7 18.0 253 37-316 212-480 (508)
66 KOG0268 Sof1-like rRNA process 100.0 3.8E-33 8.3E-38 221.5 14.8 279 2-312 72-354 (433)
67 PTZ00421 coronin; Provisional 100.0 1.7E-30 3.6E-35 230.0 32.8 226 81-327 73-314 (493)
68 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-30 7.2E-35 201.7 30.6 277 29-331 5-290 (311)
69 KOG0300 WD40 repeat-containing 100.0 9.7E-32 2.1E-36 210.3 21.6 275 8-305 160-478 (481)
70 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-30 4.7E-35 202.7 29.0 276 2-305 20-305 (311)
71 KOG0288 WD40 repeat protein Ti 100.0 1.6E-32 3.5E-37 221.4 17.6 274 31-330 168-445 (459)
72 KOG0288 WD40 repeat protein Ti 100.0 1.3E-32 2.8E-37 222.0 16.8 270 2-301 181-459 (459)
73 KOG0283 WD40 repeat-containing 100.0 3.5E-32 7.5E-37 238.4 20.9 243 2-255 273-579 (712)
74 KOG1539 WD repeat protein [Gen 100.0 4.4E-31 9.6E-36 230.6 27.1 294 8-330 172-631 (910)
75 KOG0293 WD40 repeat-containing 100.0 2.4E-31 5.1E-36 214.8 23.3 268 30-326 216-492 (519)
76 KOG0277 Peroxisomal targeting 100.0 1.1E-31 2.4E-36 203.4 19.6 262 41-324 11-286 (311)
77 PTZ00421 coronin; Provisional 100.0 4.6E-30 1E-34 227.2 31.7 256 3-284 27-314 (493)
78 KOG0299 U3 snoRNP-associated p 100.0 5.9E-31 1.3E-35 215.2 23.4 278 31-329 135-438 (479)
79 PTZ00420 coronin; Provisional 100.0 1.8E-29 4E-34 224.3 34.6 248 59-328 49-318 (568)
80 KOG0294 WD40 repeat-containing 100.0 4.1E-30 8.8E-35 200.8 26.1 281 10-324 3-305 (362)
81 KOG0283 WD40 repeat-containing 100.0 1.5E-30 3.2E-35 228.2 25.9 249 30-306 258-579 (712)
82 KOG0310 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 213.4 24.2 273 2-304 32-310 (487)
83 PTZ00420 coronin; Provisional 100.0 1.8E-29 3.9E-34 224.4 31.7 248 14-285 50-318 (568)
84 KOG0268 Sof1-like rRNA process 100.0 1.5E-31 3.2E-36 212.5 16.0 265 31-325 59-324 (433)
85 KOG1408 WD40 repeat protein [F 100.0 1.9E-30 4.2E-35 223.3 23.7 307 2-326 330-693 (1080)
86 KOG1407 WD40 repeat protein [F 100.0 1.8E-29 4E-34 192.1 25.9 266 32-328 14-284 (313)
87 KOG0308 Conserved WD40 repeat- 100.0 5.9E-31 1.3E-35 223.9 18.6 273 6-305 35-329 (735)
88 KOG0647 mRNA export protein (c 100.0 7.8E-30 1.7E-34 198.1 22.9 262 2-291 33-311 (347)
89 KOG0278 Serine/threonine kinas 100.0 7.2E-31 1.6E-35 198.6 16.6 282 32-342 8-301 (334)
90 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.8E-28 1.3E-32 206.5 36.2 286 8-325 1-299 (300)
91 KOG1036 Mitotic spindle checkp 100.0 2.4E-29 5.2E-34 196.0 24.7 262 2-293 19-294 (323)
92 KOG0772 Uncharacterized conser 100.0 2.7E-30 5.8E-35 214.4 20.2 276 2-301 173-485 (641)
93 KOG0274 Cdc4 and related F-box 100.0 3.3E-29 7.2E-34 222.0 28.6 273 37-344 207-488 (537)
94 KOG0973 Histone transcription 100.0 1.7E-29 3.6E-34 227.3 24.9 281 2-308 19-360 (942)
95 KOG0641 WD40 repeat protein [G 100.0 9.8E-28 2.1E-32 179.3 28.7 278 2-303 38-349 (350)
96 KOG0299 U3 snoRNP-associated p 100.0 6.7E-29 1.5E-33 203.3 24.5 273 2-300 148-453 (479)
97 KOG0973 Histone transcription 100.0 7.9E-29 1.7E-33 223.0 25.4 282 37-345 12-362 (942)
98 KOG0640 mRNA cleavage stimulat 100.0 1.3E-29 2.8E-34 197.7 17.6 214 81-314 110-346 (430)
99 KOG0301 Phospholipase A2-activ 100.0 1.3E-28 2.8E-33 211.2 25.1 261 7-304 24-289 (745)
100 KOG2096 WD40 repeat protein [G 100.0 2.1E-28 4.5E-33 191.7 24.0 280 2-301 92-400 (420)
101 KOG0647 mRNA export protein (c 100.0 3.2E-28 6.9E-33 189.2 24.1 286 35-343 24-322 (347)
102 KOG0308 Conserved WD40 repeat- 100.0 8.9E-29 1.9E-33 210.8 22.2 290 5-312 82-402 (735)
103 KOG1036 Mitotic spindle checkp 100.0 2.3E-28 5.1E-33 190.5 22.4 262 37-327 12-285 (323)
104 KOG1332 Vesicle coat complex C 100.0 5.4E-29 1.2E-33 187.8 18.2 236 6-253 21-287 (299)
105 KOG0305 Anaphase promoting com 100.0 8.2E-29 1.8E-33 211.7 21.6 233 2-254 223-463 (484)
106 KOG0772 Uncharacterized conser 100.0 7.8E-28 1.7E-32 199.8 22.9 264 30-316 159-458 (641)
107 KOG0269 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 213.9 18.7 280 3-307 46-344 (839)
108 KOG2106 Uncharacterized conser 100.0 1E-26 2.2E-31 192.8 29.0 305 2-328 160-503 (626)
109 KOG0289 mRNA splicing factor [ 100.0 6.7E-28 1.5E-32 196.1 21.2 221 85-328 221-444 (506)
110 KOG0264 Nucleosome remodeling 100.0 4.1E-28 8.9E-33 198.5 20.1 249 4-303 132-404 (422)
111 KOG4283 Transcription-coupled 100.0 1.6E-27 3.4E-32 184.8 21.6 280 7-302 55-364 (397)
112 KOG0301 Phospholipase A2-activ 100.0 4E-27 8.8E-32 202.1 26.2 273 28-339 4-289 (745)
113 KOG2055 WD40 repeat protein [G 100.0 1.7E-27 3.7E-32 195.2 22.5 279 2-303 219-512 (514)
114 KOG0643 Translation initiation 100.0 9.1E-27 2E-31 178.1 24.6 229 76-329 3-244 (327)
115 KOG1274 WD40 repeat protein [G 100.0 7.3E-27 1.6E-31 206.6 26.0 273 2-300 19-297 (933)
116 KOG0639 Transducin-like enhanc 100.0 2.7E-27 5.8E-32 196.2 19.5 270 3-302 426-703 (705)
117 KOG1408 WD40 repeat protein [F 100.0 8.2E-27 1.8E-31 201.1 22.5 273 10-304 394-714 (1080)
118 KOG0641 WD40 repeat protein [G 100.0 1E-24 2.2E-29 163.2 30.3 240 37-304 31-304 (350)
119 KOG0294 WD40 repeat-containing 100.0 2E-26 4.3E-31 180.3 21.9 231 5-255 50-284 (362)
120 KOG1273 WD40 repeat protein [G 100.0 2.6E-26 5.6E-31 179.7 20.8 277 2-306 29-325 (405)
121 KOG0321 WD40 repeat-containing 100.0 2.6E-26 5.5E-31 195.5 22.4 280 8-305 64-393 (720)
122 KOG1332 Vesicle coat complex C 100.0 8.2E-27 1.8E-31 176.1 16.6 250 35-303 8-286 (299)
123 KOG4328 WD40 protein [Function 100.0 4.8E-26 1E-30 186.6 22.1 281 2-303 192-495 (498)
124 KOG1274 WD40 repeat protein [G 100.0 8.3E-26 1.8E-30 200.0 25.1 242 36-304 11-263 (933)
125 KOG0639 Transducin-like enhanc 100.0 8.6E-27 1.9E-31 193.2 17.8 258 37-325 418-683 (705)
126 KOG4378 Nuclear protein COP1 [ 99.9 6.6E-26 1.4E-30 187.7 22.1 283 18-327 12-304 (673)
127 KOG0650 WD40 repeat nucleolar 99.9 2.9E-26 6.4E-31 193.8 20.3 283 2-300 406-732 (733)
128 KOG0300 WD40 repeat-containing 99.9 4.8E-26 1E-30 178.6 20.0 270 29-326 139-454 (481)
129 KOG2048 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 186.1 30.1 276 2-304 31-320 (691)
130 KOG1063 RNA polymerase II elon 99.9 2.4E-25 5.1E-30 191.3 24.9 310 8-328 206-676 (764)
131 KOG0267 Microtubule severing p 99.9 1.4E-27 2.9E-32 206.0 11.0 257 6-295 2-260 (825)
132 KOG0264 Nucleosome remodeling 99.9 8.9E-26 1.9E-30 185.0 20.5 213 79-305 120-349 (422)
133 KOG0267 Microtubule severing p 99.9 1.9E-27 4.1E-32 205.1 11.2 220 7-244 39-260 (825)
134 KOG0269 WD40 repeat-containing 99.9 1.1E-26 2.3E-31 201.9 15.2 232 7-253 99-341 (839)
135 KOG0646 WD40 repeat protein [G 99.9 4.6E-26 9.9E-31 187.1 17.7 231 2-239 87-336 (476)
136 KOG1188 WD40 repeat protein [G 99.9 1.1E-25 2.5E-30 177.9 19.1 280 9-302 41-345 (376)
137 KOG2445 Nuclear pore complex c 99.9 1.9E-24 4.1E-29 168.7 24.4 268 35-313 10-331 (361)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-24 1.7E-28 180.9 30.8 253 2-283 36-300 (300)
139 KOG4328 WD40 protein [Function 99.9 9.6E-25 2.1E-29 179.0 22.1 282 23-322 171-469 (498)
140 KOG1539 WD repeat protein [Gen 99.9 1.6E-23 3.4E-28 183.8 31.0 357 6-374 122-607 (910)
141 KOG0302 Ribosome Assembly prot 99.9 1.5E-24 3.4E-29 173.7 21.7 225 7-245 164-432 (440)
142 KOG2048 WD40 repeat protein [G 99.9 1.8E-23 4E-28 179.5 29.7 306 2-329 75-530 (691)
143 KOG0270 WD40 repeat-containing 99.9 5.6E-25 1.2E-29 179.7 18.6 234 7-255 191-452 (463)
144 KOG2106 Uncharacterized conser 99.9 5.2E-23 1.1E-27 171.0 30.3 272 2-308 252-526 (626)
145 KOG4283 Transcription-coupled 99.9 1.1E-23 2.4E-28 163.7 23.8 271 35-327 40-346 (397)
146 KOG2096 WD40 repeat protein [G 99.9 7E-24 1.5E-28 166.5 22.6 284 31-334 79-391 (420)
147 KOG1538 Uncharacterized conser 99.9 4.4E-24 9.5E-29 183.2 21.0 274 2-305 18-295 (1081)
148 KOG4378 Nuclear protein COP1 [ 99.9 3.9E-24 8.5E-29 177.3 20.0 256 3-285 41-305 (673)
149 KOG0270 WD40 repeat-containing 99.9 2.7E-23 5.7E-28 170.0 22.0 283 4-309 133-455 (463)
150 KOG0302 Ribosome Assembly prot 99.9 9.3E-24 2E-28 169.2 18.2 208 82-305 150-380 (440)
151 KOG2919 Guanine nucleotide-bin 99.9 8.1E-23 1.7E-27 160.8 23.0 270 2-294 55-361 (406)
152 KOG1273 WD40 repeat protein [G 99.9 5.7E-23 1.2E-27 161.1 21.9 278 41-341 26-325 (405)
153 KOG0307 Vesicle coat complex C 99.9 2.8E-24 6E-29 195.0 15.9 239 2-255 70-330 (1049)
154 KOG2445 Nuclear pore complex c 99.9 2.9E-22 6.2E-27 156.7 23.9 214 82-304 12-257 (361)
155 KOG2055 WD40 repeat protein [G 99.9 2.9E-23 6.2E-28 170.6 17.8 238 2-252 263-512 (514)
156 KOG1034 Transcriptional repres 99.9 4.3E-23 9.3E-28 162.6 17.9 285 9-303 56-383 (385)
157 KOG0321 WD40 repeat-containing 99.9 5.7E-23 1.2E-27 175.3 20.0 263 56-328 66-372 (720)
158 KOG2919 Guanine nucleotide-bin 99.9 1.5E-22 3.2E-27 159.4 20.3 269 41-328 52-352 (406)
159 KOG1063 RNA polymerase II elon 99.9 6.1E-22 1.3E-26 170.6 25.9 289 3-303 21-391 (764)
160 KOG1034 Transcriptional repres 99.9 1.3E-23 2.8E-28 165.5 13.5 240 8-252 105-383 (385)
161 KOG0307 Vesicle coat complex C 99.9 1.6E-23 3.5E-28 190.0 15.0 250 62-331 37-311 (1049)
162 KOG0649 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 142.2 27.3 262 3-300 17-313 (325)
163 KOG2110 Uncharacterized conser 99.9 6.6E-20 1.4E-24 147.1 30.3 291 2-314 11-343 (391)
164 KOG0650 WD40 repeat nucleolar 99.9 2.5E-22 5.5E-27 170.2 17.4 242 32-301 394-678 (733)
165 KOG1445 Tumor-specific antigen 99.9 1.9E-21 4.2E-26 166.3 20.9 193 127-332 629-837 (1012)
166 KOG1009 Chromatin assembly com 99.9 1.5E-21 3.3E-26 158.1 18.3 255 37-308 12-377 (434)
167 KOG1517 Guanine nucleotide bin 99.9 6.5E-21 1.4E-25 171.8 23.5 289 2-306 1070-1384(1387)
168 COG2319 FOG: WD40 repeat [Gene 99.9 8.2E-19 1.8E-23 157.6 36.3 299 2-326 71-380 (466)
169 KOG0642 Cell-cycle nuclear pro 99.9 7.1E-22 1.5E-26 166.5 13.7 257 32-315 288-573 (577)
170 KOG4227 WD40 repeat protein [G 99.9 6.7E-20 1.4E-24 148.3 21.0 290 2-303 62-387 (609)
171 KOG1963 WD40 repeat protein [G 99.9 3.3E-19 7.1E-24 158.2 26.4 297 3-312 23-384 (792)
172 KOG0290 Conserved WD40 repeat- 99.9 3.1E-19 6.7E-24 138.8 22.9 283 29-335 36-354 (364)
173 KOG1587 Cytoplasmic dynein int 99.9 1.1E-19 2.5E-24 160.4 23.4 271 18-305 222-518 (555)
174 KOG1007 WD repeat protein TSSC 99.9 4.4E-20 9.4E-25 143.4 17.5 263 3-304 70-362 (370)
175 KOG1272 WD40-repeat-containing 99.9 4E-21 8.6E-26 158.3 12.2 271 2-299 135-405 (545)
176 PRK11028 6-phosphogluconolacto 99.9 3.7E-18 8.1E-23 147.3 31.3 274 11-303 5-304 (330)
177 COG2319 FOG: WD40 repeat [Gene 99.9 1.4E-17 2.9E-22 149.7 35.1 275 2-304 161-443 (466)
178 KOG0290 Conserved WD40 repeat- 99.8 1.1E-18 2.4E-23 135.8 23.0 271 8-293 59-356 (364)
179 KOG0322 G-protein beta subunit 99.8 4.7E-20 1E-24 141.4 15.2 254 30-302 6-322 (323)
180 KOG0322 G-protein beta subunit 99.8 6.2E-20 1.3E-24 140.7 15.6 232 4-251 22-322 (323)
181 KOG1524 WD40 repeat-containing 99.8 2.2E-19 4.7E-24 150.9 18.7 206 56-300 77-283 (737)
182 KOG0303 Actin-binding protein 99.8 1.9E-19 4.1E-24 145.6 17.1 207 120-343 76-287 (472)
183 KOG1963 WD40 repeat protein [G 99.8 4E-18 8.6E-23 151.4 26.3 309 2-324 211-559 (792)
184 KOG0303 Actin-binding protein 99.8 2.2E-18 4.9E-23 139.5 22.6 226 60-307 53-298 (472)
185 KOG1538 Uncharacterized conser 99.8 5.2E-18 1.1E-22 146.4 24.6 225 2-251 59-292 (1081)
186 KOG0771 Prolactin regulatory e 99.8 4.7E-19 1E-23 144.7 15.4 197 87-304 148-355 (398)
187 KOG0649 WD40 repeat protein [G 99.8 4.7E-18 1E-22 129.0 19.6 230 85-324 12-254 (325)
188 KOG0642 Cell-cycle nuclear pro 99.8 2.9E-19 6.3E-24 150.9 14.0 241 82-330 293-545 (577)
189 KOG1007 WD repeat protein TSSC 99.8 1.6E-18 3.5E-23 134.7 16.8 227 62-304 38-290 (370)
190 PF02239 Cytochrom_D1: Cytochr 99.8 3.7E-16 8E-21 134.5 32.8 287 9-323 6-364 (369)
191 KOG1524 WD40 repeat-containing 99.8 9.7E-19 2.1E-23 147.0 16.2 207 9-249 76-283 (737)
192 KOG1188 WD40 repeat protein [G 99.8 1.3E-18 2.7E-23 138.4 16.0 200 96-313 41-252 (376)
193 KOG2111 Uncharacterized conser 99.8 2E-16 4.3E-21 125.0 28.0 234 2-255 11-259 (346)
194 KOG1009 Chromatin assembly com 99.8 5.1E-18 1.1E-22 137.9 19.4 247 3-254 20-374 (434)
195 KOG0644 Uncharacterized conser 99.8 4.4E-19 9.6E-24 156.4 13.7 274 3-312 197-477 (1113)
196 KOG1523 Actin-related protein 99.8 7.9E-18 1.7E-22 132.8 19.2 214 82-306 9-239 (361)
197 PRK01742 tolB translocation pr 99.8 1.4E-17 3.1E-22 148.1 22.5 234 62-326 182-425 (429)
198 KOG4227 WD40 repeat protein [G 99.8 4E-17 8.6E-22 132.4 22.6 248 33-304 51-323 (609)
199 KOG2110 Uncharacterized conser 99.8 2.3E-16 5E-21 127.0 26.1 222 10-253 58-331 (391)
200 KOG1334 WD40 repeat protein [G 99.8 2.1E-18 4.5E-23 143.3 14.8 294 31-339 135-467 (559)
201 PRK11028 6-phosphogluconolacto 99.8 1.4E-16 3.1E-21 137.5 27.1 233 60-305 8-260 (330)
202 PRK01742 tolB translocation pr 99.8 2.1E-17 4.6E-22 146.9 21.0 240 17-284 183-426 (429)
203 KOG1587 Cytoplasmic dynein int 99.8 4.4E-17 9.4E-22 144.2 22.4 236 63-307 221-476 (555)
204 KOG1240 Protein kinase contain 99.8 5.5E-17 1.2E-21 149.0 22.8 281 5-301 1058-1431(1431)
205 KOG1334 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 140.7 15.0 287 2-307 148-470 (559)
206 KOG4497 Uncharacterized conser 99.8 9.1E-17 2E-21 127.4 20.3 306 2-327 14-413 (447)
207 KOG1523 Actin-related protein 99.8 6.2E-17 1.3E-21 127.8 18.9 225 2-232 16-259 (361)
208 KOG1445 Tumor-specific antigen 99.8 2.4E-17 5.2E-22 141.6 17.4 228 60-307 599-848 (1012)
209 KOG0771 Prolactin regulatory e 99.8 1.3E-17 2.8E-22 136.4 14.2 183 129-330 148-338 (398)
210 KOG2139 WD40 repeat protein [G 99.8 6.7E-16 1.5E-20 124.1 23.6 276 2-303 104-431 (445)
211 KOG1272 WD40-repeat-containing 99.8 2E-18 4.3E-23 142.6 8.9 203 84-313 130-333 (545)
212 KOG0644 Uncharacterized conser 99.8 3.5E-18 7.7E-23 150.8 10.7 251 30-313 182-436 (1113)
213 KOG3881 Uncharacterized conser 99.8 2.8E-16 6E-21 127.4 20.4 257 9-326 70-341 (412)
214 KOG1310 WD40 repeat protein [G 99.7 3.2E-17 7E-22 138.4 14.4 247 30-312 42-312 (758)
215 PRK04922 tolB translocation pr 99.7 1.3E-15 2.9E-20 135.8 25.4 222 63-312 183-419 (433)
216 KOG1517 Guanine nucleotide bin 99.7 5.1E-16 1.1E-20 140.7 22.6 264 40-326 1066-1361(1387)
217 KOG1310 WD40 repeat protein [G 99.7 4.2E-16 9E-21 131.8 20.3 207 2-212 56-304 (758)
218 PRK03629 tolB translocation pr 99.7 2.9E-15 6.3E-20 133.0 27.1 235 63-326 178-427 (429)
219 PRK03629 tolB translocation pr 99.7 6.7E-15 1.4E-19 130.7 27.4 238 19-283 180-427 (429)
220 KOG2139 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 116.0 26.7 246 40-308 100-388 (445)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 4.1E-16 8.8E-21 131.5 15.5 206 93-309 183-458 (636)
222 KOG2394 WD40 protein DMR-N9 [G 99.7 9E-15 1.9E-19 123.5 23.5 221 86-326 126-384 (636)
223 PRK05137 tolB translocation pr 99.7 1.8E-14 4E-19 128.7 26.4 218 63-307 181-416 (435)
224 PRK02889 tolB translocation pr 99.7 1.5E-14 3.3E-19 128.6 25.2 224 63-312 175-411 (427)
225 KOG4497 Uncharacterized conser 99.7 2.4E-14 5.2E-19 113.9 23.3 279 2-296 54-425 (447)
226 KOG2321 WD40 repeat protein [G 99.7 8.4E-15 1.8E-19 124.7 22.0 277 2-304 57-344 (703)
227 KOG2321 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 125.7 19.6 230 76-330 44-327 (703)
228 PRK04922 tolB translocation pr 99.7 3.1E-14 6.7E-19 127.1 25.1 237 18-283 184-432 (433)
229 KOG2111 Uncharacterized conser 99.7 1.5E-13 3.2E-18 108.9 25.7 173 18-212 75-257 (346)
230 KOG3881 Uncharacterized conser 99.7 4.1E-15 8.8E-20 120.8 17.4 208 9-234 116-343 (412)
231 PF08662 eIF2A: Eukaryotic tra 99.7 1.5E-14 3.3E-19 113.3 19.8 157 129-312 9-187 (194)
232 KOG1240 Protein kinase contain 99.7 1.1E-14 2.4E-19 134.2 21.3 222 79-314 1044-1284(1431)
233 PRK05137 tolB translocation pr 99.7 6.7E-14 1.5E-18 125.1 26.2 217 18-253 182-413 (435)
234 PF10282 Lactonase: Lactonase, 99.7 3.2E-12 6.9E-17 110.5 35.7 299 11-324 2-345 (345)
235 PRK02889 tolB translocation pr 99.7 9.1E-14 2E-18 123.6 25.4 240 18-284 176-425 (427)
236 KOG0280 Uncharacterized conser 99.7 3.3E-14 7.1E-19 111.4 19.1 275 16-305 44-335 (339)
237 PF02239 Cytochrom_D1: Cytochr 99.7 3.4E-13 7.4E-18 116.3 27.2 254 60-328 12-327 (369)
238 TIGR02658 TTQ_MADH_Hv methylam 99.6 6.4E-12 1.4E-16 106.0 33.0 269 18-313 27-340 (352)
239 PF08662 eIF2A: Eukaryotic tra 99.6 7.6E-14 1.7E-18 109.4 19.1 149 87-253 9-180 (194)
240 KOG1409 Uncharacterized conser 99.6 2E-14 4.3E-19 115.0 15.1 281 2-304 74-395 (404)
241 TIGR02800 propeller_TolB tol-p 99.6 4.5E-13 9.8E-18 119.9 25.4 224 62-313 168-406 (417)
242 TIGR03300 assembly_YfgL outer 99.6 2.1E-12 4.6E-17 113.7 28.6 275 7-315 64-350 (377)
243 KOG2315 Predicted translation 99.6 2.1E-12 4.6E-17 110.0 25.8 287 1-314 39-355 (566)
244 KOG0974 WD-repeat protein WDR6 99.6 2.3E-12 4.9E-17 117.4 27.0 186 6-212 97-289 (967)
245 PRK00178 tolB translocation pr 99.6 3.2E-12 7E-17 114.5 26.5 220 65-312 180-414 (430)
246 KOG2314 Translation initiation 99.6 3.9E-12 8.4E-17 108.3 24.6 306 1-332 215-553 (698)
247 PRK04792 tolB translocation pr 99.6 3.5E-12 7.6E-17 113.9 25.8 233 64-325 198-445 (448)
248 KOG1354 Serine/threonine prote 99.6 1.1E-12 2.3E-17 105.3 19.6 247 2-254 31-361 (433)
249 KOG0974 WD-repeat protein WDR6 99.6 3E-13 6.5E-18 123.0 18.3 198 83-306 87-291 (967)
250 TIGR02800 propeller_TolB tol-p 99.6 3.8E-12 8.2E-17 114.0 25.3 208 18-244 170-386 (417)
251 KOG4547 WD40 repeat-containing 99.6 2.6E-12 5.7E-17 110.2 22.6 211 5-253 2-221 (541)
252 KOG2315 Predicted translation 99.5 7.7E-12 1.7E-16 106.7 24.5 273 2-305 79-392 (566)
253 KOG1064 RAVE (regulator of V-A 99.5 7.2E-14 1.6E-18 133.4 12.9 192 35-255 2205-2401(2439)
254 PRK01029 tolB translocation pr 99.5 1.1E-11 2.3E-16 110.0 25.5 245 18-284 165-425 (428)
255 KOG2041 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 114.6 19.0 280 2-299 20-333 (1189)
256 PRK00178 tolB translocation pr 99.5 2.5E-11 5.5E-16 108.8 27.2 215 19-252 180-406 (430)
257 COG5354 Uncharacterized protei 99.5 3.7E-11 7.9E-16 101.5 25.3 276 2-308 77-400 (561)
258 PRK01029 tolB translocation pr 99.5 3.9E-11 8.5E-16 106.3 27.1 228 63-312 164-412 (428)
259 PF10282 Lactonase: Lactonase, 99.5 3.6E-10 7.9E-15 97.8 31.7 239 2-253 42-323 (345)
260 PRK04792 tolB translocation pr 99.5 3.9E-11 8.4E-16 107.3 26.0 236 19-283 199-446 (448)
261 KOG2314 Translation initiation 99.5 2.8E-11 6.2E-16 103.2 23.2 264 2-294 255-558 (698)
262 COG5354 Uncharacterized protei 99.5 1.1E-10 2.5E-15 98.6 25.3 281 2-313 38-359 (561)
263 COG2706 3-carboxymuconate cycl 99.5 2.6E-09 5.7E-14 87.0 31.8 291 17-324 15-344 (346)
264 KOG1354 Serine/threonine prote 99.5 3E-12 6.5E-17 102.7 14.6 228 83-314 25-313 (433)
265 KOG1912 WD40 repeat protein [G 99.4 3.5E-11 7.5E-16 106.7 19.5 298 2-308 21-369 (1062)
266 COG2706 3-carboxymuconate cycl 99.4 2.1E-09 4.5E-14 87.6 27.6 230 63-304 15-275 (346)
267 KOG4547 WD40 repeat-containing 99.4 9.8E-11 2.1E-15 100.7 21.1 187 93-304 3-221 (541)
268 KOG1409 Uncharacterized conser 99.4 2.5E-11 5.4E-16 97.6 16.3 250 29-307 15-274 (404)
269 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.9E-09 4.2E-14 91.1 28.5 237 4-254 53-332 (352)
270 TIGR03300 assembly_YfgL outer 99.4 4.3E-10 9.4E-15 99.1 25.5 257 7-300 104-376 (377)
271 COG4946 Uncharacterized protei 99.4 4.4E-10 9.5E-15 94.4 23.5 216 5-238 275-504 (668)
272 KOG1064 RAVE (regulator of V-A 99.4 3.5E-12 7.7E-17 122.2 12.7 196 83-315 2208-2410(2439)
273 KOG0309 Conserved WD40 repeat- 99.4 2.5E-12 5.5E-17 113.1 10.3 288 2-305 30-341 (1081)
274 KOG4532 WD40-like repeat conta 99.4 3.2E-10 6.9E-15 88.3 19.9 224 9-242 85-322 (344)
275 KOG1912 WD40 repeat protein [G 99.4 2.9E-10 6.3E-15 101.0 21.9 301 9-322 80-473 (1062)
276 PRK11138 outer membrane biogen 99.3 3.5E-09 7.6E-14 93.7 28.1 281 7-313 68-363 (394)
277 KOG0280 Uncharacterized conser 99.3 8.1E-10 1.8E-14 87.2 20.4 224 62-306 44-287 (339)
278 KOG4532 WD40-like repeat conta 99.3 8.2E-10 1.8E-14 86.1 19.7 248 42-306 71-334 (344)
279 PLN02919 haloacid dehalogenase 99.3 1E-08 2.2E-13 100.4 30.2 243 60-307 586-892 (1057)
280 PF04762 IKI3: IKI3 family; I 99.3 2.2E-08 4.8E-13 96.3 31.4 289 2-305 126-521 (928)
281 KOG3914 WD repeat protein WDR4 99.3 6.5E-11 1.4E-15 97.2 12.2 167 128-312 65-232 (390)
282 PF13360 PQQ_2: PQQ-like domai 99.3 6.2E-09 1.3E-13 85.7 24.3 218 63-310 2-237 (238)
283 PF04762 IKI3: IKI3 family; I 99.3 7.1E-09 1.5E-13 99.6 27.7 284 3-304 82-457 (928)
284 KOG2695 WD40 repeat protein [G 99.3 3.7E-11 8E-16 96.7 9.4 156 58-224 228-389 (425)
285 PF08450 SGL: SMP-30/Gluconola 99.3 9.7E-08 2.1E-12 78.8 30.1 215 88-324 4-232 (246)
286 PLN02919 haloacid dehalogenase 99.2 1.9E-08 4.2E-13 98.5 29.2 244 2-255 573-891 (1057)
287 PF15492 Nbas_N: Neuroblastoma 99.2 2.2E-08 4.8E-13 79.3 24.0 212 89-314 3-270 (282)
288 KOG4190 Uncharacterized conser 99.2 1.7E-10 3.7E-15 98.8 13.0 267 7-299 746-1032(1034)
289 KOG3914 WD repeat protein WDR4 99.2 2.9E-10 6.3E-15 93.4 13.7 150 2-156 68-224 (390)
290 KOG2041 WD40 repeat protein [G 99.2 1.4E-09 3E-14 96.1 18.2 255 40-325 16-317 (1189)
291 PRK04043 tolB translocation pr 99.2 3.2E-08 6.9E-13 87.4 26.4 215 63-307 168-404 (419)
292 KOG0882 Cyclophilin-related pe 99.2 6.4E-10 1.4E-14 92.8 14.0 291 8-322 20-324 (558)
293 COG4946 Uncharacterized protei 99.2 9.5E-08 2.1E-12 80.8 26.0 199 86-311 269-485 (668)
294 PRK11138 outer membrane biogen 99.2 3.7E-08 8E-13 87.3 25.5 258 8-302 120-393 (394)
295 KOG4714 Nucleoporin [Nuclear s 99.2 1.9E-09 4.1E-14 83.7 14.0 188 10-212 49-255 (319)
296 KOG0309 Conserved WD40 repeat- 99.2 2.9E-10 6.2E-15 100.5 10.6 221 79-320 20-249 (1081)
297 COG5170 CDC55 Serine/threonine 99.1 1.3E-09 2.7E-14 86.9 13.0 229 82-314 25-321 (460)
298 KOG1275 PAB-dependent poly(A) 99.1 2.1E-09 4.5E-14 97.4 15.0 185 94-301 146-340 (1118)
299 PRK04043 tolB translocation pr 99.1 1.3E-07 2.8E-12 83.6 25.8 203 18-242 169-387 (419)
300 PF08450 SGL: SMP-30/Gluconola 99.1 2.2E-07 4.9E-12 76.7 25.3 220 3-241 6-244 (246)
301 COG5170 CDC55 Serine/threonine 99.1 7.3E-09 1.6E-13 82.6 14.3 279 2-303 32-367 (460)
302 KOG4190 Uncharacterized conser 99.1 6E-10 1.3E-14 95.5 8.5 183 118-313 728-916 (1034)
303 PF13360 PQQ_2: PQQ-like domai 99.1 1.2E-07 2.7E-12 77.9 21.9 216 17-255 2-233 (238)
304 cd00216 PQQ_DH Dehydrogenases 99.0 1.6E-06 3.5E-11 78.8 29.7 286 8-314 61-435 (488)
305 PF15492 Nbas_N: Neuroblastoma 99.0 1E-06 2.2E-11 70.2 24.2 226 2-255 3-262 (282)
306 PRK02888 nitrous-oxide reducta 99.0 1.5E-06 3.2E-11 78.1 28.0 201 92-314 201-425 (635)
307 KOG4649 PQQ (pyrrolo-quinoline 99.0 2E-06 4.3E-11 67.5 25.0 194 8-225 23-220 (354)
308 KOG0882 Cyclophilin-related pe 99.0 2.8E-09 6.1E-14 89.0 9.3 223 79-313 5-241 (558)
309 KOG2695 WD40 repeat protein [G 99.0 5.9E-09 1.3E-13 84.3 10.1 131 178-316 251-389 (425)
310 PF07433 DUF1513: Protein of u 99.0 1.5E-06 3.3E-11 71.2 24.1 214 83-313 4-257 (305)
311 KOG3617 WD40 and TPR repeat-co 99.0 1.1E-07 2.4E-12 86.1 18.5 107 1-113 20-131 (1416)
312 KOG2114 Vacuolar assembly/sort 98.9 3.3E-07 7.1E-12 83.1 20.0 206 89-312 29-252 (933)
313 KOG4714 Nucleoporin [Nuclear s 98.9 9E-09 2E-13 80.0 8.4 150 91-253 97-255 (319)
314 KOG3617 WD40 and TPR repeat-co 98.9 1E-07 2.2E-12 86.3 16.0 111 44-155 21-131 (1416)
315 PF00400 WD40: WD domain, G-be 98.9 5.5E-09 1.2E-13 58.6 5.4 39 115-153 1-39 (39)
316 KOG2066 Vacuolar assembly/sort 98.9 2.5E-07 5.4E-12 83.3 17.9 156 125-315 39-199 (846)
317 PF07433 DUF1513: Protein of u 98.8 1.5E-05 3.3E-10 65.5 25.7 234 2-247 10-280 (305)
318 PF00400 WD40: WD domain, G-be 98.8 1.9E-08 4E-13 56.4 6.1 36 266-301 4-39 (39)
319 KOG1275 PAB-dependent poly(A) 98.8 1.2E-07 2.7E-12 86.3 13.8 175 60-252 153-342 (1118)
320 PF06433 Me-amine-dh_H: Methyl 98.8 2.2E-05 4.9E-10 65.3 24.8 273 18-314 17-331 (342)
321 KOG1645 RING-finger-containing 98.8 1.2E-06 2.6E-11 72.7 17.1 240 66-325 175-439 (463)
322 KOG2114 Vacuolar assembly/sort 98.7 6.6E-06 1.4E-10 75.1 22.6 203 3-220 30-252 (933)
323 cd00216 PQQ_DH Dehydrogenases 98.7 2.6E-05 5.7E-10 71.0 26.4 230 9-256 111-428 (488)
324 KOG1832 HIV-1 Vpr-binding prot 98.7 9.9E-09 2.1E-13 93.0 3.9 195 82-313 1100-1301(1516)
325 PF04053 Coatomer_WDAD: Coatom 98.7 7.7E-06 1.7E-10 72.3 21.6 226 2-253 38-263 (443)
326 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.7 0.00026 5.6E-09 64.9 31.8 115 8-122 69-198 (527)
327 KOG3621 WD40 repeat-containing 98.7 9.2E-06 2E-10 72.6 20.9 128 3-134 40-179 (726)
328 KOG4649 PQQ (pyrrolo-quinoline 98.7 4.3E-05 9.3E-10 60.2 22.1 103 8-115 63-167 (354)
329 KOG1645 RING-finger-containing 98.7 1.9E-06 4.1E-11 71.6 15.4 234 2-252 199-461 (463)
330 KOG2066 Vacuolar assembly/sort 98.6 4.8E-06 1E-10 75.3 18.5 181 40-252 41-233 (846)
331 PRK02888 nitrous-oxide reducta 98.6 2.2E-05 4.7E-10 70.8 22.4 218 60-292 211-450 (635)
332 KOG1832 HIV-1 Vpr-binding prot 98.6 1.7E-08 3.6E-13 91.6 2.4 208 2-240 1107-1319(1516)
333 KOG1920 IkappaB kinase complex 98.6 5.1E-05 1.1E-09 72.1 23.4 212 84-305 69-324 (1265)
334 PF00930 DPPIV_N: Dipeptidyl p 98.5 7.8E-05 1.7E-09 65.1 23.3 262 5-292 1-346 (353)
335 COG0823 TolB Periplasmic compo 98.5 2.9E-05 6.2E-10 68.5 20.2 208 19-243 174-390 (425)
336 KOG1008 Uncharacterized conser 98.5 5.6E-08 1.2E-12 85.2 3.2 188 8-212 70-276 (783)
337 PF14583 Pectate_lyase22: Olig 98.5 0.00057 1.2E-08 58.3 25.7 282 3-302 42-380 (386)
338 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00059 1.3E-08 60.5 27.0 258 2-314 34-325 (410)
339 PF06433 Me-amine-dh_H: Methyl 98.5 0.00013 2.8E-09 60.9 21.1 238 3-255 42-323 (342)
340 PF11768 DUF3312: Protein of u 98.4 8E-06 1.7E-10 71.7 14.3 87 67-155 239-329 (545)
341 PF11768 DUF3312: Protein of u 98.4 0.00039 8.5E-09 61.5 24.2 92 206-308 239-334 (545)
342 PF08553 VID27: VID27 cytoplas 98.4 2.3E-05 5E-10 73.2 17.3 145 8-154 493-646 (794)
343 PF03178 CPSF_A: CPSF A subuni 98.4 0.00023 5E-09 61.3 22.6 217 65-300 3-262 (321)
344 KOG1920 IkappaB kinase complex 98.4 0.00014 3E-09 69.4 21.7 232 3-252 75-365 (1265)
345 PF06977 SdiA-regulated: SdiA- 98.4 7.7E-05 1.7E-09 60.5 17.7 203 33-249 16-247 (248)
346 PF00780 CNH: CNH domain; Int 98.4 0.00075 1.6E-08 56.8 24.4 234 3-257 2-260 (275)
347 KOG1008 Uncharacterized conser 98.4 1.8E-07 3.9E-12 82.1 2.1 205 85-303 58-275 (783)
348 PF03178 CPSF_A: CPSF A subuni 98.3 0.00029 6.3E-09 60.7 20.5 214 18-249 2-262 (321)
349 COG3386 Gluconolactonase [Carb 98.3 0.0014 3.1E-08 55.2 23.6 222 4-242 32-275 (307)
350 COG3391 Uncharacterized conser 98.3 0.0012 2.6E-08 58.2 24.3 200 41-254 76-285 (381)
351 PF00780 CNH: CNH domain; Int 98.3 0.00087 1.9E-08 56.4 22.7 154 93-254 5-167 (275)
352 PF04053 Coatomer_WDAD: Coatom 98.3 0.00088 1.9E-08 59.6 22.9 142 84-253 33-174 (443)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0029 6.3E-08 58.1 26.4 148 9-156 121-334 (527)
354 COG3391 Uncharacterized conser 98.2 0.0033 7.2E-08 55.4 29.3 267 20-314 13-294 (381)
355 PF08596 Lgl_C: Lethal giant l 98.2 0.00028 6.1E-09 61.7 18.0 264 2-292 7-325 (395)
356 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0015 3.2E-08 58.0 22.7 197 106-327 62-270 (410)
357 PF08596 Lgl_C: Lethal giant l 98.2 0.004 8.7E-08 54.7 24.5 208 85-314 3-301 (395)
358 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.0011 2.3E-08 45.7 15.3 102 182-298 2-109 (111)
359 PF02897 Peptidase_S9_N: Proly 98.0 0.0086 1.9E-07 53.8 25.6 237 2-254 129-406 (414)
360 PF06977 SdiA-regulated: SdiA- 98.0 0.005 1.1E-07 50.1 22.1 200 84-300 22-247 (248)
361 PF08553 VID27: VID27 cytoplas 98.0 0.00046 1E-08 64.9 16.8 144 95-252 493-647 (794)
362 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00092 2E-08 46.0 14.0 100 128-247 2-109 (111)
363 COG0823 TolB Periplasmic compo 97.9 0.0018 4E-08 57.3 17.8 147 3-154 199-357 (425)
364 KOG3621 WD40 repeat-containing 97.9 0.00012 2.5E-09 65.8 10.1 109 193-304 45-155 (726)
365 COG3386 Gluconolactonase [Carb 97.9 0.012 2.6E-07 49.7 21.6 227 90-338 31-274 (307)
366 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.017 3.6E-07 50.6 25.2 254 63-328 22-339 (353)
367 smart00320 WD40 WD40 repeats. 97.8 6.2E-05 1.3E-09 41.2 5.3 38 116-153 3-40 (40)
368 TIGR03074 PQQ_membr_DH membran 97.8 0.032 6.8E-07 53.5 32.4 115 8-122 194-353 (764)
369 KOG4640 Anaphase-promoting com 97.8 0.00011 2.4E-09 65.1 8.9 95 178-283 19-115 (665)
370 KOG4640 Anaphase-promoting com 97.8 0.00019 4.1E-09 63.7 9.7 95 221-325 19-114 (665)
371 PF05096 Glu_cyclase_2: Glutam 97.7 0.016 3.6E-07 47.0 19.3 177 3-200 51-250 (264)
372 PF14583 Pectate_lyase22: Olig 97.7 0.025 5.4E-07 48.7 21.8 203 89-309 41-278 (386)
373 KOG2444 WD40 repeat protein [G 97.7 5.9E-05 1.3E-09 58.4 4.6 61 193-253 70-133 (238)
374 PF02897 Peptidase_S9_N: Proly 97.7 0.036 7.8E-07 49.8 24.8 213 86-320 126-374 (414)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.018 4E-07 50.5 20.2 92 2-93 7-118 (415)
376 PF14727 PHTB1_N: PTHB1 N-term 97.7 0.034 7.5E-07 49.0 27.4 236 7-251 36-317 (418)
377 smart00320 WD40 WD40 repeats. 97.7 0.00015 3.3E-09 39.6 5.0 32 270-301 9-40 (40)
378 KOG2395 Protein involved in va 97.6 0.0011 2.4E-08 57.9 11.8 142 10-154 348-499 (644)
379 COG3490 Uncharacterized protei 97.6 0.017 3.8E-07 46.8 16.8 226 72-312 56-319 (366)
380 KOG2079 Vacuolar assembly/sort 97.6 0.0035 7.5E-08 59.6 14.9 103 94-210 98-202 (1206)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.026 5.6E-07 49.7 18.6 42 6-48 77-118 (415)
382 TIGR03074 PQQ_membr_DH membran 97.5 0.084 1.8E-06 50.7 23.3 198 95-313 194-487 (764)
383 PRK13616 lipoprotein LpqB; Pro 97.5 0.04 8.6E-07 51.3 20.5 196 39-248 350-564 (591)
384 PRK13616 lipoprotein LpqB; Pro 97.4 0.0084 1.8E-07 55.7 15.8 155 126-302 350-524 (591)
385 PHA02713 hypothetical protein; 97.4 0.026 5.6E-07 52.5 18.0 224 65-314 273-544 (557)
386 COG3204 Uncharacterized protei 97.3 0.063 1.4E-06 44.0 17.4 177 35-219 82-270 (316)
387 PF10647 Gmad1: Lipoprotein Lp 97.3 0.081 1.7E-06 43.7 18.3 152 127-295 25-187 (253)
388 PF12894 Apc4_WD40: Anaphase-p 97.3 0.001 2.2E-08 38.2 4.9 36 272-308 10-45 (47)
389 PF05694 SBP56: 56kDa selenium 97.2 0.11 2.4E-06 45.3 18.9 195 94-305 86-344 (461)
390 KOG2079 Vacuolar assembly/sort 97.2 0.0012 2.5E-08 62.6 7.6 98 55-154 100-202 (1206)
391 PF08728 CRT10: CRT10; InterP 97.2 0.045 9.7E-07 51.1 17.5 159 137-303 49-246 (717)
392 KOG2395 Protein involved in va 97.2 0.0096 2.1E-07 52.4 12.2 143 94-252 344-500 (644)
393 KOG1897 Damage-specific DNA bi 97.2 0.25 5.3E-06 47.4 24.7 292 10-322 501-835 (1096)
394 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0022 4.7E-08 36.8 5.4 37 80-117 8-44 (47)
395 KOG3630 Nuclear pore complex, 97.0 0.016 3.4E-07 55.8 12.3 154 126-290 101-260 (1405)
396 KOG4441 Proteins containing BT 97.0 0.21 4.7E-06 46.6 19.6 218 64-308 301-551 (571)
397 KOG2444 WD40 repeat protein [G 96.9 0.0039 8.4E-08 48.7 6.4 102 56-157 72-179 (238)
398 PF05694 SBP56: 56kDa selenium 96.7 0.35 7.5E-06 42.4 20.7 184 59-254 93-344 (461)
399 KOG4441 Proteins containing BT 96.7 0.37 8E-06 45.1 19.4 225 7-253 284-547 (571)
400 KOG4499 Ca2+-binding protein R 96.7 0.2 4.4E-06 39.6 16.1 91 182-282 160-262 (310)
401 PHA02713 hypothetical protein; 96.7 0.13 2.9E-06 47.9 16.6 187 7-214 303-536 (557)
402 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.3 6.5E-06 40.5 22.7 214 85-316 24-292 (336)
403 PF12234 Rav1p_C: RAVE protein 96.5 0.16 3.4E-06 47.2 15.0 108 194-303 42-156 (631)
404 KOG2280 Vacuolar assembly/sort 96.4 0.64 1.4E-05 43.4 17.8 176 62-253 62-247 (829)
405 COG3204 Uncharacterized protei 96.4 0.44 9.6E-06 39.3 18.8 175 122-311 82-270 (316)
406 PHA03098 kelch-like protein; P 96.4 0.65 1.4E-05 43.4 18.7 141 7-155 294-464 (534)
407 PF02333 Phytase: Phytase; In 96.3 0.66 1.4E-05 40.4 21.4 204 93-313 66-301 (381)
408 PF05096 Glu_cyclase_2: Glutam 96.3 0.48 1E-05 38.8 20.6 164 127-312 46-212 (264)
409 PHA03098 kelch-like protein; P 96.1 0.55 1.2E-05 43.9 17.0 188 93-306 293-514 (534)
410 KOG4499 Ca2+-binding protein R 96.1 0.56 1.2E-05 37.3 19.1 107 224-331 159-268 (310)
411 PF15390 DUF4613: Domain of un 96.0 0.49 1.1E-05 42.9 14.9 152 84-251 20-185 (671)
412 PF15390 DUF4613: Domain of un 96.0 0.43 9.3E-06 43.3 14.5 119 177-303 54-186 (671)
413 KOG1916 Nuclear protein, conta 96.0 0.011 2.4E-07 55.3 5.0 170 34-216 128-328 (1283)
414 KOG3630 Nuclear pore complex, 96.0 0.087 1.9E-06 51.1 10.6 187 130-326 46-253 (1405)
415 PF12234 Rav1p_C: RAVE protein 96.0 0.43 9.4E-06 44.4 14.8 118 86-210 32-155 (631)
416 COG5167 VID27 Protein involved 95.9 0.37 8.1E-06 42.8 13.4 145 7-155 478-632 (776)
417 COG3490 Uncharacterized protei 95.9 0.79 1.7E-05 37.6 20.8 220 65-301 92-346 (366)
418 KOG2280 Vacuolar assembly/sort 95.9 1.6 3.4E-05 41.0 18.7 56 273-328 216-271 (829)
419 PHA02790 Kelch-like protein; P 95.6 1.7 3.7E-05 39.9 17.5 184 94-306 271-473 (480)
420 PF14870 PSII_BNR: Photosynthe 95.6 1.2 2.6E-05 37.7 17.0 153 84-249 145-301 (302)
421 KOG1916 Nuclear protein, conta 95.4 0.0063 1.4E-07 56.9 1.2 136 18-154 153-322 (1283)
422 PF14781 BBS2_N: Ciliary BBSom 95.3 0.52 1.1E-05 33.9 10.1 115 4-121 6-133 (136)
423 PF07995 GSDH: Glucose / Sorbo 95.3 1.7 3.8E-05 37.6 24.6 244 41-298 4-330 (331)
424 TIGR02604 Piru_Ver_Nterm putat 95.3 1.9 4.2E-05 38.0 16.3 150 84-242 14-203 (367)
425 COG3823 Glutamine cyclotransfe 95.2 0.8 1.7E-05 35.7 11.5 102 7-115 55-160 (262)
426 TIGR03118 PEPCTERM_chp_1 conse 95.2 1.6 3.4E-05 36.4 22.1 218 2-232 28-307 (336)
427 PF14870 PSII_BNR: Photosynthe 95.0 1.9 4.1E-05 36.6 28.1 227 41-300 64-301 (302)
428 PF08728 CRT10: CRT10; InterP 95.0 1.1 2.3E-05 42.4 14.1 156 95-252 49-246 (717)
429 PF07995 GSDH: Glucose / Sorbo 95.0 2.1 4.6E-05 37.1 22.9 241 2-247 7-330 (331)
430 PF10168 Nup88: Nuclear pore c 94.9 1.5 3.2E-05 42.2 15.1 28 180-210 85-112 (717)
431 PHA02790 Kelch-like protein; P 94.9 3.1 6.7E-05 38.3 18.0 137 7-154 271-422 (480)
432 TIGR02604 Piru_Ver_Nterm putat 94.8 1.3 2.9E-05 39.0 14.0 135 2-144 19-202 (367)
433 KOG2247 WD40 repeat-containing 94.6 0.0099 2.1E-07 51.8 0.1 139 3-148 41-181 (615)
434 PRK10115 protease 2; Provision 94.6 4.8 0.0001 38.9 28.4 68 85-154 128-206 (686)
435 PF10313 DUF2415: Uncharacteri 94.5 0.23 4.9E-06 27.7 5.3 32 274-305 1-35 (43)
436 KOG1897 Damage-specific DNA bi 94.5 5.2 0.00011 39.0 30.3 276 5-311 266-575 (1096)
437 COG4590 ABC-type uncharacteriz 94.4 0.59 1.3E-05 41.0 10.0 160 83-253 220-387 (733)
438 PF10313 DUF2415: Uncharacteri 94.4 0.26 5.6E-06 27.5 5.2 33 180-212 1-34 (43)
439 PF10647 Gmad1: Lipoprotein Lp 94.2 2.7 5.9E-05 34.8 21.7 155 40-202 25-186 (253)
440 PF14761 HPS3_N: Hermansky-Pud 94.2 2.1 4.6E-05 33.8 11.9 110 195-307 30-167 (215)
441 KOG1983 Tomosyn and related SN 94.1 2 4.2E-05 43.2 14.4 26 1-26 40-65 (993)
442 COG5167 VID27 Protein involved 94.1 1.7 3.6E-05 38.9 12.3 137 142-303 485-632 (776)
443 PF14761 HPS3_N: Hermansky-Pud 93.8 2.7 5.8E-05 33.3 17.8 175 96-303 29-214 (215)
444 KOG4460 Nuclear pore complex, 93.8 4.5 9.7E-05 36.5 14.2 48 275-322 167-217 (741)
445 PF10395 Utp8: Utp8 family; I 93.8 6.2 0.00013 37.2 19.6 161 81-257 127-310 (670)
446 PRK13684 Ycf48-like protein; P 93.7 4.3 9.3E-05 35.3 14.7 141 3-153 179-329 (334)
447 PF07569 Hira: TUP1-like enhan 93.5 0.74 1.6E-05 37.1 8.7 86 221-311 11-103 (219)
448 PF07569 Hira: TUP1-like enhan 93.4 0.51 1.1E-05 37.9 7.8 61 193-254 22-97 (219)
449 PF11715 Nup160: Nucleoporin N 93.4 0.7 1.5E-05 43.3 9.7 80 232-311 156-256 (547)
450 KOG1983 Tomosyn and related SN 93.2 3.8 8.3E-05 41.2 14.6 33 82-114 34-66 (993)
451 KOG1900 Nuclear pore complex, 93.1 1.8 3.9E-05 43.4 11.9 139 15-156 96-273 (1311)
452 COG1520 FOG: WD40-like repeat 92.8 6.5 0.00014 34.8 19.6 202 95-312 68-277 (370)
453 PF03022 MRJP: Major royal jel 92.7 5.5 0.00012 33.7 17.2 174 64-240 34-253 (287)
454 TIGR02276 beta_rpt_yvtn 40-res 92.7 0.59 1.3E-05 25.8 5.3 40 6-46 1-41 (42)
455 PF02333 Phytase: Phytase; In 92.7 6.6 0.00014 34.5 19.5 204 6-220 66-300 (381)
456 PRK13684 Ycf48-like protein; P 92.5 6.8 0.00015 34.1 26.4 151 125-301 172-329 (334)
457 PF12768 Rax2: Cortical protei 92.4 4.2 9.2E-05 34.1 11.9 99 105-216 16-128 (281)
458 PF11635 Med16: Mediator compl 92.0 13 0.00029 36.4 19.7 201 98-298 65-345 (753)
459 TIGR03606 non_repeat_PQQ dehyd 91.9 9.4 0.0002 34.6 15.4 115 175-294 25-166 (454)
460 PRK05560 DNA gyrase subunit A; 91.8 14 0.00031 36.4 19.9 206 92-303 495-721 (805)
461 TIGR02276 beta_rpt_yvtn 40-res 91.7 1.2 2.6E-05 24.5 5.8 37 194-230 5-41 (42)
462 COG4257 Vgb Streptogramin lyas 91.5 7.1 0.00015 32.2 16.2 198 84-306 62-265 (353)
463 KOG2377 Uncharacterized conser 91.4 6.5 0.00014 34.9 12.0 108 123-242 64-173 (657)
464 KOG1896 mRNA cleavage and poly 91.3 18 0.00039 36.5 28.9 175 138-326 1047-1244(1366)
465 PF08801 Nucleoporin_N: Nup133 91.1 11 0.00025 34.0 14.9 32 273-304 189-220 (422)
466 KOG4460 Nuclear pore complex, 91.0 7.4 0.00016 35.2 12.1 26 85-110 105-130 (741)
467 TIGR01063 gyrA DNA gyrase, A s 90.8 18 0.00039 35.8 24.2 235 60-303 502-769 (800)
468 TIGR01063 gyrA DNA gyrase, A s 90.3 20 0.00043 35.4 20.8 207 91-303 492-718 (800)
469 COG5276 Uncharacterized conser 90.3 9.7 0.00021 31.8 25.1 156 79-253 82-242 (370)
470 PF14781 BBS2_N: Ciliary BBSom 90.3 5.4 0.00012 28.9 13.1 107 194-312 11-134 (136)
471 KOG1900 Nuclear pore complex, 90.1 11 0.00024 38.2 13.7 82 222-304 178-273 (1311)
472 KOG2247 WD40 repeat-containing 90.1 0.042 9E-07 48.1 -1.9 137 86-238 37-175 (615)
473 PF08801 Nucleoporin_N: Nup133 89.5 6.7 0.00014 35.4 11.5 32 180-213 190-221 (422)
474 PF11715 Nup160: Nucleoporin N 89.3 1 2.2E-05 42.3 6.3 86 135-220 156-257 (547)
475 PF10168 Nup88: Nuclear pore c 89.3 22 0.00048 34.5 25.0 89 125-214 84-182 (717)
476 COG5276 Uncharacterized conser 88.8 13 0.00028 31.1 26.4 189 41-253 89-286 (370)
477 smart00564 PQQ beta-propeller 88.5 1.3 2.9E-05 22.8 3.9 25 287-311 8-32 (33)
478 KOG3522 Predicted guanine nucl 88.3 13 0.00029 35.7 12.3 245 35-297 451-742 (925)
479 KOG2377 Uncharacterized conser 88.0 19 0.00042 32.1 15.9 119 82-213 65-187 (657)
480 PF12657 TFIIIC_delta: Transcr 87.8 8.4 0.00018 29.7 9.5 102 2-110 10-118 (173)
481 PF05935 Arylsulfotrans: Aryls 87.7 23 0.00049 32.7 15.0 161 135-314 113-312 (477)
482 COG4590 ABC-type uncharacteriz 87.7 3.8 8.2E-05 36.2 8.0 174 118-312 213-395 (733)
483 PRK05560 DNA gyrase subunit A; 87.1 34 0.00073 34.0 23.5 235 60-303 504-772 (805)
484 KOG3616 Selective LIM binding 87.1 12 0.00026 35.6 11.1 91 208-312 323-414 (1636)
485 PF14727 PHTB1_N: PTHB1 N-term 86.9 23 0.00049 31.8 28.8 140 55-210 38-203 (418)
486 PF12768 Rax2: Cortical protei 86.8 14 0.0003 31.1 10.7 96 17-112 15-122 (281)
487 PF07250 Glyoxal_oxid_N: Glyox 86.7 16 0.00035 29.9 13.5 85 222-313 117-207 (243)
488 smart00564 PQQ beta-propeller 86.5 1.7 3.8E-05 22.3 3.6 25 10-34 8-32 (33)
489 TIGR03032 conserved hypothetic 86.4 18 0.00039 30.7 10.9 106 21-136 188-315 (335)
490 TIGR03606 non_repeat_PQQ dehyd 85.9 27 0.00059 31.8 14.2 115 124-243 28-166 (454)
491 PF10433 MMS1_N: Mono-function 85.7 30 0.00066 32.2 21.5 237 60-325 228-502 (504)
492 KOG3616 Selective LIM binding 85.5 35 0.00077 32.7 14.4 74 78-154 9-82 (1636)
493 COG3823 Glutamine cyclotransfe 85.5 16 0.00036 28.8 13.0 109 197-312 105-213 (262)
494 PF01011 PQQ: PQQ enzyme repea 84.9 3.3 7.1E-05 22.4 4.3 28 287-314 2-29 (38)
495 COG3292 Predicted periplasmic 84.2 35 0.00076 31.6 17.1 270 10-312 177-455 (671)
496 PF10433 MMS1_N: Mono-function 84.1 36 0.00078 31.7 24.9 237 2-251 49-341 (504)
497 PLN00033 photosystem II stabil 83.9 32 0.00068 30.8 17.7 149 84-249 239-396 (398)
498 PF01011 PQQ: PQQ enzyme repea 83.0 5.3 0.00012 21.5 4.6 29 195-223 2-30 (38)
499 COG4257 Vgb Streptogramin lyas 83.0 26 0.00056 29.1 21.8 231 2-253 67-306 (353)
500 PF03088 Str_synth: Strictosid 82.9 6.2 0.00014 26.4 5.7 44 198-241 32-75 (89)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-51 Score=327.74 Aligned_cols=300 Identities=16% Similarity=0.238 Sum_probs=263.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~ 80 (387)
++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|+ +..+++|+.||+|++||..+++++. .+
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD----gk~iASG~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD----GKKIASGSKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC----cchhhccccCCeEEEecCCCCCcccccc
Confidence 579999999999999999999999999999999999999999999995 5566679999999999999987764 33
Q ss_pred C-CCCCeeeEEecc-----CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 81 P-VPEPVAPLATTA-----DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 81 ~-~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
. |...|++++|.| ..++|++++.||.++|||+..+.++..+.+|+.+|+|+.|-.+| ++++|+.|++|++|+.
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA 275 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc
Confidence 3 778999999976 56799999999999999999999999999999999999997654 8999999999999998
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC-----------C-----------------------CCceEEEEe
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG-----------S-----------------------FNSIIISCS 200 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~-----------------------~~~~l~s~~ 200 (387)
..+.....+.+|...|+.++++.+ + .+..|++|+
T Consensus 276 ------------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 276 ------------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred ------------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 677888999999999999988611 1 123699999
Q ss_pred CCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621 201 MDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 201 ~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (387)
.|.++.+|+....+ ++.... |..-|+.+.|+||++++++++.|..|++|+.+++ +....+.+|-+.|..
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQ 414 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEE
Confidence 99999999976543 555554 7889999999999999999999999999999984 333445689999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 279 VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 279 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
++|+.|.++|++|+.|.++++|++++.++...+.+|.+ +|.++.+++..
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D-EVf~vDwspDG 463 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD-EVFAVDWSPDG 463 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc-eEEEEEecCCC
Confidence 99999999999999999999999999999999998855 88888776643
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-50 Score=325.27 Aligned_cols=275 Identities=18% Similarity=0.257 Sum_probs=255.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
..||+|++.||||+.+|.++||+..+...+++|.+|...|.++.|+|.. ....+++++.||++++|++.+..++..+.
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~ 258 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLE 258 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhh
Confidence 4699999999999999999999999999999999999999999999942 13467789999999999999988888887
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|...|..++|+|+|++|++++.|.+-++||+++++.+...++|...|.+++|+|||.++++|+.|..-+|||+
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl------ 332 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL------ 332 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec------
Confidence 6678999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC-CCCeEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP-TETDFF 238 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~ 238 (387)
.++.++..+.+|..+|.+++|+|++ ..|+||+.|++++|||++..+++..+. |.+-|+.+.|+| .|.+|+
T Consensus 333 ------Rtgr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 333 ------RTGRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred ------ccCcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence 6888999999999999999999985 999999999999999999999998888 778899999999 678999
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+++.|+++++|...+ ..+...+.+|.+.|.++..++++.+++|++.|.++++|.
T Consensus 405 TasyD~t~kiWs~~~---------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRT---------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EcccCcceeeecCCC---------cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999887 344445569999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-49 Score=311.78 Aligned_cols=277 Identities=18% Similarity=0.295 Sum_probs=248.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCce-eEeccCCCCCceeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
++|||||+.||+|+.||+|++||.++|+. ...+.+|...|++++|.|-... ...++++++.||.++|||+..+.++..
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 68999999999999999999999999876 4678999999999999984332 234688899999999999999988887
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-----------CCC----------
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-----------PDG---------- 137 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~---------- 137 (387)
+. |..+|+|+.|--+| +|++|+.|++|++|+...|.+.+.+++|...|+.++.+ |.+
T Consensus 243 lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred eccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 76 77899999998765 89999999999999999999999999999999999887 222
Q ss_pred ---------------CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621 138 ---------------SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 138 ---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
..|++|+.|.++.+|+-. ...+++..+.+|+.-|+.+.|+|++ +++++++.|
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----------~~kkpi~rmtgHq~lVn~V~fSPd~--r~IASaSFD 388 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----------KSKKPITRMTGHQALVNHVSFSPDG--RYIASASFD 388 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEeccc-----------ccccchhhhhchhhheeeEEECCCc--cEEEEeecc
Confidence 359999999999999873 3556788899999999999999996 999999999
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 203 CTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
..|++||.++|+.+.+|. |-..|..++|+.|.++|++|+.|.++++|++++ +.+..-+.+|...|.++.|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---------kKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---------KKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---------eeecccCCCCCceEEEEEe
Confidence 999999999999999999 789999999999999999999999999999997 4445556689999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEE
Q 035621 282 MNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 282 s~~~~~l~s~~~dg~i~iwd 301 (387)
+|||..+++|+.|..+++|.
T Consensus 460 spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceeecCCCceEEEeec
Confidence 99999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.3e-45 Score=279.30 Aligned_cols=272 Identities=17% Similarity=0.218 Sum_probs=244.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--C----
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--T---- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~---- 75 (387)
+.|++|.++|++++.||.+.|||.-|...+..++-....|..++|+|.+.+. +.|+-|+...||++.+. +
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V----AcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV----ACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE----EecCcCceeEEEecccccccccce
Confidence 5799999999999999999999999998888888888899999999955544 45999999999999754 2
Q ss_pred cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 035621 76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVP 153 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 153 (387)
..+.+. |.+-+.|+.|.+| ..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||
T Consensus 137 v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence 222233 6788999999986 4688999999999999999999999999999999999999 999999999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEe
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLAL 230 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~ 230 (387)
+ +...+.+.|.+|...|+++.|.|++ .-|++|+.|++.++||++..+.+..+.++ .+|++++|
T Consensus 216 ~------------R~~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 216 V------------RSGQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred c------------cCcceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 9 5778999999999999999999996 89999999999999999999999998854 58999999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+..|++|++|..|..+.+||.-.+ +....+.+|.+.|+++..+|||..++||+.|.+++||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999998763 33344569999999999999999999999999999994
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.2e-44 Score=267.82 Aligned_cols=282 Identities=19% Similarity=0.302 Sum_probs=241.7
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC-CCCC
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP-VPEP 85 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~-~~~~ 85 (387)
-+|++++.|-+|++|...+|.+.++++...+.|+.+...|++..++ +.....|++||++++++ +..+. |...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LA-----aa~~qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLA-----AAGNQHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhh-----hccCCeeEEEEccCCCCCceeEEeccCCc
Confidence 5899999999999999999999999997788899999999766554 45678899999988754 66666 5588
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
|..+.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+..
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~--------- 155 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE--------- 155 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC---------
Confidence 9999999999999999999999999999977766665 779999999999999999999999999999943
Q ss_pred CCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------EEEEEe-cCCceeEEEeCCCCCeE
Q 035621 166 NPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------HLSTVT-FPCAIMGLALDPTETDF 237 (387)
Q Consensus 166 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l 237 (387)
..+...+ +....+|.++.+.|++ .+++.+...|..++|++-+.+ ++..++ |...+..+.+|||+++|
T Consensus 156 ---~~c~~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 156 ---NSCTHELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred ---CccccccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 2222222 2334688999999885 999999999999999997654 344454 67889999999999999
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG 317 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (387)
++++.|..++||+.... ......+.+|...++.++||.||+||+||+.|+.+++|++..++.++...+|+..
T Consensus 231 at~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred EeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999999999872 2333445689999999999999999999999999999999999999999999874
Q ss_pred C
Q 035621 318 S 318 (387)
Q Consensus 318 ~ 318 (387)
.
T Consensus 303 ~ 303 (311)
T KOG0315|consen 303 A 303 (311)
T ss_pred c
Confidence 3
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-42 Score=265.68 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=235.1
Q ss_pred CcEEEeeCCCCcEEEEeCC-----CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 8 NEVILTSSPEGPITAYNPS-----SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
.+.+++++.|.++.+|++. .|..++.+.+|...|..++.++++.+..+ ++.|+++++||+.+++..+.+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS----~swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS----ASWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe----ccccceEEEEEecCCcEEEEEEe
Confidence 5689999999999999875 46778999999999999999997665554 9999999999999998877776
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--CCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--DKPVSCLKISPD--GSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 157 (387)
|...|.+++|++|.+.+++|+.|.+|.+||... .+..++..+ .+.|+|+.|+|+ ..++++++.|+++++||+
T Consensus 104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl--- 179 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL--- 179 (315)
T ss_pred cCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc---
Confidence 778899999999999999999999999999854 444455433 789999999997 679999999999999999
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeE
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDF 237 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 237 (387)
...+....+.+|++.++.++++|++ .+.++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|
T Consensus 180 ---------~~~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 180 ---------RNCQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred ---------CCcchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeE
Confidence 5667778899999999999999995 99999999999999999999999999999999999999997666
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.+.. ..|+|||+.+.......+................+++|++||..|++|..|+.|++|.+.
T Consensus 249 ~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 66654 459999999876554443332222222334456788999999999999999999999875
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=290.65 Aligned_cols=266 Identities=19% Similarity=0.233 Sum_probs=240.4
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEe
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAIS 111 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d 111 (387)
.+...||..+.|+.+. ..++||+-+|.+++|+..+...+..+. |...+.++.|+|. +..+++++.||++++|+
T Consensus 172 ~gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred ccCCCcceeeEeecCC----CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3567789999999954 455569999999999999998888777 7789999999996 66899999999999999
Q ss_pred CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621 112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
+.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+ .+...+....+|..+|.+++|.+++
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~------------~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL------------ETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc------------ccchhhHhhcccccccceeEecCCC
Confidence 9999999999999999999999999999999999999999999 6677777889999999999999985
Q ss_pred CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc
Q 035621 192 FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN 270 (387)
Q Consensus 192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 270 (387)
.+++||+.|..-+|||++++.++..+. |-.+|.+++|+|+|..|++|+.|++++|||++.- .......
T Consensus 316 --SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ip 384 (459)
T KOG0272|consen 316 --SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIP 384 (459)
T ss_pred --ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceecc
Confidence 999999999999999999999999888 7789999999999999999999999999999972 2244556
Q ss_pred cccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 271 RHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 271 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
+|.+-|+.++|+| .|.+|+|++.|++++||...++.+++.+.+|.. .|-++.+++.+
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~ 442 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDS 442 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCC
Confidence 8999999999998 788999999999999999999999999999854 88777776544
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-44 Score=287.03 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=246.4
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++.|.|+|+.|++|+..|.+.+|+..+......++.|..+|+++.|++++. ++++|+.+|.|++|+..-.......
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEecccchhhhHHhh
Confidence 478999999999999999999999866665566789999999999999554 4555999999999998655544444
Q ss_pred CCC-CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 81 PVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 81 ~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
.+. +.|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp----- 251 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP----- 251 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC-----
Confidence 454 89999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC-CeE
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE-TDF 237 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l 237 (387)
.++.++.++..|...|..+.|.+++ ++|+++|.|..++++|+++.+.+..++ |...++++.|+|-. .++
T Consensus 252 -------rSg~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 252 -------RSGSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred -------CCcchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 6888999999999999999999986 999999999999999999988888888 88999999999965 567
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.+|+.||.|..|.+.. ..++.....+|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus 323 tsgg~Dgsvvh~~v~~--------~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGL--------EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccc--------cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 7788999999999884 234444556899999999999999999999999999999743
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=260.66 Aligned_cols=263 Identities=21% Similarity=0.281 Sum_probs=224.9
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-----CCcccccC-CCCCeeeEEeccCCCEEEEec
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-----STPLHNIP-VPEPVAPLATTADGSYLFTGG 102 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 102 (387)
....++++|++.|+.++..+. ....+.+++.|..+.+|++.. |.+++.+. |...|..+..++||++.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 456678999999999999874 233455689999999999854 44555555 677899999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--CC
Q 035621 103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--ND 180 (387)
Q Consensus 103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 180 (387)
.|+.+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|++ .+.+..+...+ .+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-------------~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-------------LGVCKYTIHEDSHRE 149 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee-------------cccEEEEEecCCCcC
Confidence 9999999999999999999999999999999999999999999999999998 33444444443 78
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
.|.++.|+|+....+|++++.|+++++||+++.+....+. |...++.++++|||..+++|+.||.+.+||++..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----- 224 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----- 224 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-----
Confidence 8999999999777999999999999999999999888876 7789999999999999999999999999999973
Q ss_pred cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
..+..+ .|...|.+++|+|+.-.|+.+ .+..|+|||+++++++..++....++
T Consensus 225 ---k~lysl--~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 225 ---KNLYSL--EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred ---ceeEec--cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc
Confidence 333333 688999999999986666555 55569999999999999888665544
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.4e-41 Score=257.27 Aligned_cols=271 Identities=18% Similarity=0.281 Sum_probs=239.1
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecCCCcEEE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYA 109 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i 109 (387)
.+++++|...|.++.|+++.. ++++++.||.+.|||.-+....+.++.+ ..|..++|+|.|+++|+|+.|+...|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 478999999999999999544 4555999999999999999888888866 57999999999999999999999999
Q ss_pred EeCCCC------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 110 ISVPKG------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 110 ~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
|++.+. +..+.+.+|.+.+.|+.|-+| ..|++++.|.+..+||+ +++..+..+.+|.+.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDi------------e~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDI------------ETGQQTQVFHGHTGDVM 190 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEc------------ccceEEEEecCCcccEE
Confidence 999755 345678899999999999975 57999999999999999 78889999999999999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 262 (387)
++.++|. +++.+++|+-|++.++||++.+.+.++|. |...|+++.|.|+|.-+++|+.|+..++||++.......+.
T Consensus 191 slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys- 268 (343)
T KOG0286|consen 191 SLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS- 268 (343)
T ss_pred EEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence 9999995 36999999999999999999999999998 78999999999999999999999999999999843222111
Q ss_pred ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
...-..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+ .|+++.+++.
T Consensus 269 ------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-RvScl~~s~D 326 (343)
T KOG0286|consen 269 ------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-RVSCLGVSPD 326 (343)
T ss_pred ------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC-eeEEEEECCC
Confidence 112345799999999999999999999999999999999999999855 9998877653
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-41 Score=274.91 Aligned_cols=274 Identities=20% Similarity=0.293 Sum_probs=245.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
|+|+.+|.+||+|+.||.++||+. +|.++.+|..|.+||.++.|+.++ .++++++.|+++.+||..++...+.+.
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G----~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG----TYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC----CEEEeccCCccEEEEeccCceEEEeee
Confidence 689999999999999999999995 799999999999999999999954 455569999999999999999999888
Q ss_pred CCCCe-eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 VPEPV-APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 ~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
..+.. ..+.|-.+ ..+++.+.|+.|+++.+....++.++.+|.++|.++.|+|.+.+|++++.|++++||..
T Consensus 316 ~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~------ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM------ 388 (524)
T ss_pred eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec------
Confidence 66544 77888765 46888899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCC-------CceEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceeEEEeCC
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-------NSIIISCSMDCTCKFWRLLNGTHLSTV-TFPCAIMGLALDP 232 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~ 232 (387)
........+.+|...|..+.|+|.+. +..+++++.|++|++||+..+.++..| .|..+|.+++|+|
T Consensus 389 ------~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 389 ------GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred ------CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 56778888999999999999998753 458999999999999999999999999 5899999999999
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+|+++++|+.||.|.+|+.+++... .. . ...+.|..++|+.+|..|..+-.|+.+++-|++
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~--------~s-~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLV--------KS-Y-QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCeeEeccccchhee--------Ee-e-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999984322 22 2 346679999999999999999999999999875
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-41 Score=289.24 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=272.7
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-ccc
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHN 79 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~ 79 (387)
+++|+|.+.+|++|+.||.++|||+..+.+...|++|.+.|.++.|+|.... ..+++|..|+++++||+++... +..
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~~~tcl~~ 187 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLNDKRTCLHT 187 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEcccCchHHHH
Confidence 3689999999999999999999999999999999999999999999996543 4567799999999999986654 444
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc------------------------------------------
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD------------------------------------------ 116 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------ 116 (387)
.. |.+.|++++|++|+..+++++.|..+.+||+.+.+
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 44 77889999998888888888888888888862211
Q ss_pred --------------------------------------------------------------------------------
Q 035621 117 -------------------------------------------------------------------------------- 116 (387)
Q Consensus 117 -------------------------------------------------------------------------------- 116 (387)
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence
Q ss_pred ---------eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 117 ---------ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 117 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
....+.+|...|.++....+|.+|++|+.|.++++|.+.+. .....++....+|...|.++++
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~--------~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN--------CSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC--------cchhhhhhhhcccccccceeee
Confidence 01123467777888875557789999999999999987221 1344566777899999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEE-------ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTV-------TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
+..+ ..+|+++|.|+++++|++...+. ...+ .|...|++++++|+.+.+++|+.|.+.++|++..
T Consensus 420 ~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---- 494 (775)
T KOG0319|consen 420 SKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---- 494 (775)
T ss_pred cccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----
Confidence 7665 58999999999999999986221 1112 2778999999999999999999999999999985
Q ss_pred cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE--------EEEecCC
Q 035621 258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM--------VIATGIG 329 (387)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~ 329 (387)
..+...+.+|...|+++.|+|..+.++|++.|++|+||.+++..++++|.+|.. .|... .++.+.+
T Consensus 495 -----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 495 -----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred -----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCC
Confidence 355566779999999999999999999999999999999999999999999966 55444 5677888
Q ss_pred CceeeEEEecCCCCCCCCCcceeeecc
Q 035621 330 GSRGCGVVKTGKAGNDSGGGVFEMYGE 356 (387)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (387)
+..++|.++++.+....+.+.-+++.-
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEE
Confidence 888999999998877666665554443
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-40 Score=271.16 Aligned_cols=308 Identities=16% Similarity=0.227 Sum_probs=247.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc---CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS---GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+.|||||+++|+++.||+|.+||-.+|+.+..+. +|.+.|.++.|+| ...++++++.|.++++||+.+.++++
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP----Ds~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP----DSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC----CCceEEEecCCceEEEEEeeccceEE
Confidence 5799999999999999999999999999999997 8999999999999 45666779999999999999999998
Q ss_pred ccCCCCCe----eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 79 NIPVPEPV----APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 79 ~~~~~~~v----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
++.....+ ..+-|. +..|++.+.+|.|.+++......+..+.+|...|+++..+|++++|++|+.||.|.-|+.
T Consensus 272 t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 88865443 334444 668999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccccCCCCCC-----------------------------------------------------CC-ccc-------eE
Q 035621 155 FQLVDEHTDDKN-----------------------------------------------------PD-DLM-------LQ 173 (387)
Q Consensus 155 ~~~~~~~~~~~~-----------------------------------------------------~~-~~~-------~~ 173 (387)
............ .. ... +.
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 543222110000 00 000 00
Q ss_pred eeecc--------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEecCCceeEEEeCCCCCeEEEEcc
Q 035621 174 KFVAH--------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVTFPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 174 ~~~~~--------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
.++.+ .-...+++++|++ +.++.|+.|+.|++|.+..... .....|..++++++|+||+.+|+++..
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence 01111 1124567778775 8999999999999999987553 344568999999999999999999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 322 (387)
.+.+.+||..+... ......-|...|.+++|+|+..++|||+.|-.|.||+++.....-.+++.+.+.|+.+
T Consensus 508 ~rkvv~yd~~s~~~--------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 508 SRKVVLYDVASREV--------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred CCcEEEEEcccCce--------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence 99999999987432 1111224999999999999999999999999999999998766666776666679998
Q ss_pred EEE
Q 035621 323 VIA 325 (387)
Q Consensus 323 ~~~ 325 (387)
.|.
T Consensus 580 ~wl 582 (603)
T KOG0318|consen 580 AWL 582 (603)
T ss_pred EEe
Confidence 664
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-41 Score=266.88 Aligned_cols=275 Identities=17% Similarity=0.267 Sum_probs=246.4
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Ccccc-c
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHN-I 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~-~ 80 (387)
-|+|+-.++++++.|++|++||..+++....+++|...+..+.|+..+. .+++++.|-.+++||.++. ++++. +
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~ 190 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLI 190 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999554 4555999999999999763 44443 3
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.++++|-+
T Consensus 191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~------ 264 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV------ 264 (406)
T ss_pred CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe------
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCC-------------CceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-------------NSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM 226 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~ 226 (387)
....+...+..|..+|.+++|.|... ++++.+++.|++|++||+.++.++.++. |...|.
T Consensus 265 ------~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 265 ------ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ------ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 56667788889999999999976521 3599999999999999999999999987 788999
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
.++|+|.|+||+++..|+++++||++.. .... ....|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk-~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMK-TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccc--------eeee-ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999982 2333 33489999999999999999999999999999974
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=263.10 Aligned_cols=281 Identities=17% Similarity=0.256 Sum_probs=245.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+++.|.+..|++|+.|++|+|||+.+|++..++.+|...|..+++++.. .++++++.|+.|+.||++.++.++.+.
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH----pYlFs~gedk~VKCwDLe~nkvIR~Yh 232 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH----PYLFSAGEDKQVKCWDLEYNKVIRHYH 232 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC----ceEEEecCCCeeEEEechhhhhHHHhc
Confidence 5788999999999999999999999999999999999999999999944 444559999999999999999988776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||+
T Consensus 233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl------ 306 (460)
T KOG0285|consen 233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL------ 306 (460)
T ss_pred cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee------
Confidence 6689999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 239 (387)
..++....+..|...+.+++.+|.. ..+++++.| .|+-|++..+..+..+. +..-+++++.+.|+ ++++
T Consensus 307 ------~agkt~~tlt~hkksvral~lhP~e--~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 307 ------RAGKTMITLTHHKKSVRALCLHPKE--NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ------ccCceeEeeecccceeeEEecCCch--hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 6777888899999999999999985 788888876 49999999999888876 66778889888775 8889
Q ss_pred EccCCcEEEEeccccccccccccc-eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQ-ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
|+.+|.+.+||.+++...+..... .+..+ ..+..|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl--~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSL--ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCcc--ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999999999987654432111 11111 2356799999999999999999999999997543
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-39 Score=268.11 Aligned_cols=360 Identities=17% Similarity=0.195 Sum_probs=261.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC----------------------------------------------CceeEecc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS----------------------------------------------GAILAHFS 35 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~----------------------------------------------~~~~~~~~ 35 (387)
..|||.|.++|+|...|+|+|||... |..+.++.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT 144 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence 46899999999999999999999743 11222344
Q ss_pred CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621 36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK 114 (387)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 114 (387)
+|...|+++.|-|.+.+ ++++++.|++|.+|.-.-.+....+. |..-|.|+.|+|||.++++.+.||++.+||-.+
T Consensus 145 GhSr~ins~~~KpsRPf---Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPF---RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred ccceeEeeeeccCCCce---EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 55555666666553222 46779999999999765445444454 667899999999999999999999999999999
Q ss_pred CceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC---------------------------
Q 035621 115 GDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD--------------------------- 164 (387)
Q Consensus 115 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------- 164 (387)
++.+..+. +|++.|.+++|+||++.+++++.|.+++|||+..........
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 99999998 899999999999999999999999999999985421100000
Q ss_pred ----CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-------------------------
Q 035621 165 ----KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------------------------- 215 (387)
Q Consensus 165 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------- 215 (387)
.......++.+.+|...|+++..++++ .+|++|+.||.|.-||..++..
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 002233667788999999999999986 9999999999999999865431
Q ss_pred ------EEEE---------------------------------------------------ecCCceeEEEeCCCCCeEE
Q 035621 216 ------LSTV---------------------------------------------------TFPCAIMGLALDPTETDFF 238 (387)
Q Consensus 216 ------~~~~---------------------------------------------------~~~~~v~~~~~~~~~~~l~ 238 (387)
++.+ ...-...+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 0000 0111356789999999999
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
+|+.|+.+++|.+........ .....|.++|+++++|||+.|||+|...+.+.+||+.+++.....-.-+...
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee-------~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak 532 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEE-------AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK 532 (603)
T ss_pred EecccceEEEEEecCCcccce-------eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence 999999999999987443211 1123799999999999999999999999999999999998854433434568
Q ss_pred ceeEEEEecC--------CCceeeEEEecCCC------CCCCCCccee-eeccceeccccccchhhhcee
Q 035621 319 ISEMVIATGI--------GGSRGCGVVKTGKA------GNDSGGGVFE-MYGEKLLDLSIKNTIELENVM 373 (387)
Q Consensus 319 v~~~~~~~~~--------~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 373 (387)
|.+|++++.. +.++.+|-++.... .+..+..... +-....++..+|-.++.|++.
T Consensus 533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 8888776533 33345555443221 1111111111 122234445577788888753
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=244.50 Aligned_cols=280 Identities=19% Similarity=0.229 Sum_probs=229.9
Q ss_pred ccccCC-CcEEEeeCCCCcEEEEeCCC---CceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--
Q 035621 2 LHHLPC-NEVILTSSPEGPITAYNPSS---GAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-- 74 (387)
Q Consensus 2 l~~s~~-~~~l~~~~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-- 74 (387)
++|+|- |..||+++.|+.|+||+... ..+...+ .+|...|++++|+|.+.++ ++++.|.++.||.-..+
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~L----a~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYL----ASASFDATVVIWKKEDGEF 95 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEE----EEeeccceEEEeecCCCce
Confidence 689998 89999999999999999874 3344444 4799999999999965544 45999999999987654
Q ss_pred CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621 75 TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA 150 (387)
Q Consensus 75 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 150 (387)
+++..++ |...|.|++|+++|++||+++.|..|.||.+..+ ++...++.|...|..+.|+|...+|++++.|.+|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 4556665 6789999999999999999999999999998744 56778899999999999999999999999999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 230 (387)
+|+-.. .....++.++.+|...|.+++|.+.+ ..|++++.|++++||...+. ....+...+..+.|
T Consensus 176 ~~~~~~---------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 176 VYRDED---------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPW 241 (312)
T ss_pred EEeecC---------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeee
Confidence 998731 14567899999999999999999885 89999999999999986522 11235678889999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeCCCcEEEEECC
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 303 (387)
. ...|++++.|+.|++|.......... -..+......|...|++++|.|. .++|++|+.||.|++|.+.
T Consensus 242 ~--~~~IaS~ggD~~i~lf~~s~~~d~p~--~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D--NGVIASGGGDDAIRLFKESDSPDEPS--WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c--ccceEeccCCCEEEEEEecCCCCCch--HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8 56899999999999997764221111 12222234579999999999995 6799999999999999875
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-39 Score=241.98 Aligned_cols=252 Identities=18% Similarity=0.257 Sum_probs=214.0
Q ss_pred eccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEE
Q 035621 55 SHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCL 131 (387)
Q Consensus 55 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~ 131 (387)
..|++++.|.+|++|...+|.+..+++|+ ..|+.+...|+++.||+++. -.|++||+++++ ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 34566999999999999999999999987 57999999999999999875 459999998775 588999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 132 KISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 132 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
.|..+|+++++|++||+++|||++. . .......|..+|+++..+|+. ..|++|..+|.|++||+.
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~------------~-~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRS------------L-SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccC------------c-ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence 9999999999999999999999953 2 233444577999999999885 789999999999999999
Q ss_pred CCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 212 NGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 212 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
+..+...+. ....+.++...|||.+++++...|+.++|++....... ...+...++.|.+.+..+.+|||+++||
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s---~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS---ELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc---cceEhhheecccceEEEEEECCCCcEEE
Confidence 887776664 34689999999999999999999999999998733222 2334444678999999999999999999
Q ss_pred EEeCCCcEEEEECCCc-cEEEEeecccCCCceeEEEEe
Q 035621 290 SAAEDGSVYIWEIEKR-QVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 290 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~ 326 (387)
+++.|.+++||+.++. +....+++|. +-+.+-+|+.
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~-rWvWdc~FS~ 268 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQ-RWVWDCAFSA 268 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCC-ceEEeeeecc
Confidence 9999999999999998 6667777764 4666666654
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-39 Score=262.62 Aligned_cols=296 Identities=20% Similarity=0.325 Sum_probs=251.3
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCC----ceeEecc------C----CCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSG----AILAHFS------G----SRSPRRGLTFAGKPFIAASHISPTTGSGSV 66 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~----~~~~~~~------~----~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v 66 (387)
.+|+|-.. ++++|+.|-..++|++... .....|+ + ....|++++|+.++ +.|++|+.||.+
T Consensus 184 ~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G----~~LatG~~~G~~ 259 (524)
T KOG0273|consen 184 CAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG----TLLATGSEDGEA 259 (524)
T ss_pred EecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC----CeEEEeecCcEE
Confidence 46899766 9999999999999998641 1111111 1 23459999999954 455569999999
Q ss_pred EEEEccCCCccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 67 HLYNLWSSTPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 67 ~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
++|+.. |.++..+ .|.++|.++.|+..|.||++++.|+++.+||..+++....+.-|..+-..+.|-.+ ..+++++.
T Consensus 260 riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~t 337 (524)
T KOG0273|consen 260 RIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSST 337 (524)
T ss_pred EEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCC
Confidence 999974 5555555 48899999999999999999999999999999999999999988888778888754 46999999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA 224 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 224 (387)
|+.|+++.+ ....++.++.+|.++|.++.|.|.+ .+|++++.|++++||.+........+. |...
T Consensus 338 d~~i~V~kv------------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 338 DGCIHVCKV------------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred CceEEEEEe------------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence 999999999 6778999999999999999999985 999999999999999999888888777 7788
Q ss_pred eeEEEeCCCC---------CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 225 IMGLALDPTE---------TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 225 v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
|..+.|+|+| ..+++++.|+.|++||+.. +.++.. +..|..+|.+++|+|+|+++|+|+.||
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------gv~i~~-f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------GVPIHT-LMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--------CceeEe-eccCCCceEEEEecCCCcEEEecCCCC
Confidence 9999999875 4689999999999999997 444444 447999999999999999999999999
Q ss_pred cEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 296 SVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
.|.+|+.+++++++...+. +.|..++|....
T Consensus 475 ~V~iws~~~~~l~~s~~~~--~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKSYQGT--GGIFELCWNAAG 505 (524)
T ss_pred eeEeccccchheeEeecCC--CeEEEEEEcCCC
Confidence 9999999999999999865 468888887655
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-40 Score=284.94 Aligned_cols=269 Identities=19% Similarity=0.253 Sum_probs=227.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~ 80 (387)
..||+|+.+||.|-.|..|++|.+... .++.+++. ..+.. +-+.+.|-.+.+.|-....... ..
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~l~~-------------~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SDLSN-------------IDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchh-hhccccch-hhhcc-------------ccccccchhhhhccccCCceeEEee
Confidence 358899999999999999999998644 33334321 11111 1113334445555555444333 45
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.|.++|..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|..+.|+|.|-++++++.|++.++|..
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~------ 522 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST------ 522 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec------
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 239 (387)
....+.+.+.+|.+.|.|+.|+|+. .++++||.|.++|+||..+|..++.|. |..+|.+++|+|+|++|++
T Consensus 523 ------d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 523 ------DHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ------ccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 5567888999999999999999996 999999999999999999999999998 8899999999999999999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
|+.||.|.+||+..+. +...+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..-...
T Consensus 595 g~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999843 33334589999999999999999999999999999998765444
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.3e-41 Score=263.43 Aligned_cols=275 Identities=15% Similarity=0.249 Sum_probs=237.4
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V 82 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~ 82 (387)
.--|...+++|..|++|+|||.++..+...+.||++.|.|+.|... .+++|+.|.+|++||+++++++.++- |
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r------viisGSSDsTvrvWDv~tge~l~tlihH 276 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER------VIVSGSSDSTVRVWDVNTGEPLNTLIHH 276 (499)
T ss_pred EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce------EEEecCCCceEEEEeccCCchhhHHhhh
Confidence 3346678999999999999999999999999999999999999874 44559999999999999999999877 4
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
-+.|..+.|+. .++++++.|.++.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 277 ceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~----- 347 (499)
T KOG0281|consen 277 CEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST----- 347 (499)
T ss_pred cceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec-----
Confidence 57899999975 589999999999999997664 334567999999999994 569999999999999999
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 238 (387)
.+...++.+.+|...|.|+.+. ++++++|+.|.+|++||+..|.+++.++ |+.-|.++.| +.+.++
T Consensus 348 -------st~efvRtl~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 348 -------STCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIV 414 (499)
T ss_pred -------cceeeehhhhcccccceehhcc----CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceee
Confidence 7888999999999999988763 5899999999999999999999999998 6778999999 467899
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
+|+.||.|++||+..+.................|.+.|..+.| |...+++++.|.+|.|||+.++-.-
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999986554443333344445679999999999 5678999999999999999887654
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-38 Score=269.27 Aligned_cols=303 Identities=17% Similarity=0.292 Sum_probs=258.1
Q ss_pred ccccCCCcEEEeeCCC-CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPE-GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|+..|+.||.|+.. |.+-||+.++...+...++|...+++++++|++.+. ++|+.||.|++||..++-+..++
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i----aTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI----ATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE----EeccCCCcEEEEeccCceEEEEe
Confidence 4677889999998764 799999999999899999999999999999965554 45999999999999999999988
Q ss_pred C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCcc
Q 035621 81 P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISGGDDG-VIATVPIFQL 157 (387)
Q Consensus 81 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 157 (387)
. |...|+.+.|+..|+.+++.+.||+|+.||+...+..+++... .-...|++..|.|..++.|+.|. .|.+|++
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~--- 465 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV--- 465 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe---
Confidence 7 7789999999999999999999999999999999998888743 34568999999999999999886 5999999
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCe
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETD 236 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 236 (387)
++++.+..+.+|.+||.+++|+|.+ +.|+++|+|.+|++||+-.. ....+++....+..++|+|+|+.
T Consensus 466 ---------qTGqllDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e 534 (893)
T KOG0291|consen 466 ---------QTGQLLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE 534 (893)
T ss_pred ---------ecCeeeehhcCCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCe
Confidence 7889999999999999999999986 89999999999999998654 46677888999999999999999
Q ss_pred EEEEccCCcEEEEecccccccccccc-----------ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKG-----------QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
+++++-||.|.+||.+.........+ ..............+.+++++||.+|++||..+.|++|++.++
T Consensus 535 laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 535 LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999999999987543321111 1111111233467999999999999999999999999999999
Q ss_pred cEEEEeecccCCCceeE
Q 035621 306 QVVMVLKNELAGSISEM 322 (387)
Q Consensus 306 ~~~~~~~~~~~~~v~~~ 322 (387)
-+++.+.-..+-+..++
T Consensus 615 vllkkfqiS~N~sLdg~ 631 (893)
T KOG0291|consen 615 VLLKKFQISDNRSLDGV 631 (893)
T ss_pred heeeeEEeccccchhHH
Confidence 99999876544444443
No 23
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-39 Score=244.87 Aligned_cols=277 Identities=19% Similarity=0.318 Sum_probs=247.0
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE 84 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~ 84 (387)
.|+|-+|++++.||.-.+-+-.+|..+.+|.+|.+.|++...+.+ +..-++++.|-+.++||.-+|..++.+.|..
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n----a~~aasaaadftakvw~a~tgdelhsf~hkh 101 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN----ATRAASAAADFTAKVWDAVTGDELHSFEHKH 101 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch----hhhhhhhcccchhhhhhhhhhhhhhhhhhhh
Confidence 368999999999999999999999999999999999999999884 4455569999999999999999999999999
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
-|..++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~--------- 172 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH--------- 172 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe---------
Confidence 99999999999999999999999999997653 56678899999999999998899999999999999999
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
.++..++++. ...+|+++.+++++ ++ ++-...+.|.+||..+...++.+..+..|.+..++|+...+++|++|
T Consensus 173 ---rTgt~v~sL~-~~s~VtSlEvs~dG--~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 173 ---RTGTEVQSLE-FNSPVTSLEVSQDG--RI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred ---ccCcEEEEEe-cCCCCcceeeccCC--CE-EEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc
Confidence 5666677665 46789999999885 55 45556788999999999999999999999999999999999999999
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
..++.||..++ .++....++|.++|.|+.|+|+|...++|++||+|++|....++...
T Consensus 246 ~~~~kfDy~Tg--------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 246 FKVYKFDYNTG--------EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred eEEEEEeccCC--------ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 99999999984 44444456899999999999999999999999999999988776553
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-38 Score=243.85 Aligned_cols=272 Identities=17% Similarity=0.236 Sum_probs=233.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC-CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS-SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
+.|+|+|.+||+|+.|..|.+|++. .-+....+++|.++|..+.|.++ .+.+++++.|.+++.||.++|+..+.+
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----~s~i~S~gtDk~v~~wD~~tG~~~rk~ 128 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----GSHILSCGTDKTVRGWDAETGKRIRKH 128 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC----CCEEEEecCCceEEEEecccceeeehh
Confidence 4799999999999999999999954 44567788999999999999994 455666999999999999999999888
Q ss_pred C-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 81 P-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 81 ~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
+ |..-|+.+.-+.-| .++.+++.|+++++||+++.+.++++. .+..++++.|..++..+++|+-|+.|++||+
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~---- 203 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDL---- 203 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeecc----
Confidence 8 45567777744444 456678899999999999999888875 4678999999999999999999999999999
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC----cEEEEEe-----cCCceeEEE
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG----THLSTVT-----FPCAIMGLA 229 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-----~~~~v~~~~ 229 (387)
........+.+|.++|+.+..++++ .++.+-+.|.++++||++.. .++..+. .......++
T Consensus 204 --------r~~d~~~~lsGh~DtIt~lsls~~g--s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 204 --------RKNDGLYTLSGHADTITGLSLSRYG--SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred --------ccCcceEEeecccCceeeEEeccCC--CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 5667889999999999999999885 89999999999999999853 3355554 234567889
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
|+|++..+-+|+.|..+++||... ..+...+.+|.+.|++++|+|...+|.+++.|.+|++=+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~---------r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTS---------RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccCCCCccccccccceEEEeeccc---------ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999999999886 355556679999999999999999999999999998743
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=267.32 Aligned_cols=273 Identities=15% Similarity=0.235 Sum_probs=233.4
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCC-CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSS-GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|++ ....+.+++.|+.+++||+++|+++..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc----cCCeeeeeecceeeeeeccccceEEEE
Confidence 46777 789999999999999999976 899999999999999999999 445566699999999999999999999
Q ss_pred cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 80 IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 80 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+++++|+.+.
T Consensus 296 f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-- 373 (503)
T KOG0282|consen 296 FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-- 373 (503)
T ss_pred EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC--
Confidence 9999999999999988 8899999999999999999999999999999999999999999999999999999999843
Q ss_pred ccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE---EEEe---cCCceeEEEeC
Q 035621 159 DEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL---STVT---FPCAIMGLALD 231 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~---~~~~v~~~~~~ 231 (387)
...++. ...+.....++..+|.. .+++.-+.|..|.+|.+...-.+ ..+. ..+.-..+.||
T Consensus 374 ----------~v~ik~i~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 374 ----------PVPIKNIADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred ----------CccchhhcchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 222221 22233456678888875 89999999999999987543222 1222 35667889999
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEE
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWE 301 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 301 (387)
|||.+|++|+.||.+.+||.++ ..+...+..|.+++..+.|+|.. ..+||++.||.|++|+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt---------~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKT---------TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechh---------hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999998 33444456899999999999964 5899999999999996
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.7e-37 Score=261.13 Aligned_cols=273 Identities=22% Similarity=0.381 Sum_probs=239.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++++.||.|++|+..+++....+..|...+..+.|.++. ..+++++.+|.+++|++.+++....+.
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC----CEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 5799999999999999999999999988888889999999999999965 344558889999999999877766665
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
+...+.++.|+++++++++++.+|.+.+||+++++....+..|...+.+++|+|++.++++++.|+.|++||+
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~------ 164 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL------ 164 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc------
Confidence 4568999999999888988888999999999989888888889999999999999989988888999999999
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceeEEEeCCCCCeEEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-TFPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 239 (387)
........+..|...+.++.|+|++ +.+++++.|+.+++||+++++.+..+ .+...+.+++|+|++.++++
T Consensus 165 ------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 165 ------RTGKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred ------cccccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 4455667777888899999999885 78888888999999999999988888 47779999999999888888
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
++.+|.|++|++... .....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888999999999862 22222347888999999999999999999999999996
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=251.23 Aligned_cols=256 Identities=21% Similarity=0.351 Sum_probs=227.8
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
.+..+.+++|.+.|.|+++.|. ..++++|+.|++++|||+.++++..++. |-+.|..+++++-..|+++++.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 3455677899999999999994 4566679999999999999999998888 7789999999999999999999999
Q ss_pred EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
|+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+ .....+..+.+|..+|.++.
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDi------------Rtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI------------RTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeee------------cccceEEEecCCCCcceeEE
Confidence 999999999999999999999999999999999999999999999999 57778899999999999999
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL 265 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 265 (387)
+.|.. ..+++|+.|++|++||++.++....+. |...+.+++.+|....+++++.| .|+-|++..+.. +
T Consensus 285 ~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f--------~ 353 (460)
T KOG0285|consen 285 CQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF--------L 353 (460)
T ss_pred eecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch--------h
Confidence 98774 789999999999999999999888877 67889999999999888888876 688899887432 2
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.. +.+|...|++++...|+ ++++|+..|.+.+||.++|...+.+.
T Consensus 354 ~n-lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 354 QN-LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred hc-cccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence 22 45899999999998775 88999999999999999997776653
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-38 Score=270.16 Aligned_cols=367 Identities=17% Similarity=0.206 Sum_probs=284.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++.+||+++|++++..+.+++|++.+++.++.++. |+.||.-++|+|.. ..+++|+.|+.+++||+..+.+...+
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g----~LlAtggaD~~v~VWdi~~~~~th~f 143 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG----TLLATGGADGRVKVWDIKNGYCTHSF 143 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC----ceEEeccccceEEEEEeeCCEEEEEe
Confidence 46789999999999999999999999999999988 99999999999954 45556999999999999999999999
Q ss_pred C-CCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 81 P-VPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 81 ~-~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
+ |++.|..+.|+|+-+ .|++|..|+.+++||+++.. ++..+..|...|++++|.+|+..+++++.|..+.+||+.+
T Consensus 144 kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 144 KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 8 589999999999754 58899999999999998554 4788889999999999999999999999999999999842
Q ss_pred ccccCCC------------------------------------------------C-CC---------------------
Q 035621 157 LVDEHTD------------------------------------------------D-KN--------------------- 166 (387)
Q Consensus 157 ~~~~~~~------------------------------------------------~-~~--------------------- 166 (387)
....... + ..
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence 2100000 0 00
Q ss_pred -------------------------------------------------CCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 167 -------------------------------------------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 167 -------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
......+.+.+|...|.++....+ |.+|+
T Consensus 304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~--g~lla 381 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS--GDLLA 381 (775)
T ss_pred eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc--CcEEE
Confidence 000111234678888888884444 47999
Q ss_pred EEeCCCcEEEEeCCCCcEE----EEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621 198 SCSMDCTCKFWRLLNGTHL----STVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR 271 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 271 (387)
||+.|.++++|.++++... .... |...|.+++++..+ .++++++.|+++++|++....................
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 9999999999988554332 2222 77899999998766 6788899999999999987322221111122223457
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe--------cCCCceeeEEEecCCCC
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT--------GIGGSRGCGVVKTGKAG 343 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~ 343 (387)
|...|++++.+|+.+++|||+.|.+.+||+++..+++..+.+|.. .|.++-|++ +.|..+++|-+.++..-
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence 999999999999999999999999999999999999999999965 677775554 34555799988877653
Q ss_pred CCCCCcc-------eeeeccceeccccccchhhhceeee
Q 035621 344 NDSGGGV-------FEMYGEKLLDLSIKNTIELENVMTV 375 (387)
Q Consensus 344 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (387)
.+..++. +.--+.+.++..+++.+++|+.-+-
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 3222222 2234556777779999999998543
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=276.02 Aligned_cols=275 Identities=21% Similarity=0.349 Sum_probs=239.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~~ 78 (387)
+.|+|+|+.+++++.++.+++|+..+.+ ....+.+|...|.+++|+|++. .+++++.|+++++||+ ..+..++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc----EEEEecCCceEEEeeccCCCeEEE
Confidence 4799999999999999999999998877 7888899999999999999665 4555999999999999 5557777
Q ss_pred ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
.+. |...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|++++++|++++.|+.|++||+.
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-- 318 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-- 318 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC--
Confidence 775 78899999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred cccCCCCCCCCcc--ceEeeeccCCC--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC---ceeEEE
Q 035621 158 VDEHTDDKNPDDL--MLQKFVAHNDS--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC---AIMGLA 229 (387)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~v~~~~ 229 (387)
... +...+..+... ++++.|+|++ .++++++.|+.+++||+..+.....+. +.. .+.+..
T Consensus 319 ----------~~~~~~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 319 ----------TGSKLCLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ----------CCceeeeecccCCCCCCceeEEEECCCC--cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 344 34566666555 9999999885 999999999999999999998888876 333 344556
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIE 303 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 303 (387)
.++.+.++++|+.|+.|++|++.+.. ....+.+| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~---------~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGG---------ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccc---------hhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 68899999999999999999999732 22334478 88899999999999999988 78999999754
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-37 Score=243.96 Aligned_cols=288 Identities=16% Similarity=0.224 Sum_probs=238.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++.+|+.++++||+.|..-.+|+..++....++.+|...|+++.|+.++.+ ++||..+|.|+||+..++.....+.
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl----LATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL----LATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE----EEecCCCccEEEEEcccCceEEEee
Confidence 467899999999999999999999999999999999999999999996555 4559999999999999998877775
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.-+.+.-+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|+.++++=.|.|+|+.++++..||+|++|++......
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 4467888999999999999999999999999998888999999999999999999999999999999999999654222
Q ss_pred CCCCC-------------------------------CCCccceEeee--------ccCCCeEEEEEeeCCC-CceEEEEe
Q 035621 161 HTDDK-------------------------------NPDDLMLQKFV--------AHNDSVTAITCCIGSF-NSIIISCS 200 (387)
Q Consensus 161 ~~~~~-------------------------------~~~~~~~~~~~--------~~~~~i~~~~~~~~~~-~~~l~s~~ 200 (387)
..... ...++.+.... .+...+.++.+.|... =.+.++|+
T Consensus 226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence 11110 00111111111 2223333444333321 15788999
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621 201 MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280 (387)
Q Consensus 201 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 280 (387)
-||+|.|||+...+..+...|+.+|..+.|-+ ..+|++++.+|.|+.||.+++ .+...+.+|...|.+++
T Consensus 306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILDFA 375 (399)
T ss_pred ccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc---------ceEEEEecCchheeEEE
Confidence 99999999999999988999999999999999 889999999999999999983 33444569999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 035621 281 MMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 281 ~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
++|++++++|++.|++.+||++.
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999875
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-38 Score=264.50 Aligned_cols=284 Identities=14% Similarity=0.183 Sum_probs=251.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|+|....++++-.+|.|.|||.++...++.+.-..-||++..|-+ --.++++|+.|..|++|+.++++.+..+.
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt~ekV~~Fe 94 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNTGEKVKTFE 94 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee----ccceEEEecCCceEEEEecccceeeEEee
Confidence 57899999999999999999999999999999998889999999988 34566679999999999999999999998
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
|++-|.+++.+|...++++++.|-.|++||.+.. .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+
T Consensus 95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl---- 170 (794)
T KOG0276|consen 95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL---- 170 (794)
T ss_pred ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc----
Confidence 7889999999999999999999999999999765 67889999999999999999 6779999999999999999
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF 237 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 237 (387)
....+..++.+|...|+++.+-+.++..+|++|+.|.+++|||..+.+|++++. |...|..+.|+|.-..+
T Consensus 171 --------gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 171 --------GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred --------CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 677788999999999999999999888999999999999999999999999998 78899999999999999
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
++|+.||++++|...+... ...+.-.-.++++++-.+.++.++.|..+|.|. ..+...++...+
T Consensus 243 isgsEDGTvriWhs~Ty~l---------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsM 306 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKL---------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSM 306 (794)
T ss_pred EEecCCccEEEecCcceeh---------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceee
Confidence 9999999999999887322 222334567899999998888888888777654 344444444333
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-38 Score=248.13 Aligned_cols=273 Identities=17% Similarity=0.234 Sum_probs=238.6
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
...+.+.+|..+|+.+-|+|...+.+ +++.|++|++||..+++....++ |.+.+..++|+..|+++++++.|-.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~----~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVV----SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEE----EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 34556678999999999999655554 48899999999999999988877 66789999999999999999999999
Q ss_pred EEEeCCC-CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 108 YAISVPK-GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 108 ~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
.+||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++ .++.++.++.+|...|..++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~------------~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC------------DTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec------------ccceeEEeccCchHhEEEEE
Confidence 9999876 5677888899999999999999999999999999999999 78889999999999999988
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC---------------CCeEEEEccCCcEEEEe
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT---------------ETDFFAAGSDGLIYKGL 250 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d 250 (387)
...+ |.++++++.|.++++|-+.++++...+. |+.+|.+++|.|. +.++.+++.|+.|++||
T Consensus 243 v~~D--Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 243 VNQD--GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred ecCC--eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 7665 5999999999999999999998877776 7788899998763 25899999999999999
Q ss_pred ccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCC
Q 035621 251 LKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIG 329 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (387)
+.++ .+.-.+.+|...|..++|+|.|+||+++..|+++++||++++++...+..| ..-++++.|....+
T Consensus 321 v~tg---------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 321 VSTG---------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAP 389 (406)
T ss_pred ccCC---------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCc
Confidence 9983 333445689999999999999999999999999999999999999999866 44777776654443
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-37 Score=228.37 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=236.4
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
....+..+.++|+++.|+.++.+.. +++.|.+|++|+...+.+++++. |...|..++.+.|+..+++|+.|..+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~l----tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCL----TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred hceeecccccceEEEEEccCCCEEE----EcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence 4566788999999999999665554 49999999999999999999998 667899999999999999999999999
Q ss_pred EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
+||+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+. ...++++.+......|.++.+.
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS----------~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS----------RSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc----------CCCCccchhhhhcCceeEEEec
Confidence 999999999999999999999999999999999999999999999976 5667888888888999999875
Q ss_pred eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621 189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268 (387)
Q Consensus 189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 268 (387)
. ..+++|+.||+++.||++.|+....+ ...+|++++|+++++..++++.|+.+++.|-.+++.....
T Consensus 155 ~----heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-------- 221 (307)
T KOG0316|consen 155 E----HEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-------- 221 (307)
T ss_pred c----cEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh--------
Confidence 3 67999999999999999999765433 6789999999999999999999999999999886544333
Q ss_pred ccccccc--EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621 269 ANRHDGV--VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331 (387)
Q Consensus 269 ~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 331 (387)
.+|... -..++++.....+++|++||.|++||+.+...+..+..+..-.++.+.+-+..+..
T Consensus 222 -kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 222 -KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred -cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 355543 34567777778999999999999999999999999987765447777766655553
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=231.09 Aligned_cols=286 Identities=15% Similarity=0.200 Sum_probs=238.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|+.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+++..+. ....+++|+.|.++++||+++|+++..++
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~----~s~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW----DSKHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC----CcceeeeccccceeEEEEcCCCcEEEEee
Confidence 46888999999999999999999889999999999999999999988 45567779999999999999999999999
Q ss_pred CCCCeeeEEeccCCCEEEEec-----CCCcEEEEeCC-------CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621 82 VPEPVAPLATTADGSYLFTGG-----LSGNVYAISVP-------KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 149 (387)
.+.+|..+.|+++|++++... ..+.|.++|++ ..++...+..+...++.+-|.|-+++|++|.+||.|
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i 171 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI 171 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence 999999999999999888765 34679999997 445677788888999999999999999999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLA 229 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~ 229 (387)
..||+++ ....+..-..|...|+.+.++++. .++++++.|.+-++||+++.+.++++....++++.+
T Consensus 172 s~~da~~-----------g~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 172 SIYDART-----------GKELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEEccc-----------CceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 9999942 234556667899999999999885 999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEccCCcEEEE--eccccccccc----cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 230 LDPTETDFFAAGSDGLIYKG--LLKYQSRQQM----HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
++|....++.|+.....-+= +.+.+..... .-..++. -.++|-++|++++|+|+|+..++|++||.|++..++
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig-rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG-RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc-cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 99998888887653322221 1111100000 0011222 235899999999999999999999999999998766
Q ss_pred Cc
Q 035621 304 KR 305 (387)
Q Consensus 304 ~~ 305 (387)
..
T Consensus 318 ~~ 319 (327)
T KOG0643|consen 318 SN 319 (327)
T ss_pred cc
Confidence 43
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=258.26 Aligned_cols=284 Identities=16% Similarity=0.240 Sum_probs=241.8
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecccc-CCCCCeEEEEEccCCCcccccC
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISP-TTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+|++..++||+|-..|...+|++....+++.+.-...+|..++|+..+ .+++. ++.-|++-||++++...+...+
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG----DWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG----DWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC----CEEEEcCCccceEEEEEeeccceeeecc
Confidence 688889999999999999999999999999998888899999999733 33333 4455899999999887766555
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|-..+.+++++|||+++++|+.||.|++||..++-|+.++..|+..|+.+.|+..++.+++++-||+|+.||+
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl------ 421 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL------ 421 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee------
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621 161 HTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF 237 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 237 (387)
......+++.... ....+++..|. |.+++.|+.|. .|.+|++++|+.+-.+. |.++|.+++|+|++..|
T Consensus 422 ------kRYrNfRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 422 ------KRYRNFRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred ------cccceeeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence 4555556654332 23446666555 58888888876 59999999999999887 88999999999999999
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
++++.|.+|++||+-... ...+.+ .+...+..++|+|+|+-|++++.||.|.+||.+.+..+..+.+
T Consensus 494 aS~SWDkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EeccccceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 999999999999997632 112222 4677899999999999999999999999999999888766654
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.5e-36 Score=284.77 Aligned_cols=282 Identities=17% Similarity=0.217 Sum_probs=225.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC----c----eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG----A----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~ 73 (387)
++|+|+|++||+|+.|+.|+|||..+. . ....+. +...+.+++|++. ....+++++.||+|++||+.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCC
Confidence 579999999999999999999997532 1 122333 3457899999873 123456689999999999998
Q ss_pred CCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-CCCCEEEEEeCCCcEE
Q 035621 74 STPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-PDGSLLISGGDDGVIA 150 (387)
Q Consensus 74 ~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 150 (387)
++.+..+. |...|.+++|+| ++.+|++|+.||.|++||+++++.+..+..+ ..+.++.|+ +++.+|++|+.||.|+
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 88777765 778899999997 7899999999999999999999988888754 679999995 5789999999999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC------cEEEEEe-cCC
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG------THLSTVT-FPC 223 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~~ 223 (387)
+||++. .......+.+|...|.++.|.+ +.+|++++.|++|++||++.+ .++..+. |..
T Consensus 644 iwD~~~-----------~~~~~~~~~~h~~~V~~v~f~~---~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 644 YYDLRN-----------PKLPLCTMIGHSKTVSYVRFVD---SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred EEECCC-----------CCccceEecCCCCCEEEEEEeC---CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 999942 1224566778999999999963 378999999999999999753 4566665 667
Q ss_pred ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc---ccee-EeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK---GQEL-VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
.+.+++|+|++.+|++|+.|+.|++|+........... .... ......|...|.+++|+|++..|++|+.||.|+|
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 88999999999999999999999999976532211100 0000 0012345678999999999999999999999999
Q ss_pred EEC
Q 035621 300 WEI 302 (387)
Q Consensus 300 wd~ 302 (387)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 986
No 37
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=246.65 Aligned_cols=306 Identities=29% Similarity=0.487 Sum_probs=251.6
Q ss_pred EeeCCCC-cEEEEeCCCCceeEeccCC-CCCceeEE-EcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCee
Q 035621 12 LTSSPEG-PITAYNPSSGAILAHFSGS-RSPRRGLT-FAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVA 87 (387)
Q Consensus 12 ~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~ 87 (387)
.+++.|. ++.+||+.||....++++. ...-.++. ..+...+.+ ......+.+|.+....... .+..++++.
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsa-----q~~rp~l~vw~i~k~~~~~q~~v~Pg~v~ 85 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSA-----QLKRPLLHVWEILKKDQVVQYIVLPGPVH 85 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeee-----cccCccccccccCchhhhhhhccccccee
Confidence 3444444 4999999999999888765 32222332 222222222 2345589999997765554 455789999
Q ss_pred eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+......... .
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~---~ 162 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND---H 162 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998665444322 2
Q ss_pred CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 247 (387)
...+...+..|.-+|+++...+.+...+++|+|.|.++++||+..+..+.++..+..+.+++.+|.+..+++|+.+|.|.
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEE
Confidence 66788999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccc-------cccceeEeecccccc--cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621 248 KGLLKYQSRQQM-------HKGQELVTLANRHDG--VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 248 i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
+.++........ .........+.+|.+ .|+|++.+-||..|++|+.||.|+|||+.+.++++++.. ..++
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-~kgp 321 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-SKGP 321 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-hccc
Confidence 998876542211 112233344568888 999999999999999999999999999999999999874 5679
Q ss_pred ceeEEEEe
Q 035621 319 ISEMVIAT 326 (387)
Q Consensus 319 v~~~~~~~ 326 (387)
|+.+.+.+
T Consensus 322 VtnL~i~~ 329 (476)
T KOG0646|consen 322 VTNLQINP 329 (476)
T ss_pred cceeEeec
Confidence 99998844
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=257.14 Aligned_cols=266 Identities=18% Similarity=0.224 Sum_probs=237.5
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
+.+..++..|.++.++| ...++.++-.+|.|.|||.++...++.+.. ..||.+..|-+..+++++|+.|..|++|
T Consensus 7 rk~~~rSdRVKsVd~HP----tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHP----TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hHhhccCCceeeeecCC----CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 45566889999999999 333444467899999999999999999985 4689999999999999999999999999
Q ss_pred eCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621 111 SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG 190 (387)
Q Consensus 111 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (387)
+..+++.++.|.+|...|++++.+|...++++++.|-.|++||..+ ...+.+.+.+|...|++++|.|.
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----------~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----------EWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----------ceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999853 55678899999999999999998
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC--CeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621 191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
. .+.+++++.|++|++|.+.+..+..+++ |...|+++.+-+.| .+|++|+.|..|++||.++ +.+.+
T Consensus 152 D-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------k~CV~ 221 (794)
T KOG0276|consen 152 D-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------KSCVQ 221 (794)
T ss_pred C-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch---------HHHHH
Confidence 4 6899999999999999999999998888 78899999999865 7999999999999999998 34455
Q ss_pred ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621 268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMV 323 (387)
Q Consensus 268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 323 (387)
.+.+|...|..+.|+|.-..+++|++||++|||+..+-++...+.-... .++++.
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle-RvW~I~ 276 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE-RVWCIA 276 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc-eEEEEe
Confidence 5679999999999999999999999999999999999988887765543 777775
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=249.08 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=228.8
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG 115 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 115 (387)
-..+|..+.|.|+ +..|++|+..|.+.+|+...-.....+ .|..+|.++.|+++|.++++|+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtPe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcCC----CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3456999999994 445566999999999998544333333 38899999999999999999999999999997544
Q ss_pred ceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621 116 DILRSFSAH-DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 116 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (387)
. ++.+.+| ...|++++|+|+...+++++.||+|+|||. ...+.-..+.+|.-.|.+++|+|.. .
T Consensus 171 n-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf------------~~~kee~vL~GHgwdVksvdWHP~k--g 235 (464)
T KOG0284|consen 171 N-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF------------RMPKEERVLRGHGWDVKSVDWHPTK--G 235 (464)
T ss_pred h-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec------------cCCchhheeccCCCCcceeccCCcc--c
Confidence 4 4455554 489999999999999999999999999999 3444556678999999999999996 8
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
++++++.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..++++|+++.. ++ ..+++|.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk--------El-~~~r~Hk 306 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK--------EL-FTYRGHK 306 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH--------HH-HHhhcch
Confidence 99999999999999999999999887 78899999999999999999999999999999632 22 2235899
Q ss_pred ccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE-------EEEecCCCc-eeeEEEe
Q 035621 274 GVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM-------VIATGIGGS-RGCGVVK 338 (387)
Q Consensus 274 ~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~-~~~~~~~ 338 (387)
..|+++.|+|- ..+|.+|+.||.|..|.+...+++..+...+.+.|++| .+++++.+. +..|.-.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999995 45888999999999999998899999988888999988 445555443 4666544
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-37 Score=246.33 Aligned_cols=274 Identities=15% Similarity=0.163 Sum_probs=226.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+.||++|++||+++.|.+..||++... +...++.+|..+|..+.|+|+..+ +++++.+..+.+||+.+|....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdry----LlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRY----LLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCe----EEecCchHheeeccCCcchhhh
Confidence 679999999999999999999998644 447888999999999999995444 4458999999999999999999
Q ss_pred ccCCC--CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 79 NIPVP--EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 79 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
.+++. ..+.+++|.|||..+++|+.|+.+..||+. |+....+++-. ..|.+++..+||+++++.+.|..|++++..
T Consensus 306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 88865 789999999999999999999999999984 55555555433 569999999999999999999999999883
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDP 232 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~ 232 (387)
. .... .+.....+|++++.+.++ .++++.-.+..+++||++....++.+.. ...+..-||--
T Consensus 385 ~------------~~dr-~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 385 A------------RVDR-GLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred h------------hhhh-ccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 2 2121 133455789999888774 8888888999999999998877777652 23455556654
Q ss_pred -CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCC
Q 035621 233 -TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 233 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 304 (387)
+..++++|+.|+.|++|+..+ ..+...+.+|...|++++|+|.. .++|+++.||+||||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~s---------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRIS---------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccC---------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 458999999999999999987 34455567999999999999954 5899999999999998764
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.5e-37 Score=240.74 Aligned_cols=272 Identities=17% Similarity=0.275 Sum_probs=238.7
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEecc--------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFS--------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
.|||||++|++|+.||-|.+||..+|+....++ -+..+|.|+.|+.+ ...+++|+.||.|++|.+++|
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD----sEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD----SEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc----HHHhhccCcCCcEEEEEEecc
Confidence 599999999999999999999999998765543 36788999999994 445666999999999999999
Q ss_pred CcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 75 TPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 75 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
.+++.+. |...|+|+.|+.|+..+++++.|.++++.-+++|++++.+++|...|+...|.++|..+++++.||+|++|
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 9999987 77899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCcee
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIM 226 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~ 226 (387)
+. .+..++.+++. ...+|+++...|.. ...++.|....++.|.++ .|+.++++. ..+...
T Consensus 376 ~~------------KtteC~~Tfk~~~~d~~vnsv~~~PKn-peh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 376 HG------------KTTECLSTFKPLGTDYPVNSVILLPKN-PEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cC------------cchhhhhhccCCCCcccceeEEEcCCC-CceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceE
Confidence 98 55666666654 44578888888875 577888889999999997 477888886 345678
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+.+.+|.|.++++.+.|+.++.|...++. +...+..|...|..++-+|..+.||+-++||.+++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999988743 3334457899999999999999999999999999995
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-36 Score=261.77 Aligned_cols=286 Identities=15% Similarity=0.213 Sum_probs=238.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|....++++-..|.|++||..-+.++..|..|.++|+.++|+|... .+++|+.|-.|++|+..+.+++.++.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC----eEEecCCccEEEEEecccceehhhhc
Confidence 68999999999999999999999999999999999999999999999544 44559999999999999999988776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|-+-|..+.|++.-.++++++.|.+|+||+..+++++..+.+|...|.|.+|+|....++++|-|.+|++||+..+...
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence 6688999999999999999999999999999999999999999999999999999999999999999999999654333
Q ss_pred CCCCC-----------------CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EE-e
Q 035621 161 HTDDK-----------------NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TV-T 220 (387)
Q Consensus 161 ~~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-~ 220 (387)
...+. .......+.+.+|...|+-++|+|.- .++++|+.|+.|++|.+...+.-. +. .
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcrg 248 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCRG 248 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--ceEEecCCcceeeEEEeccccceeehhhhc
Confidence 22221 01122345578999999999999986 899999999999999987655322 22 2
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
|.+.|.++-|+|..+.+++.+.|+.|++||+..-.. ...+......-+.++-+|..+++++| .|+-+.+|
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~---------v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS---------VQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccccc---------eeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 778999999999999999999999999999987322 22223345667778888877776665 44456666
Q ss_pred ECC
Q 035621 301 EIE 303 (387)
Q Consensus 301 d~~ 303 (387)
.++
T Consensus 319 kle 321 (1202)
T KOG0292|consen 319 KLE 321 (1202)
T ss_pred EEc
Confidence 655
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=220.22 Aligned_cols=270 Identities=15% Similarity=0.205 Sum_probs=221.6
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---cccccC--CCCCeeeEEeccCCCEEEEecC
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLHNIP--VPEPVAPLATTADGSYLFTGGL 103 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 103 (387)
..++.+++|.+.+..++|+|.. +..+++++.|..|++|+...+. +...+. |...|..++|+|.|++|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 3467789999999999999951 2345569999999999987533 222222 7789999999999999999999
Q ss_pred CCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 104 SGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 104 dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
|.++.||.-..+ +++..+++|...|.|++|+++|++|++++.|++|-+|.+... ....+...++.|...
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---------dEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED---------DEFECIAVLQEHTQD 152 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---------CcEEEEeeecccccc
Confidence 999999987654 678889999999999999999999999999999999988421 355678889999999
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
|..+.|+|.. .+|++++.|.+|++|+-. ...+..++. +...|.+++|++.|..|++++.|+.++||...+.
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--- 227 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--- 227 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---
Confidence 9999999986 899999999999999876 335777777 6679999999999999999999999999986531
Q ss_pred cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc------cEEEEeecccCCCceeEEEEec
Q 035621 258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR------QVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+..-|...+..+.|. ...|++++.|+.|++|.-... +++......+.-.|+++.+.++
T Consensus 228 ----------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 228 ----------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred ----------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 122588899999998 458999999999999986643 2333333344457888877763
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.8e-36 Score=260.39 Aligned_cols=224 Identities=20% Similarity=0.257 Sum_probs=204.6
Q ss_pred eeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEe
Q 035621 13 TSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLAT 91 (387)
Q Consensus 13 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~ 91 (387)
+.+.|-.+...|-.+.....++.+|.++|....|+|+..++ ++++.|+++++|.+.+...+-.++ |..||.++.|
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL----lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL----LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCCCceeeeeecccccce----eeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence 44555557777877777788899999999999999965544 459999999999999998877777 6689999999
Q ss_pred ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621 92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
+|.|-++|+++.|++.++|......+.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||+ .++..
T Consensus 502 ~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv------------~~G~~ 569 (707)
T KOG0263|consen 502 APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV------------STGNS 569 (707)
T ss_pred cCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEc------------CCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999 67888
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEe
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGL 250 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 250 (387)
++.|.+|.++|.+++|+|.+ .+|++|+.||.|.+||+.+++.+..+. |.+.|.++.|+.+|..|++|+.|..|++||
T Consensus 570 VRiF~GH~~~V~al~~Sp~G--r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 570 VRIFTGHKGPVTALAFSPCG--RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEecCCCCceEEEEEcCCC--ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999999999999999975 999999999999999999999887776 788999999999999999999999999999
Q ss_pred cccc
Q 035621 251 LKYQ 254 (387)
Q Consensus 251 ~~~~ 254 (387)
+...
T Consensus 648 ~~~~ 651 (707)
T KOG0263|consen 648 LTKV 651 (707)
T ss_pred chhh
Confidence 9763
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=219.31 Aligned_cols=268 Identities=15% Similarity=0.243 Sum_probs=225.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|+-||++.++++.|.+|++||+..|.+++++.+|...|..++.+. ..+.+++++.|..+.+||+++|+..+.+.
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~----Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS----DNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc----cccccccCCCCceEEEEEcccCeeeeecc
Confidence 56889999999999999999999999999999999999999999887 44567779999999999999999999988
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
|...|+.+.|+.+...+++|+.|..+++||.++. ++++.+......|.++..+ +..+++|+.||+++.||++
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR--- 173 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR--- 173 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee---
Confidence 6789999999999999999999999999999765 6788888888899999985 5679999999999999994
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC--CceeEEEeCCCCC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP--CAIMGLALDPTET 235 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--~~v~~~~~~~~~~ 235 (387)
.+...... -..+|++++|++++ +..+.++.|+++++.|-.+|+.+..+. |. ..-..++++....
T Consensus 174 ---------~G~l~sDy--~g~pit~vs~s~d~--nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 174 ---------KGTLSSDY--FGHPITSVSFSKDG--NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred ---------cceeehhh--cCCcceeEEecCCC--CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 33333333 34689999999986 889999999999999999999998887 33 2345678888889
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeeccccccc-EEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV-VVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
.+++|++||.+++||+... ..+.. +..+... |.++.++|.-..|+++. ++.+..|-
T Consensus 241 hV~sgSEDG~Vy~wdLvd~--------~~~sk-~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDE--------TQISK-LSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eEEeccCCceEEEEEeccc--------eeeee-eccCCceeEEeeecccCccceeEec-CCceecee
Confidence 9999999999999999873 22222 3345555 89999999887777775 34566664
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=255.98 Aligned_cols=265 Identities=22% Similarity=0.390 Sum_probs=222.4
Q ss_pred eccCC-CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--ccccc-CCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 33 HFSGS-RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 33 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
.+..| ...|.++.|++++...+ +++.++.+++|+....+ ....+ .|...|.+++|+|+++++++++.|++|+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~----~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALA----AASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eecccccCceEEEEEcCCCCeEE----EccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 34343 67799999999665544 48999999999997776 55554 4778899999999999999999999999
Q ss_pred EEeC-CCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 109 AISV-PKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 109 i~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
+||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+ ....+...+.+|.+.|++++|
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~------------~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV------------RTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec------------cCCeEEEeeeccCCceEEEEE
Confidence 9999 555889999999999999999999999999999999999999 668899999999999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe-cCC--ceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT-FPC--AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 262 (387)
.+++ ++|++++.|+.|++||+.++. +...+. ... .+++++|+|++.++++++.|+.+++||+......
T Consensus 297 ~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~----- 369 (456)
T KOG0266|consen 297 SPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV----- 369 (456)
T ss_pred CCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----
Confidence 9885 999999999999999999999 455554 222 6899999999999999999999999999974322
Q ss_pred ceeEeecccccc---cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 263 QELVTLANRHDG---VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 263 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
.. ..+|.. .+.+...++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.+
T Consensus 370 ---~~-~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 370 ---GT-YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred ---ee-ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 22 224444 34455567899999999999999999999999999999884435544433
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-35 Score=225.47 Aligned_cols=275 Identities=20% Similarity=0.288 Sum_probs=226.5
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cccccc-CCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
+..+.+|.+.|+.+.|+|+ .+.+++++.|..|.+|++... +-...+ .|.+.|..+.|.+|++.+++++.|.+++
T Consensus 40 ~m~l~gh~geI~~~~F~P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hhhcCCCcceEEEEEECCC----CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 4456899999999999994 455666999999999996332 233333 3788999999999999999999999999
Q ss_pred EEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 109 AISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
.||+++|+.++.+++|..-|+++.-+.-| .++.+++.||++++||++ ....++.+. ....++++.|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R------------~k~~~~t~~-~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR------------KKEAIKTFE-NKYQLTAVGF 182 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec------------ccchhhccc-cceeEEEEEe
Confidence 99999999999999999999999855434 477788999999999994 333444432 3456888888
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV 266 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 266 (387)
...+ ..+.+|+-|+.|++||++....+..+. |..+|+.+..+|+|.++.+-+.|..+++||++.... .+..+
T Consensus 183 ~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v 255 (338)
T KOG0265|consen 183 KDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCV 255 (338)
T ss_pred cccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceE
Confidence 7775 789999999999999999999999888 788999999999999999999999999999987432 22323
Q ss_pred eeccccc----ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621 267 TLANRHD----GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG 330 (387)
Q Consensus 267 ~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (387)
..+.+|. .....++|+|++..+..|+.|..+++||......+..+++| .+.|.++.|-+-.+-
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPI 322 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcE
Confidence 3333332 23567799999999999999999999999999999999998 469999988775543
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-35 Score=247.80 Aligned_cols=275 Identities=21% Similarity=0.299 Sum_probs=238.2
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++.|+ ..+.||+|.. ..|++|+..++........+...|+++.|++++. .|+.|..+|.|.|||..+.+.+..+
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccc
Confidence 46788 4456777654 5799999999987666665688899999999554 4455999999999999988888777
Q ss_pred CC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 81 PV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 81 ~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
.. ...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.|||.
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~--- 330 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG--- 330 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC---
Confidence 64 6789999998 57899999999999999998876655 8899999999999999999999999999999999
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe--CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS--MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET 235 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 235 (387)
....+...+..|...|.+++|+|.. ..+||+|+ .|+.|++||..++..+..+.....|.++.|++..+
T Consensus 331 ---------~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 331 ---------LSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred ---------CCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 5667888999999999999999986 57888876 49999999999999999999999999999999998
Q ss_pred eEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 236 DFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 236 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
.|+++. .++.|.||+..+ ......+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 401 Ei~sthG~s~n~i~lw~~ps---------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPS---------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecCCCCCcEEEEeccc---------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 888753 478999999987 2333445689999999999999999999999999999998875
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.7e-36 Score=244.79 Aligned_cols=279 Identities=20% Similarity=0.255 Sum_probs=237.7
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
+.+..+.+|+..|.++.|.|. .+.++++++.|+.|+||++.. +++++++. |..+|..++|+++|..+++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~---~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPK---KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccc---eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 456788999999999999993 334455699999999999976 78888888 6689999999999999999999999
Q ss_pred EEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621 107 VYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 185 (387)
|++||.++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+ +.+..++.+..|-+.|..+
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi------------Rs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI------------RSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec------------cchHHHHHHHhhhhheeee
Confidence 99999999999999863 5678999999988 89999999999999999 5777889999999999999
Q ss_pred EEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
.|.+.+ ..+++.+.|++++||+.+...++..+. ......++..+|+++++++-+.|+.|.++.+...-+...
T Consensus 349 ~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk---- 422 (503)
T KOG0282|consen 349 TFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK---- 422 (503)
T ss_pred EEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH----
Confidence 999885 999999999999999999888776665 345677899999999999999999999998765322211
Q ss_pred eeEeeccccc--ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce
Q 035621 264 ELVTLANRHD--GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR 332 (387)
Q Consensus 264 ~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 332 (387)
...+.+|. +.-..+.|||||++|++|+.||.+.+||.++-+++..++.| ++++..+.+-+.....+
T Consensus 423 --kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 423 --KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKV 490 (503)
T ss_pred --hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCccee
Confidence 11233554 45678899999999999999999999999999999999988 55788887766655543
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-35 Score=256.33 Aligned_cols=283 Identities=18% Similarity=0.219 Sum_probs=241.9
Q ss_pred eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621 33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAIS 111 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 111 (387)
.+...+..|.+++|+|.. .++.++-..|.|++||.+-+.++..+. |.++|..++|+|++.++++|+.|-.|++|+
T Consensus 4 kfEskSsRvKglsFHP~r----PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKR----PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhhcccccccceecCCCC----CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 345566779999999944 344457789999999999999998887 889999999999999999999999999999
Q ss_pred CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621 112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
..+.+++.++.+|...|+.+.|++.-.+++++|.|.+|+||+. .+..++..+.+|...|+|..|+|..
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw------------qsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW------------QSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec------------cCCceEEEEecCceEEEeeccCCcc
Confidence 9999999999999999999999999999999999999999999 7888999999999999999999985
Q ss_pred CCceEEEEeCCCcEEEEeCCCCc---------------------------EE--EEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621 192 FNSIIISCSMDCTCKFWRLLNGT---------------------------HL--STVT-FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 192 ~~~~l~s~~~d~~i~iwd~~~~~---------------------------~~--~~~~-~~~~v~~~~~~~~~~~l~~~~ 241 (387)
.+++++|-|.+||+||+...+ .+ ..+. |...|+-++|+|.-..+++|+
T Consensus 148 --DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 148 --DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred --ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 899999999999999985211 01 1112 667899999999999999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCce-
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS- 320 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~- 320 (387)
.|..|++|.++..... +. ....+|.+.|.++-|+|...++++.++|++|+|||+..++.+++++..++ .-+
T Consensus 226 DDRqVKlWrmnetKaW------Ev-DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-RFW~ 297 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAW------EV-DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-RFWI 297 (1202)
T ss_pred CcceeeEEEeccccce------ee-hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC-eEEE
Confidence 9999999998763322 22 22458999999999999999999999999999999999999999975433 333
Q ss_pred ------eEEEEecCCCceeeEEEecCC
Q 035621 321 ------EMVIATGIGGSRGCGVVKTGK 341 (387)
Q Consensus 321 ------~~~~~~~~~~~~~~~~~~~~~ 341 (387)
--.|+.|++.+..+.-.+..+
T Consensus 298 laahP~lNLfAAgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 298 LAAHPELNLFAAGHDSGMIVFKLERER 324 (1202)
T ss_pred EEecCCcceeeeecCCceEEEEEcccC
Confidence 337888999988777666443
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.4e-33 Score=236.75 Aligned_cols=269 Identities=23% Similarity=0.397 Sum_probs=229.4
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA 109 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 109 (387)
+.++++|..+|.+++|+|++. .+++++.+|.+++|++.+++....+. +...+..+.|+|+++++++++.+|.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 346778999999999999643 34447889999999998887666555 5567889999999999999999999999
Q ss_pred EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
||+.+++.+..+..|...+.++.|+|+++++++++.|+.+.+||+ ........+..|...+.++.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV------------ETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC------------CCcEEEEEeccCCCcEEEEEEcC
Confidence 999988888888889999999999999888888888999999999 34556677778999999999998
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 268 (387)
++ .++++++.|+.|++||+++++.+..+. +...+.+++|+|+++.+++++.++.+++||+.... ....
T Consensus 146 ~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~ 214 (289)
T cd00200 146 DG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGT 214 (289)
T ss_pred cC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc---------eecc
Confidence 73 788888889999999999888888877 45689999999999999999999999999998622 2222
Q ss_pred cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
...|...+.+++|+|++.++++++.||.|++|++.+++.+..+..+ ...+.++.|.+.
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 272 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPD 272 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCC
Confidence 3367889999999999889998888999999999999999988855 447888888764
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=226.02 Aligned_cols=268 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
..+..|..|..+|.+++.+|+ ..+.+||+.|....+|++.++.....+. |.+.|+++.|+.+|.+||+|+.+|.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred cceeehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 346678999999999999994 4455569999999999999998776665 88999999999999999999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++|+..++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+ ++....+.+.+|+.++++-.|
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i------------p~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI------------PSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC------------CCcceeeEecCCCCCcccccc
Confidence 99999999888888655678889999999999999999999999999 566788899999999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CC------------------------------------------
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PC------------------------------------------ 223 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~------------------------------------------ 223 (387)
.|++ +.++++..||+|++||+.+++++..+.. ..
T Consensus 199 ~pdG--Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 199 IPDG--KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cCCC--ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 9984 9999999999999999999988766541 00
Q ss_pred -----------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 224 -----------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 224 -----------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
.|-++.++..-.+.|+|+-||+|.|||+.... ++.. -.|...|+.+.|-+ ..+|++++
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---------~R~~-c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---------LRHI-CEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---------hhee-ccCCCceEEEEEcC-cchheeec
Confidence 01112222233466778889999999987632 2222 26889999999998 78999999
Q ss_pred CCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
.+|.|+.||.++|+++..+.+|.. .|.++++++
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~ 378 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQM-GILDFALSP 378 (399)
T ss_pred cCceEEeeeccccceEEEEecCch-heeEEEEcC
Confidence 999999999999999999999976 787777765
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=216.30 Aligned_cols=274 Identities=14% Similarity=0.184 Sum_probs=235.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
++|+.+|..|++|+.|+++.+|++........ ..+|.+.|-.++|+|. ....+++++.|.+|++||+..+++...
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~---~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK---HPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC---CCcceEEecCCceEEEEEeccCcEEEE
Confidence 68999999999999999999999987755543 4789999999999984 233555689999999999999999999
Q ss_pred cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
+.....-..+.|+|+|+++++++.|..|.+.|.++.+.....+ ....+.-+.|+.++.+++.....|.|.|...
T Consensus 103 i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy----- 176 (313)
T KOG1407|consen 103 IETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY----- 176 (313)
T ss_pred eeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEec-----
Confidence 9888877889999999999999999999999999888776654 3556788999988888888888899999887
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 238 (387)
+..+++..+++|.....||.|.|++ ++|++|+.|-.+.+||+...-+++.+. +.-+|..+.|+.+|++|+
T Consensus 177 -------psLkpv~si~AH~snCicI~f~p~G--ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 177 -------PSLKPVQSIKAHPSNCICIEFDPDG--RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred -------cccccccccccCCcceEEEEECCCC--ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 7788999999999888888888885 999999999999999999999999987 788999999999999999
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC---------CcEEEEECC
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED---------GSVYIWEIE 303 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~ 303 (387)
+++.|..|-|-+.+++. .+... .+.++...++|+|...+||-++.| |.|++|-+.
T Consensus 248 SaSEDh~IDIA~vetGd--------~~~eI--~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGD--------RVWEI--PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccCccceEEeEecccCC--------eEEEe--eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999988844 44333 578999999999999999977765 456665443
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=234.01 Aligned_cols=268 Identities=18% Similarity=0.232 Sum_probs=222.6
Q ss_pred CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621 38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD 116 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 116 (387)
...|.|+.+..+ .+++|..|++|++||.++..+...+. |.+.|.|+.|. .+.+++|+.|.+|++||+++++
T Consensus 197 skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 445888888764 44558999999999999888887766 77899999985 4699999999999999999999
Q ss_pred eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
++.++-.|...|..+.|+ +.++++++.|.++.+||+... ......+.+.+|...|+.+.|. .+++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp---------s~it~rrVLvGHrAaVNvVdfd----~kyI 333 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP---------TDITLRRVLVGHRAAVNVVDFD----DKYI 333 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc---------hHHHHHHHHhhhhhheeeeccc----cceE
Confidence 999999999999999996 458999999999999999442 2233556678999999999885 3699
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccccc
Q 035621 197 ISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 197 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
++++.|.+|++|++.+++.++++. |...|.|+.+ .++++++|+.|.+|++||+..+. +...+.+|+.-
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~---------cLRvLeGHEeL 402 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEEL 402 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH---------HHHHHhchHHh
Confidence 999999999999999999999987 7788888877 57899999999999999999843 33445689999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCccEE---------EEeecccCCCceeE------EEEecCCCceeeEEEecC
Q 035621 276 VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV---------MVLKNELAGSISEM------VIATGIGGSRGCGVVKTG 340 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~ 340 (387)
|.++.| |.+.+++|+.||+|++||+..+... ..+.. +.|.|..+ .+++..++.+.+|.+..+
T Consensus 403 vRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 403 VRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-HSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh-ccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999999 5678999999999999999887533 23332 45677776 446778888888887766
Q ss_pred CC
Q 035621 341 KA 342 (387)
Q Consensus 341 ~~ 342 (387)
..
T Consensus 480 ~~ 481 (499)
T KOG0281|consen 480 PP 481 (499)
T ss_pred Cc
Confidence 55
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=228.19 Aligned_cols=273 Identities=21% Similarity=0.320 Sum_probs=234.8
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVP 83 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~ 83 (387)
.|....+++|+.|..+.++|..+.+.+..++||...|+.+.++++ ...+++++.|..|++|......... ...|.
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~----~~~v~~aSad~~i~vws~~~~s~~~~~~~h~ 303 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD----LDTVITASADEIIRVWSVPLSSEPTSSRPHE 303 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc----hhheeecCCcceEEeeccccccCcccccccc
Confidence 344578999999999999999999999999999999999999994 3444558999999999987665444 44488
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
++|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+|||.+|.+|..||.+++||+
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl------- 376 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL------- 376 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc-------
Confidence 9999999999999999999999999999999998776653 2345899999999999999999999999999
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC--ceeEEEeCCCCCeEEE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC--AIMGLALDPTETDFFA 239 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~ 239 (387)
.....+..|.+|.++|..++|+.++ .+|+++..|+.|++||++..+...++..+. .+.++.|.+.|.+|+.
T Consensus 377 -----ks~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 377 -----KSQTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred -----CCccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 5666888999999999999999874 999999999999999999999888887543 6999999999999999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
++.+=.|++++-.+.. ......+..|.+..+.+.|....+++++++.|..++++.+
T Consensus 450 ~g~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9888888887755432 2333334568889999999999999999999999988764
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=220.78 Aligned_cols=275 Identities=17% Similarity=0.230 Sum_probs=228.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC-----------------C-ceeEeccCCCCCceeEEEcCccceeeeccccCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS-----------------G-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~-----------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d 63 (387)
-+|||||.++|+|+.|-.|+|.|++. + -.++++-.|..+|+++.|+|...++.+ ++.|
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS----~srD 193 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS----GSRD 193 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe----ccCC
Confidence 36999999999999999999999851 1 246788889999999999996655554 9999
Q ss_pred CeEEEEEccCCCcc---cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCC
Q 035621 64 GSVHLYNLWSSTPL---HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDG 137 (387)
Q Consensus 64 ~~v~vw~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~ 137 (387)
++|+++|+...... +.++...+|.++.|+|.|.+|++|.....+++||+++.++...-. .|.+.|+++.+++.+
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 99999999765433 345566899999999999999999999999999999988765543 689999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
++.++++.||.|++||- -..+++.++. +|. ..|.+..|..+ ++++++.+.|..+++|.+.++++
T Consensus 274 ~lYvTaSkDG~IklwDG------------VS~rCv~t~~~AH~gsevcSa~Ftkn--~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDG------------VSNRCVRTIGNAHGGSEVCSAVFTKN--GKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cEEEEeccCCcEEeecc------------ccHHHHHHHHhhcCCceeeeEEEccC--CeEEeecCCcceeeeeeecCCce
Confidence 99999999999999997 4566666653 454 46788888776 49999999999999999999999
Q ss_pred EEEEecCC------ceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621 216 LSTVTFPC------AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL 288 (387)
Q Consensus 216 ~~~~~~~~------~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 288 (387)
+..+...+ --+...|+....+++.-.. .+.+.-||.++..+. ..+..+|.+.+..+.-||.+.-+
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--------~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--------ALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--------hhcccCCCCCceEEEeCCCCCce
Confidence 99987321 2345667777888777665 688999999985443 22334899999999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 035621 289 VSAAEDGSVYIWEI 302 (387)
Q Consensus 289 ~s~~~dg~i~iwd~ 302 (387)
++|+.|..+++|--
T Consensus 412 mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSDDFRARFWYR 425 (430)
T ss_pred eeecccceeeeeee
Confidence 99999999999964
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-34 Score=216.22 Aligned_cols=277 Identities=14% Similarity=0.219 Sum_probs=221.4
Q ss_pred ccccCC-CcEEEeeC-------CCCcEEEEeCCCCceeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPC-NEVILTSS-------PEGPITAYNPSSGAILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~-~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
+.|||- .++||.+. ..|++.|.++...+-+.++.. -.+.+..++|++. ....+++++.||++++||+
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN---HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC---CcceEEEEecCceEEEecc
Confidence 467873 23444332 468999999875555554432 3556999999984 3345556899999999996
Q ss_pred cCC-CcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 035621 72 WSS-TPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDG 147 (387)
Q Consensus 72 ~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 147 (387)
... .++..++ |..+|.++.|++ ++..+++++.|++|++|+....+-+.++++|..-|...+|+| .++.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 433 4666665 778999999998 566788889999999999999999999999999999999999 678999999999
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCce
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAI 225 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v 225 (387)
.+++||++. .++. ..+..|...|.++.|+... .++++||+.|+.|++||+++.+ ++..+. |.-.|
T Consensus 171 ~l~lwdvr~-----------~gk~-~~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV 237 (311)
T KOG0277|consen 171 TLRLWDVRS-----------PGKF-MSIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV 237 (311)
T ss_pred eEEEEEecC-----------CCce-eEEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEE
Confidence 999999953 2333 3388999999999998764 6899999999999999999754 455555 67789
Q ss_pred eEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 035621 226 MGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 226 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 302 (387)
..+.|+|.. ..|++++.|-++++||...+. ...+....|+.-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999975 678888999999999998632 33333446888999999986 5679999999999999984
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=231.96 Aligned_cols=264 Identities=21% Similarity=0.310 Sum_probs=224.3
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG 115 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 115 (387)
...+|.+++|+|....... ....-.+.+|+..+....+.+. +...++++.|-.||++|++|...|.|++||+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~a----Vt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFA----VTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceE----EecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 3456999999994332221 3456689999998887777554 7889999999999999999999999999998777
Q ss_pred ceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621 116 DILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (387)
..++.+.+|+.++..+.|+|+ +..+++|+.|+.+++||+ .+......+.+|.+.|.+.+++|.. +.
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~------------s~a~v~~~l~~htDYVR~g~~~~~~-~h 167 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL------------STAYVQAELSGHTDYVRCGDISPAN-DH 167 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc------------CCcEEEEEecCCcceeEeeccccCC-Ce
Confidence 788889999999999999995 457788888999999999 3444456889999999999999985 67
Q ss_pred eEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621 195 IIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
+++||+.||.|++||++.. ..+.++.|..+|..+.+-|.|..+++++. ..+++||+..+ .........|.
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G--------~qll~~~~~H~ 238 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG--------GQLLTSMFNHN 238 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC--------ceehhhhhccc
Confidence 9999999999999999987 88889999999999999999999988875 48999999973 33333334599
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 274 GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 274 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
..|+|+++..++..|++|+-|+.|++||+.+.+.+..+.- +++|-+++++++.
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd 291 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDD 291 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCC
Confidence 9999999999999999999999999999999999998874 5789999888844
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.5e-33 Score=221.79 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=219.5
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-----cCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-----IPV 82 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-----~~~ 82 (387)
++.+++|+.||.++|||. .|+....+.+|.++|.+++|..... ....+++++.|.++++|.++.++.... -.|
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 679999999999999996 6999999999999999888864211 112577799999999999987754322 247
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-------------------------CceeEEccCCCCCeEEEEEcCCC
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPK-------------------------GDILRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~ 137 (387)
...|-++...++|..+++|+.|..|.+|+.++ +.++..+.+|..+|.++.|++ .
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C
Confidence 78999999999999999999999999999321 235667889999999999997 6
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc---
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--- 214 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--- 214 (387)
..+++++.|.+|+.||+ .......++. ....+.++.++|.. .+|++|+.|..|++||.+++.
T Consensus 272 ~v~yS~SwDHTIk~WDl------------etg~~~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDL------------ETGGLKSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred CceEeecccceEEEEEe------------ecccceeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCce
Confidence 68999999999999999 4555555544 45678899999875 899999999999999999864
Q ss_pred EEEEE-ecCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 215 HLSTV-TFPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 215 ~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
...++ .|.+-|.++.|+|... +|++++.|+.+++||++. .......+.+|...|.++.|. ++..|++||
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS--------~k~plydI~~h~DKvl~vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS--------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG 407 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc--------CCCcceeeccCCceEEEEecc-CCceEEecc
Confidence 22333 3788999999999765 567788899999999998 333334445899999999997 467999999
Q ss_pred CCCcEEEEECC
Q 035621 293 EDGSVYIWEIE 303 (387)
Q Consensus 293 ~dg~i~iwd~~ 303 (387)
.|.+|+|+.-.
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999998643
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=248.27 Aligned_cols=272 Identities=18% Similarity=0.303 Sum_probs=233.6
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEe-ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAH-FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP 85 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~ 85 (387)
..++++++.+++|++||..++..+.. +.+|.+.|.++++.. ....+++|+.|.++++||..++++...+. |.+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st 293 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS 293 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce
Confidence 56889999999999999999999888 999999999999985 23344558999999999999999999998 7788
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+.++...+ .++++|+.|.+|++|++.++.++..+.+|.++|+++..+ +.++++|+.|++|++||+
T Consensus 294 v~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~----------- 358 (537)
T KOG0274|consen 294 VRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP----------- 358 (537)
T ss_pred EEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh-----------
Confidence 88888755 478889999999999999999999999999999999997 789999999999999999
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDG 244 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 244 (387)
...++++.+.+|...|.++.+... ..+++|+.|++|++||+++. +++..+.++..+. -.+...+++|++++.|+
T Consensus 359 -~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 -RTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADG 433 (537)
T ss_pred -hhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccc
Confidence 678899999999999999977543 68999999999999999999 8998888554433 33444678999999999
Q ss_pred cEEEEeccccccccccccceeEeeccc-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 245 LIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
.|++||...+.. ...+.+ |...|..+++. ...+++++.||++++||++++++.+.+-.+
T Consensus 434 ~Ik~WD~~~~~~---------~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 434 TIKLWDAEEGEC---------LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cEEEeecccCce---------eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 999999988432 222233 66888888886 467888999999999999999999877433
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=240.75 Aligned_cols=277 Identities=19% Similarity=0.245 Sum_probs=237.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+++|.+...+++|+. +.|+||+..+.++++++... -+.+..|-|.. .+++.|...|.+.+||+.+...+.+++
T Consensus 379 l~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 379 LCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGD----RYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred EEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCC----ceEEEeccCCceEEEEeehhhhhhhhh
Confidence 578888888888764 78999999999999999643 68888999943 444559999999999999998888877
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-----CceeE--Ecc-----CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-----GDILR--SFS-----AHDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
|.+.+..++.+||+..+++|+.|.+|++||..- +...+ .+. .-...|.|+.+|||+++|+++--|.+
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 788999999999999999999999999999731 21111 111 23567999999999999999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeE
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMG 227 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~ 227 (387)
+++|-+ .+-+....+.+|.-||.|+..+|++ .+++|||.|..|++|-+.-|.|-+++- |...|.+
T Consensus 532 VkVyfl------------DtlKFflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 532 VKVYFL------------DTLKFFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred EEEEEe------------cceeeeeeecccccceeEEeccCCc--CeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 999988 5666778899999999999999996 999999999999999999999888775 8899999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
+.|-|....+++++.|+.|+-||-.. ......+.+|...|++++.+|+|.++++++.|.+|++|.-....+
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~k---------Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEK---------FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhh---------hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 99999999999999999999999876 233344568999999999999999999999999999999766444
Q ss_pred E
Q 035621 308 V 308 (387)
Q Consensus 308 ~ 308 (387)
+
T Consensus 669 ~ 669 (888)
T KOG0306|consen 669 I 669 (888)
T ss_pred e
Confidence 3
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.3e-32 Score=257.13 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=217.1
Q ss_pred CCcEEEEeCCCCceeEe-----ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC----C----cccccCCC
Q 035621 17 EGPITAYNPSSGAILAH-----FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS----T----PLHNIPVP 83 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~----~----~~~~~~~~ 83 (387)
+|.+++|+..+...... +..|...|.+++|+|++. .+++++.|+.|++|+.... . +...+.+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~ 532 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCcccccccccccceEEeccc
Confidence 67788888876554433 345889999999999654 4555999999999997542 1 12233345
Q ss_pred CCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 84 EPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 84 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
..+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+.|++||+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~------- 605 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI------- 605 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC-------
Confidence 6789999987 478999999999999999999999999999999999999997 7889999999999999999
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~ 239 (387)
.....+..+..+ ..+.++.|.+. ++.+|++|+.|+.|++||+++.+ .+..+. |...|.++.|. ++.++++
T Consensus 606 -----~~~~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 606 -----NQGVSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred -----CCCcEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 344455566544 67889998654 26899999999999999998765 344444 77889999997 6789999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
++.|+.|++||+....... .......+.+|...+..++|+|++.+|++|+.|+.|++|+......+..+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 9999999999997532110 11223345589999999999999999999999999999998877655444
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=236.32 Aligned_cols=295 Identities=15% Similarity=0.235 Sum_probs=247.3
Q ss_pred EEEeeCCCCcEEEEeCCCCcee---------EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 10 VILTSSPEGPITAYNPSSGAIL---------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
.|++ -.++++..|.++..... .++.+|...|++++++.+..+.+ .+..+.+++|+..+.++++++
T Consensus 337 ~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-----Sga~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 337 TLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-----SGAGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred eEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-----ecCCCcEEEEEccCcceeEEe
Confidence 3444 55678988887652111 35678999999999999777666 356789999999999999999
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
... -+.+..|-|.++++++|..+|.+.+||+.+...+.++++|.+.|.+++.+||++.+++|+.|.+|++||..-...
T Consensus 411 ~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~- 488 (888)
T KOG0306|consen 411 TCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS- 488 (888)
T ss_pred ccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-
Confidence 876 788999999999999999999999999999999999999999999999999999999999999999999843322
Q ss_pred CCCCCCCCccceE-----eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC
Q 035621 161 HTDDKNPDDLMLQ-----KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE 234 (387)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 234 (387)
... +...+. ..-.-...|.|+.++|++ .+|+.+=-|.++++|-+.+.+..-++. |.-+|.|+.++||+
T Consensus 489 ~~g----t~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS 562 (888)
T KOG0306|consen 489 VPG----TQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS 562 (888)
T ss_pred cCc----ccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc
Confidence 111 111111 111235678999999985 999999999999999999988776665 88899999999999
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
+.+++|+.|.+|++|-+..++.. ..+.+|...|+++.|.|+..++.++|.|+.|+-||-+.-+.++.+.+|
T Consensus 563 klivTgSADKnVKiWGLdFGDCH---------KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCH---------KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred CeEEeccCCCceEEeccccchhh---------hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc
Confidence 99999999999999999884432 223489999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEecC
Q 035621 315 LAGSISEMVIATGI 328 (387)
Q Consensus 315 ~~~~v~~~~~~~~~ 328 (387)
+. .|.+++.++..
T Consensus 634 ~~-ev~cLav~~~G 646 (888)
T KOG0306|consen 634 HS-EVWCLAVSPNG 646 (888)
T ss_pred hh-eeeeeEEcCCC
Confidence 76 89999887764
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7e-33 Score=221.21 Aligned_cols=273 Identities=16% Similarity=0.191 Sum_probs=220.1
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCC---CEEEEecCCCcEEEEeCC
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADG---SYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~ 113 (387)
|.+.|.++...+ .++++|+.||.+++||...........|.+++..++|.-.. ..+++++.|.++++|..+
T Consensus 104 hdDWVSsv~~~~------~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 104 HDDWVSSVKGAS------KWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred chhhhhhhcccC------ceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 566666666554 35556899999999998544444444588899988875433 359999999999999988
Q ss_pred CCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC-------------CCCCCCCccceEeee
Q 035621 114 KGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH-------------TDDKNPDDLMLQKFV 176 (387)
Q Consensus 114 ~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~ 176 (387)
.++.. ..-++|...|-++...+++..+++|+.|.+|++|+........ .........++..+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 77543 3345999999999999999999999999999999932211100 111123456788899
Q ss_pred ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
+|..+|.++.|++. ..+++++.|.+|+.||+.++....++..+..++++.++|..++|++|+.|..|++||.+.+.
T Consensus 258 GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~- 333 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD- 333 (423)
T ss_pred ccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-
Confidence 99999999999874 79999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCcc-EEEEeecccCCCceeEEEE
Q 035621 257 QQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKRQ-VVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~ 325 (387)
+..+...+.+|.+.|.++.|+|... +|++|+.|+++++||+++-+ ++..+..|.+ .|-++.+.
T Consensus 334 -----gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~ 398 (423)
T KOG0313|consen 334 -----GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN 398 (423)
T ss_pred -----CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc
Confidence 3445555679999999999999765 67899999999999999988 9999998844 66655443
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=216.67 Aligned_cols=253 Identities=21% Similarity=0.305 Sum_probs=219.5
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---------CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---------VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
...-+.|..|+|++.++ ++++.||-|.+||..+|+..+.++ +..+|.|+.|+.|...+++|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyL----vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYL----VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred cccchhheeeCCCCceE----eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 44558899999966554 459999999999999998766554 45789999999999999999999999
Q ss_pred EEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 108 YAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
++|.+++|++++.|. +|...|+|+.|+.|+..+++++.|.++++.-+ ..+++++.+.+|.+.|+...
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl------------KSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL------------KSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc------------ccchhHHHhcCccccccceE
Confidence 999999999999997 89999999999999999999999999999988 78899999999999999999
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccccc
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 262 (387)
|.+++ ..+++++.||+|++|+.++.+++.+|+. ..+|+++..-|.+ ..++++...+++++-++..
T Consensus 356 ft~dG--~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--------- 424 (508)
T KOG0275|consen 356 FTDDG--HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--------- 424 (508)
T ss_pred EcCCC--CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc---------
Confidence 99885 9999999999999999999999999873 4578888887755 6788888899999988874
Q ss_pred ceeEeecc--cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621 263 QELVTLAN--RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316 (387)
Q Consensus 263 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (387)
+.+..+.. ...+...+.+.+|.|.++.+.++|+.++.|.+.+|++.+.+..|..
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 23333322 2345577788999999999999999999999999999999987755
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=221.47 Aligned_cols=279 Identities=18% Similarity=0.225 Sum_probs=226.3
Q ss_pred ccccCCC-cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCN-EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
|+=+|.. ..+++|+.||.|+|||+...++..+++.|.+.|..|++... .+++++.|.+|+.|.++. .+++++
T Consensus 72 lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~------~~~tvgdDKtvK~wk~~~-~p~~ti 144 (433)
T KOG0268|consen 72 LAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT------SFFTVGDDKTVKQWKIDG-PPLHTI 144 (433)
T ss_pred hhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc------ceEEecCCcceeeeeccC-Ccceee
Confidence 3445555 67899999999999999999999999999999999999873 344588999999999865 477777
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
.....+..+.-+..++.++++|. .|.|||..-..++..+.-....|.++.|+|.. ..|+++++|+.|.+||++
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R---- 218 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR---- 218 (433)
T ss_pred eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc----
Confidence 77888888888888888988875 49999998888999888777889999999954 577888899999999994
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeE
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDF 237 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l 237 (387)
...+++.+. ....-+.|+|+|. ...++++++|..++.||++..+ ++..+. |.+.|.++.|+|.|+.+
T Consensus 219 --------~~~Pl~KVi-~~mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 219 --------QASPLKKVI-LTMRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred --------cCCccceee-eeccccceecCcc--ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 344444432 2344567999995 4789999999999999999764 344443 77899999999999999
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
++|+.|.+|+||..+.+....... ...-..|.++.||.|.+++++|+.|+.|++|.....+.+..+.
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYh--------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYH--------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred ccccccceEEEeecCCCcchhhhh--------HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence 999999999999988743222111 1223569999999999999999999999999988777665554
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.7e-30 Score=229.97 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=183.1
Q ss_pred CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEE
Q 035621 81 PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIAT 151 (387)
Q Consensus 81 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 151 (387)
.|.+.|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|+.|++
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 3778999999999 8899999999999999999765 3467788999999999999975 69999999999999
Q ss_pred EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC-ceeEEE
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC-AIMGLA 229 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~v~~~~ 229 (387)
||+ ........+..|...|.+++|+|++ .+|++++.|++|++||+++++.+..+. |.. ....+.
T Consensus 153 WDl------------~tg~~~~~l~~h~~~V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 153 WDV------------ERGKAVEVIKCHSDQITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred EEC------------CCCeEEEEEcCCCCceEEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 999 4556677888999999999999985 899999999999999999999888876 333 345788
Q ss_pred eCCCCCeEEEEc----cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 035621 230 LDPTETDFFAAG----SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEK 304 (387)
Q Consensus 230 ~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 304 (387)
|.+++..+++++ .|+.|++||++.... ........+...+....|++++++|++++ .|+.|++||+.+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-------p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-------PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-------ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 999888887654 478999999986321 11111112334566678899999999887 599999999999
Q ss_pred ccEEEEeecccCCCceeEEEEec
Q 035621 305 RQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 305 ~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
++++.........++.+++|.+-
T Consensus 292 ~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 ERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CceEEEeeccCCCCCcceEeccc
Confidence 99888776555556777766653
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-30 Score=201.68 Aligned_cols=277 Identities=16% Similarity=0.193 Sum_probs=221.1
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecC--CC
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGL--SG 105 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg 105 (387)
++.+.+..-...|+++.|++++..+. +++.|.++++||..++++++.+..+ -.+..++|....+.++.++. |.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~li----tss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLI----TSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEE----EecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence 34455555677899999999655544 4889999999999999999988855 46888888887777777765 78
Q ss_pred cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621 106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 185 (387)
+|+..++.+.+.++-+.+|...|++++.+|-+..+++++.|++|++||++ ...+...+.....+ .+
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR------------~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR------------VKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec------------CCCCceEEecCCCc--ce
Confidence 99999999999999999999999999999988999999999999999994 33444444333333 46
Q ss_pred EEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEec----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 186 TCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTF----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
+|.|.+ -++|++.....|++||++.- .+..++.. ....+.+.|+|||++|+.++..+.+++.|.-.+.....
T Consensus 147 AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 147 AFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 777774 88888888779999999864 45555552 46789999999999999999999999999888653332
Q ss_pred cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 331 (387)
.... .....-....+|+||++++++|+.||+|.+|++++++.+..+.+...++++++.|.|.....
T Consensus 225 fs~~------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 225 FSGY------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMF 290 (311)
T ss_pred Eeec------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeee
Confidence 2111 11111236778999999999999999999999999999999999878899999877765444
No 69
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=210.29 Aligned_cols=275 Identities=19% Similarity=0.246 Sum_probs=232.2
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc------cCC-------
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL------WSS------- 74 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~------~~~------- 74 (387)
...+.+++.|.+.+||.+++|.++.++.+|.+.|++++|++.+.+. ++++.|++..||.. ...
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~----lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLL----LTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceE----EEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 3478899999999999999999999999999999999999965554 45999999999972 110
Q ss_pred -C--------------------------cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC
Q 035621 75 -T--------------------------PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK 126 (387)
Q Consensus 75 -~--------------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 126 (387)
+ ++..+. |...|.+..|...|+.+++++.|.+..+||+++++++..+.+|..
T Consensus 236 sEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ 315 (481)
T KOG0300|consen 236 SEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS 315 (481)
T ss_pred chhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch
Confidence 0 011111 445677888989999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621 127 PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCK 206 (387)
Q Consensus 127 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~ 206 (387)
..+.++-+|..+++++++.|.+.++||++. .-..+..|++|...|++..|..+ ..+++|+.|.+|+
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFRe-----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTvK 381 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTVK 381 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchh-----------hcceeeeecccccceeEEEEecC---CceeecCCCceEE
Confidence 999999999999999999999999999963 34467789999999999999876 6899999999999
Q ss_pred EEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621 207 FWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 207 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
+||+++. .++.++...++++.++.+..+..|+.-..+..|++||++....... +.....+|...|+|++|..+.
T Consensus 382 vWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 382 VWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred EeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----CcccccccceeeeeeeccccC
Confidence 9999975 5788999999999999999999999999999999999986433222 122235899999999998543
Q ss_pred --CEEEEEeCCCcEEEEECCCc
Q 035621 286 --KNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 286 --~~l~s~~~dg~i~iwd~~~~ 305 (387)
.-|++++.|..+.=|++...
T Consensus 457 p~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccccccceeeeeEeccc
Confidence 35889999999999998754
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-30 Score=202.71 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=225.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+.|+++|.+|++++.|.+++|||..+++.+.++..+.-.+..+.|... ..+.+ +.-.|.+|+..++.+++.++.
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~s----Stk~d~tIryLsl~dNkylRY 95 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHS----STKEDDTIRYLSLHDNKYLRY 95 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEc----cCCCCCceEEEEeecCceEEE
Confidence 579999999999999999999999999999999888778888888652 22221 234588999999999999999
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
+. |...|..++.+|-+..+++++.|++|++||++..++...+.. ..-..++|.|+|-++|++.....|++||++..
T Consensus 96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~- 172 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSF- 172 (311)
T ss_pred cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEeccc-
Confidence 98 778999999999999999999999999999998887766653 23346799999999999998889999999764
Q ss_pred ccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----CceeEEEeC
Q 035621 159 DEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP----CAIMGLALD 231 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~ 231 (387)
...+...+. ......+.+.|+|++ ++++.++..+.+++.|.-+|..+.++... .-....+|.
T Consensus 173 ---------dkgPF~tf~i~~~~~~ew~~l~FS~dG--K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 173 ---------DKGPFTTFSITDNDEAEWTDLEFSPDG--KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred ---------CCCCceeEccCCCCccceeeeEEcCCC--CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 223333333 335678899999985 88898999999999999999998888732 123688999
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
||++++++|+.||.|.+|++++ +.+...+...+.+++.++.|+|.-.+++++ +..+-+|=....
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~t--------g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLET--------GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCC--------CcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 9999999999999999999987 445555554578899999999987777776 456888865543
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=221.41 Aligned_cols=274 Identities=16% Similarity=0.253 Sum_probs=226.5
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cccccCC-CCCeeeEEeccCCCEEEEecCCCcE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNIPV-PEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
...+..|.+.+..+.|-+ ....+++++.|..|++|++...+ .+.++.. .++++.+.|.++++++++++.|+.+
T Consensus 168 ~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred hhhhhccccccceeEEcc----CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 445667999999999998 44566779999999999997666 3444443 4679999999999999999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++|++.+.+...++.+|...|+++.|......+++|+.|.+|++||+. ...+.++.. ....+..|..
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~------------k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ------------KAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh------------hhheecccc-ccccccceEe
Confidence 999999999999999999999999998877679999999999999993 334444332 2344556665
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
. ...+++|..|++|++||.++..+....+..+.|+++..++++..+.+++.|.++.++|+++......+.....
T Consensus 311 ~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~-- 384 (459)
T KOG0288|consen 311 S----ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF-- 384 (459)
T ss_pred c----ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc--
Confidence 4 2578999999999999999999999999999999999999999999999999999999998554433322111
Q ss_pred ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC-CceeEEEEecCCC
Q 035621 268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG-SISEMVIATGIGG 330 (387)
Q Consensus 268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 330 (387)
......+.+.|||++.|+++|+.||.|+||++.++++...+...... .|+++.|.+...+
T Consensus 385 ---k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 385 ---KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred ---ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 12334899999999999999999999999999999999999876654 6888888875544
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=221.98 Aligned_cols=270 Identities=17% Similarity=0.178 Sum_probs=225.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+.|-++...|++|+.|..|++|++...+ .+.++.+..++|+++.|.++.. ++++++.|+.+++|++...+...+
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHT 256 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhh
Confidence 4577888899999999999999987655 6788888899999999998433 333378999999999999998888
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
+. |.+.|+++.|......+++|+.|.+|+.||+....+.+++-. ...+..|..+ ...+++|-.|+.|++||+
T Consensus 257 LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~---- 329 (459)
T KOG0288|consen 257 LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDI---- 329 (459)
T ss_pred hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEec----
Confidence 87 778999999998877799999999999999999888777642 3455666665 457899999999999999
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPT 233 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~ 233 (387)
....+......+. .|+++..++++ ..+.+++.|.++.+.|+++.+....+. .....+.+.|+|+
T Consensus 330 --------Rs~~~~~sv~~gg-~vtSl~ls~~g--~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 330 --------RSADKTRSVPLGG-RVTSLDLSMDG--LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred --------cCCceeeEeecCc-ceeeEeeccCC--eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 4566667776665 99999999885 788888999999999999998888876 2456899999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+.|+++|+.||.|+||++.++... ......+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE--------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLE--------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEE--------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999984432 222223333 799999999999999999999999993
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=238.40 Aligned_cols=243 Identities=14% Similarity=0.151 Sum_probs=194.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC------------------------------------------------------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS------------------------------------------------------ 27 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~------------------------------------------------------ 27 (387)
+.||+||+|||+|+.|+.|+||.+..
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998744
Q ss_pred ------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEecc-CCCEEEE
Q 035621 28 ------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA-DGSYLFT 100 (387)
Q Consensus 28 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 100 (387)
.++++.|.||.+.|..+.|+.+.+++. ++.|.+|++|++...+++..|.|++-|+|++|+| |.+|+++
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLS-----SSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKNNFLLS-----SSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred ccccccccchhhhhccchhheecccccCCeeEe-----ccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEee
Confidence 013346678999999999998765554 7999999999999999999999999999999999 7899999
Q ss_pred ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621 101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180 (387)
Q Consensus 101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (387)
|+-||.|+||++...+.+.-. .-..-|++++|.|||+..++|+.+|.+++|+...+........... ..+. ..|.
T Consensus 428 GSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~--~~Kk-~~~~- 502 (712)
T KOG0283|consen 428 GSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH--NKKK-KQGK- 502 (712)
T ss_pred cccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec--cCcc-ccCc-
Confidence 999999999999877765444 3457899999999999999999999999999854321100000000 0000 1123
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 255 (387)
.|+.+.|.|... ..++..+.|..|||||.++..++..|+. ...-....|+.||++|++++.|..||+|+.....
T Consensus 503 rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 503 RITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 899999998763 4566778899999999988888887772 2345677899999999999999999999986533
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-31 Score=230.63 Aligned_cols=294 Identities=18% Similarity=0.250 Sum_probs=237.1
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV 86 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v 86 (387)
=+.++.|+.+|.+.+||+.+++.+.+++++...|+++.-+| ....++.|..+|+|.++|+..++.+..+++. ++|
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~V 247 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRV 247 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEEccccce
Confidence 36788999999999999999999999999999999999999 5555666999999999999999999999997 999
Q ss_pred eeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEc--------------------------------------------
Q 035621 87 APLATTADGSY-LFTGGLSGNVYAISVPKGDILRSF-------------------------------------------- 121 (387)
Q Consensus 87 ~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------- 121 (387)
+.++|..||+. +++|+..|.+.+||++..+.+..+
T Consensus 248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence 99999999875 566667799999999654321111
Q ss_pred ---cCCCCCeE---------------------------------------------------------------------
Q 035621 122 ---SAHDKPVS--------------------------------------------------------------------- 129 (387)
Q Consensus 122 ---~~~~~~v~--------------------------------------------------------------------- 129 (387)
.+|..+..
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 12333333
Q ss_pred ---------------------------------------------EEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621 130 ---------------------------------------------CLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 130 ---------------------------------------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 164 (387)
+++.++.|++.+.|+..|.|-+|++
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm---------- 477 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM---------- 477 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc----------
Confidence 3333444444444444444444444
Q ss_pred CCCCccceEee---eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 165 KNPDDLMLQKF---VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 165 ~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
+.+.....+ +.|.++|+.++.... ++.+++++.+|.+++||..+...+..+.....+.++.++.....++.+.
T Consensus 478 --QSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 478 --QSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred --ccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 334444445 589999999988655 5899999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE 321 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 321 (387)
.|-.|.++|..+ ..+.+.+.+|.+.|++++|||||++|++++.|++|++||+.++.++-.+.-. .+.++
T Consensus 554 ddf~I~vvD~~t---------~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--~~~~s 622 (910)
T KOG1539|consen 554 DDFSIRVVDVVT---------RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--SPCTS 622 (910)
T ss_pred CceeEEEEEchh---------hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--Cccee
Confidence 999999999987 3455556789999999999999999999999999999999999999888643 46777
Q ss_pred EEEEecCCC
Q 035621 322 MVIATGIGG 330 (387)
Q Consensus 322 ~~~~~~~~~ 330 (387)
+.|+|..+-
T Consensus 623 ls~SPngD~ 631 (910)
T KOG1539|consen 623 LSFSPNGDF 631 (910)
T ss_pred eEECCCCCE
Confidence 877776543
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=214.77 Aligned_cols=268 Identities=14% Similarity=0.167 Sum_probs=218.8
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---cccc-CCCCCeeeEEeccCCCEEEEecCCC
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNI-PVPEPVAPLATTADGSYLFTGGLSG 105 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 105 (387)
..+.+..|...|+-+.|++++.+++ +++.|.+..+|.+..... .+++ .|..+|..+.|+||.++|++++.+.
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLA----saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLA----SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEe----eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 3456778999999999999665555 499999999999865443 2222 3778999999999999999999999
Q ss_pred cEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeE
Q 035621 106 NVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVT 183 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 183 (387)
.+.+||..+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||+. +.....+.+-. ..|.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-------------gn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-------------GNILGNWEGVRDPKVH 358 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-------------cchhhcccccccceeE
Confidence 99999999999888775 345789999999999999999999999999993 33333333332 4688
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
++++.+++ .++++...|..|++|+..+......+..+.+|++++++.+++++++.-.+..+++||+........
T Consensus 359 dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k---- 432 (519)
T KOG0293|consen 359 DLAITYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK---- 432 (519)
T ss_pred EEEEcCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH----
Confidence 99998885 888888899999999999888777788889999999999999999999999999999986332222
Q ss_pred eeEeecccccc--cEEEEEEe-cCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 264 ELVTLANRHDG--VVVSVMMM-NEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 264 ~~~~~~~~~~~--~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
+.+|.. .+..-||- .+..++++|++|+.|+||+..+++++..+.+|. ..|+++.+.|
T Consensus 433 -----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-~~vNcVswNP 492 (519)
T KOG0293|consen 433 -----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCVSWNP 492 (519)
T ss_pred -----hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-ceeeEEecCC
Confidence 234543 34455665 355799999999999999999999999999995 4888876554
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=203.37 Aligned_cols=262 Identities=14% Similarity=0.199 Sum_probs=204.3
Q ss_pred ceeEEEcC---ccceee-eccccCCCCCeEEEEEccCCCccc---ccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeC
Q 035621 41 RRGLTFAG---KPFIAA-SHISPTTGSGSVHLYNLWSSTPLH---NIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISV 112 (387)
Q Consensus 41 v~~~~~~~---~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~ 112 (387)
-.++.|+| +....+ ....--...|++.|.++..++-+. .+...+.+..++|+++ .+.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 35788887 111111 111222457899999997554443 4446788999999995 467888899999999997
Q ss_pred CC-CceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621 113 PK-GDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG 190 (387)
Q Consensus 113 ~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (387)
.. ..++..++.|...|.++.|++ +.+.+++++.|++|++|+. ..+..+.++.+|..-|....|+|.
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~------------~r~~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP------------NRPNSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC------------CCCcceEeecCCccEEEEEecCCC
Confidence 43 367889999999999999998 5567888899999999998 566778889999999999999998
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621 191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268 (387)
Q Consensus 191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 268 (387)
. +++++++|.|+++++||++.......+. |...+.++.|+. +.+.+++|+.|+.|+.||++.. ..+...
T Consensus 159 ~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~--------r~pl~e 229 (311)
T KOG0277|consen 159 I-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL--------RTPLFE 229 (311)
T ss_pred C-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc--------ccccee
Confidence 6 7899999999999999998754444466 667999999997 4567888999999999999983 334444
Q ss_pred cccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCcc-EEEEeecccCCCceeEEE
Q 035621 269 ANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQ-VVMVLKNELAGSISEMVI 324 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~ 324 (387)
+.+|.-.|..++|||.. ..|++++.|-+++|||...+. ++.+...|.+ -+-++.+
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dw 286 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE-FVCGLDW 286 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce-EEecccc
Confidence 57999999999999964 588999999999999998554 4445554433 4444433
No 77
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.6e-30 Score=227.17 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=194.9
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCcee-------------EeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEE
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAIL-------------AHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHL 68 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~v 68 (387)
..++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| +.. .+++++.|++|++
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~----~LaSgS~DgtIkI 102 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ----KLFTASEDGTIMG 102 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC----EEEEEeCCCEEEE
Confidence 45677666777777777777775433221 23678999999999999 443 3455999999999
Q ss_pred EEccCCC-------cccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 69 YNLWSST-------PLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 69 w~~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
||+.++. ++..+. |...|.+++|+|++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 9997653 233333 67889999999975 69999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEEEe----CCCcEEEEeCCCCc
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIISCS----MDCTCKFWRLLNGT 214 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~ 214 (387)
|++++.|+.|++||+ .....+..+.+|.+.. ..+.|.++. ..+++++ .|+.|++||+++..
T Consensus 183 Latgs~Dg~IrIwD~------------rsg~~v~tl~~H~~~~~~~~~w~~~~--~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 183 LCTTSKDKKLNIIDP------------RDGTIVSSVEAHASAKSQRCLWAKRK--DLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEEecCCCEEEEEEC------------CCCcEEEEEecCCCCcceEEEEcCCC--CeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999999999999 4555677788887653 456677664 5565544 47899999998764
Q ss_pred -EEEEEe--cCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 215 -HLSTVT--FPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 215 -~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
++.... ....+....|+++++++++++. |+.|++||+..+. ........+..++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--------~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--------LTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--------eEEEeeccCCCCCcceEeccc
Confidence 333333 3345667789999999999874 9999999998743 222222235567788888885
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.9e-31 Score=215.25 Aligned_cols=278 Identities=17% Similarity=0.218 Sum_probs=223.8
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----c-------------c--CCCCCeeeEEe
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----N-------------I--PVPEPVAPLAT 91 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----~-------------~--~~~~~v~~~~~ 91 (387)
...+..|.-++.+++++| .+.+.++++.+++|.-|++.+++... . - .|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 556678999999999999 44555669999999999998876331 1 0 23456899999
Q ss_pred ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621 92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
++||+||++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....+++++.|+++++|++ .....
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~------------~~~s~ 278 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI------------DQLSY 278 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEeh------------hHhHH
Confidence 999999999999999999999999999999999999999999988889999999999999999 55667
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
+.++.+|++.|..|....-. +.+..|+.|+++++|++.....+....+...+-|++|-.+ ..+++|+.+|.|.+|++
T Consensus 279 vetlyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 78899999999999876553 6666677999999999976655555557778999999754 68999999999999999
Q ss_pred cccccccccccce-eEeec--ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc----cEEEEeecccCCCceeEEE
Q 035621 252 KYQSRQQMHKGQE-LVTLA--NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR----QVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~ 324 (387)
............. +.... ..+..+|++++..|...++++|+.+|.|++|.+..+ .++..++ ..|.|+.++|
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f 433 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAF 433 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEE
Confidence 8754433221110 10000 123358999999999999999999999999999988 4444554 6789999998
Q ss_pred EecCC
Q 035621 325 ATGIG 329 (387)
Q Consensus 325 ~~~~~ 329 (387)
+.+..
T Consensus 434 ~~sgk 438 (479)
T KOG0299|consen 434 SNSGK 438 (479)
T ss_pred ccCCC
Confidence 87665
No 79
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.8e-29 Score=224.32 Aligned_cols=248 Identities=12% Similarity=0.089 Sum_probs=186.4
Q ss_pred cCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc--------eeEEccCCCCCe
Q 035621 59 PTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD--------ILRSFSAHDKPV 128 (387)
Q Consensus 59 ~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v 128 (387)
.|+.++.+++|+......+..+. |...|.+++|+|+ +++|++|+.||.|++||+.++. ++..+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 47788999999987766665555 6789999999996 7899999999999999997642 344677899999
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621 129 SCLKISPDGSL-LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF 207 (387)
Q Consensus 129 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i 207 (387)
.+++|+|++.. +++++.|+.|++||++ .......+. |...|.+++|+|++ .+|++++.|+.|++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~------------tg~~~~~i~-~~~~V~SlswspdG--~lLat~s~D~~IrI 193 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIE------------NEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTCVGKHMHI 193 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECC------------CCcEEEEEe-cCCcEEEEEECCCC--CEEEEEecCCEEEE
Confidence 99999998875 5789999999999993 344444444 56789999999885 89999999999999
Q ss_pred EeCCCCcEEEEEe-cCCcee-----EEEeCCCCCeEEEEccCC----cEEEEeccccccccccccceeEe-ecccccccE
Q 035621 208 WRLLNGTHLSTVT-FPCAIM-----GLALDPTETDFFAAGSDG----LIYKGLLKYQSRQQMHKGQELVT-LANRHDGVV 276 (387)
Q Consensus 208 wd~~~~~~~~~~~-~~~~v~-----~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v 276 (387)
||+++++.+..+. |...+. ...|++++.+|++++.++ .|++||++... ..+.. ....+.+.+
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-------~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-------SALVTMSIDNASAPL 266 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-------CceEEEEecCCccce
Confidence 9999999988887 444332 234568999999987764 79999998622 11111 112233444
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
......++|.++++|+.|+.|++|++..+.+...-......+..+++|.+..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 4444455688999999999999999988754332223344567778777644
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-30 Score=200.78 Aligned_cols=281 Identities=18% Similarity=0.270 Sum_probs=220.6
Q ss_pred EEEeeCCCCcEEEEeCCCC------------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 10 VILTSSPEGPITAYNPSSG------------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
.|++|+....|.=+++.-. .++..+..|.+++++++.+. .++++|+.|-+|+|||+.+...+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~ql 76 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQL 76 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchhhh
Confidence 4677888777766665311 12556688999999999986 35566999999999999988777
Q ss_pred cccC-CCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 78 HNIP-VPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
..+- |.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence 6655 778999999999764 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
-+ ++.-.... -...-+.+.|+|.+ .+++.++.+ .|-+|.+.+.+....+..+..+.++.|- ++
T Consensus 157 V~------------Gr~a~v~~-L~~~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~ 219 (362)
T KOG0294|consen 157 VR------------GRVAFVLN-LKNKATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG 219 (362)
T ss_pred hc------------Cccceeec-cCCcceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence 33 22222221 11223348888875 777776654 5899999998888888877778887776 56
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE--ecCCCEEEEEeCCCcEEEEECCCc-----cE
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM--MNEGKNLVSAAEDGSVYIWEIEKR-----QV 307 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~-----~~ 307 (387)
..|++|+.|+.|.+||... ..+...+.+|..+|.++.+ .|++.+|+|++.||.|+|||++.. ++
T Consensus 220 ~~L~vG~d~~~i~~~D~ds---------~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~ 290 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDS---------DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL 290 (362)
T ss_pred ceEEEecCCceEEEeccCC---------CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence 7899999999999999886 2333344589999999985 467889999999999999999887 45
Q ss_pred EEEeecccCCCceeEEE
Q 035621 308 VMVLKNELAGSISEMVI 324 (387)
Q Consensus 308 ~~~~~~~~~~~v~~~~~ 324 (387)
+..+.. ...++|+..
T Consensus 291 l~e~n~--~~RltCl~~ 305 (362)
T KOG0294|consen 291 LAELNT--NVRLTCLRV 305 (362)
T ss_pred eEEeec--CCccceeee
Confidence 555543 335666543
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-30 Score=228.21 Aligned_cols=249 Identities=20% Similarity=0.335 Sum_probs=196.7
Q ss_pred eeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--------------------------------C--
Q 035621 30 ILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--------------------------------S-- 74 (387)
Q Consensus 30 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--------------------------------~-- 74 (387)
..+.++ .|.+.|+++.|++++.++|+ |+.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAs----aGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLAS----AGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeee----cCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 445666 89999999999997666655 99999999998855 0
Q ss_pred --------------------------CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC
Q 035621 75 --------------------------TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127 (387)
Q Consensus 75 --------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 127 (387)
+++..+. |...|..+.|+.+ ++|++++.|.+|++|++...++++.|. |...
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 0000111 4456788899876 489999999999999999999999995 9999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621 128 VSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCK 206 (387)
Q Consensus 128 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~ 206 (387)
|+|++|+| |.+++++|+-||.++||++ ....+..+..-..-|++++|.|++ +..+.|+.+|.++
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI-------------~d~~Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~ 476 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSI-------------SDKKVVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCR 476 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeec-------------CcCeeEeehhhhhhheeEEeccCC--ceEEEEEeccEEE
Confidence 99999999 8899999999999999999 233444444555899999999995 9999999999999
Q ss_pred EEeCCCCcEEEEEe---c------CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 207 FWRLLNGTHLSTVT---F------PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 207 iwd~~~~~~~~~~~---~------~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
+|+....+....+. + ...|+.+.|.|... .+++.++|..|+|+|.+.......+++. .....-
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------~n~~SQ 549 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------RNTSSQ 549 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-------ccCCcc
Confidence 99999887765553 1 23799999998654 5999999999999999764433332221 112234
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
....|+.||++|+++++|..|++|+.....
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 677899999999999999999999985443
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=213.38 Aligned_cols=273 Identities=19% Similarity=0.235 Sum_probs=221.1
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|||... -+|+.+. -.+.||+..+......+......+.++.|-.++.+++. |...|.|+++|..+...++.+
T Consensus 32 l~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 32 LCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred EecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEc----cCCcCcEEEeccccHHHHHHH
Confidence 67888653 3444443 47999999988888888888888999999997766655 999999999997665566666
Q ss_pred C-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcc
Q 035621 81 P-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 81 ~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 157 (387)
. |..++....|+|+ +..+++|+.|+.+++||+.+......+.+|+..|+|.+|+|. +.++++|+.||.|++||++..
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 5 7889999999995 456778888899999999998876688999999999999994 558999999999999999531
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCC
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTET 235 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~ 235 (387)
...+.+ ..|..+|..+.+.|.+ ..+++++. ..+++||+-+|. .+.... |...|+|+++..++.
T Consensus 187 -----------~~~v~e-lnhg~pVe~vl~lpsg--s~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 187 -----------TSRVVE-LNHGCPVESVLALPSG--SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred -----------CceeEE-ecCCCceeeEEEcCCC--CEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 133344 4689999999999885 88888874 579999999654 444444 889999999999999
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.|++++-|+.+++||+.+. +....+ .-.++|.+++.+|+++.++.|..||.+.+=+...
T Consensus 252 rLlS~sLD~~VKVfd~t~~--------Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNY--------KVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eEeecccccceEEEEccce--------EEEEee--ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999999999997652 222222 4678999999999999999999999887764433
No 83
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=1.8e-29 Score=224.41 Aligned_cols=248 Identities=14% Similarity=0.131 Sum_probs=189.6
Q ss_pred eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--------cccc-CCCC
Q 035621 14 SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--------LHNI-PVPE 84 (387)
Q Consensus 14 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--------~~~~-~~~~ 84 (387)
|+.++.|++|+......+..+.+|.++|.+++|+|.. ...+++++.|+.|++||+.++.. +..+ .|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 5677889999988777888999999999999999941 23455699999999999976432 1222 3678
Q ss_pred CeeeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 85 PVAPLATTADGSY-LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 85 ~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
.|.+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~--------- 196 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP--------- 196 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEEC---------
Confidence 8999999998875 5688999999999999998877775 5678999999999999999999999999999
Q ss_pred CCCCCccceEeeeccCCCeEEEEEee---CCCCceEEEEeCCC----cEEEEeCCC-CcEEEEEecCCc---eeEEEeCC
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCI---GSFNSIIISCSMDC----TCKFWRLLN-GTHLSTVTFPCA---IMGLALDP 232 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~~~~---v~~~~~~~ 232 (387)
.....+..+.+|.+.+....+.. .+++.++++++.|+ +|++||+++ .+++..+.+... +......+
T Consensus 197 ---Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 197 ---RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred ---CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 45667778889988765444322 12347888887764 799999995 566666654432 23333455
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
++.++++|+.|+.|++|++..+.. ..+.. ..+..++.+++|.|..
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~------~~l~~--~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSI------RKVNE--YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcE------Eeecc--cccCCCccceEEcccc
Confidence 688899999999999999976421 11111 1366788899999964
No 84
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=212.52 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=223.4
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA 109 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 109 (387)
+..+.+|.+.|.+++-+|+. .+.+++|+.||.|++||+...++...++ |.+.|..+++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 45678999999999999963 3567789999999999999999999888 667999999988 56888889999999
Q ss_pred EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
|-+.. .+.+++.+ ...+..+.-+..+..+++++. .|.|||. ....++..+.-....|.++.|+|
T Consensus 134 wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~------------~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 134 WKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDE------------QRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeccC-Ccceeeec-cccccccccccccccccccCc--eeeeccc------------ccCCccceeecCCCceeEEecCC
Confidence 99854 46666653 456777777777788898886 4889999 56678888888888999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
.. ..+|++|+.|+.|.+||++++++++.+......+.++|+|.+-.+.+|+.|.+++.||++. ........
T Consensus 198 vE-TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~--------l~~p~~v~ 268 (433)
T KOG0268|consen 198 VE-TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRN--------LSRPLNVH 268 (433)
T ss_pred Cc-chheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhh--------hcccchhh
Confidence 86 5789999999999999999999999999999999999999777888899999999999998 45556666
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
.+|.+.|.++.|||.|+-|++|+.|.+|+||.+..+.-...+.......|.++.++
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS 324 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence 78999999999999999999999999999999998866555544444456666444
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=223.28 Aligned_cols=307 Identities=15% Similarity=0.201 Sum_probs=244.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee---EeccCCCCCceeEEEcCc-------cceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL---AHFSGSRSPRRGLTFAGK-------PFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
+.|+|....|..-..|..++|||+.+-..+ ..+--|...|+.+..-|- ..+....+.+++.|++|++|++
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 468888888888889999999999764332 333458888888876551 1223345778999999999998
Q ss_pred cCCCc--c-----------c-------------------------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621 72 WSSTP--L-----------H-------------------------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 72 ~~~~~--~-----------~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 113 (387)
..+.- + . .+.....+.+++.+|+|++||+|..-|++++|++.
T Consensus 410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence 65210 0 0 00012358899999999999999999999999999
Q ss_pred CCceeEEccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621 114 KGDILRSFSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG 190 (387)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (387)
+.+....+.+|...|.|+.|+. ..++|++++.|+.|.+||.. .+..+++++.+|...|+++.|.-.
T Consensus 490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-----------rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-----------RNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc-----------cccchhhhhcccccceeEEEEeec
Confidence 9999999999999999999986 34689999999999999995 355677889999999999999887
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621 191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE 264 (387)
Q Consensus 191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 264 (387)
+-+..+++++.|..|.+--.+....-..+. .+..+..++..|..+++++++.|..|+||++..+.....+++
T Consensus 559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-- 636 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-- 636 (1080)
T ss_pred CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc--
Confidence 766889999999987654333221112221 246789999999999999999999999999998654443333
Q ss_pred eEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 265 LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 265 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
..+|.+....+...|.|.||++.+.|.++.++|+.+|+++.++.+|.+ .|+++-|.+
T Consensus 637 ----s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~n 693 (1080)
T KOG1408|consen 637 ----SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLN 693 (1080)
T ss_pred ----cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecc
Confidence 236778899999999999999999999999999999999999999966 999996654
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.8e-29 Score=192.14 Aligned_cols=266 Identities=14% Similarity=0.152 Sum_probs=215.8
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEecc-CCCEEEEecCCCcE
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTA-DGSYLFTGGLSGNV 107 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i 107 (387)
+.+++|...+.+++|+.+ +..+++++.|+++.+|+++..+...... |.+.|-.++|+| ....+++++.|.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEccc----CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 567789999999999984 4556669999999999998775544433 667888899988 56789999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++||.+.++++..+....+. .-+.|+|+|.+++.++.|..|.+.|.++ .+.... ......+.-++|
T Consensus 90 r~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~------------~~~~~~-~~~~~e~ne~~w 155 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDART------------YKIVNE-EQFKFEVNEISW 155 (313)
T ss_pred EEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecc------------cceeeh-hcccceeeeeee
Confidence 99999999999888754444 4578999999999999999999999943 222222 223445667888
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV 266 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 266 (387)
+.+ +++++.....|.|.|......+++..++ |+....|+.|+|+|+++++|+.|-.+.+||+.. -...
T Consensus 156 ~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---------LiC~ 224 (313)
T KOG1407|consen 156 NNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---------LICE 224 (313)
T ss_pred cCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---------hhhh
Confidence 744 3666666667999999999999999998 889999999999999999999999999999986 2233
Q ss_pred eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
+.+..+.=+|..+.|+.||++||+|++|..|-|=++++|..+..++. .++...+++-|..
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCC
Confidence 33446788999999999999999999999999999999999999874 3456666665433
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-31 Score=223.94 Aligned_cols=273 Identities=18% Similarity=0.329 Sum_probs=225.6
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCc------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Ccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGA------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPL 77 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~ 77 (387)
|.+++|.+|+.||.|++|+..... .+..++.|...|+.++...++. .+++++.|-+|++|+...+ -+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecccCcchhH
Confidence 467789999999999999985332 3667889999999999887443 4455899999999999877 455
Q ss_pred cccC-CCCCeeeEEe-ccCCCEEEEecCCCcEEEEeCCCC--ceeE--------Ecc-CCCCCeEEEEEcCCCCEEEEEe
Q 035621 78 HNIP-VPEPVAPLAT-TADGSYLFTGGLSGNVYAISVPKG--DILR--------SFS-AHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~--~~~~--------~~~-~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
.++. |.+-|.|+++ .++...+|+|+-|+.|.+||++++ +.+. .+. ++..+|.+++.++.|..+++|+
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg 190 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG 190 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC
Confidence 5555 7789999999 778889999999999999999877 2222 223 7888999999999999999999
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC 223 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 223 (387)
..+.+++||. .....+..+.+|...|..+..++++ ..+++++.||+|++||+...+++.++. |..
T Consensus 191 tek~lr~wDp------------rt~~kimkLrGHTdNVr~ll~~dDG--t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 191 TEKDLRLWDP------------RTCKKIMKLRGHTDNVRVLLVNDDG--TRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred cccceEEecc------------ccccceeeeeccccceEEEEEcCCC--CeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 9999999999 5777888889999999999998885 999999999999999999999999988 777
Q ss_pred ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.+.++..+|+-..+++|+.||.|+.=|+++... .. .......+|..+..+...+-+-+++.|+.|+-|...
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--------~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--------ST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchh--------he-EeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 899999999999999999999999999987421 11 112345567777776555555777889999999765
Q ss_pred Cc
Q 035621 304 KR 305 (387)
Q Consensus 304 ~~ 305 (387)
-.
T Consensus 328 ~~ 329 (735)
T KOG0308|consen 328 PD 329 (735)
T ss_pred cc
Confidence 43
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.8e-30 Score=198.07 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=204.5
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCC-Ccee-EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSS-GAIL-AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
|+||| ...+++.|+.||+|++|+++. |... +....|.++|.+++|+.++ +.+++++.|+.+++||+.+++...
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg----skVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG----SKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC----ceEEeeccCCceEEEEccCCCeee
Confidence 78999 566777999999999999986 3433 3446799999999999954 555569999999999999998877
Q ss_pred ccCCCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 79 NIPVPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.-.|..+|.++.|-+... .|++|+.|.+|+.||++...++.++.- .+.+.++.. ...+++++..++.|.+|++++
T Consensus 109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 778999999999988665 899999999999999999998888763 456776655 345788999999999999954
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe-cC---------Cc
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT-FP---------CA 224 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~---------~~ 224 (387)
.... .......-.-.++++++.++. ...+.|+.+|.+.|..+..+. .-..|+ |. ..
T Consensus 186 ~~te----------~k~~~SpLk~Q~R~va~f~d~--~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 186 PPTE----------FKRIESPLKWQTRCVACFQDK--DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred Ccch----------hhhhcCcccceeeEEEEEecC--CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 2111 111111223457899998886 455889999999999998763 333343 22 15
Q ss_pred eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
|++++|+|.-..|++++.||.+.+||-.... .+. ....|..+|++.+|+.+|.++|-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~--------kLk-~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDART--------KLK-TSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhh--------hhh-ccCcCCCccceeEecCCCCEEEEE
Confidence 7899999999999999999999999987622 222 223689999999999999988854
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.2e-31 Score=198.60 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=236.3
Q ss_pred EeccCCCCCceeEEEcC---ccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 32 AHFSGSRSPRRGLTFAG---KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
.+-.+|..||..++|+| ++.+ +++++.|+.-.+-+-++|..+.++. |.+.|...++..+....++++.|=+-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~f----lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYF----LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceE----EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 34578999999999996 4444 4458999999999989999999888 77899999999988888999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++||.-+|..++.+. |+.-|.+++|+.|.++|++|+.+..+++||+.+ ...+...+.+|.+.|..+.|
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~-----------p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR-----------PKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC-----------CCCCchhhcCCCCcceeEEE
Confidence 999999999999985 889999999999999999999999999999953 34466788899999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
+... +.+++++.|++||+||.+++..++++..+.+|+++.++++|++|.++ ..+.|.+||..+.. .+..
T Consensus 152 c~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~--------~lKs 220 (334)
T KOG0278|consen 152 CHED--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG--------LLKS 220 (334)
T ss_pred eccC--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccc--------ceee
Confidence 9874 78888899999999999999999999999999999999999877665 45689999998732 2222
Q ss_pred ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC--------CCceeeEEEec
Q 035621 268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI--------GGSRGCGVVKT 339 (387)
Q Consensus 268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~ 339 (387)
. .-...|.+...+|+...+++|++|+.++.||..+++.+..+...+.++|.++.|+|+. ++...+|....
T Consensus 221 ~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 221 Y--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred c--cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 1 2345688999999999999999999999999999999998744446799999887643 23346666555
Q ss_pred CCC
Q 035621 340 GKA 342 (387)
Q Consensus 340 ~~~ 342 (387)
++.
T Consensus 299 ~~~ 301 (334)
T KOG0278|consen 299 GKT 301 (334)
T ss_pred CCc
Confidence 554
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=5.8e-28 Score=206.47 Aligned_cols=286 Identities=13% Similarity=0.184 Sum_probs=215.0
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA 87 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~ 87 (387)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++... +++++.++.|++||..+++....+.....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLL---YVCASDSDTIQVIDLATGEVIGTLPSGPDPE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEE---EEEECCCCeEEEEECCCCcEEEeccCCCCcc
Confidence 46789999999999999999998888876544 6789999965432 1236788999999999988777666555567
Q ss_pred eEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCcccccCCCCC
Q 035621 88 PLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG-VIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 88 ~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 165 (387)
.++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+..||..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~---------- 145 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK---------- 145 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCC----------
Confidence 88999999977655 4688999999998887777653 34568899999999999988775 46677872
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCcEEEEEecC--------CceeEEEeCCCCCe
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGTHLSTVTFP--------CAIMGLALDPTETD 236 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~ 236 (387)
......... .......++|++++ +++ +++..++.|++||+.+++.+..+... .....++|+|++++
T Consensus 146 --~~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 146 --TYEIVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred --CCeEEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 232333222 22345678888875 655 45556999999999999887766521 12456889999998
Q ss_pred EEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCccEEEEeecc
Q 035621 237 FFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-AEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 237 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
++++ +.++.+.+||..+.. ..... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++++..++..
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~--------~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYE--------VLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEEcCCCCeEEEEECCCCc--------EEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 6664 456789999987632 11111 234578999999999999876 56899999999999999999753
Q ss_pred cCCCceeEEEE
Q 035621 315 LAGSISEMVIA 325 (387)
Q Consensus 315 ~~~~v~~~~~~ 325 (387)
+.+++++|.
T Consensus 291 --~~~~~~~~~ 299 (300)
T TIGR03866 291 --RLPWGVVVR 299 (300)
T ss_pred --cccceeEeC
Confidence 567887764
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.4e-29 Score=196.02 Aligned_cols=262 Identities=16% Similarity=0.221 Sum_probs=208.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|+|.+..|++++.||++++||+........++ |..++.+++|.++. .+++|+.||.|+.+|+++++....-.
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-----TIVTGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-----eEEEeccCceEEEEEecCCcceeecc
Confidence 5688999999999999999999998886666665 99999999999843 34458999999999999999888888
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
|.+++.|+.+++....+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.|..+.+||++++....
T Consensus 93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 999999999999888999999999999999987655555543 347888877 46789999999999999997653321
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC----cEEEEEe-cC---------CceeE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG----THLSTVT-FP---------CAIMG 227 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-~~---------~~v~~ 227 (387)
...-..-.-.+.++++.|+. .=++.++.||.|.+=.+... +....|+ |. -+|++
T Consensus 170 ----------q~reS~lkyqtR~v~~~pn~--eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 170 ----------QRRESSLKYQTRCVALVPNG--EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred ----------hhccccceeEEEEEEEecCC--CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 11122234567899999964 66788899999988666654 2333343 21 37999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
++|+|-...+++|+.||.|.+||+.+.. .+..+. .....|.+++|+.+|..||.++.
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rK--------rl~q~~-~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRK--------RLKQLA-KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchh--------hhhhcc-CCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999998733 333332 34667999999999999999864
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=214.37 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=206.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
|++.|.|.+|++|+.|..|++||++.. +..+.+ ......|++++|++ ....++..+.....+|+|-...+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~----Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV----TGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC----CCCeEEEEecCcceeEEccCCcee
Confidence 578899999999999999999998633 222233 23445699999999 333444466778889998654333
Q ss_pred ccccC-------------CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCc-eeEEcc-----CCCCCeEEEEEcCC
Q 035621 77 LHNIP-------------VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGD-ILRSFS-----AHDKPVSCLKISPD 136 (387)
Q Consensus 77 ~~~~~-------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~-----~~~~~v~~~~~~~~ 136 (387)
....+ |-..++|.+|+|.. ..+++++.||++++||+...+ ....++ +..-+++.++|+|+
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 32222 45678999999964 578899999999999997653 222332 33457899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
++++++|+.||+|.+|+.+.. ........-.+|.. .|++|.|++++ ++|++-+.|+++++||+++.+
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~---------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSR---------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cchhhhcccCCceeeeecCCc---------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccc
Confidence 999999999999999997432 11223334457776 99999999985 999999999999999999764
Q ss_pred -EEEEEe---cCCceeEEEeCCCCCeEEEEcc------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 215 -HLSTVT---FPCAIMGLALDPTETDFFAAGS------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 215 -~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
++.... ...+-+.++|+|+.+.|++|+. .|.+++||..+.. .+..+ .-....|..+.|+|.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--------~v~ki-~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--------TVYKI-DISTASVVRCLWHPK 468 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--------eEEEe-cCCCceEEEEeecch
Confidence 444433 3456788999999999999864 5679999988732 22222 234678999999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 035621 285 GKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 285 ~~~l~s~~~dg~i~iwd 301 (387)
-+.|..|+.||++++|=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 99999999999999863
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=221.97 Aligned_cols=273 Identities=20% Similarity=0.321 Sum_probs=231.6
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK 114 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 114 (387)
+...+.+..|.++ .+.+++.++++++|+..++..+.. +. |.+.|.++++..-+.++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred CcchhhhheeecC------eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 4455777777743 233478999999999999987776 54 788999999998788999999999999999999
Q ss_pred CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621 115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (387)
|++.+.+.+|...+.++... ...+++|+.|.+|++|++ +++..+..+.+|.++|.++.+. +.
T Consensus 281 g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v------------~n~~~l~l~~~h~~~V~~v~~~----~~ 342 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV------------TNGACLNLLRGHTGPVNCVQLD----EP 342 (537)
T ss_pred CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEec------------cCcceEEEeccccccEEEEEec----CC
Confidence 99999999999999999885 457888999999999999 6778888888899999999886 37
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
++++|+.|++|++||+.++++++.+. |...|.++.+.+. ..+++|+.|+.|++||+.... .....+.+|.
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~ 413 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHT 413 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCc
Confidence 99999999999999999999999998 7889999988766 899999999999999999831 3444556888
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE------EEEecCCCceeeEEEecCCCCC
Q 035621 274 GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM------VIATGIGGSRGCGVVKTGKAGN 344 (387)
Q Consensus 274 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~~ 344 (387)
.-+..+.+ .+++|++++.|++|++||..++++++.+.+++.+.|+.+ .++.+.+.....|...++....
T Consensus 414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 414 SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 88877766 567999999999999999999999999998544566655 4456677777888888777644
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-29 Score=227.33 Aligned_cols=281 Identities=13% Similarity=0.110 Sum_probs=221.6
Q ss_pred ccccCCCcEEEeeC--CCCcEEEEeCCC------------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEE
Q 035621 2 LHHLPCNEVILTSS--PEGPITAYNPSS------------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH 67 (387)
Q Consensus 2 l~~s~~~~~l~~~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~ 67 (387)
++.+|||..+|||+ .||.+.||+.+. .+.+.+...|.+.|+|+.|+|++.++++ |+.|+.|.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs----GSDD~~v~ 94 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS----GSDDRLVM 94 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee----ccCcceEE
Confidence 46799999999999 999999998642 2345566789999999999996655554 99999999
Q ss_pred EEEccC----------C--------Cccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe
Q 035621 68 LYNLWS----------S--------TPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128 (387)
Q Consensus 68 vw~~~~----------~--------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 128 (387)
+|.... | +....+ .|...|..++|+|++.+|++++.|++|.+||..+.+.+..+++|.+.|
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV 174 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccc
Confidence 999873 0 011122 277899999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCCCceEEEEeC-
Q 035621 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSFNSIIISCSM- 201 (387)
Q Consensus 129 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~- 201 (387)
..+.|.|-|++|++-+.|++|++|++.+ ....+.+..+ ......+.|+|++ .+|++.-.
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwrt~d------------w~i~k~It~pf~~~~~~T~f~RlSWSPDG--~~las~nA~ 240 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWRTSD------------WGIEKSITKPFEESPLTTFFLRLSWSPDG--HHLASPNAV 240 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEEccc------------ceeeEeeccchhhCCCcceeeecccCCCc--Ceecchhhc
Confidence 9999999999999999999999999732 2223333222 2356788999985 88887643
Q ss_pred ---CCcEEEEeCCCCcEEEEE-ecCCceeEEEeCCC-----CC------------eEEEEccCCcEEEEecccccccccc
Q 035621 202 ---DCTCKFWRLLNGTHLSTV-TFPCAIMGLALDPT-----ET------------DFFAAGSDGLIYKGLLKYQSRQQMH 260 (387)
Q Consensus 202 ---d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~ 260 (387)
-.++.|.+-.+.+.-..+ .|..++.++.|+|. .+ .+|+|+.|+.|.||.....
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~------ 314 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP------ 314 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC------
Confidence 246788877666644444 48889999999972 11 5778899999999998652
Q ss_pred ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 261 KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
.++.....-....|..++|+|||..|+.++.||+|.+..++..++=
T Consensus 315 --RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 315 --RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred --CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 2222222234678999999999999999999999999999876543
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.8e-28 Score=179.27 Aligned_cols=278 Identities=13% Similarity=0.182 Sum_probs=217.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC------CCc---------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS------SGA---------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV 66 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v 66 (387)
++|+|.|.+.++|+...+.+|.... .+. ..+.-+.|.+.|.|.+|+|.+. .+++|+.|.+|
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge----liatgsndk~i 113 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE----LIATGSNDKTI 113 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC----eEEecCCCceE
Confidence 6899999999999999999887542 111 1223356889999999999554 45569999999
Q ss_pred EEEEccCCCc------ccccCCCCCeeeEEeccC----CCEEEEec-CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621 67 HLYNLWSSTP------LHNIPVPEPVAPLATTAD----GSYLFTGG-LSGNVYAISVPKGDILRSFSAHDKPVSCLKISP 135 (387)
Q Consensus 67 ~vw~~~~~~~------~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 135 (387)
++...+...+ +..-.|.+.|..++|..+ +..|++++ .|..|++-|...|+..+.+.+|.+.|.++- +-
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee
Confidence 9987654322 222237789999999653 45677665 466788889999999999999999998873 33
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--c-----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--A-----HNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iw 208 (387)
++-++++|+.|.+|++||++- ..++..+. . ..+.|.++++.|.+ ++|++|-.|....+|
T Consensus 193 n~~m~~sgsqdktirfwdlrv------------~~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~ly 258 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRV------------NSCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLY 258 (350)
T ss_pred cCcEEEccCCCceEEEEeeec------------cceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEE
Confidence 688999999999999999953 22333321 1 23568888888875 999999999999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621 209 RLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 209 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
|++.++.++.+. |...|.++.|+|...++++++.|..|++-|+...-..+ ........|...+..+.|+|..-.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccce
Confidence 999999999886 77899999999999999999999999999987532211 112223468899999999999989
Q ss_pred EEEEeCCCcEEEEECC
Q 035621 288 LVSAAEDGSVYIWEIE 303 (387)
Q Consensus 288 l~s~~~dg~i~iwd~~ 303 (387)
+++.+.|.++.+|-+.
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999999764
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=203.30 Aligned_cols=273 Identities=17% Similarity=0.188 Sum_probs=226.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee----Ee------------c--cCCCCCceeEEEcCccceeeeccccCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL----AH------------F--SGSRSPRRGLTFAGKPFIAASHISPTTGS 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------------~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d 63 (387)
++++|++.+.++++.+|+|.=|++.+++.. .. . +.|...+.+++.++++.+.+ +|+.|
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla----tgg~d 223 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA----TGGRD 223 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE----ecCCC
Confidence 568999999999999999999999887633 11 0 26778899999999665554 59999
Q ss_pred CeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 64 GSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
..|.||+.++.+.++.+. |.+.|.+++|-.....|++++.|+.+++|++.....+.++-+|...|.+|....-++.+.+
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence 999999999999999976 6789999999998889999999999999999999999999999999999998888888888
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-- 220 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 220 (387)
|+.|+++++|++ .......+.+|.+.+.|++|-.+ ..|++|+.+|.|.+|++.+.+++.+..
T Consensus 304 GgrDrT~rlwKi-------------~eesqlifrg~~~sidcv~~In~---~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 304 GGRDRTVRLWKI-------------PEESQLIFRGGEGSIDCVAFIND---EHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred ccccceeEEEec-------------cccceeeeeCCCCCeeeEEEecc---cceeeccCCceEEEeeecccCceeEeecc
Confidence 889999999999 22344567788999999999765 789999999999999999999887765
Q ss_pred c---C--------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 221 F---P--------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 221 ~---~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
| + ..|++++..|...++++|+.+|.|++|-+..+-+.. .+...+ .-.+.|++++|+++|++++
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEccCCCEEE
Confidence 2 1 268899999999999999999999999998854321 111112 3567899999999999766
Q ss_pred EE-eCCCcEEEE
Q 035621 290 SA-AEDGSVYIW 300 (387)
Q Consensus 290 s~-~~dg~i~iw 300 (387)
+| +....+--|
T Consensus 442 agiGkEhRlGRW 453 (479)
T KOG0299|consen 442 AGIGKEHRLGRW 453 (479)
T ss_pred Eeccccccccee
Confidence 65 344444334
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.9e-29 Score=223.00 Aligned_cols=282 Identities=17% Similarity=0.138 Sum_probs=224.6
Q ss_pred CCCCceeEEEcCccceeeeccccCC--CCCeEEEEEccCC------------Cccc-ccCCCCCeeeEEeccCCCEEEEe
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTT--GSGSVHLYNLWSS------------TPLH-NIPVPEPVAPLATTADGSYLFTG 101 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~--~d~~v~vw~~~~~------------~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 101 (387)
+...|.++..+|++ ..+++|+ .|+.+++|+.+.- +.+. ...|.+.|+|+.|+|||++||+|
T Consensus 12 ~~~~IfSIdv~pdg----~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG----VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCc----eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 34458999999954 4555688 8999999987421 1111 12277899999999999999999
Q ss_pred cCCCcEEEEeCCC------------------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 102 GLSGNVYAISVPK------------------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 102 ~~dg~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
+.|+.|.+|.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+|+.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~--------- 158 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA--------- 158 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc---------
Confidence 9999999999762 1256778899999999999999999999999999999999
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-------CCceeEEEeCCCCCe
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-------PCAIMGLALDPTETD 236 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~ 236 (387)
.+...+..+.+|.+.|..+.|.|-+ ++|++-+.|++|++|++.+....+.+.. ...+..+.|+|||.+
T Consensus 159 ---~tF~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 159 ---KTFELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred ---ccceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 5567889999999999999999985 9999999999999999888777777752 245889999999999
Q ss_pred EEEEcc----CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC------C-------C----EEEEEeCCC
Q 035621 237 FFAAGS----DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE------G-------K----NLVSAAEDG 295 (387)
Q Consensus 237 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~-------~----~l~s~~~dg 295 (387)
|++... -..+.|.+..+ ......+-+|.+++.++.|+|. . . .+|+|+.|+
T Consensus 234 las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred ecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 999754 33566766644 3333334589999999999982 1 1 678999999
Q ss_pred cEEEEECCCccEEEEeecccCCCceeEEEE--------ecCCCceeeEEEecCCCCCC
Q 035621 296 SVYIWEIEKRQVVMVLKNELAGSISEMVIA--------TGIGGSRGCGVVKTGKAGND 345 (387)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 345 (387)
+|-||.....+++.....-...+|.+|.++ .+.|+.+.+..++.+..|..
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred cEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 999999999999988887777788888554 55566666666665555443
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=197.75 Aligned_cols=214 Identities=21% Similarity=0.308 Sum_probs=181.7
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC------------C------ceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK------------G------DILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
.|..++.+.+|++||.++++|+.|..|+|+|++. + -.++++-.|...|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 3788999999999999999999999999999851 1 246778889999999999999999999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-- 220 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 220 (387)
|+.|++|++||+.+. .-+..........+|.++.|+|.+ .+|+.|....++++||+.+.++...-.
T Consensus 190 ~srD~tvKlFDfsK~----------saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKT----------SAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred ccCCCeEEEEecccH----------HHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999442 112222233455789999999996 999999999999999999998876654
Q ss_pred --cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEecCCCEEEEEeCCCcE
Q 035621 221 --FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 221 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
|...|+++.+++.+++.++++.||.|++||--.. ..+..+.+.|.+ .|.+..|..+|+|+++.+.|..+
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~--------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN--------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccH--------HHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 6678999999999999999999999999998763 333334446664 69999999999999999999999
Q ss_pred EEEECCCccEEEEeecc
Q 035621 298 YIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 298 ~iwd~~~~~~~~~~~~~ 314 (387)
++|.+.+++++..+.+.
T Consensus 330 kLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeecCCceEEEEecC
Confidence 99999999999998764
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-28 Score=211.22 Aligned_cols=261 Identities=18% Similarity=0.329 Sum_probs=215.7
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCcee--EeccCCCCCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAIL--AHFSGSRSPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V 82 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~ 82 (387)
++..+++++.||++++|+-...+.+ ..+.+|.+-|.. +++.+. ....+++|+.|.++.+|......+...+. |
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH 100 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH 100 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCCCCchhhhhcc
Confidence 3447899999999999997655543 345667776666 676651 11235569999999999999999998887 7
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 162 (387)
+..|.+++...++. +++|+.|.++++|- .+++...+.+|+..|.++++-|++ .+++|+.|.+|++|
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW---------- 166 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW---------- 166 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeec----------
Confidence 78999999888877 99999999999997 467777899999999999999987 89999999999999
Q ss_pred CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621 163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 241 (387)
..+..++++.+|.+-|+.+++.++ ..|++|+.||.|+.|++ +++++.++. |...+.++...+++..+++++
T Consensus 167 ----k~~~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 167 ----KGGTLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred ----cCCchhhhhccchhheeeeEEecC---CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 456788999999999999999887 57999999999999999 566665554 888999999888999999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.|+++++|+... +.+...-....|+++.+-++|. +++|+.||.||||....
T Consensus 239 EDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecCc-----------eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 999999998762 2222222344899999988876 78888999999998773
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=191.68 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=207.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee--Eec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL--AHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-- 75 (387)
++||.||++||+++.|+.|+||++.+.... +.+ .-.-+..+.+.|.|+- .+.+++.-...++++|.+...+
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc---~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC---KSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc---ceEEEEEccCCEEEEEEeeecccC
Confidence 689999999999999999999999764321 111 1112246788999963 2333345577789999874332
Q ss_pred -cccccC----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621 76 -PLHNIP----------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 76 -~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
....+- |.-.+..+....++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence 111111 23356666777788999999999999999997 899988887777778899999999999999
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEE
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLS 217 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~ 217 (387)
..-.|++|.+--..+ ..-..-..+..+.+|+..|..++|++++ ..+++.+.||++++||+.-. +.++
T Consensus 248 FTpDVkVwE~~f~kd----G~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 248 FTPDVKVWEPIFTKD----GTFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred CCCCceEEEEEeccC----cchhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 999999998721111 1112344667889999999999999986 89999999999999998521 2223
Q ss_pred EEe-----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 218 TVT-----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 218 ~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
... ..+....+.++|.|+.|+++.. ..++++..+.+ .....+...|...|.+++|+++|+++++++
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g--------~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDG--------KDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccC--------ccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 321 2345568999999998887653 47888887773 333344457999999999999999999986
Q ss_pred CCCcEEEEE
Q 035621 293 EDGSVYIWE 301 (387)
Q Consensus 293 ~dg~i~iwd 301 (387)
|..++++.
T Consensus 393 -dr~vrv~~ 400 (420)
T KOG2096|consen 393 -DRYVRVIR 400 (420)
T ss_pred -ceeeeeec
Confidence 67888876
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=189.16 Aligned_cols=286 Identities=15% Similarity=0.166 Sum_probs=211.3
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cc--ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TP--LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS 111 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 111 (387)
....+.|.+++|+|. ....++.++-|++||+|+++.. .. .....+.++|.+++|+.||..+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 345667999999992 1222334899999999999873 33 23445889999999999999999999999999999
Q ss_pred CCCCceeEEccCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 112 VPKGDILRSFSAHDKPVSCLKISPDGS--LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
+.+++ +..+..|.++|.++.|-+... .|++|+.|++|+.||.+ ...++.++. -.+.+.++..-
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R------------~~~pv~t~~-LPeRvYa~Dv~- 165 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR------------SSNPVATLQ-LPERVYAADVL- 165 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC------------CCCeeeeee-ccceeeehhcc-
Confidence 99995 566778999999999987655 89999999999999994 444444443 23455555442
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEEE-EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHLS-TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV 266 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 266 (387)
..+++.+..++.|.+|+++++.... .+. ..-.++|++..++....+.|+-+|.+.+..+........+. ....
T Consensus 166 ---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt-FkCH 241 (347)
T KOG0647|consen 166 ---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT-FKCH 241 (347)
T ss_pred ---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee-EEEe
Confidence 3688888999999999998764332 222 45678999999999889999999999999888743221111 1111
Q ss_pred eecc---cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce--eeEEEecCC
Q 035621 267 TLAN---RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR--GCGVVKTGK 341 (387)
Q Consensus 267 ~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~ 341 (387)
+... ..--.|++++|+|.-..|+|+|.||+..+||-+....+...+.+ ..+|++-.|.....-.. ...+...|.
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA~gYDWSkGh 320 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYALGYDWSKGH 320 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEEeeccccccc
Confidence 1100 01125889999999999999999999999999988888887766 45899888876544332 333334444
Q ss_pred CC
Q 035621 342 AG 343 (387)
Q Consensus 342 ~~ 343 (387)
++
T Consensus 321 e~ 322 (347)
T KOG0647|consen 321 EG 322 (347)
T ss_pred cc
Confidence 43
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.9e-29 Score=210.77 Aligned_cols=290 Identities=14% Similarity=0.219 Sum_probs=234.1
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCC--ceeEeccCCCCCceeEEE-cCccceeeeccccCCCCCeEEEEEccCCC--cccc
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSG--AILAHFSGSRSPRRGLTF-AGKPFIAASHISPTTGSGSVHLYNLWSST--PLHN 79 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~ 79 (387)
-.+++.|++++.|-+|++|+...+ -++.++..|..-|.|+++ .++..+. ++|+-|+.|.+||++++. .+..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lv----aSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELV----ASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeE----EecCCCccEEEEEccCcchhhhhh
Confidence 346789999999999999999877 577888999999999999 5644444 459999999999999872 3332
Q ss_pred cC----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621 80 IP----------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149 (387)
Q Consensus 80 ~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 149 (387)
+. +..+|++++.++.|..+++|+.++.+++||.++++.+..+++|...|.++..++||+.+++++.||+|
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 22 34679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGL 228 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~ 228 (387)
++||+ ....++.++..|...|+++..+|+- ..+++|+.||.|..=|+++. +....++...++..+
T Consensus 238 rlWdL------------gqQrCl~T~~vH~e~VWaL~~~~sf--~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l 303 (735)
T KOG0308|consen 238 RLWDL------------GQQRCLATYIVHKEGVWALQSSPSF--THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL 303 (735)
T ss_pred Eeeec------------cccceeeeEEeccCceEEEeeCCCc--ceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence 99999 6788999999999999999998876 89999999999999999984 455555677889999
Q ss_pred EeCCCCCeEEEEccCCcEEEEecccccccccccc---------ceeEeec------ccccccEEEEEEecCCCEEEEEeC
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG---------QELVTLA------NRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
..+...+.+.+++.|+.|.-|............. ....... ......+...+.-.|.++++|-..
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa 383 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA 383 (735)
T ss_pred hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence 9987777779999999999998765321111000 0000000 001123444445567889999999
Q ss_pred CCcEEEEECCCccEEEEee
Q 035621 294 DGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~ 312 (387)
.|.+.+||+-..+.+..+.
T Consensus 384 ~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 384 KGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCEEEEEeeeeeehhhcc
Confidence 9999999999888777664
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.3e-28 Score=190.53 Aligned_cols=262 Identities=18% Similarity=0.235 Sum_probs=207.6
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD 116 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 116 (387)
....|.++.|+| ..+.|+.++.||++++|++........+.+..++.+++|.++ ..+++|+.||.|+.+|+.+++
T Consensus 12 P~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcC----cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence 356699999998 444455578999999999999988899999999999999985 578999999999999998877
Q ss_pred eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
.. .+..|..+|+|+.+++....+++|+.|++|++||.+. ......+. ....|.++... ++.|
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------------~~~~~~~d-~~kkVy~~~v~----g~~L 148 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------------KVVVGTFD-QGKKVYCMDVS----GNRL 148 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------------cccccccc-cCceEEEEecc----CCEE
Confidence 54 4567999999999999888999999999999999953 11222222 23377777653 4789
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621 197 ISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 197 ~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
+.|+.|..+.+||+++........ .+-.+.++++-|++.-+++++-||.|.+=.+...+..+. ....++.|.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-----kkyaFkCHr 223 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-----KKYAFKCHR 223 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-----hceeEEeee
Confidence 999999999999999876554332 567899999999999999999999999877665421111 111112232
Q ss_pred ---------ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 274 ---------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 274 ---------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
-+|++++|+|-...|+||+.||.|.+||+.+.+.+..+... +.+|..+.|+..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~d 285 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMD 285 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccC
Confidence 37999999999999999999999999999999999999766 557888877643
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-29 Score=187.80 Aligned_cols=236 Identities=18% Similarity=0.222 Sum_probs=189.7
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 6 PCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
-.|++|||++.|++|+|+...+. +++.+|.+|.+||..++|..-. ....|++++.||.|.||.-+.++-.+...
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk--~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK--FGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc--cCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 35889999999999999998754 5688999999999999997411 34556669999999999998885444443
Q ss_pred --CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCC---C-----------CEE
Q 035621 82 --VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPD---G-----------SLL 140 (387)
Q Consensus 82 --~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l 140 (387)
|...|++++|.|. |-.|++++.||.|.+.+.++. ...+....|.-.|++++|.|. | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 6788999999985 678999999999999988654 223345689999999999985 4 569
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCCCcEEE-
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLNGTHLS- 217 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~- 217 (387)
++|+.|..|+||+... .....-..+.+|.+-|+.++|+|.. ....|++|+.||++.||..+......
T Consensus 179 vSgGcDn~VkiW~~~~----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDS----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred eccCCccceeeeecCC----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 9999999999999843 1233445588999999999999974 23689999999999999876321111
Q ss_pred -EE--ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 218 -TV--TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 218 -~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
++ +++..+..+.|++.|+.|++++.|+.+.+|.-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 11 2578899999999999999999999999997654
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-29 Score=211.65 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=200.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN- 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~- 79 (387)
+.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|... .+.+|+.++.|..+|+...+....
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~------~lssGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS------VLSSGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc------eEEEecCCCcEEEEEEecchhhhhh
Confidence 57999999999999999999999999999999998 9999999999953 233489999999999988766555
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEe--CCCcEEEEeCC
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGG--DDGVIATVPIF 155 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~ 155 (387)
+. |...|..+.|++|+.++|+|+.|+.+.|||....++...+..|.+.|..++|+| ...+||+|+ .|+.|++||.
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~- 375 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT- 375 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc-
Confidence 44 778999999999999999999999999999988888999999999999999999 566888875 6999999999
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT 233 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 233 (387)
..+..+... .....|.++.|++.. +.++.+ |..+..|.||+..+.+.+..+. |...|..++++||
T Consensus 376 -----------~~g~~i~~v-dtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 376 -----------NTGARIDSV-DTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred -----------CCCcEeccc-ccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 444444444 345789999999986 334433 3346789999999988888887 8889999999999
Q ss_pred CCeEEEEccCCcEEEEecccc
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~ 254 (387)
|..+++|+.|.++++|++-..
T Consensus 443 g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 443 GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCEEEEecccCcEEeccccCC
Confidence 999999999999999998763
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=7.8e-28 Score=199.84 Aligned_cols=264 Identities=11% Similarity=0.121 Sum_probs=197.5
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----cccccC--CCCCeeeEEeccCCCEEEEecC
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNIP--VPEPVAPLATTADGSYLFTGGL 103 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 103 (387)
....+++|+..|.++++.| .+..+++|+.|..|++||+.... ..+.+. ....|..+.|++.|..|++.+.
T Consensus 159 hEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 3456788999999999999 66778889999999999996542 222232 2357999999999999999888
Q ss_pred CCcEEEEeCCCCceeE------------EccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 104 SGNVYAISVPKGDILR------------SFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
....+++|-...+... .-++|...++|.+|+|.. ..+++++.||++++||+.+.. .
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-----------~ 303 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-----------S 303 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-----------h
Confidence 8999999954333222 225789999999999955 489999999999999995421 1
Q ss_pred ceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe--cC--CceeEEEeCCCCCeEEE
Q 035621 171 MLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT--FP--CAIMGLALDPTETDFFA 239 (387)
Q Consensus 171 ~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~--~~v~~~~~~~~~~~l~~ 239 (387)
....+ .+..-+++..+|++++ .+|++|..||.|.+|+...... ...+. |. ..|+|+.|+++|++|++
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 11111 1233467888888885 8899999999999999865432 22222 43 48999999999999999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC------CCcEEEEECCCccEEEEeec
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE------DGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 313 (387)
-+.|+.+++||++.......... .+ ...-+-+.++|||+.++|++|.. .|.+.+||..+-+.++++.-
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~t----gL--~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRT----GL--PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred ccCCCceeeeeccccccchhhhc----CC--CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 99999999999997432111000 00 12234678999999999999853 57899999999999988876
Q ss_pred ccC
Q 035621 314 ELA 316 (387)
Q Consensus 314 ~~~ 316 (387)
...
T Consensus 456 ~~a 458 (641)
T KOG0772|consen 456 STA 458 (641)
T ss_pred CCc
Confidence 533
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=213.95 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=218.9
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCc----eeEeccCC---CCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGA----ILAHFSGS---RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-- 73 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-- 73 (387)
+..++-..++.++. ..++||.+.... +...++.. .-.+..+.|.. +...++++++..|.|.+||+..
T Consensus 46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~---~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ---LYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred eecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc---chhhhheeecCCCcEEEEecCccc
Confidence 44566666777665 467777765322 11111111 11255677763 3556888999999999999977
Q ss_pred -CCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 035621 74 -STPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVI 149 (387)
Q Consensus 74 -~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 149 (387)
.+.+..+. |...++++.|++ ..++|++|+.||.|++||++..+-..++.+....|+.++|+| .+..++++...|.+
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 44444554 778999999998 457899999999999999999988888888889999999999 67799999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMG 227 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~ 227 (387)
++||+++ ...+...+.+|.++|.++.|+|+ +.+|+||+.|++|+|||+.+.+ .+.++..-.++.+
T Consensus 202 qlWDlRq-----------p~r~~~k~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r 268 (839)
T KOG0269|consen 202 QLWDLRQ-----------PDRCEKKLTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR 268 (839)
T ss_pred EEeeccC-----------chhHHHHhhcccCceEEEeecCC--CceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence 9999974 55677888999999999999996 5999999999999999998654 5666677889999
Q ss_pred EEeCCCCCe-EEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 035621 228 LALDPTETD-FFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 228 ~~~~~~~~~-l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.|-|...+ |++++. |-.|++||++- ...+...+..|...++.++|.. |...|.+++.||+|..-.++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrR--------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRR--------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeecc--------ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 999998765 444443 88999999986 3445555668999999999964 45688899999998776666
Q ss_pred CccE
Q 035621 304 KRQV 307 (387)
Q Consensus 304 ~~~~ 307 (387)
+...
T Consensus 341 nat~ 344 (839)
T KOG0269|consen 341 NATT 344 (839)
T ss_pred cccC
Confidence 5543
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1e-26 Score=192.76 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=233.1
Q ss_pred ccccCC--CcEEEee--CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLPC--NEVILTS--SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
++||+. |.+|+.- +.+..+.|||.+.+......+...+.|....|+|. ...++.....+.+.+|+.+.+...
T Consensus 160 vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPt----d~nliit~Gk~H~~Fw~~~~~~l~ 235 (626)
T KOG2106|consen 160 VAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPT----DPNLIITCGKGHLYFWTLRGGSLV 235 (626)
T ss_pred eeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccC----CCcEEEEeCCceEEEEEccCCceE
Confidence 567763 4555543 34556899999988888888878888999999992 222333567889999999887655
Q ss_pred ccc---C--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 78 HNI---P--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 78 ~~~---~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
+.. + ....|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+| +|+.|+.|..|
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~W 313 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILW 313 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEec
Confidence 433 2 235699999999987 6799999999999998888777777999999999999999755 59999999999
Q ss_pred eCCcccccCCCCCC-----------------------------CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 153 PIFQLVDEHTDDKN-----------------------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 153 d~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
|- ........+.. -.........+|......++.+|+. +.+++++.|+
T Consensus 314 d~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk 390 (626)
T KOG2106|consen 314 DD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDK 390 (626)
T ss_pred cc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcc
Confidence 93 21111100000 0111222346788889999999986 8999999999
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
.+++|+ ..+++.+.....+..++.|+|.| .+++|+..|...+.|.++. .+...... ..+++.++|+|
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---------~lv~~~~d-~~~ls~v~ysp 457 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---------DLVTIHTD-NEQLSVVRYSP 457 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccc---------eeEEEEec-CCceEEEEEcC
Confidence 999999 67777787888999999999999 9999999999999999872 23333223 78899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-ccEEEEeecccCCCceeEEEEecC
Q 035621 284 EGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
+|.+||.|+.|+.|+||.+.. ++.......+...+|+.+.|++.+
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 999999999999999999876 445555544444688888777654
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.7e-28 Score=196.09 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=195.7
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 164 (387)
.+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|++|..
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~---------- 290 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV---------- 290 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc----------
Confidence 4677777777788999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCCCCeEEEEc
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~ 241 (387)
+..........|..+|+.+..+|.+ .||++++.|++..+.|++++..+....+. -.+++.+|+|||..+.+|.
T Consensus 291 --~~~s~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 291 --PLSSEPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred --ccccCccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 5555667778999999999999985 99999999999999999999999888764 3589999999999999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE 321 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 321 (387)
.||.+++||+..+. ...-+.+|.++|..++|+.+|-+|+++++|+.|++||++.-+...++.......+..
T Consensus 367 ~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred CCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 99999999999833 223345799999999999999999999999999999999999888888766657777
Q ss_pred EEEEecC
Q 035621 322 MVIATGI 328 (387)
Q Consensus 322 ~~~~~~~ 328 (387)
+.|...+
T Consensus 438 ~~fD~SG 444 (506)
T KOG0289|consen 438 LSFDQSG 444 (506)
T ss_pred EEEcCCC
Confidence 7665433
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=4.1e-28 Score=198.53 Aligned_cols=249 Identities=17% Similarity=0.277 Sum_probs=191.3
Q ss_pred ccCC-CcEEEeeCCCCcEEEEeCCCCc----------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 4 HLPC-NEVILTSSPEGPITAYNPSSGA----------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 4 ~s~~-~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
+-|+ ..++|+++..+.|+|||..+.. +-..+.+|...-.++.|++. ....+++++.|++|++||+.
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~---~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ---QEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc---cceeEeeccCCCcEEEEecc
Confidence 3454 4578888999999999986422 12267889998889999984 33456679999999999996
Q ss_pred CCCcc-------ccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEcC-CCCEE
Q 035621 73 SSTPL-------HNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKISP-DGSLL 140 (387)
Q Consensus 73 ~~~~~-------~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l 140 (387)
..... ..+ .|...|..++|++ +..++++++.|+.+.|||++ +.++.....+|.+.|.|++|+| ++..|
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 55331 112 2678899999999 55678889999999999999 5566777889999999999999 66789
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 220 (387)
|+|+.|++|++||+|++ ..++..+.+|...|..+.|+|.. ...|++++.|+.+.+||+..-...+.-.
T Consensus 289 AT~S~D~tV~LwDlRnL-----------~~~lh~~e~H~dev~~V~WSPh~-etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNL-----------NKPLHTFEGHEDEVFQVEWSPHN-ETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EeccCCCcEEEeechhc-----------ccCceeccCCCcceEEEEeCCCC-CceeEecccCCcEEEEeccccccccChh
Confidence 99999999999999864 34788999999999999999986 6899999999999999986532222100
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEE
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYI 299 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i 299 (387)
.. .|| ..++.-.-.+|...|..+.|+|+.. .|++.++|+.+.|
T Consensus 357 ---------da----------~dg-----------------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 357 ---------DA----------EDG-----------------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred ---------hh----------ccC-----------------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 00 000 1223333457888999999999876 4667889999999
Q ss_pred EECC
Q 035621 300 WEIE 303 (387)
Q Consensus 300 wd~~ 303 (387)
|+..
T Consensus 401 W~~s 404 (422)
T KOG0264|consen 401 WQMA 404 (422)
T ss_pred eecc
Confidence 9865
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.6e-27 Score=184.82 Aligned_cols=280 Identities=15% Similarity=0.215 Sum_probs=210.8
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCc----------eeE-----eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 7 CNEVILTSSPEGPITAYNPSSGA----------ILA-----HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
.|+++++|+.||.|.+||+++.. ... .-.+|.-.|..+.|-|- ....+.+++-|.++++||.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---DTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee---cCceeecccccceEEEeec
Confidence 58999999999999999997532 011 11357778999999982 2234445899999999999
Q ss_pred cCCCcccccCCCCCeeeEEeccC---CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCC
Q 035621 72 WSSTPLHNIPVPEPVAPLATTAD---GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDG 147 (387)
Q Consensus 72 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 147 (387)
++.+....++.++.|+.-+++|- ..++|+|..+-.|++-|+.+|...+++.+|.+.|.++.|+|... .|++|+.||
T Consensus 132 nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 132 NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 99999999999999999999993 45788888889999999999999999999999999999999766 578999999
Q ss_pred cEEEEeCCccccc-CCCCC-C-CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-EEe---
Q 035621 148 VIATVPIFQLVDE-HTDDK-N-PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-TVT--- 220 (387)
Q Consensus 148 ~i~iwd~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~--- 220 (387)
.|++||+++.... ..... + .....++.-..|.+.++.++|..++ .++++++.|..+++|+..+|+... .+.
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc--hhhhhccCccceEEeecccCccccccccccc
Confidence 9999999864111 00000 0 1222333456899999999998775 899999999999999998875321 111
Q ss_pred cC----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 221 FP----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 221 ~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
++ -.+. +. +.+...++.--.++.+.++.+-.+ .....+..|...|.+.++-|+-+...+|..|+.
T Consensus 290 ~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sg---------s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 290 HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEG---------SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGN 358 (397)
T ss_pred ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCc---------eEEEeeecccceeeEEeecCchhhhhccccCCc
Confidence 11 1111 22 223333333344578888877663 233344578888999999999999999999999
Q ss_pred EEEEEC
Q 035621 297 VYIWEI 302 (387)
Q Consensus 297 i~iwd~ 302 (387)
|..|-.
T Consensus 359 i~~w~p 364 (397)
T KOG4283|consen 359 IYMWSP 364 (397)
T ss_pred cccccc
Confidence 999986
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4e-27 Score=202.14 Aligned_cols=273 Identities=23% Similarity=0.305 Sum_probs=217.9
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc--C-CCCCeee-EEecc-CCCEEEEec
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI--P-VPEPVAP-LATTA-DGSYLFTGG 102 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~--~-~~~~v~~-~~~~~-~~~~l~~~~ 102 (387)
.+..+.+.+|...|..+++.+.. .+++++.||++++|+-..++.+... . +.+-+.+ +++.+ ++-.+++|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec
Confidence 35667889999999999887743 4455899999999998666655432 2 3444544 67765 555699999
Q ss_pred CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
.|+.+.+|.+.+..++..+++|+..|.++....++. +++|+.|.++++|.. +.+...+.+|+..|
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--------------~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--------------GELVYSLQGHTASV 143 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--------------hhhhcccCCcchhe
Confidence 999999999999999999999999999999887776 999999999999965 44566689999999
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 261 (387)
+++...|. +.++||+.|.+|++|.- ++.+++|. |...|+.+++-+++ .++++++||.|++|++..
T Consensus 144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-------- 209 (745)
T KOG0301|consen 144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-------- 209 (745)
T ss_pred eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--------
Confidence 99998887 58999999999999974 77788887 78899999998764 678899999999999954
Q ss_pred cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE-------EecCCCceee
Q 035621 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI-------ATGIGGSRGC 334 (387)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~ 334 (387)
.......+|+..|.++...+++..++++++|++++||+.. ++++.+..... +++++.+ ..++|+.+.+
T Consensus 210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCEEEeccCceEEE
Confidence 2233345899999999988888999999999999999977 77777765432 5665532 3344554566
Q ss_pred EEEec
Q 035621 335 GVVKT 339 (387)
Q Consensus 335 ~~~~~ 339 (387)
+....
T Consensus 285 fT~~k 289 (745)
T KOG0301|consen 285 FTVDK 289 (745)
T ss_pred EEecc
Confidence 55543
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=195.21 Aligned_cols=279 Identities=17% Similarity=0.234 Sum_probs=221.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+.|+|...+|++|+.||.++||.+. +...++.+.-...||.+..|.|++. +.+++++....++.||+++.+....
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~---~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH---SVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc---eEEEecccceEEEEeeccccccccc
Confidence 6899999999999999999999874 3345666666778899999999543 2445588999999999988865543
Q ss_pred cC---C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 80 IP---V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 80 ~~---~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
-+ + ...+..+..++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+||+
T Consensus 296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl- 373 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNL- 373 (514)
T ss_pred cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEec-
Confidence 33 1 2357788999999999999999999999999999999887 4788999999999999999999999999999
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC------CcEEEEEe-cCCceeEE
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN------GTHLSTVT-FPCAIMGL 228 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~~~~v~~~ 228 (387)
....+++.+.. .+.|....+++..++.+|++|+..|.|.|||..+ .+++..+. ....|+++
T Consensus 374 -----------~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 374 -----------RQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred -----------CCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 44456666653 4556555556555569999999999999999653 34555554 56789999
Q ss_pred EeCCCCCeEEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 229 ALDPTETDFFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 229 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.|+|+...|+.++. +..+++-.+.+....... +.. ...-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf---P~~---n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF---PTS---NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccC---CCC---CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999998876 677888777663322211 111 2334579999999999999999999999999864
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.1e-27 Score=178.12 Aligned_cols=229 Identities=16% Similarity=0.267 Sum_probs=198.4
Q ss_pred cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 76 PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
++....|+.+++.+.++.+|.+|++++.|....+|--.+|+.+.++.+|.+.|.|+..+.+.+.+++|+.|.++++||+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv- 81 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV- 81 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc-
Confidence 3444458889999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-----CCcEEEEeCC-------CCcEEEEEe-cC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-----DCTCKFWRLL-------NGTHLSTVT-FP 222 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-------~~~~~~~~~-~~ 222 (387)
+.++.+..++ -..+|..+.|++++ ++++.+.. .+.|.++|++ ..++...+. ..
T Consensus 82 -----------~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 82 -----------ETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred -----------CCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 6777777765 45789999999885 66665544 3679999998 344566665 56
Q ss_pred CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 223 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
+.++.+.|.|-+++|++|..||.|..||.++ +.+.......|...|+.++++||..++++++.|.+-++||+
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~--------g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDART--------GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEccc--------CceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 8899999999999999999999999999998 45566666679999999999999999999999999999999
Q ss_pred CCccEEEEeecccCCCceeEEEEecCC
Q 035621 303 EKRQVVMVLKNELAGSISEMVIATGIG 329 (387)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (387)
.+-++++++... .+|++.+++|-.+
T Consensus 220 ~tl~v~Kty~te--~PvN~aaisP~~d 244 (327)
T KOG0643|consen 220 RTLEVLKTYTTE--RPVNTAAISPLLD 244 (327)
T ss_pred cceeeEEEeeec--ccccceecccccc
Confidence 999999999865 4688888877443
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.3e-27 Score=206.64 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=215.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|.|+|++|++++.||.|++|+..+. +...++..+...|.+++.... ++++++.+++|.+|.+.+++.-..+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~------~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN------HFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc------ceEEeeccceEEEeeCCCCCcccee
Confidence 689999999999999999999998766 444445447778888887764 5555889999999999888765433
Q ss_pred -CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 81 -PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 81 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
+..-++.+++|+.+|+++|.|+.|-.|++.++.+......+++|.++|.++.|+|++++|++.+-||.|++||+.....
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999943221
Q ss_pred cCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCC
Q 035621 160 EHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTET 235 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~ 235 (387)
...... ....... ....+..++|+|++ ..++....|+.|++|+....+....+. +...+..++|+|.|+
T Consensus 173 ~~tl~~-----v~k~n~~~~s~i~~~~aW~Pk~--g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 173 SKTLTG-----VDKDNEFILSRICTRLAWHPKG--GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred hhhccc-----CCccccccccceeeeeeecCCC--CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 111000 0000111 14566788999986 566667789999999999999888876 344599999999999
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
|||+++.+|.|.+||..+-.+ ......|.+++|.|+...+-.-...|...+|
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~-------------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER-------------HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEeeeccCCcEEEEecccchh-------------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999999999999987211 1234579999999988766554445544444
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.7e-27 Score=196.18 Aligned_cols=270 Identities=15% Similarity=0.229 Sum_probs=217.0
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
.+|...+++.||+. |.|+|||+... .++..+.. ...-|+++...|++. .+++|+.-.++.|||+....+.
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr----tLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc----eEEeccccceeeeeeccCCCcc
Confidence 45667788999886 88999998632 23334432 234488888888543 3445888999999999776554
Q ss_pred cccCCC---CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 78 HNIPVP---EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 78 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
...+.. -..++++.+||.+..+++..||.|.|||+.+...++.|++|...+.||..++||..|-+|+-|.+|+.||+
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 433332 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
++. ..+... ...+.|.++.++|.+ .+++.|-.++.+.+-.....+......|.+-|.++.|.+.|
T Consensus 581 reg------------rqlqqh-dF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 581 REG------------RQLQQH-DFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred hhh------------hhhhhh-hhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence 542 222221 234678999999985 99999999999999887766655555688999999999999
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
+++++.+.|+.+..|....+. .+.+. .....|.++..|.|.++|+||+.|..-.+|.+
T Consensus 646 kwfvStGkDnlLnawrtPyGa--------siFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGA--------SIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCchhhhhhccCcccc--------ceeec--cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999887743 22222 45778999999999999999999998888875
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.2e-27 Score=201.12 Aligned_cols=273 Identities=16% Similarity=0.242 Sum_probs=215.6
Q ss_pred EEEeeCCCCcEEEEeCCCCc---eeE----------------------------------eccCCCCCceeEEEcCccce
Q 035621 10 VILTSSPEGPITAYNPSSGA---ILA----------------------------------HFSGSRSPRRGLTFAGKPFI 52 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~---~~~----------------------------------~~~~~~~~v~~~~~~~~~~~ 52 (387)
-++|++.|++|++||+..+. ..+ ..-.....+++++.+|++..
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 48999999999999986421 100 00012335899999996554
Q ss_pred eeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEecc---CCCEEEEecCCCcEEEEeCCC-CceeEEccCCCCC
Q 035621 53 AASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTA---DGSYLFTGGLSGNVYAISVPK-GDILRSFSAHDKP 127 (387)
Q Consensus 53 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 127 (387)
+++|..-|.+++|++..-+....+. |...|.|+.|+. ..++||+++.|..|++||+.. -.++.++.+|...
T Consensus 474 ----LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 474 ----LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ----ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 4559999999999999888777776 778999999986 357899999999999999854 4667888999999
Q ss_pred eEEEEEcCCC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 128 VSCLKISPDG--SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 128 v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
|+++.|.-+| ..+++++.|+.|.+ +..+.... ....+..+.......+..+++.|.. .++++++.|..|
T Consensus 550 ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~------g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni 620 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS------GRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI 620 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhhe-ehhccccC------ceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence 9999998876 68999999998754 33210000 0011111111223567888888875 899999999999
Q ss_pred EEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 206 KFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 206 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
+|||+.+++..+.|+ +.+....+...|.|.|+++.+.|.++.++|+.++ ++.....+|...|+.+.|
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence 999999999999997 4577889999999999999999999999999873 333444589999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC
Q 035621 282 MNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 282 s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.+|-+.|++.+.||.|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99999999999999999999865
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-24 Score=163.16 Aligned_cols=240 Identities=16% Similarity=0.200 Sum_probs=191.1
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC------CC-----c-----ccccCCCCCeeeEEeccCCCEEEE
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS------ST-----P-----LHNIPVPEPVAPLATTADGSYLFT 100 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~------~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~ 100 (387)
....|++++|+|.+.+. +.|+...++++-.... +. + .+...|.+.|+|.+|+|+|.++++
T Consensus 31 dsqairav~fhp~g~ly----avgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLY----AVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred chhheeeEEecCCCceE----EeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 55679999999955444 3488888888864421 11 1 111126688999999999999999
Q ss_pred ecCCCcEEEEeCCCCce-----eEEccCCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 101 GGLSGNVYAISVPKGDI-----LRSFSAHDKPVSCLKISPD----GSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 101 ~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
|+.|.+|++.-++...+ -..+.-|.+.|..++|-.+ +.+|++++ .|..|++-|. ..+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc------------~~g~ 174 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC------------GRGQ 174 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec------------CCCC
Confidence 99999999987654322 2356679999999999653 45677765 4677887787 6778
Q ss_pred ceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---c-----CCceeEEEeCCCCCeEEEEcc
Q 035621 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---F-----PCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-----~~~v~~~~~~~~~~~l~~~~~ 242 (387)
..+.+.+|.+.|.++- +.+ +-++++|+.|.+|++||++-..++.++. + .+.|.+++..|.|++|++|-.
T Consensus 175 ~~~a~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 175 GFHALSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred cceeecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 8899999999998763 444 4899999999999999999999888875 1 257999999999999999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
|....+||++.+ ...+.+..|...|.++.|+|...|+++++.|..|++=|++.
T Consensus 252 dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 252 DSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 999999999973 33344457999999999999999999999999999999874
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=180.28 Aligned_cols=231 Identities=14% Similarity=0.170 Sum_probs=187.0
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VP 83 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~ 83 (387)
.-++.++|+|+.|-+|+|||..+...+..+-.|.+.|+++.|.+.. ..+.+.+|+.||.|.+|+...-+++..++ |.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~--S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~ 127 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPL--SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK 127 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCc--chhheeeecCCCcEEEEEcCCeEEeeeecccc
Confidence 3478999999999999999999999999999999999999999843 22378889999999999998888888887 66
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
..|+.++.+|.+++-++.+.|+.++.||+-.|+.-..++- ...-+.+.|+|.|.+++.++.+ .|-+|.+.
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d-------- 197 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLD-------- 197 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecc--------
Confidence 7899999999999999999999999999988876544432 2223459999999999888876 47788772
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEe--CCCCCeEEEE
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL--DPTETDFFAA 240 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~ 240 (387)
.......+. ....+.++.|.. +..|++|+.|+.|.+||..+..+...+. |+..|-.+.+ .|++.+|+++
T Consensus 198 ----~A~v~~~i~-~~~r~l~~~~l~---~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 198 ----NASVFREIE-NPKRILCATFLD---GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred ----cHhHhhhhh-ccccceeeeecC---CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence 222222221 224455565543 4799999999999999999988888877 8889998874 4678899999
Q ss_pred ccCCcEEEEeccccc
Q 035621 241 GSDGLIYKGLLKYQS 255 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~ 255 (387)
+.||.|++||++...
T Consensus 270 SSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 270 SSDGFIKVWDIDMET 284 (362)
T ss_pred ccCceEEEEEccccc
Confidence 999999999998753
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=179.72 Aligned_cols=277 Identities=13% Similarity=0.129 Sum_probs=210.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|++.|.+||+|..||.|.|||..|...-+.+.+|..+|.+++|++++.. +++++.|..+.+||+..|.+++.+.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~----LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRK----LLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCE----eeeecCCceeEEEeccCCCceeEEE
Confidence 579999999999999999999999999999999999999999999995544 4459999999999999999999999
Q ss_pred CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 82 VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+.+|..+.|+|... ..++.-.+..-.+.++..+.....-... ...-.+..|.+.|+++++|...|.+.++|.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a-- 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA-- 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec--
Confidence 999999999999543 3333334444455555443221111111 112234468999999999999999999998
Q ss_pred ccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cE--EEEEe---cCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------TH--LSTVT---FPC 223 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~--~~~~~---~~~ 223 (387)
.+.+++..++... ..|..+.++..+ +.|+.-+.|+.||.|+++.- ++ .+.++ ...
T Consensus 183 ----------~t~e~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 183 ----------ETLECVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ----------chheeeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 5556677666655 788889888774 89999999999999998631 11 11111 234
Q ss_pred ceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 224 AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+-.+++|+.+|.|+++++. ...+|+|....+. ++..+.+.. .....+.|+|-...+++- ..|.|+||.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---------LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---------LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcc---------eeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 5678999999999999875 6789999988743 333333444 467789999988888877 788999998
Q ss_pred CCCcc
Q 035621 302 IEKRQ 306 (387)
Q Consensus 302 ~~~~~ 306 (387)
...-+
T Consensus 321 ~~~~e 325 (405)
T KOG1273|consen 321 VVQVE 325 (405)
T ss_pred eeccc
Confidence 65443
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=195.50 Aligned_cols=280 Identities=15% Similarity=0.211 Sum_probs=202.8
Q ss_pred CcEEEeeCCCCcEEEEeCCCCce------eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc--
Q 035621 8 NEVILTSSPEGPITAYNPSSGAI------LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-- 79 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-- 79 (387)
..+|+.+.+||.|.++|...... +..+..|...|..+.|.| ....|++++.|.++++||+++.+....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccceeeccee
Confidence 35799999999999999865433 355678999999999999 445666799999999999998877664
Q ss_pred -cCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc---------------------------eeEEccCCCCCeEE
Q 035621 80 -IPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD---------------------------ILRSFSAHDKPVSC 130 (387)
Q Consensus 80 -~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---------------------------~~~~~~~~~~~v~~ 130 (387)
+.|...|..++|.|. ...+++|+.||.|.|||++-.. .+...+++...|.+
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 558899999999995 5678899999999999985321 11122334444555
Q ss_pred ---EEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeecc---CCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 131 ---LKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH---NDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 131 ---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
+.+..|...|++++. |+.|++||+++........ ......+..| .-.+.++.. +..|.+|++.+.|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~~~~~t~skrs~G~~nL~l--DssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE----PRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFASCTDN 293 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccC----CCcccCccCcccceeeeEEEEe--cCCCCeEEEEecCC
Confidence 555668888999887 9999999998754432211 1122222233 224445544 44456666666799
Q ss_pred cEEEEeCCCCc--EEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621 204 TCKFWRLLNGT--HLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 204 ~i~iwd~~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (387)
.|++|++.+.. +...+.+ ...-..-..+|++.++++|+.|...++|.+.. .......+.+|...|++
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~--------~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS--------PEAPPALLLGHTREVTT 365 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC--------ccCChhhhhCcceEEEE
Confidence 99999998643 2333321 12233456789999999999999999999987 33444455689999999
Q ss_pred EEEecCC-CEEEEEeCCCcEEEEECCCc
Q 035621 279 VMMMNEG-KNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 279 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 305 (387)
++|.|.. .-+++++.|..+++|++.++
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCc
Confidence 9998743 34677799999999999765
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.2e-27 Score=176.12 Aligned_cols=250 Identities=17% Similarity=0.209 Sum_probs=194.9
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---ccccC-CCCCeeeEEecc--CCCEEEEecCCCcEE
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNIP-VPEPVAPLATTA--DGSYLFTGGLSGNVY 108 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 108 (387)
..|.+.|..+...- ...+++|++.|++|+|+.+..+.. +.++. |.+||..++|.. .|.+||+++.||.|.
T Consensus 8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 45777777766554 556778899999999999977654 33333 789999999976 799999999999999
Q ss_pred EEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEE
Q 035621 109 AISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA 184 (387)
Q Consensus 109 i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 184 (387)
||.-++++ .......|...|++++|.|. |-.|++++.||.|.+.+.+.. ......+....|.-.|++
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---------g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---------GGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---------CCccchhhhhccccccce
Confidence 99987774 34456689999999999995 568999999999999988432 122233455789999999
Q ss_pred EEEeeCCCC------------ceEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceeEEEeCCCC----CeEEEEccCCc
Q 035621 185 ITCCIGSFN------------SIIISCSMDCTCKFWRLLNGT--HLSTVT-FPCAIMGLALDPTE----TDFFAAGSDGL 245 (387)
Q Consensus 185 ~~~~~~~~~------------~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~----~~l~~~~~dg~ 245 (387)
++|.|.... ..|++|+.|..|+||+..+++ ...++. |..-|+.++|.|.- .+|++++.||+
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 999987322 469999999999999998863 222344 77889999999964 57999999999
Q ss_pred EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.||......... ...++......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus 235 viIwt~~~e~e~w------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 235 VIIWTKDEEYEPW------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEEecCccCcc------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999877421111 112223356789999999999999999999999999744
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=186.55 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=215.0
Q ss_pred ccccCCC--cEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCN--EVILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
++|+|.. +++|+|...|.|-+||+.+. .-+..+..|..+|.++.|+|. ..+.+++.+.||+|++-|++.+.
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~---n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA---NTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC---ChhheeeeccCceeeeeeecchh
Confidence 6899975 58899999999999999422 235567889999999999994 34566678999999999998775
Q ss_pred cccccCC---CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 035621 76 PLHNIPV---PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIA 150 (387)
Q Consensus 76 ~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 150 (387)
....+.. ...+..+.|+.+...++++..=|...+||++++.. ...+.-|...|++++++| ...+|++++.|++.+
T Consensus 269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence 4433333 24577888998888888888778999999988754 556677888999999999 456899999999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC----CCCcEEEEEecCC---
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL----LNGTHLSTVTFPC--- 223 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~----~~~~~~~~~~~~~--- 223 (387)
|||++++....+ ++.....|...|.+..|+|.+ +. |+|.+.|..|+|||. ....+...+.|+.
T Consensus 349 IWD~R~l~~K~s--------p~lst~~HrrsV~sAyFSPs~-gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 349 IWDLRQLRGKAS--------PFLSTLPHRRSVNSAYFSPSG-GT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred eeehhhhcCCCC--------cceecccccceeeeeEEcCCC-Cc-eEeeccCCceEEeecccccccCCccceeeccCccc
Confidence 999987643321 355666899999999999997 44 899999999999998 3455666776643
Q ss_pred ---ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEEE-eCCCcEE
Q 035621 224 ---AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSA-AEDGSVY 298 (387)
Q Consensus 224 ---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~-~~dg~i~ 298 (387)
......|.|+..++++|..-..|-++|-..+ +.+.++.......|.++ .|+|-+..+++| +..|.|+
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~--------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG--------QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCC--------EEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 3457799999999999999889999998763 22333222223344443 789988855555 5677888
Q ss_pred EEECC
Q 035621 299 IWEIE 303 (387)
Q Consensus 299 iwd~~ 303 (387)
||--+
T Consensus 491 vft~k 495 (498)
T KOG4328|consen 491 VFTNK 495 (498)
T ss_pred EEecC
Confidence 88644
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.3e-26 Score=200.03 Aligned_cols=242 Identities=17% Similarity=0.234 Sum_probs=202.7
Q ss_pred CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621 36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 113 (387)
.|....+.++|.|++. .+.+++.||.|++|+.... +....+. +...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 5888889999999654 4556999999999998666 5555555 66777777764 4589999999999999999
Q ss_pred CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC
Q 035621 114 KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN 193 (387)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (387)
+++.-..+....-++++++|+.+|++++.|+.|-.|++.++ ......+.+.+|.++|.++.++|.+
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~------------~D~s~~~~lrgh~apVl~l~~~p~~-- 150 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL------------DDSSQEKVLRGHDAPVLQLSYDPKG-- 150 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec------------cccchheeecccCCceeeeeEcCCC--
Confidence 88766556666788999999999999999999999999998 5666778899999999999999985
Q ss_pred ceEEEEeCCCcEEEEeCCCCcEEEEEe---------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621 194 SIIISCSMDCTCKFWRLLNGTHLSTVT---------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE 264 (387)
Q Consensus 194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 264 (387)
++|++.+-||.|++||+.++.+..++. ....+..++|+|++..+++.+.|+.|.+|+...........
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--- 227 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--- 227 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec---
Confidence 999999999999999999988776664 13457789999999999999999999999998854332221
Q ss_pred eEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 265 LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 265 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...+...+..++|+|+|+|||+++.||.|.|||+++
T Consensus 228 ----~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 ----DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ----ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 123444599999999999999999999999999996
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=8.6e-27 Score=193.22 Aligned_cols=258 Identities=19% Similarity=0.286 Sum_probs=210.4
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---CcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS---TPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~---~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
|..-|.+++.+... .+++ .+..|.|+|||+... .++..+. ...-+..+.+.|||+.|++|+.-.++.||
T Consensus 418 HGEvVcAvtIS~~t----rhVy-TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 418 HGEVVCAVTISNPT----RHVY-TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred cCcEEEEEEecCCc----ceeE-ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 66667777777622 2333 356789999999543 2333333 34568999999999999999999999999
Q ss_pred eCCCCcee--EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 111 SVPKGDIL--RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 111 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
|+....+. ..+....-....++.+||.+..++++.||.|.|||+ .+...++.+++|.+.+.||.++
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL------------hnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL------------HNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc------------ccceeeecccCCCCCceeEEec
Confidence 99765432 233333345678899999999999999999999999 6788899999999999999999
Q ss_pred eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621 189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268 (387)
Q Consensus 189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 268 (387)
+++ ..|-||+-|.+||.||++++..+....+.+.|.++.++|.+.++++|-.++.+.+.......+. .
T Consensus 561 ~dG--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky----------q 628 (705)
T KOG0639|consen 561 KDG--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY----------Q 628 (705)
T ss_pred CCC--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce----------e
Confidence 885 8999999999999999999999999999999999999999999999999999988877653322 2
Q ss_pred cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
+.-|...|.++.|.+.|+++++.+.|..+..|...-|..+...+.. .+|.+..++
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~--SsVlsCDIS 683 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDIS 683 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc--Ccceeeeec
Confidence 2358999999999999999999999999999999999888777654 356555443
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=6.6e-26 Score=187.72 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=216.1
Q ss_pred CcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Cccc-ccCCCCCeeeEEec
Q 035621 18 GPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLH-NIPVPEPVAPLATT 92 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~-~~~~~~~v~~~~~~ 92 (387)
..+++||....+....+..|..+ +.++.|+....+ ..++.+.|..+++|.-... +... .......-.|++..
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~l---vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFL---VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceE---EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence 47999999877666556544433 888899875422 2234788999999975332 1111 11122345566666
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
....++++|+..+.|+|||++...+.+.+++|+..|+++.++-...+|++++..|.|.+..+ .+....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~------------~t~~~t 156 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT------------KTKQKT 156 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec------------ccCccc
Confidence 66689999999999999999977777888999999999999999999999999999999988 333333
Q ss_pred Eeeecc-CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCC-CeEEEEccCCcEEE
Q 035621 173 QKFVAH-NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTE-TDFFAAGSDGLIYK 248 (387)
Q Consensus 173 ~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 248 (387)
..+... ...|.-+.+++.. ..+|.+++.+|.|.+||+....++..+. |..+...++|+|.. ..|++.+.|..|++
T Consensus 157 t~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred cceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 444333 3456688898886 5788899999999999999888877765 78899999999976 56677799999999
Q ss_pred EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc-cEEEEeecccCCCceeEEEEec
Q 035621 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR-QVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
||...... ...+ ....+...++|+++|.+|+.|...|.|..||++.. .++..+..|. ..|++++|-+.
T Consensus 236 yD~~s~~s--------~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~-~sVt~vafq~s 304 (673)
T KOG4378|consen 236 YDIRSQAS--------TDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD-ASVTRVAFQPS 304 (673)
T ss_pred eecccccc--------ccee--eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc-cceeEEEeeec
Confidence 99986321 1112 34567899999999999999999999999999874 5677776664 48999999876
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-26 Score=193.80 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=217.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccc-----------------------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS----------------------- 58 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------------- 58 (387)
++..|.|..|++|+.||+|+||.+.||.++++++ ..+.|.+++|+|...+..-..+
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 4567899999999999999999999999999887 4557999999985432211111
Q ss_pred ---c----CCCCCeEEEEEccCCC-----cccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccC
Q 035621 59 ---P----TTGSGSVHLYNLWSST-----PLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 59 ---~----~~~d~~v~vw~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~ 123 (387)
+ ...++.+..|.-.... ....+.+..+|..+.|+..|.||++...+ ..|.|+++.......-|+.
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k 564 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK 564 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh
Confidence 0 1123445566543211 12345578899999999999999987654 4799999987766666766
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
..+.|.++.|+|...+|++++. ..|++||+ .....++.+......|..++.+|.+ ..|+.++.|+
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL------------~kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~ 629 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDL------------SKQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDK 629 (733)
T ss_pred cCCceeEEEecCCCceEEEEec-cceEEEeh------------hHHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCC
Confidence 6788999999999999988876 68999999 4556666676677789999999986 7788999999
Q ss_pred cEEEEeCCCC-cEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccccc----EE
Q 035621 204 TCKFWRLLNG-THLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV----VV 277 (387)
Q Consensus 204 ~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----v~ 277 (387)
.+..||+.-. ++.+++. |...+++++|++.-.++++|+.||.+.++--.-...............+.+|... |.
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 9999999755 4455555 6789999999999999999999999999865543322222223344455677765 99
Q ss_pred EEEEecCCCEEEEEeCCCcEEEE
Q 035621 278 SVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
.+.|+|...+|++++.||+|++|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 99999999999999999999998
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=178.56 Aligned_cols=270 Identities=11% Similarity=0.174 Sum_probs=217.8
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
++++.+.+|...|+.++......+.+ +++.|.+.++|.++++.++..+. |.+.|+++.|++.+.++++++.|++-
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~g----tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICG----TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCccee----ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 45677889999999998876444444 48999999999999999998887 67899999999999999999999999
Q ss_pred EEEeC------CCC----------------------------------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621 108 YAISV------PKG----------------------------------DILRSFSAHDKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 108 ~i~d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
+||.. ... .++..+.+|.+.|.+..|-..|+.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 99972 110 14566788999999999999999999999999
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCce
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT-FPCAI 225 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v 225 (387)
+..+||+ +++..+..+.+|....+.++-+|.. +++++.+.|.+.++||++.. ..+..|+ |...|
T Consensus 295 TAnlwDV------------Etge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 295 TANLWDV------------ETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred cceeeee------------ccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9999999 7888999999999999999888875 89999999999999999843 3344555 77899
Q ss_pred eEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
+++.|..+. .+++|+.|.+|++||+++.. .++..+ ....+++.++.+..+..|+.--.+..|++||+...
T Consensus 361 TS~vF~~dd-~vVSgSDDrTvKvWdLrNMR-------splATI--RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 361 TSVVFNTDD-RVVSGSDDRTVKVWDLRNMR-------SPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eEEEEecCC-ceeecCCCceEEEeeecccc-------Ccceee--ecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 999998764 68899999999999999732 222222 24678999999988889998888899999999866
Q ss_pred cEEEEeec---ccCCCceeEEEEe
Q 035621 306 QVVMVLKN---ELAGSISEMVIAT 326 (387)
Q Consensus 306 ~~~~~~~~---~~~~~v~~~~~~~ 326 (387)
++-+.-.. .+...|++.+++.
T Consensus 431 RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 431 RLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred ccccCCcccccccceeeeeeeccc
Confidence 54432211 1223555555543
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-24 Score=186.08 Aligned_cols=276 Identities=21% Similarity=0.247 Sum_probs=222.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
||||.+.+.||.+-.+|.|.||++..+- ....+.++.. .|.+++|.+... |++.+.+|.|.-||+.++++...
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-----LFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-----LFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-----EEeecCCceEEEEecccCceeEE
Confidence 6889999999999999999999998653 3445555544 599999996443 33478999999999999999888
Q ss_pred cCC-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 80 IPV-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 80 ~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
+.. .+.|.+++.+|.+..++.|+.||.+..++...++... .+...++.|.++.|+|++..++.|+.||.|++||...
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 874 5789999999999999999999988888887776543 3445568999999999999999999999999999943
Q ss_pred ccccCCCCCCCCccceEe-------eec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeE
Q 035621 157 LVDEHTDDKNPDDLMLQK-------FVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMG 227 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-------~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~ 227 (387)
+..+.. +.. ...-|+++.+..+ ..+++|..-|+|.+||...+..++.+. |...|.+
T Consensus 186 ------------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 186 ------------GQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred ------------CceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 222221 111 2234677777755 689999999999999999999999887 7899999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
++..++++++++++.|+.|..|........ .........|...|.+++..++ .+++|+.|..+.+-....
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc-----eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 999999999999999999999988775432 1222223468889999999877 899999999988866554
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.4e-25 Score=191.35 Aligned_cols=310 Identities=13% Similarity=0.147 Sum_probs=229.7
Q ss_pred CcEEEeeCCCCcEEEEeCCCCc---------------------ee----------EeccCCCCCceeEEEcCccceeeec
Q 035621 8 NEVILTSSPEGPITAYNPSSGA---------------------IL----------AHFSGSRSPRRGLTFAGKPFIAASH 56 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~---------------------~~----------~~~~~~~~~v~~~~~~~~~~~~~~~ 56 (387)
.-+||+++.|..|+||.+.-+. .. ..+.||.+.|.++.|+|.. ..
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~----~~ 281 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG----LD 281 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch----hh
Confidence 3589999999999999873221 11 1224899999999999954 44
Q ss_pred cccCCCCCeEEEEEccCCCcc--cccC-----C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCC
Q 035621 57 ISPTTGSGSVHLYNLWSSTPL--HNIP-----V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHD 125 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~~~~--~~~~-----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~ 125 (387)
+.+++.|.++.+|...+..-+ .... + ........|+|+++.+++-+..|..++|..++. .+...+.+|.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 556899999999987654211 1111 1 235788999999999999999999999983332 2334567999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----------------------cc-c----------------------
Q 035621 126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQL----------------------VD-E---------------------- 160 (387)
Q Consensus 126 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------~~-~---------------------- 160 (387)
..|+.++|+|.|.+|++.+.|.+-|+|--... .+ .
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 99999999999999999999988877644200 00 0
Q ss_pred ---------------------------------CCCCCC--------------------------------CCccceEee
Q 035621 161 ---------------------------------HTDDKN--------------------------------PDDLMLQKF 175 (387)
Q Consensus 161 ---------------------------------~~~~~~--------------------------------~~~~~~~~~ 175 (387)
.....+ .....++.+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 000000 000123345
Q ss_pred eccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621 176 VAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKG 249 (387)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 249 (387)
.+|...|.+++.+|++ ++++++.... .|++|+..+......+. |.-.|+.++|+|||++|++.+.|..+.+|
T Consensus 522 YGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred ccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 6888999999999885 9999988653 58999999888877776 77899999999999999999999999999
Q ss_pred eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc--cEEEE-eecccCCCceeEEEEe
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR--QVVMV-LKNELAGSISEMVIAT 326 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~v~~~~~~~ 326 (387)
.......... . ....+.|..-|+++.|+|++.+|+|++.|.+|++|..... +.+.. -...+..+||.+.+.+
T Consensus 600 ~~~~~~~~e~----~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 600 EVQEDIKDEF----R-FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eeecccchhh----h-hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 9855322111 1 1224689999999999999999999999999999999888 55554 2334566888887766
Q ss_pred cC
Q 035621 327 GI 328 (387)
Q Consensus 327 ~~ 328 (387)
-.
T Consensus 675 ~~ 676 (764)
T KOG1063|consen 675 VD 676 (764)
T ss_pred cc
Confidence 43
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-27 Score=205.97 Aligned_cols=257 Identities=16% Similarity=0.252 Sum_probs=218.3
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCC
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPE 84 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~ 84 (387)
|-+.+++....+-.+++||.+ .+..|...+.++..-. ....+++|+.|..+-+|.+.....+..+. |..
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred Ccccccceeeeeeccccccch------hhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheeeccCC
Confidence 444556666666778888863 3445677777776533 23345568899999999998877777754 778
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 164 (387)
+|.++.|+++..+|++|..+|+|++||++.++.++++.+|...+.++.|+|-+.+.++|+.|+.+++||+
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~---------- 141 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI---------- 141 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
....+.+.+.+|...+..+.|+|++ .+++.++.|.+++|||+..|+.+..|. |...+..+.|+|..-.++.|+.|
T Consensus 142 --Rk~Gc~~~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 142 --RKKGCSHTYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred --hccCceeeecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC
Confidence 5567888999999999999999985 999999999999999999999999998 88999999999999999999999
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
+.+++||+++. ++..........|.+.+|+|+++.+++|..+.
T Consensus 218 ~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 218 RTVRFWDLETF---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeecccee---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999962 22222234467899999999999999987654
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.9e-26 Score=184.95 Aligned_cols=213 Identities=18% Similarity=0.169 Sum_probs=169.9
Q ss_pred ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCc----------eeEEccCCCCCeEEEEEcCCC-CEEEEEeCC
Q 035621 79 NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGD----------ILRSFSAHDKPVSCLKISPDG-SLLISGGDD 146 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 146 (387)
.+.|++.|+.+.+.|+. ..+++++..+.+.|||..... +-..+.+|...=.+++|++.. -.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 35578889999999965 556677788999999984321 223677898877889999954 489999999
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--CcEEEEEe-cCC
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--GTHLSTVT-FPC 223 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~ 223 (387)
+.|++||+...... .....+...+.+|...|..++|++.. ..+|++++.|+.+.|||+++ .++..... |..
T Consensus 200 ~~i~lwdi~~~~~~-----~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 200 HTICLWDINAESKE-----DKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred CcEEEEeccccccC-----CccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 99999999543221 13355677889999999999999986 68999999999999999995 44444444 789
Q ss_pred ceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEE
Q 035621 224 AIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWE 301 (387)
Q Consensus 224 ~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 301 (387)
.++|++|+|-+ ..||+|+.|++|.+||+++- ......+.+|...|.++.|+|.. ..||+++.|+.+.|||
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 99999999965 56777888999999999983 33444556899999999999975 5888999999999999
Q ss_pred CCCc
Q 035621 302 IEKR 305 (387)
Q Consensus 302 ~~~~ 305 (387)
+..-
T Consensus 346 ls~i 349 (422)
T KOG0264|consen 346 LSRI 349 (422)
T ss_pred cccc
Confidence 9763
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.9e-27 Score=205.09 Aligned_cols=220 Identities=17% Similarity=0.323 Sum_probs=198.1
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP 85 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~ 85 (387)
.++.+++|+.|-.+-+|.+.....+..|.+|..+|.++.|+....+ ++.|+.+|+|++||++.++.++++. |...
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L----laagsasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL----LAAGSASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhh----hcccccCCceeeeehhhhhhhhhhhccccC
Confidence 4678999999999999999777777789999999999999995444 4449999999999999998888776 6678
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+..+.|+|-+.+.+.|+.|+.+++||.+...+.+.+++|...+.+++|+|+|++++++++|..+++||+
T Consensus 115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~----------- 183 (825)
T KOG0267|consen 115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL----------- 183 (825)
T ss_pred cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc-----------
Confidence 999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCC
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDG 244 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 244 (387)
..++....|..|.+.+.++.|+|.. -++++|+.|+++++||+++.+.+.... ....|.+.+|+|++..+++|....
T Consensus 184 -~agk~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 184 -TAGKLSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -cccccccccccccccccccccCchh--hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6788889999999999999999885 889999999999999999888777765 467899999999999998887643
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=201.93 Aligned_cols=232 Identities=18% Similarity=0.312 Sum_probs=188.0
Q ss_pred CCcEEEeeCCCCcEEEEeCCC---CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-
Q 035621 7 CNEVILTSSPEGPITAYNPSS---GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV- 82 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~- 82 (387)
+.++|||++..|.|.+||+.. .+.+..|..|...++++.|++. ....+++|+.||.|++||++..+...++..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeeccccccccccc
Confidence 467999999999999999976 5667788999999999999983 345566799999999999998887777664
Q ss_pred CCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 83 PEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 83 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.+.|..+.|+| .+.+++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+|++|+.|+.|+|||...
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~---- 251 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD---- 251 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC----
Confidence 47899999999 6788999999999999999865 55677889999999999999999999999999999999932
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcE-EEEEe-cCCceeEEEeCC-CCC
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTH-LSTVT-FPCAIMGLALDP-TET 235 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~-~~~ 235 (387)
........+ ....++.++.|.|.. ...|++++. |-.|+|||++..-. ..++. |...++.++|.. |..
T Consensus 252 ------~~~~~~~tI-nTiapv~rVkWRP~~-~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 252 ------SRAKPKHTI-NTIAPVGRVKWRPAR-SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred ------CCccceeEE-eecceeeeeeeccCc-cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 122222222 235789999999986 467888765 78899999987653 34444 778888999976 446
Q ss_pred eEEEEccCCcEEEEeccc
Q 035621 236 DFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~ 253 (387)
.+.+++.||.+..-.++.
T Consensus 324 ~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeEeecCccHHHHhhhhc
Confidence 788888899887665554
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=187.14 Aligned_cols=231 Identities=17% Similarity=0.326 Sum_probs=193.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-------- 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-------- 73 (387)
|+-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-.+|+++.|+.+ .+++++++.||.|.+|.+.+
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d----gs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD----GSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC----CcEEEecCCCccEEEEEEEeecccccCC
Confidence 456789999999989999999999999999999999999999999994 45666799999999998732
Q ss_pred -CCcccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621 74 -STPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149 (387)
Q Consensus 74 -~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 149 (387)
.++.+.+. |.-+|+++...+. ..++++++.|.++++||+..+.++.++. ....+.+++.+|-++.++.|+.+|.|
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceE
Confidence 23444444 5568999888765 4689999999999999999999988875 46789999999999999999999999
Q ss_pred EEEeCCcccccCC----CCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 035621 150 ATVPIFQLVDEHT----DDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP 222 (387)
Q Consensus 150 ~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 222 (387)
.+.++.+....+. .........+..+.+|.+ .|+|++++-++ .+|++|+.||.+.|||+.+.++++++. ..
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9998865442221 222345567778889988 99999999885 999999999999999999999999998 78
Q ss_pred CceeEEEeCCCCCeEEE
Q 035621 223 CAIMGLALDPTETDFFA 239 (387)
Q Consensus 223 ~~v~~~~~~~~~~~l~~ 239 (387)
++|+.+.+.|-.+-.+.
T Consensus 320 gpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIIL 336 (476)
T ss_pred cccceeEeeccccceec
Confidence 89999999775444333
No 136
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=177.91 Aligned_cols=280 Identities=19% Similarity=0.293 Sum_probs=208.0
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CC-C
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VP-E 84 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~-~ 84 (387)
..+|++-..|.|++||..+++.+..+++++..++.+.|.... ....+.+++.||+|++||++.......+. ++ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 468888899999999999999999999999999999998732 22345568999999999998876665554 22 4
Q ss_pred CeeeEEeccCCCEEEEec----CCCcEEEEeCCCCce-eEEc-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcc
Q 035621 85 PVAPLATTADGSYLFTGG----LSGNVYAISVPKGDI-LRSF-SAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
+..+++....++.+++|. .+-.|.+||++..+. +..+ ..|...|+++.|+| +.++|++|+.||.|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 677888877888888885 356899999998766 5544 57999999999999 6679999999999999999442
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------c
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------A 224 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~ 224 (387)
.....+.....|...|.++.|...+. ..+.+-+..++..+|+++.+.+...+..+. .
T Consensus 199 ---------~EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 199 ---------NEEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred ---------cchhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 23334555556888899999987752 458888889999999999988665554221 1
Q ss_pred eeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 225 IMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
+...-...+...++.++. -+...++-+........ ...+..+..+|..-|.++.|...+.++.|||+||.+.+|..
T Consensus 269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccCCCcceEEEeccccCceeEEEeeecccccc--cCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 222222234455555544 66666665553221111 12333334468888999999988999999999999999996
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-24 Score=168.73 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=194.2
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc----C-CCCCeeeEEecc--CCCEEEEecCCCcE
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI----P-VPEPVAPLATTA--DGSYLFTGGLSGNV 107 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~----~-~~~~v~~~~~~~--~~~~l~~~~~dg~i 107 (387)
.+|.+-|+++.|.+ .+.++++++.|++++|||.++..-.... + |.+.|..+.|.+ -|+.+|+++.|+++
T Consensus 10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 46888899999998 5566777999999999997554332222 2 778899999976 58999999999999
Q ss_pred EEEeCCCC---------ceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621 108 YAISVPKG---------DILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176 (387)
Q Consensus 108 ~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 176 (387)
.||.-... ....++......|+.+.|.| -|-.|++++.||.++||+..+..+.. ......++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs------~W~Lq~Ei~ 159 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS------QWTLQHEIQ 159 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc------cchhhhhhh
Confidence 99975211 23445666788999999999 46789999999999999985543332 122222222
Q ss_pred -------ccCCCeEEEEEeeCCC-CceEEEEeCC-----CcEEEEeCCCCc-E---EEEEe-cCCceeEEEeCCCC----
Q 035621 177 -------AHNDSVTAITCCIGSF-NSIIISCSMD-----CTCKFWRLLNGT-H---LSTVT-FPCAIMGLALDPTE---- 234 (387)
Q Consensus 177 -------~~~~~i~~~~~~~~~~-~~~l~s~~~d-----~~i~iwd~~~~~-~---~~~~~-~~~~v~~~~~~~~~---- 234 (387)
.+..+..|+.|+|..- ..+|+.|+.+ +.++||...... . +.++. +..+|+.++|.|+-
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 4667788999987642 3567777765 478899876543 2 22232 78899999999963
Q ss_pred CeEEEEccCCcEEEEeccccc-----------cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 235 TDFFAAGSDGLIYKGLLKYQS-----------RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
..|++++.|| |+||.+.... .....-..+....+..|.+.|+.+.|+-.|..|++.|.||.||+|...
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 5799999999 9999998421 011111223444567899999999999999999999999999999854
Q ss_pred C---ccEEEEeec
Q 035621 304 K---RQVVMVLKN 313 (387)
Q Consensus 304 ~---~~~~~~~~~ 313 (387)
- .++...++.
T Consensus 319 y~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 319 YNNLWKCTSVLKA 331 (361)
T ss_pred hhhhheeeeEEec
Confidence 3 344545543
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.9e-24 Score=180.95 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=185.5
Q ss_pred ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|++... ++++..++.+++||+.+++.+..+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l---~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKIL---YIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEE---EEEcCCCCeEEEEECCCCeEEeEe
Confidence 5789999876 6677889999999999988887765544 5678899865432 223567899999999988877777
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQLV 158 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 158 (387)
.....+.+++|+|++++++++..++ .+.+||.++++....+.. ...+.+++|+|++++++++ ..++.|++||+.
T Consensus 112 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~--- 187 (300)
T TIGR03866 112 PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVA--- 187 (300)
T ss_pred eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcC---
Confidence 6666678999999999999988765 567789988877655432 3356789999999988655 468999999994
Q ss_pred ccCCCCCCCCccceEeeeccC-----C--CeEEEEEeeCCCCce-EEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621 159 DEHTDDKNPDDLMLQKFVAHN-----D--SVTAITCCIGSFNSI-IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 230 (387)
....+..+..+. . ....++++|++ ++ +++.+.++.+.+||+++++....+.....+.+++|
T Consensus 188 ---------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 188 ---------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDG--KTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred ---------cceeeeeeeecccccccccCCccceEECCCC--CEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence 333333322111 1 22357778775 55 44445677899999999888877766778999999
Q ss_pred CCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 231 DPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 231 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
+|++++|+++. .+|.|.+||+.... .+..+ . .....+.++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~--------~~~~~-~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALK--------VIKSI-K-VGRLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCc--------EEEEE-E-cccccceeEeCC
Confidence 99999998874 58999999999832 22222 1 234557777764
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=9.6e-25 Score=179.02 Aligned_cols=282 Identities=16% Similarity=0.171 Sum_probs=210.6
Q ss_pred EeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----ccccCCCCCeeeEEecc-CCC
Q 035621 23 YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-----LHNIPVPEPVAPLATTA-DGS 96 (387)
Q Consensus 23 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~ 96 (387)
+|+.+-.....++-+.++|++++|+|... ...+++|...|+|-+||+.+.++ ..-..|..+|.++.|+| +-.
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence 44444555566677889999999999432 13445599999999999953322 22234778999999999 456
Q ss_pred EEEEecCCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 97 YLFTGGLSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 97 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
.+++.+.||+|++-|++.+.. +.........+.++.|+.+...++.+..=|...+||++. .+.....
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~-----------~~s~~~~ 317 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT-----------DGSEYEN 317 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec-----------CCccchh
Confidence 788999999999999987643 333333456788899998888888888878999999953 3334555
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-----HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKG 249 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 249 (387)
+.-|...|++++++|-. ..+|+|++.|++++|||++... .+..+.|...|.+..|+|.+..|++.+.|..|++|
T Consensus 318 ~~lh~kKI~sv~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhhhhcccceeecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 66788899999999986 6899999999999999998643 25566789999999999999889999999999999
Q ss_pred eccccccccccccceeEeecc--cccc--cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621 250 LLKYQSRQQMHKGQELVTLAN--RHDG--VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~--~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 322 (387)
|...-... ......+.. .+.. ......|.|+..++++|-.-..|-|+|-..++.+..+.......|.++
T Consensus 397 dss~~sa~----~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~v 469 (498)
T KOG4328|consen 397 DSSCISAK----DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSV 469 (498)
T ss_pred eccccccc----CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccc
Confidence 98521111 111111110 1112 245668999999999999999999999999998988776655445444
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-23 Score=183.82 Aligned_cols=357 Identities=19% Similarity=0.208 Sum_probs=237.0
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCC-cee----EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSG-AIL----AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~-~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
|=|..++++..++.+.||+..++ +.. ..++.....|+++. +|... .+.++.|+.+|.+++||+.+++.+.++
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TY--LNKIvvGs~~G~lql~Nvrt~K~v~~f 198 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTY--LNKIVVGSSQGRLQLWNVRTGKVVYTF 198 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhh--eeeEEEeecCCcEEEEEeccCcEEEEe
Confidence 44778888999999999998874 211 11222222266664 44322 245666899999999999999999999
Q ss_pred C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCccc
Q 035621 81 P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 81 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 158 (387)
+ +...|+++.-+|-=..++.|..+|+|.+++++.++.+.+++...+.|++++|..||+ .+++|+..|.+.+||+.+..
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 8 457899999999888999999999999999999999999985569999999999987 56777778999999994321
Q ss_pred cc------CCCCC----------------CCCccceEeee-------------ccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 159 DE------HTDDK----------------NPDDLMLQKFV-------------AHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 159 ~~------~~~~~----------------~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
.. ..... ..+...+..+. +|..|..++.|.-.. +..+.+++.|+
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Dr 357 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDR 357 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC-cEEEEecccCc
Confidence 00 00000 00000011111 244444444443221 34455555555
Q ss_pred cEEEEeCCCC-------c----------------------------------------------------------E-EE
Q 035621 204 TCKFWRLLNG-------T----------------------------------------------------------H-LS 217 (387)
Q Consensus 204 ~i~iwd~~~~-------~----------------------------------------------------------~-~~ 217 (387)
+++.+++... + . ..
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 4444433100 0 0 01
Q ss_pred EEecC------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 218 TVTFP------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 218 ~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
.+.+. ..+++++.++.|++.+.|...|.|.+|+++++-....+- -...|.++|+.++...-++.++++
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~------~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG------DSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc------cCccccCceeEEEecCCCceEEEc
Confidence 11111 367899999999999999999999999999843221110 024799999999999999999999
Q ss_pred eCCCcEEEEECCCccEEEEeecccCCCceeE-------EEEecCCCce-eeEEEecCC-------CCCCCCCcceeeecc
Q 035621 292 AEDGSVYIWEIEKRQVVMVLKNELAGSISEM-------VIATGIGGSR-GCGVVKTGK-------AGNDSGGGVFEMYGE 356 (387)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~ 356 (387)
+.+|.+++||..+..++..+.-. .+++++ .++...++.. .+.+..+.. .+++.....+..-++
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred cCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 99999999999999888877643 234444 2233334432 333333211 222333344555667
Q ss_pred ceeccccccchhhhceee
Q 035621 357 KLLDLSIKNTIELENVMT 374 (387)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (387)
-.+..+.|.++++|+..+
T Consensus 590 WlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPT 607 (910)
T ss_pred EEEEeecCCcEEEEeccC
Confidence 788888899999999865
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=173.66 Aligned_cols=225 Identities=16% Similarity=0.211 Sum_probs=177.8
Q ss_pred CCcEEEeeCCCCcEEEEeCC----------------CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621 7 CNEVILTSSPEGPITAYNPS----------------SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN 70 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~ 70 (387)
+..+.|+=+..|.|+|||+. ..+++.++.+|...-.++.|+|- ....+++|..-+.|++|.
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~g~LlsGDc~~~I~lw~ 240 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KTGRLLSGDCVKGIHLWE 240 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---cccccccCccccceEeee
Confidence 34566777889999999973 23567788899999999999992 344577788889999999
Q ss_pred ccCCCcc----cccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 71 LWSSTPL----HNIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 71 ~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
..++.-. -...|...|..++|+|. ...|++|+.||+|+|||++.+ .++. .++|.+.|+.|.|+.+..+|++
T Consensus 241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeee
Confidence 8876432 22337789999999995 468899999999999999988 3333 3789999999999998889999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--------
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-------- 214 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------- 214 (387)
|+.||+++|||+++. ....++..++.|..+|+++.|+|.. ...|++++.|..|.+||+..-.
T Consensus 320 G~DdGt~~iwDLR~~---------~~~~pVA~fk~Hk~pItsieW~p~e-~s~iaasg~D~QitiWDlsvE~D~ee~~~~ 389 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQF---------KSGQPVATFKYHKAPITSIEWHPHE-DSVIAASGEDNQITIWDLSVEADEEEIDQE 389 (440)
T ss_pred cCCCceEEEEEhhhc---------cCCCcceeEEeccCCeeEEEecccc-CceEEeccCCCcEEEEEeeccCChhhhccc
Confidence 999999999999775 4557889999999999999999986 5788888899999999985321
Q ss_pred -----------EEEEEecCCceeEEEeCCCC-CeEEEEccCCc
Q 035621 215 -----------HLSTVTFPCAIMGLALDPTE-TDFFAAGSDGL 245 (387)
Q Consensus 215 -----------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 245 (387)
++.....+..+..+.|+++- .++++.+.||.
T Consensus 390 a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 390 AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 22222235568889999875 45555566664
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-23 Score=179.45 Aligned_cols=306 Identities=12% Similarity=0.146 Sum_probs=216.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
|+|++ +.+|.+.+.+|.|.-||+.+++....+....++|++++.+|.. ..++.|+.||.+..++...++......
T Consensus 75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~----~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN----TILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc----ceEEeecCCceEEEEecCCceEEEEee
Confidence 57884 4466777788999999999999999999999999999999944 445558999988888877665544332
Q ss_pred ---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-------C-CCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621 82 ---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-------A-HDKPVSCLKISPDGSLLISGGDDGVIA 150 (387)
Q Consensus 82 ---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 150 (387)
..+.+.+++|+|++..++.|+.||.|++||...+..++... . ...-|.++.|-.++ .+++|...|+|+
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 34789999999999999999999999999999887766221 1 22347788887554 699999999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---------------
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--------------- 215 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------- 215 (387)
+||. ..+..++.+..|...|.+++..++. +++++++.|+.|.-|...+...
T Consensus 229 FWd~------------~~gTLiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 229 FWDS------------IFGTLIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred EEcc------------cCcchhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 9998 5666777777888888888877664 6777777777766655432210
Q ss_pred -------------------------------------------------------------------------------E
Q 035621 216 -------------------------------------------------------------------------------L 216 (387)
Q Consensus 216 -------------------------------------------------------------------------------~ 216 (387)
+
T Consensus 295 rs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L 374 (691)
T KOG2048|consen 295 RSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL 374 (691)
T ss_pred eeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence 0
Q ss_pred EEE--ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-----------------------------------
Q 035621 217 STV--TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM----------------------------------- 259 (387)
Q Consensus 217 ~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------------- 259 (387)
..+ +.+..|.+.+.+|+|+.|+.+.-. ..++|.++.......
T Consensus 375 lkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 375 LKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 000 122357889999999999888621 233333332110000
Q ss_pred -------cccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCC
Q 035621 260 -------HKGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIG 329 (387)
Q Consensus 260 -------~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 329 (387)
...+++... ..+....|..+..+|+|++||+.+.+|.|.+|++++++.-.... ..+..+|.++|.+...
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~ 530 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVR 530 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeecccccc
Confidence 000011111 11244578999999999999999999999999999887654442 2335788777764433
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=179.73 Aligned_cols=234 Identities=16% Similarity=0.192 Sum_probs=182.7
Q ss_pred CCcEEEeeCCCCcEEEEeCCCC---cee------------------EeccCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621 7 CNEVILTSSPEGPITAYNPSSG---AIL------------------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 65 (387)
-|+++|.|+.|..|.|||+.=. .+. ..-.+|+..|.++.|+.. ....|++|+.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~---~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN---FRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc---cceeEEecCCCce
Confidence 3689999999999999998411 000 112368888999999873 3445667999999
Q ss_pred EEEEEccCCCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEE
Q 035621 66 VHLYNLWSSTPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLIS 142 (387)
Q Consensus 66 v~vw~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 142 (387)
|++||+.++++...+. |..+|.++.|+| ...+|++|+.|+++.+.|.+........-...+.|-.++|.|.. ..+++
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 9999999999999999 668999999999 46789999999999999998532222111246789999999954 57888
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF- 221 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 221 (387)
+..||.++-+|+|+ .+.++.++++|.++|.++++++.. ..++++++.|+.+++|++....+.....+
T Consensus 348 ~tddG~v~~~D~R~-----------~~~~vwt~~AHd~~ISgl~~n~~~-p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 348 STDDGTVYYFDIRN-----------PGKPVWTLKAHDDEISGLSVNIQT-PGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred ecCCceEEeeecCC-----------CCCceeEEEeccCCcceEEecCCC-CcceeeccccceEEEEeecCCCCccccccc
Confidence 88999999999974 447899999999999999998775 57999999999999999876544322221
Q ss_pred --CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccc
Q 035621 222 --PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 222 --~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 255 (387)
-+...|+++.|+-. .++.|+..+.+++||+.+..
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 13367778888765 46667778889999998743
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=5.2e-23 Score=170.96 Aligned_cols=272 Identities=12% Similarity=0.139 Sum_probs=214.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...++.++. |+.|..|..|| ..-+.++..+
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-----GgKDRki~~Wd-~~y~k~r~~e 324 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-----GGKDRKIILWD-DNYRKLRETE 324 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-----cCccceEEecc-cccccccccc
Confidence 57888886 68899999999999988887777779999999999988665543 89999999999 4555555555
Q ss_pred CC---CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 VP---EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
.+ +++..++=...+ |++|...+.|..=.++++-.+ ...+|......++.+|+.+.+++++.|+.+++|+-.
T Consensus 325 lPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--- 398 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--- 398 (626)
T ss_pred CchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEccCC---
Confidence 44 456666543333 778877777776676665443 344788899999999999999999999999999731
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEE
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFF 238 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 238 (387)
.+.-...-..+..++.|+|.+ .++.|...|...+.|.++...+.......+++++.|+|+|.+||
T Consensus 399 ------------k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 399 ------------KLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ------------ceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence 111122345688899999983 89999999999999999977766666788999999999999999
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
+|+.|+.|++|.+.... ......-..+..+|+.+.||+|+++|.+-+.|-.|..|....-+.+
T Consensus 464 vgs~d~~iyiy~Vs~~g-------~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANG-------RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred EecCCCeEEEEEECCCC-------cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 99999999999987643 2333333345589999999999999999999999999954443333
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-23 Score=163.66 Aligned_cols=271 Identities=14% Similarity=0.136 Sum_probs=203.9
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------------cccccC----CCCCeeeEEecc-CCCE
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------------PLHNIP----VPEPVAPLATTA-DGSY 97 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------------~~~~~~----~~~~v~~~~~~~-~~~~ 97 (387)
..|.+.|+++...+. ...++++|+.||.|.+||++... ++-..+ |.-.|..+.|-| |...
T Consensus 40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 458899999999882 33455669999999999997643 111111 345788999999 6678
Q ss_pred EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 98 LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 98 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+.+++.|.++++||..+.+....|+ ..+.|.+-+++|- ..++++|..|-.|++-|+ ..+...+.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi------------~SGs~sH~ 183 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI------------ASGSFSHT 183 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec------------cCCcceee
Confidence 8889999999999999998888876 4677888888883 347888889999999999 78888999
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe---------------cCCceeEEEeCCCCCeEE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT---------------FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l~ 238 (387)
+.+|.+.|.++.|+|.. .-.|++|+.||.|++||++.. .++..+. |.+.++.++|..++.+++
T Consensus 184 LsGHr~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eccccCceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 99999999999999986 578999999999999999865 3333332 446789999999999999
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
+.+.|..+++|+...+.......++...... .|. .+. +. +-+...++---.++.+.++++-+++.++.+..| -..
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~ 337 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKR 337 (397)
T ss_pred hccCccceEEeecccCccccccccccccccc-ccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc-cce
Confidence 9999999999999886544333222221111 111 111 22 334445555556689999999999999999988 336
Q ss_pred ceeEEEEec
Q 035621 319 ISEMVIATG 327 (387)
Q Consensus 319 v~~~~~~~~ 327 (387)
+.+.++-+.
T Consensus 338 i~c~~~~~~ 346 (397)
T KOG4283|consen 338 INCAAYRPD 346 (397)
T ss_pred eeEEeecCc
Confidence 666655443
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7e-24 Score=166.45 Aligned_cols=284 Identities=13% Similarity=0.135 Sum_probs=205.7
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc--cccC---CCCCeeeEEeccCCCEEEEec-CC
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL--HNIP---VPEPVAPLATTADGSYLFTGG-LS 104 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~-~d 104 (387)
+..+++|.+.|++++|+.++..++ +++.|+.|++|++.+.... +.+. .-+..+.+.|.||-+-++... ..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~la----t~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLA----TISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeE----EEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 346789999999999999665554 5999999999999764321 1111 224678899999987665544 45
Q ss_pred CcEEEEeCCC---Ccee---------EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 105 GNVYAISVPK---GDIL---------RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 105 g~i~i~d~~~---~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
..+++|.+.. |... ..-+.|.-.+..+-...++.++++++.|..|.+|++ .+..+
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l-------------kGq~L 221 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL-------------KGQLL 221 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec-------------CCcee
Confidence 5899998732 2111 112346667777778888899999999999999999 46667
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCc-----EEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGT-----HLSTVT-FPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
..+...+..-...+++|++ +++++++.---+++|.+- .|. ....+. |.+.|..++|+++...+++.+.|
T Consensus 222 ~~idtnq~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eeeccccccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 7777667777778889885 999999999999999863 221 222333 77899999999999999999999
Q ss_pred CcEEEEecccccc--ccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621 244 GLIYKGLLKYQSR--QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE 321 (387)
Q Consensus 244 g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 321 (387)
|.+++||..-.-. +.......-...+..-.+....+..+|.|+.|+.+. ...++++..++|+....++.-+.+.|++
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceee
Confidence 9999999864211 000000000011122334445899999999888764 4579999999999999998888889999
Q ss_pred EEEEecCCCceee
Q 035621 322 MVIATGIGGSRGC 334 (387)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (387)
+.|++.......|
T Consensus 379 is~~~~g~~~atc 391 (420)
T KOG2096|consen 379 ISYSSDGKYIATC 391 (420)
T ss_pred EEecCCCcEEeee
Confidence 9998765544433
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=183.23 Aligned_cols=274 Identities=14% Similarity=0.164 Sum_probs=214.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|-|||..|+.+.. ..+.+||+..|..++++++|.+.|++++|+.++.. +++|+.|..|.+|+.. -+-+..+.
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkr----FASG~aDK~VI~W~~k-lEG~LkYS 91 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKR----FASGSADKSVIIWTSK-LEGILKYS 91 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCce----eccCCCceeEEEeccc-ccceeeec
Confidence 689999998887754 57999999999999999999999999999996554 4559999999999853 34445677
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
|.+.|.|+.|+|-...|++++-+ ..-+|........ ..+ ....+.+++|..||++++.|-.+|+|.+-+-..
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g----- 163 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNG----- 163 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCC-----
Confidence 99999999999998999988753 3678876543322 121 245688999999999999999999998875411
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCC---CceEEEEeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSF---NSIIISCSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDF 237 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 237 (387)
+....+..--+.+++|.+++|+|... ...++...+..++.+|.+. |+.+. .-...-...|+.+.++|.++
T Consensus 164 -----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 -----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred -----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence 12223334445788999999998752 3578888888899988875 44333 33456678899999999999
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
+.|+.|+.+.+|..+. ..+.+. .....+|+.++..|++++++.|+.||+|..|++-..
T Consensus 238 LiGGsdk~L~~fTR~G---------vrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDG---------VRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEccCCCceEEEeecC---------eEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 9999999999986543 233332 235678999999999999999999999999997654
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.9e-24 Score=177.29 Aligned_cols=256 Identities=14% Similarity=0.190 Sum_probs=198.7
Q ss_pred cccCCCcE-EEeeCCCCcEEEEeCCCCc---e--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 3 HHLPCNEV-ILTSSPEGPITAYNPSSGA---I--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 3 ~~s~~~~~-l~~~~~dg~i~iwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+|+....+ +++.+.|..+++|.- .|+ . +....+. .-.|++... ..-++++|+..+.|+|||++...+
T Consensus 41 ~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd--~~~Cv~~~s----~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 41 NWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGD--NAFCVACAS----QSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred eccccceEEEeecCCceeEEEecc-cCCCCccceeeccccc--hHHHHhhhh----cceeeeccCcCceeeehhhHHHHH
Confidence 44444432 233456778889973 343 2 2222222 233444333 223556699999999999985555
Q ss_pred ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621 77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGS-LLISGGDDGVIATVP 153 (387)
Q Consensus 77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 153 (387)
.+.++ |...|+++.++....+||+++..|.|.+..+.++.....|... ...|+-+.|+|..+ +|.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 55554 7789999999999999999999999999999998877777644 45567899999766 667889999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 233 (387)
+.. ..........|..+...|+|+|.. ..+|++.+.|..|.+||++.......+....+...++|.++
T Consensus 194 v~g-----------~sp~~~~~~~HsAP~~gicfspsn-e~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 194 VQG-----------MSPIFHASEAHSAPCRGICFSPSN-EALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred ccC-----------CCcccchhhhccCCcCcceecCCc-cceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence 932 223344457899999999999985 68999999999999999998888888888899999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
|.+|++|...|.|+.||++. .+.++.....|...|++++|-|..
T Consensus 262 G~~L~aG~s~G~~i~YD~R~--------~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 262 GTYLCAGNSKGELIAYDMRS--------TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEeecCCceEEEEeccc--------CCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999998 455666667899999999998764
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=170.01 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=200.1
Q ss_pred ccCCCcEEEeeCCCC-----cEEEEeCCCCceeEeccCC----CCCceeEEEcCc---cceeeeccccCCCCCeEEEEEc
Q 035621 4 HLPCNEVILTSSPEG-----PITAYNPSSGAILAHFSGS----RSPRRGLTFAGK---PFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~---~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
.-|+.++++.+-.+. .|+||+-..... +-.| .....|++|... .--.+++++.|+.|..|.|||+
T Consensus 133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred eccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence 446666666664332 266676433221 1112 122456666431 2224557778999999999998
Q ss_pred cCCCc---cccc-------------------CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe
Q 035621 72 WSSTP---LHNI-------------------PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128 (387)
Q Consensus 72 ~~~~~---~~~~-------------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 128 (387)
.-... ...+ .|...|..++|+.. .+.||+|+.|.+|.+||+.++++..++..|.+.|
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V 289 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV 289 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence 52211 0000 14456778888774 4689999999999999999999999999999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621 129 SCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF 207 (387)
Q Consensus 129 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i 207 (387)
.++.|+| ....|++|+.|+++.+.|+|... .....-.-.+.|-.++|.|.. ...++++..||+++-
T Consensus 290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~------------~s~~~wk~~g~VEkv~w~~~s-e~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPS------------NSGKEWKFDGEVEKVAWDPHS-ENSFFVSTDDGTVYY 356 (463)
T ss_pred eEEEecCCCceEEEeccccceEEeeeccCcc------------ccCceEEeccceEEEEecCCC-ceeEEEecCCceEEe
Confidence 9999999 56799999999999999996411 111111235678899999886 567888899999999
Q ss_pred EeCCCC-cEEEEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 208 WRLLNG-THLSTVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 208 wd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
+|+|+. +++.++. |..+|.++++++.- .++++++.|+.+++|++............ -.-+...|.++.|+
T Consensus 357 ~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-------~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 357 FDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-------FKLGRLHCFALDPD 429 (463)
T ss_pred eecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-------ccccceeecccCCC
Confidence 999975 8888887 88999999999865 56778889999999999764322111000 01123566677776
Q ss_pred CC-EEEEEeCCCcEEEEECCCccEEE
Q 035621 285 GK-NLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 285 ~~-~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
-. +++.|+..+.++|||+.+...+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cceEEEecCccceEEEeecccChhHH
Confidence 54 67788888899999998877654
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=9.3e-24 Score=169.24 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=163.6
Q ss_pred CCCCeeeEEeccCC--CEEEEecCCCcEEEEeCCC----------------CceeEEccCCCCCeEEEEEcCC-CCEEEE
Q 035621 82 VPEPVAPLATTADG--SYLFTGGLSGNVYAISVPK----------------GDILRSFSAHDKPVSCLKISPD-GSLLIS 142 (387)
Q Consensus 82 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 142 (387)
|.+.++.+.-++-+ .+.++-+..|.|+||++.. .+++.++.+|...=..++|||- ...|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 44556666666644 4556667889999999832 2467788899988899999993 225888
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---cEEEEE
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---THLSTV 219 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 219 (387)
|..-+.|++|..... .-..-...+.+|...|..++|+|.. ...|++||-||+|+|||++.+ .++.+-
T Consensus 230 GDc~~~I~lw~~~~g---------~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTG---------SWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred CccccceEeeeeccC---------ceeecCccccccccchhhhccCCcc-CceEEeeecCceEEEEEecCCCccceeEee
Confidence 888899999977321 0111223456799999999999987 589999999999999999988 455555
Q ss_pred ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeCCCcEE
Q 035621 220 TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVY 298 (387)
Q Consensus 220 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~ 298 (387)
.|++.|+.+.|+....+|++|+.||.+.|||++.-. ...++..+..|..+|+++.|+|. ...|++++.|.+|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 588999999999999999999999999999999743 23455556789999999999985 45788889999999
Q ss_pred EEECCCc
Q 035621 299 IWEIEKR 305 (387)
Q Consensus 299 iwd~~~~ 305 (387)
+||+...
T Consensus 374 iWDlsvE 380 (440)
T KOG0302|consen 374 IWDLSVE 380 (440)
T ss_pred EEEeecc
Confidence 9998643
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=8.1e-23 Score=160.82 Aligned_cols=270 Identities=15% Similarity=0.185 Sum_probs=197.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-------ce-----eEecc-CCCCCceeEEEcC---ccceeeeccccCCCCCe
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-------AI-----LAHFS-GSRSPRRGLTFAG---KPFIAASHISPTTGSGS 65 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~-----~~~~~-~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~ 65 (387)
..|||||..|++-+.|..+.+|++... .. ..+++ .....|...+|-+ ...-..+++++.+.+.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 469999999999999999999998421 10 11111 1223466666653 11113445666899999
Q ss_pred EEEEEccCCCcccccC---CCC---CeeeEEeccCCCEEEEecCCCcEEEEeC-CCCceeEEc--c-----CCCCCeEEE
Q 035621 66 VHLYNLWSSTPLHNIP---VPE---PVAPLATTADGSYLFTGGLSGNVYAISV-PKGDILRSF--S-----AHDKPVSCL 131 (387)
Q Consensus 66 v~vw~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~--~-----~~~~~v~~~ 131 (387)
|++||.-+|+....+. |.+ ...+++|+|||..|++| ....|++||+ +.|+....+ . +..+-+.++
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 9999999998877665 333 46789999999999987 5678999999 555432211 1 235678999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEe
Q 035621 132 KISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWR 209 (387)
Q Consensus 132 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd 209 (387)
+|+| +.+.++.++....+-||.- ....++..+.+|.+.|+.+.|++++ +.|.+|+. |-.|..||
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~------------~~~~pl~llggh~gGvThL~~~edG--n~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYND------------DGRRPLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDDKILCWD 279 (406)
T ss_pred eccCCCCcceeeecccceeeeEec------------CCCCceeeecccCCCeeeEEeccCc--CeecccccCCCeEEEEe
Confidence 9999 5568999999888888866 5667888888999999999999996 56776665 78899999
Q ss_pred CCCC-cEEEEEe-cC---CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 210 LLNG-THLSTVT-FP---CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 210 ~~~~-~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
++.. .++..+. +. ..=.-....|++++|++|+.||.|++||++... .....+..|...++.++++|-
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--------CcccccccccccccceecCcc
Confidence 9864 3444443 21 222235567899999999999999999998722 222233468889999999999
Q ss_pred CCEEEEEeCC
Q 035621 285 GKNLVSAAED 294 (387)
Q Consensus 285 ~~~l~s~~~d 294 (387)
-.++++++..
T Consensus 352 mpilatssGq 361 (406)
T KOG2919|consen 352 MPILATSSGQ 361 (406)
T ss_pred cceeeeccCc
Confidence 8888887654
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.7e-23 Score=161.14 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=197.9
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR 119 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 119 (387)
..|+.|++ .+.+++.|+.+|.|.+||+.+....+.+. |-.+|.+++|+++|+.|++++.|..|.+||+..|.+++
T Consensus 26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 68899999 44555569999999999999998777776 66899999999999999999999999999999999998
Q ss_pred EccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCC
Q 035621 120 SFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSF 192 (387)
Q Consensus 120 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~ 192 (387)
.+. ...+|....|+|..+ .+++.-.+..-.+-++.. +.+..-.. +..-.+..|.+.
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--------------~~h~~Lp~d~d~dln~sas~~~fdr~-- 164 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--------------PKHSVLPKDDDGDLNSSASHGVFDRR-- 164 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--------------CceeeccCCCccccccccccccccCC--
Confidence 886 578999999999443 444443444444555421 11111000 001111234444
Q ss_pred CceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc---cccc-cceeE
Q 035621 193 NSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ---QMHK-GQELV 266 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~-~~~~~ 266 (387)
|+++++|...|.+.++|..+.+++..++. ...|..+.++..|+.++.-+.|..|+.|+++.-... .... ..++.
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 69999999999999999999999988873 368999999999999999999999999998742111 0000 00000
Q ss_pred eecccccccEEEEEEecCCCEEEEEeC-CCcEEEEECCCccEEEEeecccCCCce-------eEEEEecCCCceeeEEEe
Q 035621 267 TLANRHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEKRQVVMVLKNELAGSIS-------EMVIATGIGGSRGCGVVK 338 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~~~~~ 338 (387)
.. -....=.+++|+.+|.|++.++. -..++||.-..|.+++.+.+......- ...+++-..+.+.+|...
T Consensus 245 Dv--VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 245 DV--VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred HH--HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 00 11223457899999999987764 457999999999999999876422222 223444455556666554
Q ss_pred cCC
Q 035621 339 TGK 341 (387)
Q Consensus 339 ~~~ 341 (387)
.-.
T Consensus 323 ~~e 325 (405)
T KOG1273|consen 323 QVE 325 (405)
T ss_pred ccc
Confidence 433
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-24 Score=194.97 Aligned_cols=239 Identities=20% Similarity=0.232 Sum_probs=196.2
Q ss_pred ccccCCCcE----EEeeCCCCcEEEEeCCC---C---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEV----ILTSSPEGPITAYNPSS---G---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~----l~~~~~dg~i~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
|+|.+.|.. ||.|..||.|.+||... + ..+.++..|.++|..+.|++. ..+.+++|+.||.|.|||+
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~---q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF---QGNLLASGADDGEILIWDL 146 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc---CCceeeccCCCCcEEEecc
Confidence 567777655 89999999999999864 2 346677889999999999994 2335667999999999999
Q ss_pred cCCCcccccC---CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCC--CeEEEEEcCCCC-EEEEEe
Q 035621 72 WSSTPLHNIP---VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDK--PVSCLKISPDGS-LLISGG 144 (387)
Q Consensus 72 ~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~ 144 (387)
...+...... ..+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+.. .+++++
T Consensus 147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec
Confidence 8766555442 4578999999984 56788889999999999999888877765544 478899999764 666666
Q ss_pred CCC---cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec
Q 035621 145 DDG---VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF 221 (387)
Q Consensus 145 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 221 (387)
.|. .|.+||+|. ...+++.+.+|...|.++.|++.. ..+|++++.|+.|.+|+.++++.+..+..
T Consensus 227 ~dd~~PviqlWDlR~-----------assP~k~~~~H~~GilslsWc~~D-~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRF-----------ASSPLKILEGHQRGILSLSWCPQD-PRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred CCCCCceeEeecccc-----------cCCchhhhcccccceeeeccCCCC-chhhhcccCCCCeeEecCCCceEeeecCC
Confidence 554 599999964 456778889999999999999874 68999999999999999999999999984
Q ss_pred -CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccc
Q 035621 222 -PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 222 -~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 255 (387)
...+..+.|.|... .+++++-||.|.|+.+....
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 56799999999886 67777889999999998754
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.9e-22 Score=156.68 Aligned_cols=214 Identities=12% Similarity=0.087 Sum_probs=165.3
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 155 (387)
|.+-|.++.|.+.|+.+|+|+.|++++|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 5567999999999999999999999999997443 45667889999999999976 58999999999999999652
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEEe--------c
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTVT--------F 221 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~--------~ 221 (387)
. ..............++....+.|+.+.|.|..-|-.|++++.||.+|||+....-. ...+. +
T Consensus 92 ~---~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 92 E---KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred c---cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 1 11111112445566777788999999999998889999999999999998765332 22232 3
Q ss_pred CCceeEEEeCCCC---CeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCC----CEEE
Q 035621 222 PCAIMGLALDPTE---TDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG----KNLV 289 (387)
Q Consensus 222 ~~~v~~~~~~~~~---~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~ 289 (387)
..+..|+.|+|.. .+|++|+.+ +.++||......+. ......+.+|..+|+.++|.|+- .+||
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 4567899999753 678888765 57888887764422 12223345899999999999963 4799
Q ss_pred EEeCCCcEEEEECCC
Q 035621 290 SAAEDGSVYIWEIEK 304 (387)
Q Consensus 290 s~~~dg~i~iwd~~~ 304 (387)
+++.|| |+||+++.
T Consensus 244 vA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKV 257 (361)
T ss_pred EeecCc-EEEEEEee
Confidence 999999 99999984
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=170.60 Aligned_cols=238 Identities=17% Similarity=0.229 Sum_probs=197.7
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeE--eccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILA--HFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
.+|.|+|. .+++++.....+.||+.+.+... .+.++.. .+.....+++.. .++..+..|.|.+....+++.+
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~----fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN----FIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC----eEEEcccCceEEeehhhhhhhh
Confidence 46899998 89999999999999999887533 3344443 367778888544 4555899999999999999999
Q ss_pred cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
..++.++.|..++|+.+++.|++.+.+|.|.+||++...+++.+.. .+.| ++++.++++.+|++|+..|.|.|||..
T Consensus 339 ~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999999999999999999999999999999999988864 3333 567778999999999999999999974
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcEEEEEecC----CceeEEE
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTHLSTVTFP----CAIMGLA 229 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~----~~v~~~~ 229 (387)
..... ...+++..+..-...|+++.|+++. ++|+.+|. +..+++-.+.+......++.. +.++|++
T Consensus 418 s~~~s------~~PkPik~~dNLtt~Itsl~Fn~d~--qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 418 SCFAS------TNPKPIKTVDNLTTAITSLQFNHDA--QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred hhhcc------CCCCchhhhhhhheeeeeeeeCcch--hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE
Confidence 43322 4566777777788899999999986 88887775 678999988887777666632 4699999
Q ss_pred eCCCCCeEEEEccCCcEEEEecc
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
|+|.+.++++|..+|.+.+|.+.
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999874
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=4.3e-23 Score=162.63 Aligned_cols=285 Identities=16% Similarity=0.228 Sum_probs=204.4
Q ss_pred cEEEeeCCCCcEEEEeCCCCc---eeEecc--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621 9 EVILTSSPEGPITAYNPSSGA---ILAHFS--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V 82 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~ 82 (387)
..+|+.+. +.+.+|+....- .++.+. .|......++|.-+..-....++.++.-|.|+|.|+.+++....+. |
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 45677665 578888875332 333332 3566677788874322222344558899999999999998887776 7
Q ss_pred CCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--c
Q 035621 83 PEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF--Q 156 (387)
Q Consensus 83 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~ 156 (387)
...|+.+.+.|+ .+++++++.|..|++|++++..++..+ .+|...|.++.|++++.++++++.|.+|++|++. +
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 789999999996 478999999999999999999998887 4799999999999999999999999999999996 2
Q ss_pred ccccCCCC----CCCCc---------cce-EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-Cc-------
Q 035621 157 LVDEHTDD----KNPDD---------LML-QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GT------- 214 (387)
Q Consensus 157 ~~~~~~~~----~~~~~---------~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------- 214 (387)
........ .+.+. .+. .+..-|...|.|+.|. ++++++-+-++.|..|.... .+
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----gd~ilSkscenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----GDFILSKSCENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----hhheeecccCceEEEEecchhhhhhhccCC
Confidence 21110000 00010 111 1234577788888774 47899999999999998721 11
Q ss_pred ------EEEEEecC-Ccee--EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621 215 ------HLSTVTFP-CAIM--GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 215 ------~~~~~~~~-~~v~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
.+..+..+ ..+. ..+|.|-+++|+.|...|.+++||++..+.... ..+. .......|...+|+.||
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~---ttl~--~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC---TTLT--HSKSGSTVRQTSFSRDG 365 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC---ceEE--eccccceeeeeeecccC
Confidence 12233322 2343 456677889999999999999999998543211 1111 11234579999999999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 035621 286 KNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~ 303 (387)
..|+..+.|++|.-||.-
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 999999999999999854
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=175.31 Aligned_cols=263 Identities=17% Similarity=0.203 Sum_probs=187.2
Q ss_pred ccccCCCCCeEEEEEccCCCc-------ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--ccCCCC
Q 035621 56 HISPTTGSGSVHLYNLWSSTP-------LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FSAHDK 126 (387)
Q Consensus 56 ~~~~~~~d~~v~vw~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~ 126 (387)
.|+.+..||.|.++|.....- ..-+-|...|..+.|-|....|++++.|.++++||+++.+++.. +.+|.+
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 344588999999999865422 12223778999999999777899999999999999999988776 789999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccc------------cCC---CCCCCCccceEeeeccCCCeEE---EEE
Q 035621 127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVD------------EHT---DDKNPDDLMLQKFVAHNDSVTA---ITC 187 (387)
Q Consensus 127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~i~~---~~~ 187 (387)
.|.+++|.| +...|++|+.||.|.|||++-... ... ....+..+.+....++...|.+ +.+
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 999999999 456899999999999999964320 000 1111222333444555555555 444
Q ss_pred eeCCCCceEEEEeC-CCcEEEEeCCCCcEEEEEe---------c---CCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 188 CIGSFNSIIISCSM-DCTCKFWRLLNGTHLSTVT---------F---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 188 ~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---------~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
..+ ...|++++. |+.|+|||+++........ + ...+.++.....|.+|++.+.|+.|++|++...
T Consensus 226 fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 226 FKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred Eec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 444 378998888 9999999999765443321 1 235788888889999999999999999999874
Q ss_pred ccccccccceeEeeccccccc--EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE-EeecccCCCceeEEEEecC
Q 035621 255 SRQQMHKGQELVTLANRHDGV--VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM-VLKNELAGSISEMVIATGI 328 (387)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 328 (387)
... +...+.++... -..-..+|++.++++|+.|...++|.+.+.+.-- .+.+| ...|+.+.+.+..
T Consensus 304 s~s-------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh-t~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 304 SIS-------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH-TREVTTVRWLPSA 372 (720)
T ss_pred CcC-------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc-ceEEEEEeecccc
Confidence 321 11112222211 1122468999999999999999999999876543 44454 4578888665543
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=159.37 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=195.1
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCC-------Cc-------ccccCCCCCeeeEEec-------cCCCEEE
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-------TP-------LHNIPVPEPVAPLATT-------ADGSYLF 99 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-------~~-------~~~~~~~~~v~~~~~~-------~~~~~l~ 99 (387)
...+.|+|+ .+.+.+-+.|..+.+|++... .. ...+...+.|...+|- |+..+++
T Consensus 52 ~kgckWSPD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 52 LKGCKWSPD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hccceeCCC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 567889994 455556889999999998421 11 1122234567777775 6778999
Q ss_pred EecCCCcEEEEeCCCCceeEEccC--CCC---CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 100 TGGLSGNVYAISVPKGDILRSFSA--HDK---PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 100 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+.+.+.-|++||.-+|+....+.+ |.. .-.+++|+|||.+|++|. .+.|++||+.+.-.... ......+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~----vy~t~~~~ 202 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP----VYTTVTKG 202 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc----chhhhhcc
Confidence 999999999999999998877753 332 346899999999998765 57999999943211100 00011111
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc-CCcEEEEecc
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS-DGLIYKGLLK 252 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 252 (387)
-.+..+-|.+++|+|.. ...++.++...++-||.-..+.++..+. +.+.|+.++|.++|+.|++|.. +..|..||++
T Consensus 203 k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 23446778899999985 4689999999999999988888887776 7899999999999999999987 8899999999
Q ss_pred ccccccccccceeEeecccccc-cEEEEE--EecCCCEEEEEeCCCcEEEEECCC-ccEEEEeecccCCCceeEEEEecC
Q 035621 253 YQSRQQMHKGQELVTLANRHDG-VVVSVM--MMNEGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
... .++-.+..|.. .=..|. ..|++++|++|+.||.|++||++. +..+..+..+ ...++.+.+.+.+
T Consensus 282 ~~~--------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m 352 (406)
T KOG2919|consen 282 YSR--------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM 352 (406)
T ss_pred hcc--------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence 732 22222233443 223344 458999999999999999999998 7767666655 3477777766653
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=6.1e-22 Score=170.59 Aligned_cols=289 Identities=18% Similarity=0.161 Sum_probs=201.6
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--cc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--NI 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--~~ 80 (387)
.|.|.+ .+|.|. ...|.+||..+......+.+|..+|+|+.|-|...+.+ .+++|+.|+.|.+|.++...... .+
T Consensus 21 sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a-~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 21 SWGPGG-LVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVA-EMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred cccccc-eEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccc-eEEEccCCCcEEEEEEeehheEEEEee
Confidence 453433 455554 47899999988878889999999999999998655433 78889999999999998443332 33
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC----------------------------------------------
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK---------------------------------------------- 114 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------------------------------------------- 114 (387)
++ ....+++++..-....+...|+.+.+||.+.
T Consensus 98 ~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 98 QG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred cC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 33 2333344433322222223455555555421
Q ss_pred --C--ceeEEccCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCcccccCCCC---------CCCCccceEe----
Q 035621 115 --G--DILRSFSAHDKPVSCLKISPDG---SLLISGGDDGVIATVPIFQLVDEHTDD---------KNPDDLMLQK---- 174 (387)
Q Consensus 115 --~--~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~---- 174 (387)
. +.+..+.+|...|.+++|...+ -+|++++.|..|+||.+.-..+..... ..+.......
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 1 2345667899999999998744 389999999999999984322111000 0011111111
Q ss_pred ------eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--EEEe------cCCceeEEEeCCCCCeEEEE
Q 035621 175 ------FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL--STVT------FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 175 ------~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~------~~~~v~~~~~~~~~~~l~~~ 240 (387)
+.+|.+.|.++.|+|.. ..|++++.|.++.+|...+..-+ .... .........|+|+++.+++-
T Consensus 257 is~eall~GHeDWV~sv~W~p~~--~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEG--LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred EehhhhhcCcccceEEEEEccch--hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 24899999999999985 78999999999999987654322 2222 12358899999999999999
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+..|..++|...... .........+|...|..++|+|.|.+|++.+.|.+-|+|-.-
T Consensus 335 g~~Gg~hlWkt~d~~------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKT------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cccCcEEEEeccCcc------ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 999999999832211 123333456999999999999999999999999999998755
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.3e-23 Score=165.55 Aligned_cols=240 Identities=13% Similarity=0.173 Sum_probs=192.3
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC----CC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP----VP 83 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~----~~ 83 (387)
..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.+.|.. ..++++++.|..|++|++++..++..+. |.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~---~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR---PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC---CcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 3578889999999999999999999999999999999999953 2344559999999999999999998876 77
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE----------------------------EccCCCCCeEEEEEcC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR----------------------------SFSAHDKPVSCLKISP 135 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~~~~~~ 135 (387)
..|.++.|+++|.++++++.|.+|++|++...+... +-.-|...|-|+.|-
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~- 260 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF- 260 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-
Confidence 899999999999999999999999999997332100 112356666677764
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccccC--CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDEH--TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
|+++++-+-++.|..|...+..+.. ..+.......+.++......|.-+.|..+.-+++|+.|...|.+.+||++..
T Consensus 261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 5789999999999999875443321 1122233445667777778899999888877789999999999999999987
Q ss_pred cEE--EEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621 214 THL--STVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 214 ~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
.+. .++. ....|...+|+.|+..|+..+.|+.|.-||..
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 653 2232 35679999999999999999999999999864
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.6e-23 Score=190.04 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=190.8
Q ss_pred CCCeEEEEEcc--CC----CcccccCCCCCeeeEEeccCCCE----EEEecCCCcEEEEeCCC---C---ceeEEccCCC
Q 035621 62 GSGSVHLYNLW--SS----TPLHNIPVPEPVAPLATTADGSY----LFTGGLSGNVYAISVPK---G---DILRSFSAHD 125 (387)
Q Consensus 62 ~d~~v~vw~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~d~~~---~---~~~~~~~~~~ 125 (387)
.+.++.+|.+. +. +....+......+.++|.+.|.. |+.|..||.|.+||... + ..+.+...|.
T Consensus 37 t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 37 TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred cccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC
Confidence 34455555443 22 34455556678999999997765 88888999999999854 2 3456677899
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621 126 KPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT 204 (387)
Q Consensus 126 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~ 204 (387)
+.|..+.|++.. ++|++|+.||.|.|||+.+....... . -....+.|.+++|...- ..+|++++.+|+
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~---------~-~~~~~~eI~~lsWNrkv-qhILAS~s~sg~ 185 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP---------G-SQAPPSEIKCLSWNRKV-SHILASGSPSGR 185 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC---------C-CCCCcccceEeccchhh-hHHhhccCCCCC
Confidence 999999999955 59999999999999999653222110 0 22345789999997654 578999999999
Q ss_pred EEEEeCCCCcEEEEEecC---CceeEEEeCCCC-CeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEE
Q 035621 205 CKFWRLLNGTHLSTVTFP---CAIMGLALDPTE-TDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV 277 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~-~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (387)
+.|||++..+++..+... ..+..++|+|+. ..+++++.| -.|.+||++. .......+.+|...|.
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~--------assP~k~~~~H~~Gil 257 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF--------ASSPLKILEGHQRGIL 257 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc--------cCCchhhhccccccee
Confidence 999999999888777633 348899999987 456666553 4699999987 3344445568999999
Q ss_pred EEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621 278 SVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331 (387)
Q Consensus 278 ~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 331 (387)
++.|++.+ ++|++++.|+.|.+|+.++++.+..+... ..-+..+-|++..++-
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSV 311 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcch
Confidence 99999866 89999999999999999999999999874 3367777777666543
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-20 Score=142.23 Aligned_cols=262 Identities=13% Similarity=0.161 Sum_probs=189.1
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCC----------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSS----------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
+++|.+++|++|+.+|.|.+..+++ ...+...++|.++++.++|..+..+ .+.||.|+-|...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Ll-------s~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLL-------SGGDGLVYGWEWN 89 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhee-------eccCceEEEeeeh
Confidence 6899999999999999999998753 2335556899999999999964433 3457999999875
Q ss_pred CCCc------ccccCC--------CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 73 SSTP------LHNIPV--------PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 73 ~~~~------~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
.... +..... --.|+++-..|..+.++.++.|+.++-||+++|+..+.+++|+..|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4322 111111 12588999999877777777999999999999999999999999999999855556
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee---------ccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621 139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---------AHN-DSVTAITCCIGSFNSIIISCSMDCTCKFW 208 (387)
Q Consensus 139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iw 208 (387)
.+++|++||++++||++. .+.+..+. .|. ..|.+++.+ ..++++|+ ...+.+|
T Consensus 170 qilsG~EDGtvRvWd~kt------------~k~v~~ie~yk~~~~lRp~~g~wigala~~----edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKT------------QKHVSMIEPYKNPNLLRPDWGKWIGALAVN----EDWLVCGG-GPKLSLW 232 (325)
T ss_pred ceeecCCCccEEEEeccc------------cceeEEeccccChhhcCcccCceeEEEecc----CceEEecC-CCceeEE
Confidence 799999999999999943 33333332 222 346666643 25666654 5679999
Q ss_pred eCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CE
Q 035621 209 RLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KN 287 (387)
Q Consensus 209 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 287 (387)
.++..++...|..+..+..+.|.. +.+++++..+.+.-|.+.. .+...........++..|+..- ++
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G----------vl~a~ip~~s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG----------VLQANIPVESTACYSASWQTSPIKF 300 (325)
T ss_pred eccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeecc----------EEEEeccCCccceeeecccCCceEE
Confidence 999999999999999999999964 4788888888888887764 1111111222234444444222 34
Q ss_pred EEEEeCCCcEEEE
Q 035621 288 LVSAAEDGSVYIW 300 (387)
Q Consensus 288 l~s~~~dg~i~iw 300 (387)
|-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 5555666666665
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.90 E-value=6.6e-20 Score=147.08 Aligned_cols=291 Identities=12% Similarity=0.163 Sum_probs=209.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.|+.+...|..|+.|| -++|+................|-.+-|+..-.... .......+++.+...+..+..+.
T Consensus 11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV----~~~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIV----SIKQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEE----ecCCCceEEEEEcccCceEEEEe
Confidence 35778888999999987 67888765544332222333466677776432222 23344679999999999999999
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC---CCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA---HDKPVSCLKISPDGSLLISGG--DDGVIATVPIFQ 156 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 156 (387)
.+.+|.++.++.+ .|+++-. ..|+|||+++.++++++.. +...+.++.+++.+.+++.-+ ..|.|.+||+
T Consensus 86 fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~-- 160 (391)
T KOG2110|consen 86 FPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT-- 160 (391)
T ss_pred cCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc--
Confidence 9999999999764 5666544 4499999999999988763 445566777777777888654 4689999999
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceeEEEeCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIMGLALDP 232 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~~~ 232 (387)
.+-.++..+..|.+++.+++|++++ .+|+|+|..|+ |||+.+.+|+.+.+|+ ....|.+++|+|
T Consensus 161 ----------~nl~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 161 ----------INLQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred ----------ccceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 5677888899999999999999985 99999999997 6999999999999997 356799999999
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccc----------------c---cee-------Eee--cc-cccccEEEEEEe-
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHK----------------G---QEL-------VTL--AN-RHDGVVVSVMMM- 282 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------~---~~~-------~~~--~~-~~~~~v~~~~~s- 282 (387)
++.+|++.++.++|++|.+.......... . ..+ ..+ .. ...+.-..+.+.
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 99999999999999999987543111100 0 000 000 00 011111223333
Q ss_pred -cCCCEEEEEeCCCcEEEEECCC--ccEEEEeecc
Q 035621 283 -NEGKNLVSAAEDGSVYIWEIEK--RQVVMVLKNE 314 (387)
Q Consensus 283 -~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~ 314 (387)
+...++..++.||.++.|.+.- |.....++.|
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 4677899999999999998754 4444455433
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.5e-22 Score=170.23 Aligned_cols=242 Identities=12% Similarity=0.143 Sum_probs=188.7
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC--EEEEecCCCcEEE
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS--YLFTGGLSGNVYA 109 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i 109 (387)
..+.+|++.|.++...|. +.++++|+.||+|++|.+.++.++..+...+.|.|++|+|.+. .||++- ...+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 456899999999999994 4455569999999999999999999999999999999999765 344443 333444
Q ss_pred EeCCCCc-------------------------------------eeEEccCCCCCeEEEEEcCCCCEEEEEeCC---CcE
Q 035621 110 ISVPKGD-------------------------------------ILRSFSAHDKPVSCLKISPDGSLLISGGDD---GVI 149 (387)
Q Consensus 110 ~d~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i 149 (387)
.+..-|. -++..-.|...|+.+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4431110 012223477889999999999999998764 468
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGL 228 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~ 228 (387)
.|.++. .......|....+.+.++.|+|.. .+|+.++. ..|+|||+.....++.+. ....|..+
T Consensus 549 liHQLS------------K~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m 613 (733)
T KOG0650|consen 549 LIHQLS------------KRKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM 613 (733)
T ss_pred EEEecc------------cccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee
Confidence 888883 333334455566789999999986 66666654 679999998877666654 44578899
Q ss_pred EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+.+|.|..|++|+.|+.+..+|+... ..+...+..|...+++++|++.-.+|++|+.||++.||.
T Consensus 614 sihp~GDnli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eecCCCCeEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999999999999873 344444567999999999999999999999999999986
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.9e-21 Score=166.27 Aligned_cols=193 Identities=17% Similarity=0.191 Sum_probs=141.7
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
.|+.++|+| |...|++++.||.|++|.+...-. ......+-..+..|...|+++.|+|-. .+.|++++.|-+|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-----~e~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti 702 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-----PENEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTI 702 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCC-----CcccCCcceeeecccceEEEEEecchh-hhHhhhhhcccee
Confidence 367788888 677899999999999999843211 113455667788999999999999986 5899999999999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 206 KFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 206 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
++||+.+++....+. |...|..++|+|+|+.+++.+.||.|++|..+..+.... ++... -...--.+.|.-|
T Consensus 703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gp------vgtRgARi~wacd 775 (1012)
T KOG1445|consen 703 ELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKGP------VGTRGARILWACD 775 (1012)
T ss_pred eeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCCC------ccCcceeEEEEec
Confidence 999999998777776 889999999999999999999999999999887432111 11111 1122345677779
Q ss_pred CCEEEEEeCC----CcEEEEECCCc--cEEEEeecc--------cCCCceeEEEEecCCCce
Q 035621 285 GKNLVSAAED----GSVYIWEIEKR--QVVMVLKNE--------LAGSISEMVIATGIGGSR 332 (387)
Q Consensus 285 ~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~--------~~~~v~~~~~~~~~~~~~ 332 (387)
|+++++.+.| ..|.+||.++- ..+.+..-. +-..-+++.|.+|-+|..
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence 9999887766 46889987663 333332211 112345677877777764
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.5e-21 Score=158.14 Aligned_cols=255 Identities=16% Similarity=0.210 Sum_probs=188.7
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc---------cc-CCCCCeeeEEeccCCCEEEEecCCCc
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH---------NI-PVPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~---------~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
...++..+.|.++ ..+.++|++.|..|++|.++.+..-. .+ .|...|+++.|+|+|..|++|+.+|.
T Consensus 12 ~~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CCCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 3456888889875 23377889999999999987654433 11 27789999999999999999999999
Q ss_pred EEEEeCC--------C--------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 107 VYAISVP--------K--------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 107 i~i~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
+.+|... + ....+.+.+|...|..++|+|+++++++++.|..+++||+ ..+.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv------------~~G~ 156 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV------------HAGQ 156 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe------------ccce
Confidence 9999865 2 1123456789999999999999999999999999999999 6788
Q ss_pred ceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe------------------------cCCcee
Q 035621 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT------------------------FPCAIM 226 (387)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------~~~~v~ 226 (387)
....+..|...+..++|.|-. +++++-+.|...+.+.+...+.+.... .+....
T Consensus 157 l~~~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 888899999999999999885 899999988877777765433222111 123456
Q ss_pred EEEeCCCCCeEEEEcc----CCc-----EEEEecccccccc---------------------------c-----------
Q 035621 227 GLALDPTETDFFAAGS----DGL-----IYKGLLKYQSRQQ---------------------------M----------- 259 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~----dg~-----i~i~d~~~~~~~~---------------------------~----------- 259 (387)
.++|+|+|..+++... .+. .|+++-..-.+.. .
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 7888999988887542 222 2444332111000 0
Q ss_pred --------------cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 260 --------------HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 260 --------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
....++....+-|-..++.++|++||.+|+..+.||...+--++..++-
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 0011222233457888999999999999999999999888888777665
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=6.5e-21 Score=171.75 Aligned_cols=289 Identities=14% Similarity=0.180 Sum_probs=212.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeeccccCCCCCeEEEEEcc-CC---
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SS--- 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~--- 74 (387)
+.|+|-...++++...-.|+|||.+.++.+..|..+.. .|+.+.+-.+. ..+.+.+++.||.|+||+-- ++
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeeccc--chhheeeeccCceEEEecccccccCC
Confidence 56788888899998778999999999999888865443 48888887532 33466779999999999642 22
Q ss_pred -CcccccC-------C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcC-CCCEEEEE
Q 035621 75 -TPLHNIP-------V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISP-DGSLLISG 143 (387)
Q Consensus 75 -~~~~~~~-------~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~ 143 (387)
+.+.... . .+.-.-+.|.....+|+++|.-..|+|||.....++..+.. ....|+++.-+- .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 1111111 1 11123456777666777777788999999988877777653 344567765443 57899999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT- 220 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 220 (387)
..||.|++||.+-. .....+.....|+.. |..+.+.+.+.+ .|++|+.||.|++||++.......+.
T Consensus 1228 faDGsvRvyD~R~a---------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMA---------PPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred ecCCceEEeecccC---------CccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCccccccee
Confidence 99999999999643 233466777888887 999999887754 79999999999999999853222222
Q ss_pred -----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 221 -----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 221 -----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
..+..+++..++....+++|+. +.|.||++........... ..+.....+.+.+++|+|..-++|+|+.|.
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n---~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN---PGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC---cccccCcCCCcceeeecchhHhhhhccCCc
Confidence 1345999999999999999998 9999999976433222111 122233456689999999999999999999
Q ss_pred cEEEEECCCcc
Q 035621 296 SVYIWEIEKRQ 306 (387)
Q Consensus 296 ~i~iwd~~~~~ 306 (387)
+|.||....++
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999987654
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=8.2e-19 Score=157.64 Aligned_cols=299 Identities=24% Similarity=0.412 Sum_probs=221.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCC-CceeEEE-cCccceeeeccccCCCCCeEEEEEccC-CCcc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRS-PRRGLTF-AGKPFIAASHISPTTGSGSVHLYNLWS-STPL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~ 77 (387)
+.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .++.. ......+..|+.+.+|+... ....
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN--SILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc--eEEeccCCCCccEEEEEecCCCeEE
Confidence 3577889999999999999999998776 6666766443 6777776 55332 11122245599999999987 4444
Q ss_pred c-ccCCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 035621 78 H-NIPVPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPI 154 (387)
Q Consensus 78 ~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 154 (387)
. ...+...+..++|+|++..++.++. ++.+++|+...+..+..+..|...+.+++|+|++. .+++++.|+.|++||.
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 4 4447788999999999998888885 99999999998888899999999999999999998 5555599999999987
Q ss_pred CcccccCCCCCCCCccceE-eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEE-ecCCceeEEEeC
Q 035621 155 FQLVDEHTDDKNPDDLMLQ-KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTV-TFPCAIMGLALD 231 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~ 231 (387)
....... .+..|.... ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|+
T Consensus 229 ------------~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 229 ------------STGKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred ------------CCCcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 3334444 577777775 33777775 7888999999999999987664 4443 357889999999
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCccEEEE
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-AEDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 310 (387)
|++..+++++.|+.+.+|+........... ...|...+..+.|.+++..++.+ ..|+.+.+|++........
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLT-------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEEee-------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 998888888889889999887633211110 23577789999994332556655 6889999999998873333
Q ss_pred eecccCCCceeEEEEe
Q 035621 311 LKNELAGSISEMVIAT 326 (387)
Q Consensus 311 ~~~~~~~~v~~~~~~~ 326 (387)
..... .+..+.+..
T Consensus 367 ~~~~~--~~~~~~~~~ 380 (466)
T COG2319 367 LEGHS--NVLSVSFSP 380 (466)
T ss_pred ecCCc--eEEEEEECC
Confidence 32221 155555544
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.1e-22 Score=166.47 Aligned_cols=257 Identities=18% Similarity=0.188 Sum_probs=189.6
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--------CcccccC-CCCCeeeEEeccCCCEEEEec
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--------TPLHNIP-VPEPVAPLATTADGSYLFTGG 102 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 102 (387)
.++..|...|+.++|.| ....+++++.||.+.+|+++.. +++.++. |.++|.|+++.+++..+++|+
T Consensus 288 ~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 35667888999999999 5566677999999999999432 2344444 789999999999999999999
Q ss_pred CCCcEEEEeCCCC----------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 103 LSGNVYAISVPKG----------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 103 ~dg~i~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
.||+|+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+.... .+
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~------------~~- 430 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE------------SP- 430 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc------------Cc-
Confidence 9999999976422 233457799999999999999899999999999999987321 11
Q ss_pred Eeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--------CCceeEEEeCCCCCeEEEEcc
Q 035621 173 QKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--------PCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 173 ~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~ 242 (387)
..+... .+.-.++.+-... ....++...-+.-.++++...+.+..+.. ...+..+.++|.+...+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 112111 1122233332221 12233333334444555555555555541 145788999999999999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
|+.|+++|..++.. ......|...++++++.|+|.+|++++.||.+++|.+....++.....|.
T Consensus 510 d~~Ir~~dn~~~~~---------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKI---------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceeccccccccc---------chheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999999987432 22234788999999999999999999999999999999888887776553
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.7e-20 Score=148.28 Aligned_cols=290 Identities=11% Similarity=0.027 Sum_probs=208.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC------CCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS------SGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
+.||.++++|++|+.|..+++|++. +.+++.... .|...|.|++|..... .+.+|..+++|.+.|+++.
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~----~~~SG~~~~~VI~HDiEt~ 137 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR----FLYSGERWGTVIKHDIETK 137 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe----eEecCCCcceeEeeecccc
Confidence 6799999999999999999999985 335555443 3557899999997433 3445999999999999999
Q ss_pred CcccccCCCC---CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeE--EccCCCCCeEEEEEcCC-CCEEEEEeCCC
Q 035621 75 TPLHNIPVPE---PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILR--SFSAHDKPVSCLKISPD-GSLLISGGDDG 147 (387)
Q Consensus 75 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 147 (387)
+.+..+.+.. .|+.+..+|..+.|++.+.++.|.+||.+..+ .+. .+........++.|+|. ..+|++.+..+
T Consensus 138 qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 138 QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence 9988888765 89999999999999999999999999997665 221 12234556788999994 56888899999
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEecC----
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVTFP---- 222 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~---- 222 (387)
-+-+||++....... .......++.....-.++.|+|++ +.|++--....-.+||+.+..+ +..+.|.
T Consensus 218 G~~~~D~R~~~~~~~-----~~~~~~~L~~~~~~~M~~~~~~~G--~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 218 GPNVFDRRMQARPVY-----QRSMFKGLPQENTEWMGSLWSPSG--NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred CCCceeeccccchHH-----hhhccccCcccchhhhheeeCCCC--CeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 999999965321110 001111222223334677888875 6666655555556788876443 3344432
Q ss_pred ---CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--------------cccceeEeecccccccEEEEEEecCC
Q 035621 223 ---CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--------------HKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 223 ---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
..+.+++|..|- .+++|+.+-.|++|.+.......- .-.......+++|..-++.+.|+|..
T Consensus 291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence 246677777554 489999999999999865322110 00122334567999999999999999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 035621 286 KNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~ 303 (387)
.+|++.+..+.++||.-.
T Consensus 370 ~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 370 NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceEeccchhhheeccccc
Confidence 999999999999999743
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.3e-19 Score=158.17 Aligned_cols=297 Identities=14% Similarity=0.189 Sum_probs=217.0
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV 82 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~ 82 (387)
.||+|+++++.... ..|.||...|++++..+.+|..++..+.+.|.... +.++.+++.+|.|++||...+.+++.+..
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~-~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN-ANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCcc-ceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 48999998887664 68999999999999999999999999999985432 34556689999999999988877766653
Q ss_pred CCCeeeEE-----------------------------------------------------------eccCCCEEEEecC
Q 035621 83 PEPVAPLA-----------------------------------------------------------TTADGSYLFTGGL 103 (387)
Q Consensus 83 ~~~v~~~~-----------------------------------------------------------~~~~~~~l~~~~~ 103 (387)
..++..+. +++.|.+.... .
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~ 179 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-H 179 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-E
Confidence 33322222 22222222222 1
Q ss_pred CCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC
Q 035621 104 SGNVYAISVPKGDILR----SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN 179 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (387)
+..+.+|+.+++.... .-..|...+++.+++|++++++++..||.|.+|.-... .........+.-|.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~--------~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS--------SDDSETCTLLHWHH 251 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc--------ccccccceEEEecc
Confidence 2235566655533110 01246667899999999999999999999999965221 12334456677799
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
.+|++++|++++ .+|++|+..+.+.+|.+.+++...--+..++|..+.++||+.+.+....|+.|.+....+......
T Consensus 252 ~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 252 DEVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred cccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999985 999999999999999999998433334789999999999999999999999999998765433322
Q ss_pred cccceeE--eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 260 HKGQELV--TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 260 ~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
..+.... .......+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 2221111 0011235567888999977778888899999999999988877664
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=3.1e-19 Score=138.82 Aligned_cols=283 Identities=13% Similarity=0.179 Sum_probs=200.1
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCC----CCCeEEEEEcc--CCCcc--cccCCCCCeeeEEeccCCC----
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTT----GSGSVHLYNLW--SSTPL--HNIPVPEPVAPLATTADGS---- 96 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~d~~v~vw~~~--~~~~~--~~~~~~~~v~~~~~~~~~~---- 96 (387)
+.+..+.. .-++.++.|+.... ..-+++.|+ ..+.|.+-.+. +++.+ ..+.|+-+++.+.|.|+..
T Consensus 36 ~eiy~Y~a-p~~lya~~Ws~~~~-~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 36 KEIYTYNA-PWPLYAMNWSVRPD-KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred ceEEEecC-CCceeeeccccCCC-cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 34445543 33478888883110 111122222 34666666553 34333 3467889999999999763
Q ss_pred -EEEEecCCCcEEEEeCCC--Cce--eEEc-----cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 97 -YLFTGGLSGNVYAISVPK--GDI--LRSF-----SAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 97 -~l~~~~~dg~i~i~d~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+||+.+ ..+++|.+.. .+. ...+ ..+..++++..|+. +.+++.+++-|-+..+||+...
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~-------- 183 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG-------- 183 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------
Confidence 565543 4699999863 221 1111 24567899999988 7789999999999999999331
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---c-CCceeEEEeCCCC-CeEEEE
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---F-PCAIMGLALDPTE-TDFFAA 240 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-~~~v~~~~~~~~~-~~l~~~ 240 (387)
........+.+|...|..++|...+ .+.|++.+.||.+|+||++..+.-..+. . ..+...++|++.. +++++-
T Consensus 184 -~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 184 -VSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred -cccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 1233456788999999999999854 5899999999999999999877655543 2 4578899999866 566665
Q ss_pred cc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccE------EEEee
Q 035621 241 GS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQV------VMVLK 312 (387)
Q Consensus 241 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~------~~~~~ 312 (387)
.. ...|.+.|++. .......+.+|.+.|+.++|.|.. ..|++++.|..+.+||+...-. +..+.
T Consensus 262 ~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~ 333 (364)
T KOG0290|consen 262 AMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT 333 (364)
T ss_pred hcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh
Confidence 54 56799999997 445555667999999999999964 5899999999999999976322 22222
Q ss_pred cccCCCceeEEEEecCCCceeeE
Q 035621 313 NELAGSISEMVIATGIGGSRGCG 335 (387)
Q Consensus 313 ~~~~~~v~~~~~~~~~~~~~~~~ 335 (387)
..++|+.+.+++..++...+.
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred --ccceeeeeeecccCCCEEEEE
Confidence 456899999998888877554
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=1.1e-19 Score=160.38 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=191.2
Q ss_pred CcEEEEeCCCC-ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--cc-----ccCCCCCeeeE
Q 035621 18 GPITAYNPSSG-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LH-----NIPVPEPVAPL 89 (387)
Q Consensus 18 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~-----~~~~~~~v~~~ 89 (387)
+.+.||++... .+...+. -..+|.++.|+|. ....++.|..+|+|.+||+..+.. .. ...|..++..+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47999999876 3333343 5667999999983 334455599999999999987754 22 23377899999
Q ss_pred EeccCCC--EEEEecCCCcEEEEeCCCCcee------EEcc------CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 035621 90 ATTADGS--YLFTGGLSGNVYAISVPKGDIL------RSFS------AHDKPVSCLKISP-DGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 90 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 154 (387)
.|..+.. -+++++.||.|..|+++.-... .... .-...++++.|.+ +...+++|+.+|.|.-=+-
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9987544 4999999999999987543221 0011 1134688999988 5668999999998865222
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDP 232 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~ 232 (387)
...... .....+....+..|.++|.++.++|-. ...+++++ |.+++||... ...++..+. ....+++++|||
T Consensus 378 ~g~~~~----~~~~~~~~~~~~~h~g~v~~v~~nPF~-~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 378 KGYTPA----PEVSYKGHSTFITHIGPVYAVSRNPFY-PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred cCCccc----ccccccccccccccCcceEeeecCCCc-cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence 111000 001123345667889999999999987 34555555 9999999987 666666665 456699999999
Q ss_pred CCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 233 TET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 233 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
... .++++..+|.+.+||+....... ......+....+.+.|++.|+.|++|...|.+++|++...
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~~P-------v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDEEP-------VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCceEEEEEcCCCceehhhhhccccCC-------cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 875 55666779999999998743221 1111223556778888999999999999999999998643
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=4.4e-20 Score=143.38 Aligned_cols=263 Identities=16% Similarity=0.173 Sum_probs=181.4
Q ss_pred cccCC-CcEEEeeCCC-------CcEEEEeCCCC---------ceeEecc-CCCCCceeEEEcCccceeeeccccCCCCC
Q 035621 3 HHLPC-NEVILTSSPE-------GPITAYNPSSG---------AILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSG 64 (387)
Q Consensus 3 ~~s~~-~~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 64 (387)
+-+|- .++|+++..+ ..+.||.+... +.+..+. .+-+.|.|+.|.|+..-+++ -.|.
T Consensus 70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas-----m~dn 144 (370)
T KOG1007|consen 70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS-----MDDN 144 (370)
T ss_pred hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE-----eccC
Confidence 34563 4566665432 23788987532 3334443 45668999999996655553 3589
Q ss_pred eEEEEEccCCCc-ccccC------CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc
Q 035621 65 SVHLYNLWSSTP-LHNIP------VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKIS 134 (387)
Q Consensus 65 ~v~vw~~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~ 134 (387)
.|.+|+++.+.. ...+. +....++-+|+| +++.+++. .|+++..||+++.++...++ +|...|..+.|+
T Consensus 145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 999999987755 33332 334577888998 77777776 58899999999888777665 788899999999
Q ss_pred CCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 135 PDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 135 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
|+.+ +|++++.||.|++||.++ ...+++.+.+|...|.++.|.|.. .+++++++.|..|.+|....-
T Consensus 224 pnkq~~lvt~gDdgyvriWD~R~-----------tk~pv~el~~HsHWvW~VRfn~~h-dqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 224 PNKQHILVTCGDDGYVRIWDTRK-----------TKFPVQELPGHSHWVWAVRFNPEH-DQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred CCceEEEEEcCCCccEEEEeccC-----------CCccccccCCCceEEEEEEecCcc-ceEEEecCCCceeEEEecccc
Confidence 9766 788999999999999974 667889999999999999999987 589999999999999987643
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA 292 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~ 292 (387)
.....+........ .++. | ..++.. .-.......+..|...|.+++||.-.. .||+-+
T Consensus 292 SSE~qi~~~~dese---~e~~--------d---------seer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 292 SSEQQIEFEDDESE---SEDE--------D---------SEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred cccccccccccccc---Ccch--------h---------hHHhcc-cccccccccccccccceEEEeeccCCCeeEEEec
Confidence 32222221110000 0000 0 000000 001122233457999999999986555 667889
Q ss_pred CCCcEEEEECCC
Q 035621 293 EDGSVYIWEIEK 304 (387)
Q Consensus 293 ~dg~i~iwd~~~ 304 (387)
.||.+.|=.+..
T Consensus 351 YDGRviIs~V~r 362 (370)
T KOG1007|consen 351 YDGRVIISSVPR 362 (370)
T ss_pred cCceEEeecCCh
Confidence 999998866553
No 175
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=4e-21 Score=158.35 Aligned_cols=271 Identities=18% Similarity=0.182 Sum_probs=218.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
+.++.+|+.|+.|+..|.|..+|..++++..++. -...|.++.|..+..+.+ ......+.||| ..|..++.++
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~A-----VAQK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFA-----VAQKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHH-----hhhhceEEEec-CCCcEEeehh
Confidence 4578899999999999999999999999998886 345589999987555444 56788999999 4788888888
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+..+-+|...|+|.+|..
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP------- 280 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP------- 280 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC-------
Confidence 8899999999999999999999999999999999999999888899999999999999999999999999987
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
....++..+..|.++|.+|++.+++ ++++|.+.|..++|||++....+.++..+.+...+++|..| +++.+
T Consensus 281 -----~skePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~ 351 (545)
T KOG1272|consen 281 -----NSKEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALS 351 (545)
T ss_pred -----CCcchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeee
Confidence 5677888888999999999999885 99999999999999999999888888778888889998765 44555
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
....+.+|.-...... ............++|..+.|.|-...|-.|-..|.-.|
T Consensus 352 ~G~~v~iw~d~~~~s~----~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSG----HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cCCeeeeehhhhcCCC----CCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 5567888853321110 00001111122458999999997666666655554333
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=3.7e-18 Score=147.31 Aligned_cols=274 Identities=14% Similarity=0.178 Sum_probs=176.3
Q ss_pred EEeeCCCCcEEEEeCCC-Cc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCc--ccccCCCC
Q 035621 11 ILTSSPEGPITAYNPSS-GA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STP--LHNIPVPE 84 (387)
Q Consensus 11 l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~--~~~~~~~~ 84 (387)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|++..+.. ++..++.|.+|+++. ++. ........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv---~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYV---GVRPEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEE---EECCCCcEEEEEECCCCceEEeeeecCCC
Confidence 44456789999999964 43 445554 3455778999996543321 134678999999963 332 23333445
Q ss_pred CeeeEEeccCCCEEEEecC-CCcEEEEeCCC-C---ceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCccc
Q 035621 85 PVAPLATTADGSYLFTGGL-SGNVYAISVPK-G---DILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLV 158 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 158 (387)
....++++|+++++++++. ++.|.+|++.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 6778999999999888764 78999999864 3 2223332 234567889999999886555 56999999994311
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCC--Cc--EEEEEe-cC------Ccee
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLN--GT--HLSTVT-FP------CAIM 226 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~-~~------~~v~ 226 (387)
... .......... .......++|+|++ ++++++.. +++|.+|++.. ++ .+..+. .+ ....
T Consensus 160 ~l~-----~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 160 HLV-----AQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred ccc-----ccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 000 0000001111 12345678998875 77766665 89999999973 32 233332 11 1234
Q ss_pred EEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC-CCcEEEEECC
Q 035621 227 GLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIE 303 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 303 (387)
.+.++|++++++++.. ++.|.+|++....... .+...... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----SFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----EEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6889999999999865 7899999996532110 11111111 124567899999999997765 8999999874
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.4e-17 Score=149.72 Aligned_cols=275 Identities=24% Similarity=0.425 Sum_probs=210.8
Q ss_pred ccccCCCcEEEeeCC-CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-c
Q 035621 2 LHHLPCNEVILTSSP-EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-N 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~ 79 (387)
++|+|++..+++++. |+.+++|+..++..+..+.+|...|.+++|+|+.. ..+++++.|+.+++||...+.... .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG---LLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc---eEEEEecCCCcEEEEECCCCcEEeee
Confidence 579999998888885 99999999998889999999999999999998654 122225899999999988776666 3
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
+. +.... ...|++++.++++++.++.+++|+...... ...+..|...+.++.|+|++..+++++.|+.+.+||..
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 314 (466)
T COG2319 238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE-- 314 (466)
T ss_pred cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC--
Confidence 44 33443 338999998899999999999999987664 44446788999999999988888889999999999883
Q ss_pred cccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 158 VDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
........ ..|...+..+.+ + .++..++.+ ..|+.+.+|++..............+..+.+.+ .
T Consensus 315 ----------~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 381 (466)
T COG2319 315 ----------TGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D 381 (466)
T ss_pred ----------CCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence 33333333 367778899988 5 322445555 678999999999887333333344488999999 6
Q ss_pred CeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 235 TDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 235 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
..+.. +..++.+.+|+...... ..... .+...+....+++++..+++++.++.+++|+..+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSL--------LRNLD-GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCee--------eeecc-CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 44444 57899999999987322 11111 1117889999999999999999999999999998
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.1e-18 Score=135.76 Aligned_cols=271 Identities=13% Similarity=0.140 Sum_probs=190.0
Q ss_pred CcEEEeeC----CCCcEEEEeCC--CCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--c--
Q 035621 8 NEVILTSS----PEGPITAYNPS--SGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--P-- 76 (387)
Q Consensus 8 ~~~l~~~~----~dg~i~iwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~-- 76 (387)
+.+||.|+ ..+.|.|-.+. +++.+..- ..|.-+++.+.|.|+..-....+. ++.+..+++|.+...+ .
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL-ATs~D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL-ATSSDFLRLWRIGDEESRVEL 137 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh-hcccCeEEEEeccCcCCceeh
Confidence 35788887 34567765543 44443322 358899999999996532222222 3345689999986321 1
Q ss_pred cc------ccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce---eEEccCCCCCeEEEEEcCCC-CEEEEEeC
Q 035621 77 LH------NIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI---LRSFSAHDKPVSCLKISPDG-SLLISGGD 145 (387)
Q Consensus 77 ~~------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 145 (387)
.. .-++..+++++.|+. +-+++.+.+-|-+..|||++++.. ...+-+|...|..++|...+ +.+++.+.
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 11 112456899999987 678999999999999999998733 45667899999999999855 48899999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCC-cEEEEEe-cC
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNG-THLSTVT-FP 222 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~-~~~~~~~-~~ 222 (387)
||++++||++.+ .....+.+-.....+...++|++.. .+++++-..| ..|.|.|++.. .++..++ |.
T Consensus 218 DGSvRmFDLR~l---------eHSTIIYE~p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 218 DGSVRMFDLRSL---------EHSTIIYEDPSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred CCcEEEEEeccc---------ccceEEecCCCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 999999999765 2222333333335677788887764 5777776655 57999999864 4555565 88
Q ss_pred CceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeC
Q 035621 223 CAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAE 293 (387)
Q Consensus 223 ~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~ 293 (387)
..|+.++|.|.. ..|++++.|....+||+....+.... .++... .-.+.|+.+.|++ .+.+|+.+..
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~--dPilay--~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE--DPILAY--TAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCC--Cchhhh--hccceeeeeeecccCCCEEEEEec
Confidence 999999999975 67899999999999999875542111 112221 3567899999996 4567777643
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=141.38 Aligned_cols=254 Identities=15% Similarity=0.146 Sum_probs=184.2
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
+...+++|.+.|+++.|..+.. +.++...|.|++|++++......+. +...|+.+.-.|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-----L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-----LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-----hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4556778999999999987443 5558999999999999988877776 4567888988887 467788899999
Q ss_pred EEEeCCCCceeEE--------------c---------------------------------------cCCCCCeEEEEEc
Q 035621 108 YAISVPKGDILRS--------------F---------------------------------------SAHDKPVSCLKIS 134 (387)
Q Consensus 108 ~i~d~~~~~~~~~--------------~---------------------------------------~~~~~~v~~~~~~ 134 (387)
.+|++..+..+.. + .+..+.+.|..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9999855221100 0 0012334444432
Q ss_pred C-CCC--EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 135 P-DGS--LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 135 ~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
. ++. ++++|.++|.+.+||+..... ........+.......|..+|.++.+.+.. +.=++|+.+..+..|++.
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSLN 235 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhh--cCCcCCCccccceeeeec
Confidence 2 222 567888999999999943200 000112224445556799999999998664 455677888889999886
Q ss_pred CC--cEE--EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 212 NG--THL--STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 212 ~~--~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
.. .+. ..+. .+..+..+.+-||++.+++++.|+.|++|..++. .....+.-|.+.|++++|+|+..
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCCc
Confidence 43 222 2222 3457889999999999999999999999999983 33444567999999999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 035621 287 NLVSAAEDGSVYIWEI 302 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~ 302 (387)
.+|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=6.2e-20 Score=140.73 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=171.0
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH---- 78 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~---- 78 (387)
|-.++ +|.+|...|.|++|++++......+. .|...|+.+...|+.. +.+-+.|+.+.+|++..+..+.
T Consensus 22 fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-----l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 22 FQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-----LDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred hccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-----hhhcCCCceEEEEEccCcceEEEeee
Confidence 33344 58899999999999999998888887 5677799888888433 3346899999999886411100
Q ss_pred -----------------------ccC---------------------------CCCCeeeEEecc-CCC--EEEEecCCC
Q 035621 79 -----------------------NIP---------------------------VPEPVAPLATTA-DGS--YLFTGGLSG 105 (387)
Q Consensus 79 -----------------------~~~---------------------------~~~~v~~~~~~~-~~~--~l~~~~~dg 105 (387)
.+. ..+.+.|..+.. ++. ++++|..+|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 000 001233333222 222 567788999
Q ss_pred cEEEEeCCCCce----------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621 106 NVYAISVPKGDI----------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF 175 (387)
Q Consensus 106 ~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 175 (387)
.+.+||+.++.. +.....|..+|.++.|.+.-..=++|+.+..+..|.+.... ..-......
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~--------gslq~~~e~ 247 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST--------GSLQIRKEI 247 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc--------CcccccceE
Confidence 999999988733 33445689999999999876677888888899999884311 011111222
Q ss_pred eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 176 VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
.-..-.|..+.+.|++ ++++|+++|+.||+|..++..++..++ |...|++++|+|+...+++++.|+.|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3334567778888885 999999999999999999999999988 7789999999999999999999999999986
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=150.87 Aligned_cols=206 Identities=17% Similarity=0.300 Sum_probs=160.0
Q ss_pred ccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc
Q 035621 56 HISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS 134 (387)
Q Consensus 56 ~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 134 (387)
.++.++.||.+.+.+- .++..+.+. |.+.+.+-.|+|||.-|++++.||.|++|. ++|-+..++.....+|.|++|.
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 3445788999998874 444444444 778899999999999999999999999998 5676666666667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
|+.+.++.+.. +.+.+=.+ .....+..+++|.+-|.++.|++.. +++++|++|-..++||-....
T Consensus 155 p~S~~vl~c~g-~h~~IKpL------------~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 155 PNSNSIVFCQG-GHISIKPL------------AANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred CCCCceEEecC-CeEEEeec------------ccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCcc
Confidence 98776555433 45555544 3445567789999999999999886 899999999999999976544
Q ss_pred EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621 215 HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED 294 (387)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 294 (387)
....-.+..+|++++|+|+ ..++.++.+ ..+ +.....+.|..++||+||..+++|+..
T Consensus 220 Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------------------FSSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred cccCChhccceeeeeeccc-cceeeeeee-eee--------------------ecCCCccceEEEEEcCCCceeeccccC
Confidence 4445558899999999999 566655532 111 223567889999999999999999999
Q ss_pred CcEEEE
Q 035621 295 GSVYIW 300 (387)
Q Consensus 295 g~i~iw 300 (387)
|.+.+=
T Consensus 278 G~v~~A 283 (737)
T KOG1524|consen 278 GQLIVA 283 (737)
T ss_pred ceEEEe
Confidence 987653
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.9e-19 Score=145.60 Aligned_cols=207 Identities=13% Similarity=0.187 Sum_probs=159.7
Q ss_pred EccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621 120 SFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS 198 (387)
Q Consensus 120 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 198 (387)
.+.+|+++|..++|+| +...+++|++|.+|.+|.+....... .-..++..+.+|+..|.-++|+|.. .+.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~L~gH~rrVg~V~wHPtA-~NVLls 149 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVELYGHQRRVGLVQWHPTA-PNVLLS 149 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEEEeecceeEEEEeecccc-hhhHhh
Confidence 4568999999999999 66789999999999999995432221 2336788899999999999999986 689999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEE
Q 035621 199 CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVV 277 (387)
Q Consensus 199 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 277 (387)
++.|.+|.+||+.+++.+.++.|+..|.++.|+.+|.++++.+.|..|++||.+.+.... ...+|.+ .-.
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---------e~~~heG~k~~ 220 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---------EGVAHEGAKPA 220 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---------ecccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999844322 2235554 345
Q ss_pred EEEEecCCCEEEEEe---CCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCceeeEEEecCCCC
Q 035621 278 SVMMMNEGKNLVSAA---EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAG 343 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 343 (387)
.+.|-.+|..+.||- .+..+-+||..+-+.-..+.. -..-+++.|.--.+|...+++|..|+..
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcc
Confidence 666778888555553 578899999876443322221 1133456666666666667777766653
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4e-18 Score=151.40 Aligned_cols=309 Identities=13% Similarity=0.178 Sum_probs=207.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC--C--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS--G--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
.++||+++++|+|..||.|.+|.--. + .....+.=|..+|.+++|+++ +.++.+|+..+.+.+|.+.+++..
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~----G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD----GAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC----CceEeecccceEEEEEeecCCCcc
Confidence 57899999999999999999997432 1 224455668889999999994 455666999999999999999844
Q ss_pred cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-----------CCCCeEEEEEcCCCCEEEEEeCC
Q 035621 78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-----------HDKPVSCLKISPDGSLLISGGDD 146 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d 146 (387)
..-+...+|..+.++||+.+.+....|..|.+....+.+...++.+ ..+-.+.++++|..+.++-.+..
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 4445778999999999999999999999999998866654444332 13446778999977788888999
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEeC--------C--CcEEEEeC
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCSM--------D--CTCKFWRL 210 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--------d--~~i~iwd~ 210 (387)
|.|.+||+.+..... ...+..... +.-.++.++.+.. +++++|.-. | -.+++|-.
T Consensus 367 g~vQ~ydl~td~~i~-------~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 367 GHVQFYDLYTDSTIY-------KLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred ceEEEEeccccceee-------eEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 999999994321110 001111111 2223455554444 578877642 3 35788876
Q ss_pred CCCc----EEEEEe--cCCceeEEEeC-CCCC-eEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEE
Q 035621 211 LNGT----HLSTVT--FPCAIMGLALD-PTET-DFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 211 ~~~~----~~~~~~--~~~~v~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
.... ....+. |...+...++. |... .+++++.||.+++|-+....... ......+...-.-|..++++++|
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 5443 233333 44444444443 3333 78999999999999985533221 11233344333347889999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 282 MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 282 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
+.||..|+. +.|++|.+||..+...+....+....++..+++
T Consensus 518 s~dGslla~-s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~ 559 (792)
T KOG1963|consen 518 SQDGSLLAV-SFDDTITIWDYDTKNELLCTEGSRNWPIAELLF 559 (792)
T ss_pred cCCCcEEEE-ecCCEEEEecCCChhhhhccccccccchHhHhh
Confidence 999976655 478899999999843333333333444444433
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.2e-18 Score=139.49 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=170.6
Q ss_pred CCCCCeEEEEEc-cCCCcccccC----CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCC
Q 035621 60 TTGSGSVHLYNL-WSSTPLHNIP----VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDK 126 (387)
Q Consensus 60 ~~~d~~v~vw~~-~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~ 126 (387)
++..|...+.-+ ++|+.-..+. |..+|..++|.| +.+.||+|+.|.+|.||++..+ +++..+.+|..
T Consensus 53 asgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r 132 (472)
T KOG0303|consen 53 ASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR 132 (472)
T ss_pred cCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce
Confidence 444455555444 2343333332 778999999999 5678999999999999999765 45677889999
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 127 PVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 127 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
.|-.++|+|. .+.|++++.|..|.+|++ .++..+.++. |...|.++.|+.++ .+|++.+.|..|
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv------------~tgeali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkv 197 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNV------------GTGEALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKV 197 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEec------------cCCceeeecC-CCCeEEEEEeccCC--ceeeeeccccee
Confidence 9999999994 568999999999999999 6666777766 99999999998875 999999999999
Q ss_pred EEEeCCCCcEEEEEe-c-CCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621 206 KFWRLLNGTHLSTVT-F-PCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280 (387)
Q Consensus 206 ~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 280 (387)
+|||.++++.+..-. | ......+.|-.++..+-+|.. +..+-+||...-... ..... + ..++.|.---
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----~~~~e-l-DtSnGvl~PF 270 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-----IALQE-L-DTSNGVLLPF 270 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----ceeEE-e-ccCCceEEee
Confidence 999999999887764 3 234566778888885555533 778999998763211 11111 1 3455666667
Q ss_pred EecCCCEEE-EEeCCCcEEEEECCCccE
Q 035621 281 MMNEGKNLV-SAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 281 ~s~~~~~l~-s~~~dg~i~iwd~~~~~~ 307 (387)
|.+|.+.+. +|-.|+.||-|.+.+..+
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 888888766 555799999999988763
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=5.2e-18 Score=146.40 Aligned_cols=225 Identities=13% Similarity=0.156 Sum_probs=170.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+.||+++|+|+.|..|.+|+.+-.. +-.+ .|.+.|.|+.|+| ....+++++- ...-+|..+.. .+...+
T Consensus 59 VAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP----~~h~LasCsL-sdFglWS~~qK-~V~K~k 130 (1081)
T KOG1538|consen 59 VAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNP----ITHQLASCSL-SDFGLWSPEQK-SVSKHK 130 (1081)
T ss_pred EEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCc----hHHHhhhcch-hhccccChhhh-hHHhhh
Confidence 6899999999999999999999964222 2223 4999999999999 4444444443 34667876433 333344
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEe
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDG-----SLLISGGDDGVIATVP 153 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd 153 (387)
....+.+++|..||.+++.|-.+|+|.+-+- +++....+. +.+.+|.+++|+|.. ..+++.....++.++.
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence 5567899999999999999999999999874 454433333 467899999999953 4788888888888887
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP 232 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 232 (387)
+ .+..+..-..-.-.-.|+.+.+++ .+++.|+.|+.+++|- +.|-.+.++. ....|..++..|
T Consensus 210 L-------------sG~~Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 210 L-------------SGKQIGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred e-------------cceeecccccCCCCchhheeccCC--cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 7 223333222233344578888875 9999999999999995 6676676665 677899999999
Q ss_pred CCCeEEEEccCCcEEEEec
Q 035621 233 TETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~ 251 (387)
++++++.|+.||+|..|++
T Consensus 274 NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCceEEEEEccCeeehhhh
Confidence 9999999999999988876
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.7e-19 Score=144.73 Aligned_cols=197 Identities=20% Similarity=0.166 Sum_probs=147.8
Q ss_pred eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 035621 87 APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKN 166 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 166 (387)
.+++|+++|..+++|+.||.+++|+.++...+.....|.+.|.++.|+|||++|++.+.| ..++|+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--------- 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--------- 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC---------
Confidence 679999999999999999999999998888888888899999999999999999999999 8999999543
Q ss_pred CCccceEeee--ccCCCeEEEEEeeCCCCc--eE-EEEeCCCcEEEEeCCCCcE---E---EEEecCCceeEEEeCCCCC
Q 035621 167 PDDLMLQKFV--AHNDSVTAITCCIGSFNS--II-ISCSMDCTCKFWRLLNGTH---L---STVTFPCAIMGLALDPTET 235 (387)
Q Consensus 167 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~--~l-~s~~~d~~i~iwd~~~~~~---~---~~~~~~~~v~~~~~~~~~~ 235 (387)
..+.... ........+.|..++.+. ++ +....-+.|+.||+...+. + +.+.....|.+++.+++|+
T Consensus 218 ---~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 218 ---AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred ---chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence 2222211 111223344444442111 22 2222345566666543221 1 1112345899999999999
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+++.|+.||.|.+++... .+........|...|+.+.|+||.+++++-+.|....+..+.-
T Consensus 295 f~AlGT~dGsVai~~~~~--------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKS--------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeccCCcEEEEEece--------eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999987 3444445568999999999999999999999999888887665
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.7e-18 Score=129.05 Aligned_cols=230 Identities=16% Similarity=0.152 Sum_probs=162.5
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCC---------C-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPK---------G-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
.|..-+++|.+++|++|..+|.|.++.+.+ + ..+...++|.++++.++|. ..+|++++. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 466678999999999999999999998843 1 2344567999999999997 346666654 99999987
Q ss_pred CcccccCC-CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC
Q 035621 155 FQLVDEHT-DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP 232 (387)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 232 (387)
++..+... ....+...+.+.-...-..|+++...|.. +-++.++.|+.++-||+++|+..+.++ |...+.++.-..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 55433110 00001111111111122467888888876 455556689999999999999999998 778899999877
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
....+++|+.||++++||.+++..........-...+..|- ..|.+++.+ ..+|++|+. ..+.+|++.+.++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEE
Confidence 77899999999999999999976655443333333333443 457777764 458888754 47999999999999888
Q ss_pred ecccCCCceeEEE
Q 035621 312 KNELAGSISEMVI 324 (387)
Q Consensus 312 ~~~~~~~v~~~~~ 324 (387)
.-. +++..+.|
T Consensus 244 pip--a~v~~v~F 254 (325)
T KOG0649|consen 244 PIP--ARVHLVDF 254 (325)
T ss_pred ecc--cceeEeee
Confidence 643 34544433
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.9e-19 Score=150.91 Aligned_cols=241 Identities=17% Similarity=0.217 Sum_probs=174.7
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC--------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK--------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
|-..+..+.|.|....|++++.||.|.+|++.. -+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 446688899999999999999999999999932 256788999999999999999999999999999999998
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEe
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLAL 230 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~ 230 (387)
+... ...............+.+|.+.++.++++... ..|++++.||+++.|+.....+ .+|. ......++.+
T Consensus 373 ~p~n--~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 373 LPPN--QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred cCCC--CCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 8522 11112222334556788999999999999886 7799999999999999877766 3333 2345566666
Q ss_pred CCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 231 DPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 231 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
-... .+.++...-+.-.+++................. ......+..+.+.|.+.+.+++..|+.|+++|..+++++.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--ccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 5443 233333333333344444322222111111000 0122457788899999999999999999999999999999
Q ss_pred EeecccCCCceeEEEEecCCC
Q 035621 310 VLKNELAGSISEMVIATGIGG 330 (387)
Q Consensus 310 ~~~~~~~~~v~~~~~~~~~~~ 330 (387)
....|.. .++++++.+...-
T Consensus 526 s~~a~~~-svtslai~~ng~~ 545 (577)
T KOG0642|consen 526 SMVAHKD-SVTSLAIDPNGPY 545 (577)
T ss_pred heeeccc-eecceeecCCCce
Confidence 9988865 8999988776543
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=134.73 Aligned_cols=227 Identities=17% Similarity=0.137 Sum_probs=165.7
Q ss_pred CCCeEEEEEccCCCcc---cccC-CCCCeeeEEeccC-CCEEEEecCC-------CcEEEEeCCCC---------ceeEE
Q 035621 62 GSGSVHLYNLWSSTPL---HNIP-VPEPVAPLATTAD-GSYLFTGGLS-------GNVYAISVPKG---------DILRS 120 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~---~~~~-~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~i~d~~~~---------~~~~~ 120 (387)
.|+.|.+.+++...-. ..+. +.+.|..++-+|- ...|+++..+ ..+.||.++.. +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 5688888887654322 2233 5588999999994 4555555432 24789988543 23333
Q ss_pred cc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE
Q 035621 121 FS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 121 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 199 (387)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++....... .......-..+....++-+|+|..+++.+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~v------aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIV------AEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchh------eeecccccccccceecccccCCCCccceEEEe
Confidence 43 3456899999999999888776 7899999994321100 00011111235667888899998878888776
Q ss_pred eCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 200 SMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 200 ~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
.|+++..||+++.++...+. |...+..+.|+|+.. +|++++.||.|++||.+. ...++..+.+|...|
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~--------tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK--------TKFPVQELPGHSHWV 261 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC--------CCccccccCCCceEE
Confidence 48999999999998888887 778899999999875 467788899999999997 445555667899999
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCC
Q 035621 277 VSVMMMNE-GKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 277 ~~~~~s~~-~~~l~s~~~dg~i~iwd~~~ 304 (387)
+++.|+|. .++|++|+.|..|.+|...+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999985 46788999999999997644
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=3.7e-16 Score=134.54 Aligned_cols=287 Identities=12% Similarity=0.135 Sum_probs=180.4
Q ss_pred cEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621 9 EVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA 87 (387)
Q Consensus 9 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~ 87 (387)
+++ ++-..+|.|.|.|..+.+.+.++.........+.++|++.+... ++.||.|.++|+.+.+.+.+++......
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv----~~rdg~vsviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYV----ANRDGTVSVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEE----EETTSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEE----EcCCCeEEEEECCcccEEEEEecCCCcc
Confidence 344 45667899999999999999999866554455788996644332 5679999999999999999999888899
Q ss_pred eEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccCC-------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCccc
Q 035621 88 PLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSAH-------DKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLV 158 (387)
Q Consensus 88 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 158 (387)
.+++++||++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....++..-. .+.|.+.|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~- 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP- 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-
Confidence 999999999998775 6789999999999998877532 346778888888875555544 578888787331
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcE----------------------
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTH---------------------- 215 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~---------------------- 215 (387)
..................|.|++ ++++. ...+..|.++|..+++.
T Consensus 161 ----------~~~~~~~i~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 161 ----------KNLKVTTIKVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp ----------SCEEEEEEE--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred ----------cccceeeecccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 11111222233344556666653 54443 33455666666655443
Q ss_pred ---------------------------------EEEEecCCceeEEEeCCCCCeEEEE----ccCCcEEEEecccccccc
Q 035621 216 ---------------------------------LSTVTFPCAIMGLALDPTETDFFAA----GSDGLIYKGLLKYQSRQQ 258 (387)
Q Consensus 216 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~ 258 (387)
++++...+...-+..+|+++++++. ...+.|.++|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT----
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc----
Confidence 3333322233557779999999998 44689999999883
Q ss_pred ccccceeEeecccccccEEEEEEecCCCEEEEEeC--CCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE--DGSVYIWEIEKRQVVMVLKNELAGSISEMV 323 (387)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 323 (387)
.....+.......+..+.|+++|+.+..+.. ++.|.+||..+.+++..++. ..+++..
T Consensus 305 ----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~---~tP~G~f 364 (369)
T PF02239_consen 305 ----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV---PTPTGKF 364 (369)
T ss_dssp ----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-----SEEEEE
T ss_pred ----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe---eCCCeEe
Confidence 2222222223335899999999997665443 34699999999999999982 2455543
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=9.7e-19 Score=147.02 Aligned_cols=207 Identities=15% Similarity=0.161 Sum_probs=166.8
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-CCCCCee
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-PVPEPVA 87 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~~~~~v~ 87 (387)
..|+.++.||.+.|.+ +.++.......|.+.+.+-.|+|++ ..+++++.||.|++|.- +|-...++ +...+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG----tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG----AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC----ceeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence 5788889999999998 5788888999999999999999954 45566999999999984 45444333 4667899
Q ss_pred eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
|++|.|+.+.++.+. .+.+.+=-+.....+-.+++|.+-|.++.|++..+++++|++|-..++||-
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~------------- 215 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA------------- 215 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-------------
Confidence 999999877666553 456777777766677788999999999999999999999999999999997
Q ss_pred CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 247 (387)
.+..+..-..|..+|++++|.|+ ..++.++. .++++=. ...+.|..++|++||..+++|+..|.+.
T Consensus 216 ~G~~Lf~S~~~ey~ITSva~npd---~~~~v~S~-nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 216 QGANLFTSAAEEYAITSVAFNPE---KDYLLWSY-NTARFSS----------PRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred cCcccccCChhccceeeeeeccc---cceeeeee-eeeeecC----------CCccceEEEEEcCCCceeeccccCceEE
Confidence 56677788899999999999998 45555553 3344111 1346788999999999999999998876
Q ss_pred EE
Q 035621 248 KG 249 (387)
Q Consensus 248 i~ 249 (387)
+-
T Consensus 282 ~A 283 (737)
T KOG1524|consen 282 VA 283 (737)
T ss_pred Ee
Confidence 53
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=138.37 Aligned_cols=200 Identities=15% Similarity=0.213 Sum_probs=154.9
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621 96 SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||+|.. ......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~----------~e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ----------AESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc----------hhhhhe
Confidence 5688888999999999999999999999999999999977 4568999999999999999652 333444
Q ss_pred eeeccC-CCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCcE-EEEEe--cCCceeEEEeCCCC-CeEEEEccCC
Q 035621 174 KFVAHN-DSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGTH-LSTVT--FPCAIMGLALDPTE-TDFFAAGSDG 244 (387)
Q Consensus 174 ~~~~~~-~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg 244 (387)
.+..+. .+..+++. +..++++++|.. +-.+.+||++..+. +..+. |...|+++.|+|.. ++|++|+.||
T Consensus 111 ~~~~~~~~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred eccCCCCCcceEeec--cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 455555 34445443 223477777754 56799999998876 66654 88999999999976 7888999999
Q ss_pred cEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
.|.+||++.... ...+.... .|...|..+.|..++ +.|.+-+..++..+|+++.+.....+..
T Consensus 189 LvnlfD~~~d~E-----eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 189 LVNLFDTKKDNE-----EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred eEEeeecCCCcc-----hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 999999987521 12222222 477889999998776 4688888899999999999887666543
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=2e-16 Score=124.95 Aligned_cols=234 Identities=13% Similarity=0.162 Sum_probs=167.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCC-----CCeEEEEEccCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTG-----SGSVHLYNLWSS 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~-----d~~v~vw~~~~~ 74 (387)
++|+.|..-++.|..+| .+||+.+.-+...+.+.+.+. +..+-|-.+...+. -|+. -+.|.|||=...
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLV----GGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALV----GGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEe----cCCCCCCCCCceEEEEecccC
Confidence 47888888999988766 899998754432222222222 22232322211111 1222 357999997778
Q ss_pred CcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEEccCC--CCCeEEEEEcCCCCEEEEEe-CCCcEE
Q 035621 75 TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRSFSAH--DKPVSCLKISPDGSLLISGG-DDGVIA 150 (387)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~dg~i~ 150 (387)
+++.++....+|.++.+.++ .|++. ..+.|.+|... +.+.++.+..- ...+.++.-+.+..+|+.-+ .-|.|+
T Consensus 86 ~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 88889999999999999886 45555 46789999987 45666655422 23344444333444555443 569999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCcee
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIM 226 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~ 226 (387)
+-|+... .......+.+|...|.+++...++ .++||+|..|+ |||||..+|..+.++. .+..|.
T Consensus 163 i~dL~~~----------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 163 IVDLAST----------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEEhhhc----------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 9999432 111457788999999999998774 99999999997 7999999999999997 457899
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 255 (387)
+++|+|+..+|++++..|+++++.++...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999999999999999999999998743
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=5.1e-18 Score=137.88 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=176.0
Q ss_pred cccCCCc-EEEeeCCCCcEEEEeCCCCc---------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 3 HHLPCNE-VILTSSPEGPITAYNPSSGA---------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
.|.++.. .|++|+.|..|+||-+..++ .+..+..|...|+++.|+|++.++++ |+.+|.+.+|...
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGDGGEVFLWKQG 95 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCCCceEEEEEec
Confidence 4566654 99999999999999876432 34567889999999999996655554 9999999999876
Q ss_pred CC------Cc----------cccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621 73 SS------TP----------LHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP 135 (387)
Q Consensus 73 ~~------~~----------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 135 (387)
.- .+ .+.. .|.+.+..++|+|++.++++++.|..+++||+..|+....+..|...+..++|.|
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence 11 00 0111 1667899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccc--------CCCCC-------------------------C----------------
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDE--------HTDDK-------------------------N---------------- 166 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~-------------------------~---------------- 166 (387)
-++++++-+.|...+.+.+...... ..... .
T Consensus 176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 9999998888875555443210000 00000 0
Q ss_pred --------------CCccceEeeeccCCCeEEEEEeeCC----------------CCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 167 --------------PDDLMLQKFVAHNDSVTAITCCIGS----------------FNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 167 --------------~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
....+...+.....+...+.++|-. .+..++.++ ...+.+||.++..++
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~ 334 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPL 334 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccce
Confidence 0011111222222333333333210 012344444 457999999998888
Q ss_pred EEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 217 STVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 217 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
.... |-..++.++|+++|..++..+.||...+..+...
T Consensus 335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 7776 6789999999999999999999999888777653
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=156.36 Aligned_cols=274 Identities=15% Similarity=0.215 Sum_probs=207.7
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
.|...|.++++|+.|..++||...++.++....||.+.|+.++.+.+..+ +++++.|..|++|.+.++.++..+.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~----iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTM----IAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhh----hhhcccCceEEEEecCCCchHHHHhc
Confidence 46778999999999999999999999999999999999999999985444 4459999999999999999998776
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE---cc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS---FS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
|.+.|++++|+|-. +.+.||++++||.+-.-.+.. .+ ....-+.++.|..++..+++++.|+.-..|.+...
T Consensus 273 htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 273 HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence 77899999999954 677899999999871111111 01 12345677888888889999999999888866221
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD 236 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 236 (387)
..+...+.-+..+.+. ..+.+++-.+..+.+|++.+|...+... +...+..+.++|-+..
T Consensus 349 ------------------~~~~~~lif~t~ssd~-~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 349 ------------------AWRSNLLIFVTRSSDL-SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ------------------hhhccceEEEeccccc-cccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 1111111112222121 2466777778889999999998887776 6778999999997755
Q ss_pred E-EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 237 F-FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 237 l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+ ..++.||...|||+-.+. +......+| ..+...+||+||..++....-|.++|.....++.....+
T Consensus 410 i~msag~dgst~iwdi~eg~--------pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak 477 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGI--------PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK 477 (1113)
T ss_pred hhhhccCCCceEeeecccCC--------cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence 4 567889999999998743 333333344 456677999999999999888999999887776654443
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=7.9e-18 Score=132.80 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=172.2
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
..++|+|.+|++|...+|++..+..|.||.....+ ..++++.|...|+.+.|+|..+.|++++.|..-++|.....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~- 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG- 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence 35789999999999999999999999999986654 67889999999999999999999999999999999977321
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE-----EEEecCCceeEEEeCCC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL-----STVTFPCAIMGLALDPT 233 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~ 233 (387)
...++...+..++...+++.|+|.. +.|++|+.-..|.||-++...-- ...+..+.|++++|+|+
T Consensus 88 --------~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 88 --------GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred --------CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 4556677778899999999999996 89999999999999987654332 12235688999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccc---------cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQM---------HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+-.+++|+.|+..+++..--...... .+...+........+.+..+.|+|+|..|+-.+.|..+.+=|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99999999999999987532211111 111111122224567899999999999999999999999999877
Q ss_pred cc
Q 035621 305 RQ 306 (387)
Q Consensus 305 ~~ 306 (387)
..
T Consensus 238 p~ 239 (361)
T KOG1523|consen 238 PS 239 (361)
T ss_pred Cc
Confidence 64
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.4e-17 Score=148.06 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=159.3
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCce--eEEccCCCCCeEEEEEcCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDI--LRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~ 136 (387)
.+..|.+||...........+...+...+|+|||+.|+..+.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 3579999998666544434466789999999999999887643 3699999988754 3333333 446899999
Q ss_pred CCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCC-
Q 035621 137 GSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNG- 213 (387)
Q Consensus 137 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~- 213 (387)
|+.|+.++ .+|.+.+|.+.- .......+..+...+....|+|++ +.|+ ++..++...||++...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~-----------~~~~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGA-----------NGGTPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CCEEEEEEecCCcEEEEEEEC-----------CCCCeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence 99888765 688766664310 112344555666778889999985 6555 4445788888876532
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
.....+.+.. ....|+|+|+.++..+.++ +.+||+.++.... +...+ ....+.|+|+|++|+.++.
T Consensus 326 ~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~---------lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 326 GGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV---------LSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE---------ecCCC--CCCCceECCCCCEEEEEEc
Confidence 2223333332 4578999999998887754 6668987643211 11111 2246789999999999999
Q ss_pred CCcEEEEEC--CCccEEEEeecccCCCceeEEEEe
Q 035621 294 DGSVYIWEI--EKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 294 dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
+|.+.+|.+ .+|+.+..+..+ .+.+...+|++
T Consensus 392 ~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp 425 (429)
T PRK01742 392 QGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSP 425 (429)
T ss_pred CCCceEEEEEECCCCceEEccCC-CCCCCCcccCC
Confidence 998888876 357888888755 45666666654
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4e-17 Score=132.40 Aligned_cols=248 Identities=11% Similarity=0.120 Sum_probs=182.9
Q ss_pred eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC------CCcccccC--CCCCeeeEEeccCCCEEEEecCC
Q 035621 33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS------STPLHNIP--VPEPVAPLATTADGSYLFTGGLS 104 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d 104 (387)
.+.+|.+.|+++.|+.+..+++ +|+.|..+++|+++. .+++.... |...|.|++|...+..+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLA----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEe----ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3467999999999999655544 599999999999853 35555554 44789999999999999999999
Q ss_pred CcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 105 GNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
++|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ...............
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~---------~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ---------NPISLVLPANSGKNF 197 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC---------CCCceeeecCCCccc
Confidence 9999999999988877752 34589999999999999999999999999996531 111222222334456
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEe----c---CCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVT----F---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
..+.|+|.. ..+|++.+..+-+.+||.+..+. +.... . .....++.|+|.|..+++--....-.+||+...
T Consensus 198 ~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 198 YTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred eeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 678888875 58899999999999999986432 11111 1 223467899999999988777667777787652
Q ss_pred ccccccccceeEeecccc-------cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 255 SRQQMHKGQELVTLANRH-------DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
... + +...| ...+.+++|..| ..+++|+.+-.|++|.+..
T Consensus 277 R~~-------V--~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 277 RCF-------V--LKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cce-------e--EeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 211 1 11122 234777888765 4599999999999998753
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=2.3e-16 Score=126.98 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=168.2
Q ss_pred EEEeeCCC--CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC----C
Q 035621 10 VILTSSPE--GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV----P 83 (387)
Q Consensus 10 ~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~----~ 83 (387)
++|..+.+ +.+++++.+.+..+..+. ...+|.++.++.++.+.. -...|.|||+.+.+.++++.. +
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~-------Lee~IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVC-------LEESIYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEE-------EcccEEEEecccceeehhhhccCCCc
Confidence 44444333 458999998888888776 566799999998776653 245599999999999988873 2
Q ss_pred CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCccccc
Q 035621 84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV-IATVPIFQLVDE 160 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~ 160 (387)
..+.++++++.+.+++.-+ ..|.|.+||..+-+.+..+..|++++-+++|+++|.+|++++..|+ ||++.+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v------ 203 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV------ 203 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc------
Confidence 3466666666777888643 4689999999999999999999999999999999999999999997 689998
Q ss_pred CCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-----------------------
Q 035621 161 HTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH----------------------- 215 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------------- 215 (387)
+.+..+.+|.... ..|.+++|+|+. ++|++.+..++|++|.+.+...
T Consensus 204 ------~~G~kl~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sy 275 (391)
T KOG2110|consen 204 ------PEGQKLYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSY 275 (391)
T ss_pred ------CCccEeeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhh
Confidence 6777777776543 357789999886 8999999999999998864210
Q ss_pred --------------EEEEe--cCCceeEEEeC--CCCCeEEEEccCCcEEEEeccc
Q 035621 216 --------------LSTVT--FPCAIMGLALD--PTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 216 --------------~~~~~--~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
....+ ....-..+.+. +...++.+++.||.++.|.+..
T Consensus 276 lps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 276 LPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00011 11111223333 4678899999999999998876
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=143.34 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=215.7
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccC--CCEEEEecCCCc
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTAD--GSYLFTGGLSGN 106 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~dg~ 106 (387)
...|..|.+.|+.+.|+.. +..+++++.|..|.+||+..++....+. |...|....|-|. ...+++++.||.
T Consensus 135 ~~kL~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 4567789999999999994 4455569999999999999998887776 5567777778773 467899999999
Q ss_pred EEEEeCCCC-ce--eEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--
Q 035621 107 VYAISVPKG-DI--LRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND-- 180 (387)
Q Consensus 107 i~i~d~~~~-~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 180 (387)
+++=.+... .+ ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++..... .... .-..+..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--------~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--------EKFV-CREADEKER 281 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--------ceee-eeccCCccc
Confidence 998876433 22 34456799999999999954 47899999999999998653221 1111 1222222
Q ss_pred -CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEEe-------cCCceeEEEeCCCCCeEEEEccCCcE
Q 035621 181 -SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTVT-------FPCAIMGLALDPTETDFFAAGSDGLI 246 (387)
Q Consensus 181 -~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i 246 (387)
....++..|.. ...+++++.|..+++||.+.-.. +..+. .+..|++++|+.++.-|.++-.|-.|
T Consensus 282 v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 282 VGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred eeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 45678887774 56899999999999999875332 22221 34579999999999999999999999
Q ss_pred EEEecccccccccc----ccceeEeecccccc--cEEEEEE-ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621 247 YKGLLKYQSRQQMH----KGQELVTLANRHDG--VVVSVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI 319 (387)
Q Consensus 247 ~i~d~~~~~~~~~~----~~~~~~~~~~~~~~--~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 319 (387)
+++.-..+...... ........+++|.. .|..+-| -|...|+++|+.=|.|.||+-.+++.++.+.+... .|
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VV 439 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VV 439 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eE
Confidence 99955443321111 11223333567765 4777765 58889999999999999999999999998887755 77
Q ss_pred eeE--------EEEecCCCceeeEEEec
Q 035621 320 SEM--------VIATGIGGSRGCGVVKT 339 (387)
Q Consensus 320 ~~~--------~~~~~~~~~~~~~~~~~ 339 (387)
+|| +-++|.+..+++|...+
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred eccCCCCCCchhhccCCccceeeecCCc
Confidence 776 55667777788887643
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.4e-16 Score=137.45 Aligned_cols=233 Identities=13% Similarity=0.191 Sum_probs=153.9
Q ss_pred CCCCCeEEEEEccC-CC--cccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCC-CCce--eEEccCCCCCeEEEE
Q 035621 60 TTGSGSVHLYNLWS-ST--PLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVP-KGDI--LRSFSAHDKPVSCLK 132 (387)
Q Consensus 60 ~~~d~~v~vw~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~--~~~~~~~~~~v~~~~ 132 (387)
...++.|.+|++.+ ++ .+..+...+....++++|++++|++++ .++.|.+|++. +++. +.... ..+....++
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 46789999999964 32 445555556788899999999987764 57889999986 3432 22222 334567899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeC
Q 035621 133 ISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRL 210 (387)
Q Consensus 133 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~ 210 (387)
|+|+++++++++. ++.|.+|++.... .....+..+. +......++++|++ +++ ++...++.|.+||+
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g--------~~~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDG--------IPVAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCC--------CCCCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEE
Confidence 9999998888764 7899999983210 0011122222 22345667788875 555 55556799999999
Q ss_pred CCCcEEE-------EEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecc--cccccEEEEE
Q 035621 211 LNGTHLS-------TVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLAN--RHDGVVVSVM 280 (387)
Q Consensus 211 ~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~ 280 (387)
.+...+. .......+..++|+|++++++++.. ++.|.+|++........ ....+..... .+......+.
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE-CVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE-EEEEEecCCCcCCCCccceeEE
Confidence 8643221 2223456788999999999988877 89999999974211100 0011110000 1222345689
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCc
Q 035621 281 MMNEGKNLVSAA-EDGSVYIWEIEKR 305 (387)
Q Consensus 281 ~s~~~~~l~s~~-~dg~i~iwd~~~~ 305 (387)
++|++++++++. .++.|.+|++...
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 999999998885 4789999998654
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.1e-17 Score=146.92 Aligned_cols=240 Identities=13% Similarity=0.008 Sum_probs=160.4
Q ss_pred CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621 17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS 96 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (387)
+..|++||.. |...+.+..|...+....|+|++...+.. .....+..|.+||+.+++.............++|+|||+
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~-s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYV-SFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEE-EecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 4689999975 44456677788889999999976544321 001234579999998876433333344456789999999
Q ss_pred EEEEec-CCCcEE--EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 97 YLFTGG-LSGNVY--AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 97 ~l~~~~-~dg~i~--i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
.|+.+. .+|.+. +||+.+++. ..+..+...+....|+|||+.|+.++ .++...+|++.. .....
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~-----------~~~~~ 328 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA-----------SGGGA 328 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-----------CCCCe
Confidence 888764 577655 456666654 45556677788999999999776554 678888887621 11111
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
..+ .+.. ....|+|++ +.++..+.++ +.+||+.+++...... ........|+|+|++|+.++.++.+.+|.+.
T Consensus 329 ~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 222 2332 346788875 7777777655 6669999887543222 2234567899999999999999988888764
Q ss_pred ccccccccccceeEeecccccccEEEEEEecC
Q 035621 253 YQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
... +... ..+..|.+.+...+|+|-
T Consensus 402 ~~~------G~~~-~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SAD------GRFK-ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECC------CCce-EEccCCCCCCCCcccCCC
Confidence 311 2222 223467778888999874
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=4.4e-17 Score=144.20 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=167.5
Q ss_pred CCeEEEEEccCC-CcccccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce--eEE----ccCCCCCeEEEEEc
Q 035621 63 SGSVHLYNLWSS-TPLHNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI--LRS----FSAHDKPVSCLKIS 134 (387)
Q Consensus 63 d~~v~vw~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~----~~~~~~~v~~~~~~ 134 (387)
++.+.+|++... .+...+..+..|.++.|+| +.++++.|..+|+|.+||++.+.. ... ...|..+++.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 458999999776 6666777889999999999 567888888999999999987754 222 23688999999997
Q ss_pred CCC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-
Q 035621 135 PDG--SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL- 211 (387)
Q Consensus 135 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~- 211 (387)
.+. .-+++++.||.|..|+++....+..............-......++++.|.+.. .+.++.|+.+|.|.--+-.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccC
Confidence 644 449999999999999986654322111111111001111223467889988764 6789999999998873322
Q ss_pred --CCc-----EE-EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 212 --NGT-----HL-STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 212 --~~~-----~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
... .. ....|.++|.++.++|-+..++..+.|-.+++|.-... ..+...+..+...|++++|||
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--------~~Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--------CCcchhhhhccceeeeeEEcC
Confidence 222 11 12237789999999998877777666999999987731 122222335677799999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCccE
Q 035621 284 EGK-NLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 284 ~~~-~l~s~~~dg~i~iwd~~~~~~ 307 (387)
... .|+++..||.|.+||+.....
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred cCceEEEEEcCCCceehhhhhcccc
Confidence 754 778888999999999876533
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=5.5e-17 Score=148.97 Aligned_cols=281 Identities=16% Similarity=0.153 Sum_probs=188.8
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCC-------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSG-------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
++++.++++|+.||+|++||...- +...++..-..++.++...+ ....++.++.||.|++.+++..+..
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccc
Confidence 456699999999999999998532 22233433456677777777 3344555899999999998762111
Q ss_pred -------cccC--CCCC-eeeEEecc-CCC-EEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEE
Q 035621 78 -------HNIP--VPEP-VAPLATTA-DGS-YLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISG 143 (387)
Q Consensus 78 -------~~~~--~~~~-v~~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~ 143 (387)
+... ..+. |..-+|.. .+. .++.+...+.|..||++......+++ ...+.|++++.+|.+++++.|
T Consensus 1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEe
Confidence 1111 2233 33444444 233 67788888999999998876655544 235789999999999999999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCC-CceEEEE-e-CCCcEEEEeCCCCcEEEEE
Q 035621 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSF-NSIIISC-S-MDCTCKFWRLLNGTHLSTV 219 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~l~s~-~-~d~~i~iwd~~~~~~~~~~ 219 (387)
+..|.+.+||++ -..++..+ .++..+++.+..+|... ....+++ + ..+.|.+|++.+|.+...+
T Consensus 1214 ts~G~l~lWDLR------------F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLR------------FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred cCCceEEEEEee------------cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 999999999994 33344333 24557888888888763 1344444 3 4788999999999776665
Q ss_pred ecC-----------C---------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--------------------
Q 035621 220 TFP-----------C---------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-------------------- 259 (387)
Q Consensus 220 ~~~-----------~---------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------- 259 (387)
-.. . .....++...+..+.+|+.|+.|+.||.........
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 421 1 122334444567899999999999999866543300
Q ss_pred ccc-----------------------cee----EeecccccccEEEEEEecC-CCEEEEEeCCCcEEEEE
Q 035621 260 HKG-----------------------QEL----VTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 260 ~~~-----------------------~~~----~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd 301 (387)
..+ ..+ ......|..+|+++++... ..+|++++.||.|+||.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 000 0012357788999988654 35889999999999994
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.9e-18 Score=140.67 Aligned_cols=287 Identities=17% Similarity=0.209 Sum_probs=208.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc----
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---- 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---- 76 (387)
+.|...|..|++|+.|..|.+||..+++....+ .+|...|..-.|-|.. ...-+++++.||.+++=.+.....
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--~d~ti~~~s~dgqvr~s~i~~t~~~e~t 225 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--GDRTIVTSSRDGQVRVSEILETGYVENT 225 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC--CCcCceeccccCceeeeeeccccceecc
Confidence 568889999999999999999999988877666 5788888888888732 223466689999999987744322
Q ss_pred ccccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEc---cCCCC---CeEEEEEcCCC-CEEEEEeCCCc
Q 035621 77 LHNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSF---SAHDK---PVSCLKISPDG-SLLISGGDDGV 148 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~v~~~~~~~~~-~~l~~~~~dg~ 148 (387)
....+|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+ +.+.. ....++.+|.. ..+++++.|..
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 2344588999999999964 56889999999999999877543332 23333 57889999954 48999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeee------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--C-------
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFV------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--G------- 213 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~------- 213 (387)
+++||.++...... ...+..+. ...-.|++++++.++ .-|+++..|-.|+++.-.. |
T Consensus 306 ~RvYD~R~~~~e~~------n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 306 ARVYDQRRIDKEEN------NGVLDKFCPHHLVEDDPVNITGLVYSHDG--SELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred hhhhcccchhhccc------cchhhhcCCccccccCcccceeEEecCCc--cceeeeecccceEEeccccccCCCCCCCc
Confidence 99999976543321 11222222 223468999998665 5566667788899985332 2
Q ss_pred ---cEEEE-Ee-c--CCceeEEEe-CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621 214 ---THLST-VT-F--PCAIMGLAL-DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG 285 (387)
Q Consensus 214 ---~~~~~-~~-~--~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 285 (387)
..... ++ | ...|..+-| -|...++++|+.-|.|.+|+-.++. +..++.+...-|+|+.-+|--
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e---------ii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE---------IIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH---------HHHHhhcccceEeccCCCCCC
Confidence 11112 22 2 234666655 5788999999999999999988743 333334555589999999999
Q ss_pred CEEEEEeCCCcEEEEECCCccE
Q 035621 286 KNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
..||++|.|..|+||-..+.+.
T Consensus 449 PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred chhhccCCccceeeecCCcccc
Confidence 9999999999999998755433
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=9.1e-17 Score=127.44 Aligned_cols=306 Identities=12% Similarity=0.092 Sum_probs=200.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.+|||+|+++|+.+.- .+.|-|..+-+..+.+.. -..|.-+.|..+... .+.....++.|.+|++...+-...+.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~---ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH---ILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeecccee---eeeeeeccceEEEEEeecceeEEEec
Confidence 4799999999999875 788999988877665542 344677778764322 12235789999999998887776666
Q ss_pred -CCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE--------E
Q 035621 82 -VPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA--------T 151 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~--------i 151 (387)
.+.++..++|+|||+.++ +...+-.|.+|.+.+.+... ++-.+..+..++|+|||++.+..+.-.... -
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 457899999999996554 55678899999998776543 332345678899999999888776432110 1
Q ss_pred EeCCcccccCCCC-----CCCCccce---------Eeeecc-CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-
Q 035621 152 VPIFQLVDEHTDD-----KNPDDLML---------QKFVAH-NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH- 215 (387)
Q Consensus 152 wd~~~~~~~~~~~-----~~~~~~~~---------~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 215 (387)
|-+-+........ -.+.+.-+ +.+..| .-.+..+.|+|.+ ++|+.|+.|+.+|+.+--+.+.
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc--ceEEeeccchhhhhhceeeeeeh
Confidence 1110000000000 00111111 111122 2568889999975 9999999999998865322111
Q ss_pred -----------------------------------------------------------EEEEe-------cCCceeEEE
Q 035621 216 -----------------------------------------------------------LSTVT-------FPCAIMGLA 229 (387)
Q Consensus 216 -----------------------------------------------------------~~~~~-------~~~~v~~~~ 229 (387)
+..++ ....+..++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00111 012466799
Q ss_pred eCCCCCeEEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 230 LDPTETDFFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 230 ~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
|++|..++++-.. -+.+.+||++... +...+ ....+|....|+|....|+.+.....+++|.......
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLK---------LHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhh---------hhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 9999999998765 4789999998732 22221 2456899999999988888877777899999887666
Q ss_pred EEEeecccCCCceeEEEEec
Q 035621 308 VMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 308 ~~~~~~~~~~~v~~~~~~~~ 327 (387)
+..-.. .+.|..+.+.-.
T Consensus 396 V~vP~~--GF~i~~l~W~~~ 413 (447)
T KOG4497|consen 396 VGVPKK--GFNIQKLQWLQP 413 (447)
T ss_pred EecCCC--CceeeeEEecCC
Confidence 654433 256777655443
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=6.2e-17 Score=127.83 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=168.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCc-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTP- 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~- 76 (387)
.+|++|+..+|++.....|.||..... +...+++.|...|+++.|+| ....+++++.|..-++|.. ..++-
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap----~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP----KSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC----CCCceeEccCCCCccccccCCCCeec
Confidence 379999999999999999999987644 46788999999999999999 5667788999999999998 44432
Q ss_pred --ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621 77 --LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIA 150 (387)
Q Consensus 77 --~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 150 (387)
+..+.++..++++.|+|.++.+++|+....|.+|-++..+-- +.-+.+...|+++.|+|++-+|++|+.|+..+
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 234457889999999999999999999999999887654321 22345678899999999999999999999999
Q ss_pred EEeCCcc-cccC-----CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 035621 151 TVPIFQL-VDEH-----TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FP 222 (387)
Q Consensus 151 iwd~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~ 222 (387)
+|...-. .+.. .....+-+..+.++....+.+..+.|+|++ +.|+-.+.|.++.+-|..... ...... ..
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~~lawv~Hds~v~~~da~~p~~~v~~~~~~~ 249 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--NRLAWVGHDSTVSFVDAAGPSERVQSVATAQ 249 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--CEeeEecCCCceEEeecCCCchhccchhhcc
Confidence 9976321 1111 111112233444555667889999999985 899999999999999977654 222222 22
Q ss_pred CceeEEEeCC
Q 035621 223 CAIMGLALDP 232 (387)
Q Consensus 223 ~~v~~~~~~~ 232 (387)
-+..++.|-.
T Consensus 250 lP~ls~~~is 259 (361)
T KOG1523|consen 250 LPLLSVSWIS 259 (361)
T ss_pred CCceeeEeec
Confidence 4455555543
No 208
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=2.4e-17 Score=141.56 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=165.3
Q ss_pred CCCCCeEEEEEccCCCcc-----cccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCC
Q 035621 60 TTGSGSVHLYNLWSSTPL-----HNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDK 126 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~ 126 (387)
.+..|.|-||++.....+ -.+.....|+.+.|.| |...|++++.||.|++|.+..+ .+...+..|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 456789999999654322 2233456799999999 7788999999999999998654 34456778999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
.|+++.|+| -.+.|++++.|.+|++||+ ........+.+|.+.|..++|+|++ +.+++.+.||+|
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl------------~~~~~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDL------------ANAKLYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTL 744 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeeh------------hhhhhhheeccCcCceeEEEECCCC--cceeeeecCceE
Confidence 999999999 5568999999999999999 5666777899999999999999995 999999999999
Q ss_pred EEEeCCCCcE-EEEEe--cCCceeEEEeCCCCCeEEEEccC----CcEEEEeccccccccccccceeEeecccccccEEE
Q 035621 206 KFWRLLNGTH-LSTVT--FPCAIMGLALDPTETDFFAAGSD----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 206 ~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (387)
++|+.++++. ++.-+ ....--.+.|..+|+++++.+.| ..|.+||...-... .+....-.-...+.-
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~------pl~t~~lDvaps~Lv 818 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR------PLYTQVLDVAPSPLV 818 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC------cceeeeecccCcccc
Confidence 9999987653 32222 22344578899999999888765 45777776552210 000000000001111
Q ss_pred EEEecCCC-EEEEEeCCCcEEEEECCCccE
Q 035621 279 VMMMNEGK-NLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 279 ~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~ 307 (387)
-.+.+|.. +|++|-.|..|.+|.+-...+
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 12344544 667888899999999866544
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.3e-17 Score=136.42 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=146.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208 (387)
Q Consensus 129 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iw 208 (387)
.+++|+++|..+++++.||++|+|+. +....+.....|...|.++.|+|++ .+|++-+.| ..+||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~------------Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW------------PSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec------------CcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEE
Confidence 78999999999999999999999998 5666777888999999999999996 899999999 89999
Q ss_pred eCCCCcEEEEEe---cCCceeEEEeCCCC---CeEE--EEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621 209 RLLNGTHLSTVT---FPCAIMGLALDPTE---TDFF--AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280 (387)
Q Consensus 209 d~~~~~~~~~~~---~~~~v~~~~~~~~~---~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 280 (387)
+.+++.++.... .+.....+.|+.|+ .+.+ ....-+.|..|++.........+ ..... .....|++++
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~---~~~~~-~~~~siSsl~ 288 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR---LRKKI-KRFKSISSLA 288 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc---hhhhh-hccCcceeEE
Confidence 999997766654 34456778888776 3332 23446778888877644321111 11111 2345799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621 281 MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG 330 (387)
Q Consensus 281 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (387)
.+++|++++.|+.||.|-|++..+-+.++.++..|.+.||++.|+|....
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 99999999999999999999999999999999888999999999985543
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.7e-16 Score=124.05 Aligned_cols=276 Identities=15% Similarity=0.156 Sum_probs=180.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC----C-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS----T- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~----~- 75 (387)
++|++.-.-+|++..|..|++||-.+ .....++. ....|++++|-|. .++.++.++. +-|.+|..... .
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl---saselavgCr-~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL---SASELAVGCR-AGICIWSDSRTLNANRN 178 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC---Ccceeeeeec-ceeEEEEcCcccccccc
Confidence 67888777789999999999999765 55455543 3456999999994 3444554554 45899976432 1
Q ss_pred -------cccccC--CCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 76 -------PLHNIP--VPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 76 -------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
..+.++ ...+|+.+.|.+||..+++++. +..|.+||..++..+.......+.++-+.|+||+.+|+.+.-
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 111222 3368999999999999999874 568999999998877665455678999999999999999999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC----Cc-------
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN----GT------- 214 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~------- 214 (387)
|+..++|...+.+ .........+.|...+|+|.+ ..+|++++..- ++|.+.- ..
T Consensus 259 davfrlw~e~q~w------------t~erw~lgsgrvqtacWspcG-sfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 259 DAVFRLWQENQSW------------TKERWILGSGRVQTACWSPCG-SFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred cceeeeehhcccc------------eecceeccCCceeeeeecCCC-CEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence 9999999763321 122223344589999999987 34555555443 3443321 00
Q ss_pred ----EEEEEe----------cCCceeEEEeCCCCCeEEEEccCC--------cEEEEeccccccccccccceeEeecccc
Q 035621 215 ----HLSTVT----------FPCAIMGLALDPTETDFFAAGSDG--------LIYKGLLKYQSRQQMHKGQELVTLANRH 272 (387)
Q Consensus 215 ----~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 272 (387)
.+..+. ..+.+.+++|.|.|.+|++.-..+ .|.+||.+........ ......
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels----~cg~i~-- 397 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS----YCGMIG-- 397 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE----eccccc--
Confidence 011111 135788999999999999976543 3666776652211110 001111
Q ss_pred cccEEEEEEec---CCCEEEEEeCCCcEEEEECC
Q 035621 273 DGVVVSVMMMN---EGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 273 ~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~ 303 (387)
......++|+| ++.+|..+=..|.+.-|++.
T Consensus 398 ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 398 GEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 11244556654 45666666667777766654
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2e-18 Score=142.62 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=173.0
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
...+.+.++.+|.+|+.|+..|.|-.+|..++++...+.. ...|.++.|-.+.++++++ ....+++||-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~--------- 198 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN--------- 198 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC---------
Confidence 4567889999999999999999999999999998888763 5678999999888777766 4578999986
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
.+..++.+..| ..|..+.|.|.. -+|++++..|.++--|+.+|+.+..+. ..+.+..++-+|-+..+-+|..
T Consensus 199 ----~GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 199 ----NGTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred ----CCcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 56666666655 578889999985 788999999999999999999998887 4567888999999999999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
+|+|.+|..... .++..+ -.|.++|.++++.++|+|++|.+.|..++|||+++-..+.++..
T Consensus 272 nGtVSlWSP~sk--------ePLvKi-LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 272 NGTVSLWSPNSK--------EPLVKI-LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CceEEecCCCCc--------chHHHH-HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 999999998872 233333 37999999999999999999999999999999999887777665
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=150.77 Aligned_cols=251 Identities=16% Similarity=0.142 Sum_probs=185.9
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
.+..+.+|...|.|+.|.. .+.++++++.|..++||..+++.++.... |.+.++.++.+.+..++++++.|..|+
T Consensus 182 ~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 3455678999999999998 56677779999999999999999988877 678899999999999999999999999
Q ss_pred EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-cccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF-QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
+|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+ ........ +. .+ .....+.++.+
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr-------p~-~~-~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR-------PL-KF-TEKDLVDSILF 324 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCC-------CC-Cc-ccccceeeeec
Confidence 99999999999999999999999999954 78899999999986 11111000 00 00 11244556666
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC-CCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT-ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV 266 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 266 (387)
... +.-++|++.|+.-..|.+.....- ...+.-+..+.+ ..+.+++-.+-.+.+|++..+. +.
T Consensus 325 ~~~--~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------l~ 388 (1113)
T KOG0644|consen 325 ENN--GDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------LL 388 (1113)
T ss_pred ccc--ccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccch---------hh
Confidence 554 478999999999988876532110 001111111111 1445556667788889887732 22
Q ss_pred eecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCccEEEEeec
Q 035621 267 TLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
....+|...+..+.++|-...+ .+++.||...|||+-.|.+++....
T Consensus 389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 2334799999999999966554 5889999999999999988876653
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.8e-16 Score=127.43 Aligned_cols=257 Identities=16% Similarity=0.156 Sum_probs=177.4
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccc
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLH 78 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~ 78 (387)
+.|...+.+..+..+..........+ .....+|..++.... .+++|-.+|.+.+|..+.+. .+.
T Consensus 70 evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg------~Litc~~sG~l~~~~~k~~d~hss~l~ 143 (412)
T KOG3881|consen 70 EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG------TLITCVSSGNLQVRHDKSGDLHSSKLI 143 (412)
T ss_pred eEeeccccCcccccccccCCccccccccccccccccccccchhhcCC------EEEEEecCCcEEEEeccCCccccccce
Confidence 34444445555666655544443332 233445555555443 34446789999999987543 233
Q ss_pred ccCCCCCeeeEEeccCCC-EEEEecCC--CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 79 NIPVPEPVAPLATTADGS-YLFTGGLS--GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
.+.....+..+.-++... .+++|+.. ..+.+||+++.+.+..-+. -|+. +| +=.|-+|+.
T Consensus 144 ~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN----------vpnD-~L-----~LrVPvW~t- 206 (412)
T KOG3881|consen 144 KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN----------VPND-RL-----GLRVPVWIT- 206 (412)
T ss_pred eeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC----------CCCc-cc-----cceeeeeec-
Confidence 333445666666666444 45558877 7889999877644433221 1111 11 123556644
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceeEEEeCCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT-FPCAIMGLALDPT 233 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~ 233 (387)
++.|.+..+...|++++.-+.+++||.+.+ +++..|. ...+++++...|.
T Consensus 207 ----------------------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 207 ----------------------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred ----------------------------cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence 455555544588999999999999999865 4677777 5789999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
++++++|..-|.+..||++. .......+.+..+.|.++..+|.+++++++|-|..|||+|+++.+++...--
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~--------~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRG--------GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred CcEEEEecccchhheecccC--------ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 99999999999999999998 4455555678899999999999999999999999999999999888876543
Q ss_pred ccCCCceeEEEEe
Q 035621 314 ELAGSISEMVIAT 326 (387)
Q Consensus 314 ~~~~~v~~~~~~~ 326 (387)
. ..++.+.+..
T Consensus 331 K--s~lt~il~~~ 341 (412)
T KOG3881|consen 331 K--SRLTFILLRD 341 (412)
T ss_pred h--ccccEEEecC
Confidence 2 2567776643
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.2e-17 Score=138.41 Aligned_cols=247 Identities=13% Similarity=0.177 Sum_probs=170.6
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEecc--CCCEEEEecCCC
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTA--DGSYLFTGGLSG 105 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg 105 (387)
..+++.||++.|+++.|+.++.+++ +|+.|-.+.|||.-..+++..+. |...|.++.|-| +...+++|..|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~----SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLA----SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhhccccceecceeecCCCCEEe----ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 3457889999999999999665555 49999999999998888888776 668899999999 456889999999
Q ss_pred cEEEEeCCCC----------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 106 NVYAISVPKG----------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 106 ~i~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
.|+++|+... +....+..|...|..++-.|++ +.+.++++||+|+-+|+++........ .-...+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--~~~~~l~n 195 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--DCPSILVN 195 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc--cccHHHHH
Confidence 9999999742 3345566788999999999987 789999999999999997643322111 01112222
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceeEEE-eCCCCCeEEEEccCCc
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCAIMGLA-LDPTETDFFAAGSDGL 245 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~-~~~~~~~l~~~~~dg~ 245 (387)
+...--...++.++|.. ..+|+.|+.|-..++||.+... ..+. .+....|+. |+|.+- ...+|.
T Consensus 196 y~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn 268 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGN 268 (758)
T ss_pred hchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCcccc
Confidence 33333456788889885 6899999999999999964321 1111 111122222 222211 011111
Q ss_pred EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+. .....++-+.|+|+|.-|+..-..-.|+++|+..++....+.
T Consensus 269 ~~-----------------------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 269 LD-----------------------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cc-----------------------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 10 011235778999999866655455589999999987765543
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.3e-15 Score=135.78 Aligned_cols=222 Identities=17% Similarity=0.091 Sum_probs=146.9
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
...|.+||...........+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+...+.+|+|||+.
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 346899998655555555567789999999999999887643 469999998876543 3334445567899999997
Q ss_pred EE-EEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCC
Q 035621 140 LI-SGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNG 213 (387)
Q Consensus 140 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~ 213 (387)
++ +.+.+| .|++||+. .+ ....+..+.......+|+|++ +.|+..+. +|. |.++|+.++
T Consensus 262 l~~~~s~~g~~~Iy~~d~~------------~g-~~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLG------------SR-QLTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred EEEEEeCCCCceEEEEECC------------CC-CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCC
Confidence 75 445555 58888882 22 234444555555678898885 66666553 444 667777776
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
+..............+|+|+|+.|+..+.++ .|++||+..+... .+. +........|+|||++|+.
T Consensus 327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------~Lt--~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 327 SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------TLT--PGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------ECC--CCCCCCCceECCCCCEEEE
Confidence 5433222334455789999999998875433 5889998763221 111 2223446789999998887
Q ss_pred EeCC---CcEEEEECCCccEEEEee
Q 035621 291 AAED---GSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 291 ~~~d---g~i~iwd~~~~~~~~~~~ 312 (387)
.+.+ +.|.++++.. .....+.
T Consensus 396 ~s~~~g~~~L~~~~~~g-~~~~~l~ 419 (433)
T PRK04922 396 ATREGGRGVLAAVSTDG-RVRQRLV 419 (433)
T ss_pred EEecCCceEEEEEECCC-CceEEcc
Confidence 6653 3588888754 4445554
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.1e-16 Score=140.74 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=178.4
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC----CCCeeeEEecc--CCCEEEEecCCCcEEEEeCC
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV----PEPVAPLATTA--DGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~----~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 113 (387)
+...+.|+| ....++++...-.|++||.+.++.+..+.. ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 456677777 444455567778999999999999887773 35688888865 55689999999999999742
Q ss_pred C-----CceeEEccC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCC
Q 035621 114 K-----GDILRSFSA-------HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHND 180 (387)
Q Consensus 114 ~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 180 (387)
. .+.+..+.+ ..+.=.-+.|.....+|++++.-..|+|||.. .......+. +...
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~------------~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH------------KEQVVADIPYGSST 1209 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc------------cceeEeecccCCCc
Confidence 2 233333221 11111335677666677777778999999993 333333333 2344
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEe-cCCc--eeEEEeCCCCC-eEEEEccCCcEEEEeccc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVT-FPCA--IMGLALDPTET-DFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 253 (387)
.++++...... +++++.|-.||.|++||.+.... +...+ |... |..+.+.+.|- .|++|+.+|.|++||++.
T Consensus 1210 ~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1210 LVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred cceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 56666554443 68999999999999999986543 33333 4444 99999999774 499999999999999998
Q ss_pred cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee------cccCCCceeEEEEe
Q 035621 254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK------NELAGSISEMVIAT 326 (387)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~ 326 (387)
....... .+... ....+..+++..+++...+|+|+. +.|+||++.. +.+..++ +...+++++++|-+
T Consensus 1289 ~~~e~~~---~iv~~-~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1289 SSKETFL---TIVAH-WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred Ccccccc---eeeec-cccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc
Confidence 5222111 11100 011235899999999999999998 9999999764 4444443 33445667776533
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.2e-16 Score=131.81 Aligned_cols=207 Identities=15% Similarity=0.223 Sum_probs=141.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS------ 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~------ 74 (387)
|+|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|.. ....+++|..|..|+++|+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~~~~~~~d 133 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDSSKEGGMD 133 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecccccccccc
Confidence 789999999999999999999999888887776 6899999999999832 2234556999999999999742
Q ss_pred ----CcccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCcee----------EEccCCCCCeEEEEEcC-CC
Q 035621 75 ----TPLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDIL----------RSFSAHDKPVSCLKISP-DG 137 (387)
Q Consensus 75 ----~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~-~~ 137 (387)
+....+. |...|..++..|++ +.+.+++.||+|+-+|++..... ..+....-...|+..+| +.
T Consensus 134 ~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp 213 (758)
T KOG1310|consen 134 HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP 213 (758)
T ss_pred cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence 1222222 55778889999988 78889999999999999763211 11111223567899999 45
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCC------CCccceEeee-ccC-----------CCeEEEEEeeCCCCceEEEE
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKN------PDDLMLQKFV-AHN-----------DSVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~-~~~-----------~~i~~~~~~~~~~~~~l~s~ 199 (387)
.+|++|+.|-..++||.+........... ....++..+. +|- ..++.+.|+|++ .-|+..
T Consensus 214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG--tElLvs 291 (758)
T KOG1310|consen 214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG--TELLVS 291 (758)
T ss_pred ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC--cEEEEe
Confidence 68999999999999997554332211111 0111122221 111 124567778775 444444
Q ss_pred eCCCcEEEEeCCC
Q 035621 200 SMDCTCKFWRLLN 212 (387)
Q Consensus 200 ~~d~~i~iwd~~~ 212 (387)
-....|+++|+..
T Consensus 292 ~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 292 WGGEHVYLFDVNE 304 (758)
T ss_pred eCCeEEEEEeecC
Confidence 4445688888743
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.9e-15 Score=132.98 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=153.5
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec---CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG---LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
...|.+||.+.............+...+|+|||+.|+..+ .+..|.+|++.+++... +....+.+...+|+|||+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3478999987666555555667899999999999988654 23579999998876433 2223344557899999998
Q ss_pred EEEE-eCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCC
Q 035621 140 LISG-GDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNG 213 (387)
Q Consensus 140 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~ 213 (387)
|+.. +.+| .|++||+. .. ....+..+...+....|+|++ +.|+..+. ++. |.++|+.++
T Consensus 257 La~~~~~~g~~~I~~~d~~------------tg-~~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLA------------SG-QIRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EEEEEcCCCCcEEEEEECC------------CC-CEEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCC
Confidence 8765 4455 48888882 22 233444445567788999985 66666554 344 555577666
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
+...............|+|||++|+..+.+ ..|++||+..+... .+... .......|+|||++|+.
T Consensus 322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~---------~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ---------VLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EeCCC--CCCCCceECCCCCEEEE
Confidence 543322234455678999999998876543 35788888764321 11111 12345789999999999
Q ss_pred EeCCCc---EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 291 AAEDGS---VYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 291 ~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
++.++. +.+++++ |+....+..+ .+.+....|++
T Consensus 391 ~s~~~~~~~l~~~~~~-G~~~~~l~~~-~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEECC-CCCeEECccC-CCCcCCcccCC
Confidence 887764 6777874 5555666653 44565555543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=6.7e-15 Score=130.70 Aligned_cols=238 Identities=14% Similarity=0.063 Sum_probs=156.1
Q ss_pred cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621 19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL 98 (387)
Q Consensus 19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 98 (387)
.|.++|..... .+.+..+...+...+|+|++...+.. .....+..+.+|++.+++.......+..+....|+|||+.|
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~-s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYV-TFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEE-EecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 69999976443 34455567789999999976544321 11234568999999888655544455566789999999988
Q ss_pred EEe-cCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 99 FTG-GLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-GVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 99 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+.. ..+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ +...+|.+.. ... ....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~----------~~g-~~~~ 325 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI----------NGG-APQR 325 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC----------CCC-CeEE
Confidence 865 3444 59999998887654 43445567889999999988776653 4555553310 111 2233
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCc---EEE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL---IYK 248 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i 248 (387)
+..+........|+|++ ++++..+.+ ..|.+||+.+++.. .+..........|+|||++|+.++.++. +++
T Consensus 326 lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 326 ITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred eecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 33344445678888885 666665443 35888999887643 3433333456789999999999888764 556
Q ss_pred EeccccccccccccceeEeecccccccEEEEEEec
Q 035621 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
+++.. ..... +..|.+.+...+|+|
T Consensus 403 ~~~~G---------~~~~~-l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTDG---------RFKAR-LPATDGQVKFPAWSP 427 (429)
T ss_pred EECCC---------CCeEE-CccCCCCcCCcccCC
Confidence 66543 12222 235777788888887
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-14 Score=116.01 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=163.9
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC--CCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCC-
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV--PEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKG- 115 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~- 115 (387)
.++.++|++. ...++.+..|-.|++|+-.. +....+++ +..|+|++|-|. ++.|++|+..| |.+|.....
T Consensus 100 dlr~~aWhqH----~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 100 DLRGVAWHQH----IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred ceeeEeechh----hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 4778889882 23456688999999999766 44445553 468999999995 45777777655 999986321
Q ss_pred ---ce----------eEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 116 ---DI----------LRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 116 ---~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
+. +..-++| .+|++|+|++||..+++++. |..|.+||... +..+.-.....+.
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt------------g~~~pL~~~glgg 240 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT------------GQKIPLIPKGLGG 240 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC------------CCcccccccCCCc
Confidence 11 1122344 68999999999999999884 67899999832 2222222345577
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeC-CCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRL-LNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~ 259 (387)
+.-+.|+|++ .+|+.++-|+..++|+. ++....+-.-..+.|...+|+|+|++|+..+. .-.+ |.+........
T Consensus 241 ~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~ 316 (445)
T KOG2139|consen 241 FSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSV 316 (445)
T ss_pred eeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCcc
Confidence 8889999996 89999999999999954 34444444446679999999999988766543 3333 44333221111
Q ss_pred cc------cceeEe------ec---ccccccEEEEEEecCCCEEEEEeCCC--------cEEEEECCCccEE
Q 035621 260 HK------GQELVT------LA---NRHDGVVVSVMMMNEGKNLVSAAEDG--------SVYIWEIEKRQVV 308 (387)
Q Consensus 260 ~~------~~~~~~------~~---~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~ 308 (387)
.. ...+.. .. .-..+++.+++|.|.|.+||+.-..+ .|.+||....-.+
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 11 000000 00 11246789999999999999875443 3677876654433
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=131.45 Aligned_cols=206 Identities=16% Similarity=0.244 Sum_probs=152.4
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeEEcc----CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCC----
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILRSFS----AHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTD---- 163 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 163 (387)
+.+--+++|-..|.+.+.|....+..+.+. -.+..|+|+.|-| +...++++-.+|.+++||..........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456678888888999999986633222222 1246899999999 4457777888999999987322111000
Q ss_pred ------------CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEe
Q 035621 164 ------------DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL 230 (387)
Q Consensus 164 ------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 230 (387)
.......++..+.--.+.|...+|+|+ +++|++.+.||.+||||..+.+.+..++ .-+...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 001122344445555668899999986 5999999999999999999887766555 3467899999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec---------------------------
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN--------------------------- 283 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------------------------- 283 (387)
+|||++|++|++|..|.||.+.. ..++..-.+|..+|+.++|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~e---------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~ 411 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEE---------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEI 411 (636)
T ss_pred cCCccEEEecCCcceEEEEEecc---------ceEEEeccccccceeeEeecccccccccccccccccccccchhccccc
Confidence 99999999999999999999986 455666679999999999983
Q ss_pred --------CC-------------CEEEEEeCCCcEEEEECCCccEEE
Q 035621 284 --------EG-------------KNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 284 --------~~-------------~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
++ -.|.+.+.|-.+.+||+....+..
T Consensus 412 r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 412 RANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01 146778899999999998765544
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=9e-15 Score=123.50 Aligned_cols=221 Identities=19% Similarity=0.256 Sum_probs=152.8
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEeCCc
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKI-----SPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
+....++-.|.+|+..- ...+++|+.+.+..+ ....-.....+|=+| .|.+--++.|-.-|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44445555677776543 346888988744221 111111122333344 34566788888889999988743
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--------------CcEE------
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--------------GTHL------ 216 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~------ 216 (387)
. +. ..............++++.|.|.. ...++.+-.+|.+.+||... +...
T Consensus 205 ~-~~-------sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 205 F-EV-------SKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-HH-------HHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeee
Confidence 1 00 000000111234789999999986 46777778899999997631 1111
Q ss_pred --------EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621 217 --------STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 217 --------~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
..+. ....|+.++|+|||++||+.+.||.++|||..+. ++....+..-+...|++|||||+|
T Consensus 276 sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccE
Confidence 1111 2357889999999999999999999999999873 344444456678999999999999
Q ss_pred EEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 288 LVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|++|++|-.|.||.+..++++..-++|.. -|+.++|.+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred EEecCCcceEEEEEeccceEEEecccccc-ceeeEeecc
Confidence 99999999999999999999999999866 999999984
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-14 Score=128.69 Aligned_cols=218 Identities=11% Similarity=-0.038 Sum_probs=148.1
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
...|.++|...........+...+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+|||+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 35788999865555544556778999999999999887753 468999999888653 44456667788999999987
Q ss_pred EE-EEeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCC
Q 035621 140 LI-SGGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNG 213 (387)
Q Consensus 140 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~ 213 (387)
|+ +.+.++. |++||+. . .....+..+........|+|++ +.++..+. +| .|.++|+..+
T Consensus 260 la~~~~~~g~~~Iy~~d~~------------~-~~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLR------------S-GTTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEEEecCCCceEEEEECC------------C-CceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCC
Confidence 65 5555655 6667772 2 2334455555566778899885 66666553 33 6888898766
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
+..........+....|+|+|+.|+....+ ..|.+||+..... ..+. ....+....|+|||++|+.
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---------~~lt--~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---------RILT--SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---------Eecc--CCCCCCCCeECCCCCEEEE
Confidence 544333345566778999999999887643 3577777654211 1111 1224667899999998876
Q ss_pred EeCC------CcEEEEECCCccE
Q 035621 291 AAED------GSVYIWEIEKRQV 307 (387)
Q Consensus 291 ~~~d------g~i~iwd~~~~~~ 307 (387)
.+.+ ..++++|+..++.
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce
Confidence 5442 2578888876554
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.5e-14 Score=128.61 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=143.6
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
...+.++|...........+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 456888887544444444567789999999999999877643 359999998887543 3333455678999999997
Q ss_pred EE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeC--CCCcE
Q 035621 140 LI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRL--LNGTH 215 (387)
Q Consensus 140 l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~--~~~~~ 215 (387)
|+ +.+.+|...+|.+.. .......+..+........|+|++ +.|+..+. ++...+|.+ .+++.
T Consensus 254 la~~~~~~g~~~Iy~~d~-----------~~~~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNA-----------DGSGLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred EEEEEccCCCceEEEEEC-----------CCCCcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCce
Confidence 76 567788777776521 112234444455556677899885 66665443 466666654 44443
Q ss_pred EEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 216 LSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
.............+|+|+|++|+..+.++ .|++||+..+... .+. .........|+|||++|+..+
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---------~lt--~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---------ALT--DTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---------Ecc--CCCCccCceECCCCCEEEEEE
Confidence 22222233345678999999998876654 5899998764321 111 112235679999999988776
Q ss_pred CCC---cEEEEECCCccEEEEee
Q 035621 293 EDG---SVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 293 ~dg---~i~iwd~~~~~~~~~~~ 312 (387)
.++ .+.+.++ +++....+.
T Consensus 390 ~~~g~~~l~~~~~-~g~~~~~l~ 411 (427)
T PRK02889 390 QQGGRSVLAAVSS-DGRIKQRLS 411 (427)
T ss_pred ecCCCEEEEEEEC-CCCceEEee
Confidence 544 3555565 355555554
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.4e-14 Score=113.92 Aligned_cols=279 Identities=10% Similarity=0.058 Sum_probs=188.7
Q ss_pred ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
+.|+.|..++ .....++.|.+|++...+-...+.....++.++.|+|++.- .+.+..-+-.|.+|.+.+.+....-
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrh---iL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRH---ILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcce---EeeeecceeEEEEEEeccceeEEec
Confidence 4577776554 45578889999999988888889888889999999997522 2233677899999999877655443
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCC------------------------------------cEEEEeCCCCceeEEccCC
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSG------------------------------------NVYAISVPKGDILRSFSAH 124 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~ 124 (387)
-....+..++|+|||++.+..+.-. .+.+||-.-.-.+..+. .
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~ 209 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-R 209 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-e
Confidence 3445678899999999877765321 12222211000111111 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc------------ccc-----------------------------CCC
Q 035621 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQL------------VDE-----------------------------HTD 163 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~-----------------------------~~~ 163 (387)
.-.+..++|+|.+++|++|+.|+.+++.+-..- .+. ...
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 246889999999999999999999987543110 000 000
Q ss_pred CCC-------------CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621 164 DKN-------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTHLSTVTFPCAIMGL 228 (387)
Q Consensus 164 ~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~ 228 (387)
... ...++...+......+.-++|+++. .+++|-.. -..+-+||++..+....+....+|...
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf 367 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAF 367 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEE
Confidence 000 0001111112223456778998885 66666533 256999999998887777788999999
Q ss_pred EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
.|+|....|+.+.....+++|..... ..+... ...-.|..++|..+|..++-.+.|..
T Consensus 368 ~WdP~~prL~vctg~srLY~W~psg~---------~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAPSGP---------RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcCCCc---------eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 99999999999998889999987641 222221 23357999999999999999888853
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.4e-15 Score=124.66 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=188.2
Q ss_pred ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+..+|||+|+ |+|...-.|++||+.+-.+. |..|... |.-.-.+.+ .+..+.-..|.+|.+..- ...-.
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD----~SK~v~L~~DR~IefHak--~G~hy 128 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDD----YSKSVFLQNDRTIEFHAK--YGRHY 128 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccc----hhhheEeecCceeeehhh--cCeee
Confidence 4578999875 67778889999999755443 3334332 332223321 111111234555554321 12222
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
.+..+..-..++++.-..-|++++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 33345556667776644446666666789999999999999998878999999999988899999999999999985422
Q ss_pred ccCCCCCCCCccceEeeeccCC-----CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHND-----SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALD 231 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~ 231 (387)
.... -........|.+ .|+++.|..+ |-.+++|+.+|.+.|||++..+++..-.| ..+|..+.|.
T Consensus 209 rv~~------l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 209 RVGT------LDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred hhee------eecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 1110 011111222333 4899999866 48899999999999999999998877765 4578899998
Q ss_pred CCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 232 PTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 232 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+.+. --++......++|||-.++. ..... .....++.+|+-|++.+++++-.++.+..|=+..
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk--------~~asi--Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWDECTGK--------PMASI--EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCCceEEecchHHhhhcccccCC--------ceeec--cccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 7643 33444456789999988843 33332 2345589999999999999998888777776554
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.7e-15 Score=125.67 Aligned_cols=230 Identities=13% Similarity=0.211 Sum_probs=164.6
Q ss_pred cccccCCCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeE----------------------------EccCCC-
Q 035621 76 PLHNIPVPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILR----------------------------SFSAHD- 125 (387)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~- 125 (387)
.++.+.++...+.+..+|||+|+. +|...-.|++||+.+-.+.. .+.-|.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 455666788899999999999865 56677899999986543210 000010
Q ss_pred ----------CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 126 ----------KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 126 ----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
..-..++++.-..-|+.++....|+-+++ ..+..+..+....+.++++..++.. .+
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNL------------EqGrfL~P~~~~~~~lN~v~in~~h--gL 189 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL------------EQGRFLNPFETDSGELNVVSINEEH--GL 189 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEc------------cccccccccccccccceeeeecCcc--ce
Confidence 01123333332223455555566777777 5666777777777899999998875 89
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCC------------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 196 IISCSMDCTCKFWRLLNGTHLSTVTFPC------------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
|++|+.+|.|.+||.+..+....+.... .|+++.|+.+|-.+++|+.+|.+++||++.. .
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--------~ 261 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--------K 261 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--------C
Confidence 9999999999999999888777665322 3999999999999999999999999999983 2
Q ss_pred eeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621 264 ELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG 330 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 330 (387)
++..--....-+|..+.|.+. +..+++. ....++|||-.+|+....+.... .++.+|+.++.+-
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm 327 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGM 327 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC--CcCceeeecCCce
Confidence 333222244567899999765 4456655 45689999999999998887654 3888887776644
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.1e-14 Score=127.08 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=152.5
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (387)
..|.+||.. +...+.+..+...+.+.+|+|++...+.. ........|.+||+.+++.......+....+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~-s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYV-SFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEE-ecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 359999975 44455566677789999999976543321 1122356799999988876544444555668899999997
Q ss_pred EEE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEeCCcccccCCCCCCCCccc
Q 035621 98 LFT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGV--IATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 98 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
|+. .+.+| .|++||+.+++. ..+..+.......+|+|||+.|+..+ .+|. |+++|+. ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~------------~g~- 327 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS------------GGS- 327 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC------------CCC-
Confidence 764 44454 699999988775 44555555567889999999887766 3455 5555551 111
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC---Cc
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---GL 245 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 245 (387)
...+..+.......+|+|++ +.++..+.++ .|.+||+.+++.. .+..........|+|||++++..+.+ +.
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceE
Confidence 22222233344568888885 6666554332 6999999887654 44443345567999999988877653 35
Q ss_pred EEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
+++++.... ... .+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~---------~~~-~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGR---------VRQ-RLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCC---------ceE-EcccCCCCCCCCccCC
Confidence 666666431 111 1123445566677765
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.5e-13 Score=108.94 Aligned_cols=173 Identities=18% Similarity=0.280 Sum_probs=136.5
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc-CCCcccccC---CCCCeeeEEecc
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SSTPLHNIP---VPEPVAPLATTA 93 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~~~~~~~~---~~~~v~~~~~~~ 93 (387)
+.|.|||=....++.++. ...+|.++.+.++..+.. ..+.|.||... +.+.++.+. .+....+++-+.
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv-------l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV-------LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE-------ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 569999966667777776 677899999999877665 47899999987 445555555 344455554444
Q ss_pred CCCEEEEec-CCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCcccccCCCCCCCCc
Q 035621 94 DGSYLFTGG-LSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPDGSLLISGGDDGV-IATVPIFQLVDEHTDDKNPDD 169 (387)
Q Consensus 94 ~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 169 (387)
+..+||.-+ .-|.|++-|+...+. ...+++|...|.|++.+-+|.++|+++..|+ |+|||. ..+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt------------~~g 214 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT------------EDG 214 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc------------CCC
Confidence 555666544 568999999976655 4678899999999999999999999999997 799999 667
Q ss_pred cceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 170 LMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 170 ~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
..+.++... ...|.+++|+|+. .+|+.+|..|+++||.++.
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeec
Confidence 777777543 3579999999986 9999999999999999875
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=4.1e-15 Score=120.76 Aligned_cols=208 Identities=14% Similarity=0.211 Sum_probs=161.1
Q ss_pred cEEEeeCCCCcEEEEeCCCCc----eeEeccCCCCCceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcccccC-
Q 035621 9 EVILTSSPEGPITAYNPSSGA----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~~~~~- 81 (387)
..|++|-.+|.+.+|..+.+. .+..+..+ .++..+.-.+. ....+++|+.. ..+.+||++..+++..-+
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCC---CCceEecCchhcccceeeeecccceeeeeccC
Confidence 467788889999999987443 23333333 22444444441 11223348888 889999998886655443
Q ss_pred ---------CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621 82 ---------VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149 (387)
Q Consensus 82 ---------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 149 (387)
.+-.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.-...+++++...|+++++++|..-|.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 2335678899887 889999999999999999755 5777887778899999999999999999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL 228 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 228 (387)
..||++ ....... +.+..+.|++|..+|.. .++++|+-|+.+||+|+.+.+++........++++
T Consensus 272 ~~FD~r------------~~kl~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 272 AKFDLR------------GGKLLGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred heeccc------------CceeeccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 999994 3444443 78889999999999885 89999999999999999998888888778888888
Q ss_pred EeCCCC
Q 035621 229 ALDPTE 234 (387)
Q Consensus 229 ~~~~~~ 234 (387)
.+.++-
T Consensus 338 l~~~~~ 343 (412)
T KOG3881|consen 338 LLRDDV 343 (412)
T ss_pred EecCCc
Confidence 886653
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=1.5e-14 Score=113.35 Aligned_cols=157 Identities=14% Similarity=0.230 Sum_probs=109.2
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceE-
Q 035621 129 SCLKISPDGSLLISGGD---D-------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSII- 196 (387)
Q Consensus 129 ~~~~~~~~~~~l~~~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l- 196 (387)
..+.|+|+|++|+.-.. | +...+|.++. .......+.- ..++|.+++|+|++ +.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-----------~~~~~~~i~l~~~~~I~~~~WsP~g--~~fa 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-----------KNIPVESIELKKEGPIHDVAWSPNG--NEFA 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-----------CCCccceeeccCCCceEEEEECcCC--CEEE
Confidence 46789999987665433 1 2345555421 1223333332 34579999999986 444
Q ss_pred -EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccc
Q 035621 197 -ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRH 272 (387)
Q Consensus 197 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 272 (387)
+.|..++.|.+||++ ++.+..+. ...++.+.|+|+|+++++++. .|.+.+||.+.. ..+... +
T Consensus 76 vi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--------~~i~~~---~ 142 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--------KKISTF---E 142 (194)
T ss_pred EEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--------EEeecc---c
Confidence 445567899999996 66666664 567789999999999999874 467999999862 222222 2
Q ss_pred cccEEEEEEecCCCEEEEEeC------CCcEEEEECCCccEEEEee
Q 035621 273 DGVVVSVMMMNEGKNLVSAAE------DGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 312 (387)
...++.++|+|+|++|+++.. |+.++||+.. |+++....
T Consensus 143 ~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 143 HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 335789999999999998864 7889999985 66665544
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-14 Score=134.21 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=158.5
Q ss_pred ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCC-------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621 79 NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKG-------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA 150 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 150 (387)
...|...+..++.++.. .++++|+.||+|++||.+.- +...++......+.++.+.+.++.+++++.||.|.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 34467778888888755 99999999999999998542 12233333467899999999999999999999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccC-CCeEEE-EEeeCCCCc-eEEEEeCCCcEEEEeCCCCcEEEEEe---cCCc
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAI-TCCIGSFNS-IIISCSMDCTCKFWRLLNGTHLSTVT---FPCA 224 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~ 224 (387)
+.++....... ...........+. +.+.++ ++.... +. .++.+..-+.|..||++......+++ .++.
T Consensus 1124 ~~~id~~~~~~-----~~~~~~ri~n~~~~g~vv~m~a~~~~~-~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1124 VLRIDHYNVSK-----RVATQVRIPNLKKDGVVVSMHAFTAIV-QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred EEEcccccccc-----ceeeeeecccccCCCceEEeecccccc-cceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99995421110 0111111112222 223222 232222 33 78888888999999999887776666 3578
Q ss_pred eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC---CEEEEEe--CCCcEEE
Q 035621 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG---KNLVSAA--EDGSVYI 299 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~--~dg~i~i 299 (387)
|++++.+|.+.+++.|+..|.+.+||++. ...+..+..++..+++.+..+|-. ...++++ ..+-|.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF--------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRF--------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeec--------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 99999999999999999999999999998 344455555667888888877643 4555544 4678999
Q ss_pred EECCCccEEEEeecc
Q 035621 300 WEIEKRQVVMVLKNE 314 (387)
Q Consensus 300 wd~~~~~~~~~~~~~ 314 (387)
|++.+|.....+...
T Consensus 1270 wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWAS 1284 (1431)
T ss_pred eecccCcceEEEEcC
Confidence 999999887777654
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.7e-14 Score=125.08 Aligned_cols=217 Identities=13% Similarity=0.078 Sum_probs=147.9
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (387)
..|.++|.. +.....+..|...+....|+|++...+.. .....+..|.+||+.+++.......++.+...+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~-s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYM-SYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEE-EecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 379999974 55556677788889999999976543321 1123457899999988876544445667888999999998
Q ss_pred EE-EecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccc
Q 035621 98 LF-TGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 98 l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
|+ +.+.++ .|++||+.+++. ..+..+........|+|||+.++..+. +| .|+++|+. ...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-------------g~~ 325 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-------------GSN 325 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-------------CCC
Confidence 76 444555 488889887765 445556666778999999998887663 33 57777762 122
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC-----
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD----- 243 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 243 (387)
...+..+...+....|+|++ +.|+..+.+ ..|.+||+..+. ...+.....+....|+|||+.|+..+.+
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eEEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 33343344556678899885 676665543 368888976544 3444444457788999999998776542
Q ss_pred -CcEEEEeccc
Q 035621 244 -GLIYKGLLKY 253 (387)
Q Consensus 244 -g~i~i~d~~~ 253 (387)
..++++|+..
T Consensus 403 ~~~L~~~dl~g 413 (435)
T PRK05137 403 APKLYTVDLTG 413 (435)
T ss_pred cceEEEEECCC
Confidence 2577777654
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.67 E-value=3.2e-12 Score=110.53 Aligned_cols=299 Identities=14% Similarity=0.147 Sum_probs=182.8
Q ss_pred EEeeCCC----CcEEEEeC--CCCcee--EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--C--ccc
Q 035621 11 ILTSSPE----GPITAYNP--SSGAIL--AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--T--PLH 78 (387)
Q Consensus 11 l~~~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~--~~~ 78 (387)
+++|+.. +.|++|++ .+++.. ..+. .......++++|+..++...--....++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445444 68999888 455442 2222 33346778888855443321111126789999998764 2 222
Q ss_pred ccC-CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC-CceeEE---cc----------CCCCCeEEEEEcCCCCEEEE
Q 035621 79 NIP-VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK-GDILRS---FS----------AHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 79 ~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~ 142 (387)
... .......++++|++++|+++. .+|.+.++++.. +.+... +. .......++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 333 345667899999999998886 578999999976 433222 11 12345789999999998887
Q ss_pred EeC-CCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CCc--EE
Q 035621 143 GGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL--NGT--HL 216 (387)
Q Consensus 143 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~--~~ 216 (387)
... ...|.+|++..... .-.....+. .....-+.++|+|++ ....++...+++|.++++. ++. .+
T Consensus 161 ~dlG~D~v~~~~~~~~~~--------~l~~~~~~~~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTG--------KLTPVDSIKVPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EETTTTEEEEEEE-TTS---------TEEEEEEEECSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEEEeCCCc--------eEEEeeccccccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEE
Confidence 653 45789998832100 011112222 334567889999985 2344555668899999988 442 22
Q ss_pred EEEec-------CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621 217 STVTF-------PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL 288 (387)
Q Consensus 217 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 288 (387)
..+.. ......++++|||++|+++.. .+.|.+|++...... ................++++|+|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 23321 125788999999999998865 778999999542111 11111122234458999999999999
Q ss_pred EEEe-CCCcEEEEEC--CCccEEEEeecccCCCceeEEE
Q 035621 289 VSAA-EDGSVYIWEI--EKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 289 ~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
+++. .++.|.+|++ ++|++...-....-..+.+|.|
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 8876 5678999976 5677665554344456666655
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.1e-14 Score=123.63 Aligned_cols=240 Identities=13% Similarity=-0.013 Sum_probs=150.6
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (387)
..|.++|. ++.....+..+...+.+.+|+|++...+..- .......|.+||+.+++.......+......+|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEE-ccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 46888886 4555556667788899999999765433210 122345799999988876544445566778999999998
Q ss_pred EEE-ecCCCcEEEE--eCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceE
Q 035621 98 LFT-GGLSGNVYAI--SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 98 l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
|+. .+.+|...+| |+..++ ...+..+........|+|||+.|+..+. +|...+|.+.. ... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~----------~~g-~~~ 321 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA----------SGG-AAQ 321 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC----------CCC-ceE
Confidence 874 5667765555 554444 4555555556677899999998876554 56667776521 111 122
Q ss_pred eeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC-c--EE
Q 035621 174 KFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG-L--IY 247 (387)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~--i~ 247 (387)
.+..+........|+|++ ++++..+.++ .|.+||+.+++.. .+..........|+|||++|+.++.++ . ++
T Consensus 322 ~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred EEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEEEE
Confidence 222222334457888875 7777666554 6999999887654 333333456789999999988887643 3 44
Q ss_pred EEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 248 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
+.+... .. ...+..+.+.+...+|+|-
T Consensus 399 ~~~~~g---------~~-~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 399 AVSSDG---------RI-KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEECCC---------Cc-eEEeecCCCCCCCCccCCC
Confidence 444422 11 1111234556667777763
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=3.3e-14 Score=111.38 Aligned_cols=275 Identities=14% Similarity=0.147 Sum_probs=183.4
Q ss_pred CCCcEEEEeCCCCceeE--ec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCC-C
Q 035621 16 PEGPITAYNPSSGAILA--HF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPE-P 85 (387)
Q Consensus 16 ~dg~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~-~ 85 (387)
..|.+.+|++.+.+... ++ ......+..+.|.-...-....++-+-..|.|.++..........+. ... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34788999987665443 12 12334466777763110000122335678899998775544333332 111 2
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCcee--EEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDIL--RSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 162 (387)
..++.|++.+..++++..+|.+.+-+....... +.++.|.-+.....|+. +.+.+.+|+.|+.+..||+|-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~------ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI------ 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC------
Confidence 567889999999999999999997665555443 47889999999999987 456899999999999999962
Q ss_pred CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEecCCceeEEEeCCCCC-eEEEE
Q 035621 163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVTFPCAIMGLALDPTET-DFFAA 240 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 240 (387)
+.....+..+.|...|.+|.-+|.. +.++++|+.|..|++||.+ -++++..-...+.|..+.++|.-. .++++
T Consensus 198 ----p~~~i~~n~kvH~~GV~SI~ss~~~-~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 198 ----PKTFIWHNSKVHTSGVVSIYSSPPK-PTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred ----CcceeeecceeeecceEEEecCCCC-CceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHH
Confidence 2333344467799999999887763 6899999999999999999 467777777789999999999643 33444
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEE-EEECCCc
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVY-IWEIEKR 305 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~-iwd~~~~ 305 (387)
+.-.-.++-+....... .+......+.|.+-+..-.|.....+|+|++ .|+.++ +|-.-++
T Consensus 273 CMh~G~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 273 CMHNGAKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHhcCceEEEecccccc----hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44444555555543221 1223344556777777777755556788865 466644 6654443
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=3.4e-13 Score=116.31 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=163.1
Q ss_pred CCCCCeEEEEEccCCCcccccCCCCCe-eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIPVPEPV-APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
-..++.|.+.|..+.+.+..+.....+ ..+.|+|||+++++.+.||.|.++|+.+++.+.+++. .....++++++||+
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGK 90 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTT
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCC
Confidence 456899999999999999999866554 4478999999999999999999999999999999875 34568899999999
Q ss_pred EEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeecc-------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621 139 LLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 139 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
+++++. ..+.+.++|. .+.+.++.+... ...+..+..++.. ..++++.-..+.|.+.|.
T Consensus 91 ~~~v~n~~~~~v~v~D~------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDA------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEEEETTEEEEEET------------TT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEET
T ss_pred EEEEEecCCCceeEecc------------ccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEe
Confidence 998776 6899999998 455555555432 3356677666664 235555555588988898
Q ss_pred CCCcEE--EEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEecccccccccc---------------------------
Q 035621 211 LNGTHL--STVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMH--------------------------- 260 (387)
Q Consensus 211 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~--------------------------- 260 (387)
...+.+ ..+..........|+|++++++++ ..++.|.++|..+.......
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 776543 455567788899999999988775 44667878877654321100
Q ss_pred -------------------ccceeEeecccccccEEEEEEecCCCEEEEE----eCCCcEEEEECCCccEEEEeecccCC
Q 035621 261 -------------------KGQELVTLANRHDGVVVSVMMMNEGKNLVSA----AEDGSVYIWEIEKRQVVMVLKNELAG 317 (387)
Q Consensus 261 -------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (387)
...+..........+ .-+..+|+++++.+. ...++|.++|.++.+.+..+......
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~ 316 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK 316 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence 000111111112222 556779999999987 45589999999999988888654333
Q ss_pred CceeEEEEecC
Q 035621 318 SISEMVIATGI 328 (387)
Q Consensus 318 ~v~~~~~~~~~ 328 (387)
.+..+.|+...
T Consensus 317 ~~~h~ef~~dG 327 (369)
T PF02239_consen 317 RVVHMEFNPDG 327 (369)
T ss_dssp -EEEEEE-TTS
T ss_pred cEeccEECCCC
Confidence 46666666544
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.64 E-value=6.4e-12 Score=105.95 Aligned_cols=269 Identities=15% Similarity=0.165 Sum_probs=168.3
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCcccee--ee----ccccCCCCCeEEEEEccCCCcccccCCCCCe-----
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIA--AS----HISPTTGSGSVHLYNLWSSTPLHNIPVPEPV----- 86 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~----~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v----- 86 (387)
++|.+.|..+++.+.++.....+- .+ ++|++..+ +. ++.-|-.+..|.+||..+.+.+..+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999887554443 34 88864332 21 1112237899999999999999888865443
Q ss_pred ---eeEEeccCCCEEEEec-C-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 87 ---APLATTADGSYLFTGG-L-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 87 ---~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
..++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-...+++..+ +-+.||......+...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~---- 177 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTK---- 177 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCC----
Confidence 3899999999999876 3 6899999999999988876421 2222222222211 2234444443333110
Q ss_pred CCCCCCCccceEe---eeccCCCeEE-EEEeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEe--------cCCc
Q 035621 162 TDDKNPDDLMLQK---FVAHNDSVTA-ITCCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVT--------FPCA 224 (387)
Q Consensus 162 ~~~~~~~~~~~~~---~~~~~~~i~~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~--------~~~~ 224 (387)
....... +.....++.. -.+.+. ++.++..... |+|.+.|+... +....+. .+..
T Consensus 178 ------g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 178 ------GNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred ------CceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 0000111 1010000000 033442 2455555554 99999996443 3333322 1233
Q ss_pred eeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe-
Q 035621 225 IMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA- 292 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~- 292 (387)
+.-++++|+++.+++... .+.|.++|..+ .+.+..+. -...+..++++||++ +|++..
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------GKRLRKIE--LGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC--------CeEEEEEe--CCCceeeEEECCCCCeEEEEeCC
Confidence 445999999999988532 25788999887 33333332 245789999999999 777655
Q ss_pred CCCcEEEEECCCccEEEEeec
Q 035621 293 EDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~ 313 (387)
.++.|.++|..+++.++.+..
T Consensus 320 ~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 320 GDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CCCcEEEEECcCCeEEeeecc
Confidence 678899999999999999843
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=7.6e-14 Score=109.39 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=108.4
Q ss_pred eeEEeccCCCEEEEecC----------CCcEEEEeCCC-CceeEEccC-CCCCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 035621 87 APLATTADGSYLFTGGL----------SGNVYAISVPK-GDILRSFSA-HDKPVSCLKISPDGSLLISG--GDDGVIATV 152 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 152 (387)
..+.|+++|++|++-.. -|...+|.++. ...+..+.- ..++|.+++|+|+++.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788899987765432 12345555422 233444432 34579999999999986554 467799999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGTHLSTVTFPCAIMGLA 229 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~ 229 (387)
|+ ....+..+ +...++.+.|+|.+ +++++++. .|.|.+||.++.+.+....+.. ++.++
T Consensus 89 d~-------------~~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~ 150 (194)
T PF08662_consen 89 DV-------------KGKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVE 150 (194)
T ss_pred cC-------------cccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEE
Confidence 98 23444444 35678899999985 88888875 3679999999999988877654 68999
Q ss_pred eCCCCCeEEEEcc------CCcEEEEeccc
Q 035621 230 LDPTETDFFAAGS------DGLIYKGLLKY 253 (387)
Q Consensus 230 ~~~~~~~l~~~~~------dg~i~i~d~~~ 253 (387)
|+|+|++++++.. |+.++||+...
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9999999999864 77888998753
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.62 E-value=2e-14 Score=114.98 Aligned_cols=281 Identities=17% Similarity=0.251 Sum_probs=188.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC----CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS----SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
++++++.+.|+.|-..|++.-+.+. .....+.+..|...+..+.|+- ...++++.+.|..+.---.+.+..+
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcc
Confidence 5677888899999999999888764 3445666778999999999986 3345555788888766666666666
Q ss_pred cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
..+......+++.+.-. +.+.|...|.|....+ ..-.++.++.+|.+.+.++.|.|....|++|..|..+.+||+.
T Consensus 150 g~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 150 GGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 55554444444444333 6667777777766554 3456788899999999999999999999999999999999993
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEE----------Ee-----
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST----------VT----- 220 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------~~----- 220 (387)
........+.+|...|..+...+.- ..+.+++.||.|.+||++....... ..
T Consensus 228 -----------g~~g~~~el~gh~~kV~~l~~~~~t--~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 228 -----------GRKGTAYELQGHNDKVQALSYAQHT--RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred -----------CCcceeeeeccchhhhhhhhhhhhh--eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 2344567788999999988877664 7899999999999999975432100 00
Q ss_pred ---------------c-----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621 221 ---------------F-----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280 (387)
Q Consensus 221 ---------------~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 280 (387)
| ...+...+-+ +.....+-+..-.+++-|.-........ ......+..-...|+.+.
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~--~t~LA~phei~tgItamh 371 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEE--RTPLAIPHEIKTGITAMH 371 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCC--CCccccccccccceeEEE
Confidence 0 0111111111 1112222222334454444332222111 111222212234688999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCC
Q 035621 281 MMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 281 ~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+..+-.+|+|+|.|..|+|||+..
T Consensus 372 lqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 372 LQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhhccceeecCCceEEEEEechh
Confidence 988888999999999999999864
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.62 E-value=4.5e-13 Score=119.88 Aligned_cols=224 Identities=15% Similarity=0.075 Sum_probs=145.7
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
....|.++|...........+...+...+|+|||++|+..... ..|++||+.+++... +..+...+.+++|+||++
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3456888887655554444556678899999999999887643 479999998886543 334556677899999998
Q ss_pred EEEE-EeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCC
Q 035621 139 LLIS-GGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLN 212 (387)
Q Consensus 139 ~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~ 212 (387)
.|+. .+.++ .|++||+.. . ....+..+........|+|++ +.|+..+. ++ .|.++|+.+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~------------~-~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDG------------K-QLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEEEEECCCCCccEEEEECCC------------C-CEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence 7764 44444 588888722 1 223333444444566788764 66665544 33 588888887
Q ss_pred CcEEEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
++...............|+|+|++++.++.++ .|++||+...... .+. . ........|+|+|++|+
T Consensus 312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------~l~-~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER---------VLT-D-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE---------Ecc-C-CCCCCCceECCCCCEEE
Confidence 76543333556677889999999999887765 7888887763211 111 1 11234568999999888
Q ss_pred EEeCCC---cEEEEECCCccEEEEeec
Q 035621 290 SAAEDG---SVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 290 s~~~dg---~i~iwd~~~~~~~~~~~~ 313 (387)
..+.++ .+++.+.. ++....+..
T Consensus 381 ~~~~~~~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEeCCCcEEEEEEECC-CceeeECCC
Confidence 776654 35555543 444455543
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.61 E-value=2.1e-12 Score=113.70 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=173.2
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV 86 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v 86 (387)
.+..+++++.+|.|..+|..+|+.+................. ..++.++.++.+..+|..+|+.+........+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADG------GLVFVGTEKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcC------CEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence 456788888899999999999998876654332222223332 22333678999999999999988777655544
Q ss_pred eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeE-----EEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 87 APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVS-----CLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
.+.-.. .+..++.+..+|.+..+|.++|+.+..++.....+. +... .+..++.+..++.+..+|...
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~t----- 209 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQT----- 209 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccC-----
Confidence 322111 345677788899999999999998877653322111 1111 124677888889999998843
Q ss_pred CCCCCCCccceEeeecc-C------CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 162 TDDKNPDDLMLQKFVAH-N------DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
+..+...... . .....+.-+|.-.+..++.++.+|.+..||..+++.+........ .. ....+
T Consensus 210 -------G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~--p~~~~ 279 (377)
T TIGR03300 210 -------GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QG--PAVDD 279 (377)
T ss_pred -------CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cC--ceEeC
Confidence 2221111100 0 000000001111135778888899999999999988776653221 11 22356
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
..+++++.+|.++.+|..++....... ........+... .+..|++++.+|.|+++|..+|+.+.+++.+
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~--------~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKND--------ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccc--------cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 788889999999999998754322110 000111112222 3568889999999999999999999988754
Q ss_pred c
Q 035621 315 L 315 (387)
Q Consensus 315 ~ 315 (387)
.
T Consensus 350 ~ 350 (377)
T TIGR03300 350 G 350 (377)
T ss_pred C
Confidence 3
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.1e-12 Score=110.05 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=186.3
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecc-ccCCC-----CCeEEEEEccCC
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHI-SPTTG-----SGSVHLYNLWSS 74 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~-----d~~v~vw~~~~~ 74 (387)
+.++|++|+++|.+.. ..++|++..++..+.+.... .+.++.|+|.+.++..+- .+... .-.+.+|+++++
T Consensus 39 v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred eEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence 3578999999998764 78999999888544433322 688999999555443311 11112 245779999996
Q ss_pred CcccccCCCC-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC--EEEE-----EeCC
Q 035621 75 TPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS--LLIS-----GGDD 146 (387)
Q Consensus 75 ~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d 146 (387)
.....++... .-.+..|+.|..+.+- -..+.+++|++.+.+.+. -+-|...|+.+.++|.+. .+++ .+.-
T Consensus 116 ~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 116 VQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred eehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 6665555332 2268899998764433 345779999987643322 223677899999998633 3433 3445
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--C---------CcEEEEeCCCCcE
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--D---------CTCKFWRLLNGTH 215 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d---------~~i~iwd~~~~~~ 215 (387)
+.+++|...... . ......+.|. ...-..+.|.+.+.+ +|+.++. | .++++.++....+
T Consensus 194 a~vri~~~~~~~-~------~~~~a~ksFF--kadkvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 194 ASVRIYKYPEEG-Q------HQPVANKSFF--KADKVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred cEEEEecccccc-c------cchhhhcccc--ccceeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 679999773100 0 0111111221 111123555555432 3332222 2 4688888885566
Q ss_pred EEEEecCCceeEEEeCCCCCeEEEE--ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621 216 LSTVTFPCAIMGLALDPTETDFFAA--GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
...+...++|.++.|+|+++.+++. -.-..+.+||++. ..+..+ ..++=+++-|+|.|++|+.+|-
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df---~egpRN~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDF---PEGPRNTAFFNPHGNIILLAGF 331 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeC---CCCCccceEECCCCCEEEEeec
Confidence 6666678999999999999877664 4477899999886 233332 3566788999999999998775
Q ss_pred ---CCcEEEEECCCccEEEEeecc
Q 035621 294 ---DGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 294 ---dg~i~iwd~~~~~~~~~~~~~ 314 (387)
-|.|-|||+.+.+++..+...
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred CCCCCceEEEeccchhhccccccC
Confidence 478999999999999888754
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=2.3e-12 Score=117.43 Aligned_cols=186 Identities=15% Similarity=0.215 Sum_probs=145.8
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc----eeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cccccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR----RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNI 80 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~ 80 (387)
-+...++.++.++.+.+||...+.....+....... .-+.++++.. ++++|+.-+.|.+|+.... .+.+..
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~----~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL----YIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE----EEEeccccccEEEEeccccCCcceec
Confidence 345678888888999999998877776665333221 1122344333 4445889999999998633 344456
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
.|.+.+..+.++-||.++++.+.|.++++|++++.+... ..-+|...|..+.|.|+ .+++++.|-+.++|+.
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~----- 245 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV----- 245 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-----
Confidence 688999999999999999999999999999999987765 45589999999999988 8999999999999976
Q ss_pred cCCCCCCCCccceEeeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 160 EHTDDKNPDDLMLQKFVAHND-SVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
....+..+..|.. .|..++..+.. ...+|++.|+.+++||+..
T Consensus 246 --------~~~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 --------NGTQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --------ccceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence 3444556777754 68888887774 8899999999999999854
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.2e-12 Score=114.52 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=139.3
Q ss_pred eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621 65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 141 (387)
.|.++|.+.++......+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 5778888766555455667788999999999998876533 369999998886543 333344556789999999776
Q ss_pred -EEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCCCcE
Q 035621 142 -SGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLNGTH 215 (387)
Q Consensus 142 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~ 215 (387)
+.+.+| .|++||+. .. ....+..+........|+|++ +.++..+ .++ .|.++|+.+++.
T Consensus 259 ~~~~~~g~~~Iy~~d~~------------~~-~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLA------------SR-QLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EEEccCCCceEEEEECC------------CC-CeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 444555 57778872 22 233344455555667888875 5555444 333 577788877764
Q ss_pred EEEEecCCceeEEEeCCCCCeEEEEccC-C--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 216 LSTVTFPCAIMGLALDPTETDFFAAGSD-G--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
..............|+|+|+.++..+.+ + .|+++|+.++.... +.. ........|+|||++++..+
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~---------lt~--~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI---------LTD--TSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE---------ccC--CCCCCCceECCCCCEEEEEE
Confidence 3322222334467899999999887653 3 47788877632211 111 11122458999999888765
Q ss_pred CC---CcEEEEECCCccEEEEee
Q 035621 293 ED---GSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 293 ~d---g~i~iwd~~~~~~~~~~~ 312 (387)
.+ ..|.++++.. .....+.
T Consensus 393 ~~~g~~~l~~~~~~g-~~~~~l~ 414 (430)
T PRK00178 393 RQQGRGVLMLVSING-RVRLPLP 414 (430)
T ss_pred ecCCceEEEEEECCC-CceEECc
Confidence 43 3477777753 3333443
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.9e-12 Score=108.34 Aligned_cols=306 Identities=11% Similarity=0.098 Sum_probs=195.0
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecccc--C-----CCCCeEEEEEccC
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISP--T-----TGSGSVHLYNLWS 73 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~-----~~d~~v~vw~~~~ 73 (387)
.+.|||-|.+|++-...| |.+|--.+...++.+. |.+ |.-+.|+|...++.++-.. . .....++|||+.+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 368999999999998865 8899988777777775 655 8889999966655443211 0 1235899999999
Q ss_pred CCcccccCCC---C-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC---
Q 035621 74 STPLHNIPVP---E-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD--- 146 (387)
Q Consensus 74 ~~~~~~~~~~---~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 146 (387)
|...+.+... . .-.-+.||.|++++|.-..+ .|.||+..+-.++..-.-.-..|....|+|.++.|+.=...
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 9988888752 1 23357899999999987764 59999977654443322334678899999998777643321
Q ss_pred --CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe----------CCCcEEEEeCCCCc
Q 035621 147 --GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS----------MDCTCKFWRLLNGT 214 (387)
Q Consensus 147 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~ 214 (387)
..+.+-.+ +....+++-..++ |..+.++...+|.+|+.-- .-..+.|+.++...
T Consensus 371 ~parvtL~ev------------Ps~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 371 IPARVTLMEV------------PSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred CcceEEEEec------------Cccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 12334333 3444444433333 3333333334456665421 11245666666543
Q ss_pred -EEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 215 -HLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 215 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
++..+.....|...+|-|.|+.+++-+. ..++.+|.++.... ....+..+ .....+.+.|+|.|++++.
T Consensus 437 Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~----~~~lVk~~---dk~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 437 IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK----KPSLVKEL---DKKFANTVFWSPKGRFVVV 509 (698)
T ss_pred CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC----chhhhhhh---cccccceEEEcCCCcEEEE
Confidence 4555667889999999999988776543 46788888774111 01111111 2245678999999999887
Q ss_pred E---eCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce
Q 035621 291 A---AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR 332 (387)
Q Consensus 291 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 332 (387)
+ |..|.+.++|.....+...-... ....+.+.+.+.+.-.+
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~~~~~e-h~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKDTASPE-HFAATEVEWDPTGRYVV 553 (698)
T ss_pred EEecccccceEEEecchhhhhhccCcc-ccccccceECCCCCEEE
Confidence 5 45789999998853333222222 23566676766555443
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.5e-12 Score=113.88 Aligned_cols=233 Identities=16% Similarity=0.126 Sum_probs=141.3
Q ss_pred CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621 64 GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL 140 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 140 (387)
..+.++|....+..........+....|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 36777787665554455567788999999999998876532 268999998876533 22223334578999999977
Q ss_pred EE-EeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCCCc
Q 035621 141 IS-GGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLNGT 214 (387)
Q Consensus 141 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~ 214 (387)
+. .+.+|. |+++|+. .. ....+..+.......+|+|++ +.++..+ .++ .|.++|+.+++
T Consensus 277 a~~~~~~g~~~Iy~~dl~------------tg-~~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIA------------TK-ALTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred EEEEeCCCCeEEEEEECC------------CC-CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCC
Confidence 65 556665 6666762 22 233444455556678899885 5555444 344 46677887776
Q ss_pred EEEEEecCCceeEEEeCCCCCeEEEEcc-CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 215 HLSTVTFPCAIMGLALDPTETDFFAAGS-DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
..............+|+|||++|+..+. ++ .|+++|+..+... .+... .......|+|+|++|+..
T Consensus 342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~---------~lt~~--~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ---------VLTST--RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE---------EccCC--CCCCCceECCCCCEEEEE
Confidence 4432222233445789999999888765 34 3455666553211 11111 111234799999988765
Q ss_pred eC-CC--cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 292 AE-DG--SVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 292 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
+. +| .+++++. +|+....+..+ .+.+....|+
T Consensus 411 ~~~~g~~~l~~~~~-~G~~~~~l~~~-~g~~~~p~Ws 445 (448)
T PRK04792 411 TTYQGKQVLAAVSI-DGRFKARLPAG-QGEVKSPAWS 445 (448)
T ss_pred EecCCceEEEEEEC-CCCceEECcCC-CCCcCCCccC
Confidence 54 33 3777786 45555556543 3344444443
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-12 Score=105.29 Aligned_cols=247 Identities=10% Similarity=0.131 Sum_probs=164.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCC------------CCceeEEEcCccceeeeccccCCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-----ILAHFSGSR------------SPRRGLTFAGKPFIAASHISPTTGSG 64 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~d~ 64 (387)
+.|..+|++||+|..+|.|.++.-.... ....++.|. ..|+.+.|.+.+.. ..+...+.|.
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--a~FLlstNdk 108 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--AEFLLSTNDK 108 (433)
T ss_pred EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc--cEEEEecCCc
Confidence 4688899999999999999999754322 334455554 34888888875432 2334467899
Q ss_pred eEEEEEccCCCccc-----------------------------------ccC--CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 65 SVHLYNLWSSTPLH-----------------------------------NIP--VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 65 ~v~vw~~~~~~~~~-----------------------------------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
+|++|.+....... .+. |.-.|+++.++.|+..++++ .|=.|
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRI 187 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRI 187 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceee
Confidence 99999885432111 000 33457788999999888887 56789
Q ss_pred EEEeCCCCce---eEEccCC-----CCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccc--cCCC--CCCCCccceEe
Q 035621 108 YAISVPKGDI---LRSFSAH-----DKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVD--EHTD--DKNPDDLMLQK 174 (387)
Q Consensus 108 ~i~d~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~--~~~~~~~~~~~ 174 (387)
.+|+++-... +..++.+ ..-|++..|+| ..+.++..+..|+|++-|+++... .... .....+....-
T Consensus 188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf 267 (433)
T KOG1354|consen 188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF 267 (433)
T ss_pred eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence 9999864322 2223333 34588999999 456888888999999999974211 1000 00011111122
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC-CCCcEEEEEecC-------------C---ceeEEEeCCCCCeE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL-LNGTHLSTVTFP-------------C---AIMGLALDPTETDF 237 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~-------------~---~v~~~~~~~~~~~l 237 (387)
+..--..|..+.|++++ +++++-.. -+|++||+ ...+++.+++.+ . .-..++|+-++.++
T Consensus 268 fseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v 344 (433)
T KOG1354|consen 268 FSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV 344 (433)
T ss_pred HHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence 23344678899999885 88887543 68999999 456666666521 1 23468999999999
Q ss_pred EEEccCCcEEEEecccc
Q 035621 238 FAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~ 254 (387)
++|+.....++++...+
T Consensus 345 ~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 345 MTGSYNNVFRVFNLARG 361 (433)
T ss_pred ecccccceEEEecCCCC
Confidence 99999999999996543
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=3e-13 Score=123.03 Aligned_cols=198 Identities=13% Similarity=0.149 Sum_probs=155.0
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK----PVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
.+.+....+..+.+.++.+..+..+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|+..
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--- 163 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--- 163 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---
Confidence 34555566677778899999999999999988776665543221 11223456677799999999999999984
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EEecCCceeEEEeCCCCCe
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TVTFPCAIMGLALDPTETD 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 236 (387)
.......+.+|.+.|.++.++.++ .++++.|.|.++++|++.+.+... -|.|...+..++|.|+ .
T Consensus 164 ---------~dn~p~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 164 ---------EDNKPIRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ---------ccCCcceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence 111122688999999999998875 999999999999999999987665 4568899999999998 9
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
+++++.|-+.++|+.+.. .+. .+..|. ..+..++..++...++|++.|+.+++|++....
T Consensus 231 i~t~gedctcrvW~~~~~---------~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGT---------QLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eEEeccceEEEEEecccc---------eeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999999966542 222 233454 469999999999999999999999999987643
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=3.8e-12 Score=113.95 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=139.5
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (387)
..|.++|.. +.....+..+...+....|+|++...+.. ........|.+||+.+++......+...+.+++|+|||+.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~-~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYV-SFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 358888875 44445565667778899999977655431 1122346899999988866555555666778999999987
Q ss_pred EEEe-cCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccc
Q 035621 98 LFTG-GLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 98 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
|+.. +.++ .|++||+.+++.. .+..+........|+|+++.|+..+. ++ .|+++|+. .. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~------------~~-~ 313 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD------------GG-E 313 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC------------CC-C
Confidence 7643 4443 6899999877643 44445555567799999998876654 33 46666662 11 2
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 244 (387)
...+..+........|+|++ ++++.++.++ .|.+||+.++.. ..+..........|+|++++|+..+.++
T Consensus 314 ~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 23344455566778888875 7777777665 789999987654 3333333345668999999988877654
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=2.6e-12 Score=110.17 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=159.9
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE 84 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~ 84 (387)
.|-..++|....||.++|||..+++....|.. .+. .+..++-..|.+.-+..........
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~----~s~t~~~~~w~L~~~~s~~k~~~~~ 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IAS----LSGTCTYTKWGLSADYSPMKWLSLE 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc----------------chh----ccCcceeEEEEEEeccchHHHHhHH
Confidence 45678999999999999999999888776642 111 2334445556543221111110001
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 162 (387)
.+. .-+.+-..++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.
T Consensus 62 ~~~--~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~-------- 131 (541)
T KOG4547|consen 62 KAK--KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE-------- 131 (541)
T ss_pred HHh--hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec--------
Confidence 111 112345578889999999999999999888776 68899999999998899999999999999998
Q ss_pred CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC-----CCe
Q 035621 163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT-----ETD 236 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~ 236 (387)
.....+..+...+..+.+++++|++ ..+++++ +.|++||+++++.+..|+ |.++|+++.|..+ |.+
T Consensus 132 ----~~~~~~~~~~~~~~~~~sl~is~D~--~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 132 ----KEKVIIRIWKEQKPLVSSLCISPDG--KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred ----ccceeeeeeccCCCccceEEEcCCC--CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 6777788888888999999999884 8888886 689999999999999998 7789999999877 666
Q ss_pred EEEE-ccCCcEEEEeccc
Q 035621 237 FFAA-GSDGLIYKGLLKY 253 (387)
Q Consensus 237 l~~~-~~dg~i~i~d~~~ 253 (387)
++++ ..+..+.+|-...
T Consensus 204 vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeccccccceeEEEEEc
Confidence 6665 4467788887765
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=7.7e-12 Score=106.71 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=175.4
Q ss_pred ccccCCCcEEEee-----C-----CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTS-----S-----PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~-----~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
|.|||-|++|.+= . ..-.+.+|+++++.....++.....-++..|+.+..+.+. -..+.+++|+.
T Consensus 79 L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-----lv~nev~f~~~ 153 (566)
T KOG2315|consen 79 LLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-----LVSNEVQFYDL 153 (566)
T ss_pred eeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-----hhcceEEEEec
Confidence 5689999988872 1 1245789999997666666543333368889887665542 24678999998
Q ss_pred cCCCcccccCCCCCeeeEEeccCC--CEEEE-----ecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCC-EE
Q 035621 72 WSSTPLHNIPVPEPVAPLATTADG--SYLFT-----GGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGS-LL 140 (387)
Q Consensus 72 ~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~l 140 (387)
.+.+.+...-+...+..+.++|.+ ..+|+ .+.-+.+++|.......-..+ .-....=..+.|++-|. +|
T Consensus 154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALL 233 (566)
T ss_pred CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEE
Confidence 775444444456789999999863 33443 234458999987632211111 01122334677888666 33
Q ss_pred E--EEeCCC---------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621 141 I--SGGDDG---------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR 209 (387)
Q Consensus 141 ~--~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd 209 (387)
+ +..-|. ++++.++ ........ -...++|.++.|++++..--++-|-.--.+.|||
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t------------~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLAT------------QGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEe------------cCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 3 222333 4666666 21112222 2347899999999997333344555677899999
Q ss_pred CCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 210 LLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
++ +.++..+ .+++=+++-|+|.|++++.++- .|.|-+||..+.. .+..+ ....-+-+.|+|||+
T Consensus 301 lr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------~i~~~---~a~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 301 LR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------LIAKF---KAANTTVFEWSPDGE 367 (566)
T ss_pred CC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--------hcccc---ccCCceEEEEcCCCc
Confidence 75 4455444 3566788999999999988765 5899999998722 22221 223446789999999
Q ss_pred EEEEEeC------CCcEEEEECCCc
Q 035621 287 NLVSAAE------DGSVYIWEIEKR 305 (387)
Q Consensus 287 ~l~s~~~------dg~i~iwd~~~~ 305 (387)
+|+|++. |+.++||+....
T Consensus 368 ~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEEeccccEEecCCeEEEEecCc
Confidence 9998764 788999997643
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=7.2e-14 Score=133.35 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=155.2
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISV 112 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 112 (387)
+.+-..|.++.-+| ...+.++|+.||.+++|....++.+..+. .+..|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 34555677777777 44455669999999999998888877776 3467999999999999999999999999998
Q ss_pred CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
. .++....+.|....+.+.|-. ..+++++ .++.+.+||.... +....+. ..|.+.++++++.|
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---------~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---------PMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC---------cccceee--eecCCCceEEEEcC
Confidence 5 667777888999999999965 5666665 4688999998321 2223333 78999999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 255 (387)
.. ++|++|+.+|.|++||++..+.++.++. ++ ...++++|+..|.|+||++....
T Consensus 2347 ~~--qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2347 KH--QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cc--eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc
Confidence 86 9999999999999999998887777653 44 56789999999999999998743
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-11 Score=109.97 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=148.3
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceee-eccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA-SHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS 96 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (387)
..|.+.|...+. .+.+.........-.|+|++.-.+ .++........|.+.++.+++.......++.....+|+|||+
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 468888875443 444655566677889999753211 111112234578888998887655555566667789999999
Q ss_pred EEEEecC-CC--c--EEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCC
Q 035621 97 YLFTGGL-SG--N--VYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 97 ~l~~~~~-dg--~--i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
.|+..+. +| . +..|++..+ +.......+.......+|+|||+.|+..+ .+|...+|.+.-. .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~---------~ 314 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID---------P 314 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc---------c
Confidence 8886542 22 3 344676642 33333323333456789999999777665 5665555543100 0
Q ss_pred CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc--
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-- 242 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 242 (387)
.......+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..........+....|+|||+.|+....
T Consensus 315 ~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 315 EGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred cccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC
Confidence 111233344444566788899986 666655443 4699999998876543333446778999999998876543
Q ss_pred -CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 243 -DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 243 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
...|+++++..+.. ..+. ...+.+...+|+|-
T Consensus 393 g~~~L~~vdl~~g~~---------~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 393 NESELYLISLITKKT---------RKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CCceEEEEECCCCCE---------EEee-cCCCcccCceecCC
Confidence 35678888765321 1111 23344566777764
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.3e-12 Score=114.55 Aligned_cols=280 Identities=12% Similarity=0.101 Sum_probs=188.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc---------------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA---------------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV 66 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v 66 (387)
++|+.+..++|.|+.||.++|..+.+.. .-+++.||...|.-+.|+.. ...+.++..+|.|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~----~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN----NQKLTTSDTSGLI 95 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc----cccccccCCCceE
Confidence 4688899999999999999999875421 12467899999999999983 3445558899999
Q ss_pred EEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEccCCCCCeEEEEEcCCCCEEEE
Q 035621 67 HLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 67 ~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
.+|-+-.+......- ..+.|.+++|+.+|..++....||.|.+=.+...+.- +.++ ......+.|++|.+.++.
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHh
Confidence 999998886554443 4467999999999999999999999888776443321 1122 223457899999999888
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC------CCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG------SFNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
+-.+|.+.++|............. .-.....+......|..+.|... ++...|+.+...|.+.|..-.+....
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c-~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDC-EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhce-EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 989999999998433221100000 00000011111223445555321 13478999999999999877766666
Q ss_pred EEEecCCceeEEEeCCCCCeEEEEccCC---------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621 217 STVTFPCAIMGLALDPTETDFFAAGSDG---------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
..+..+..+....|+++|..|++++.+. .|.+|.. .......++.....|++++|-..|-.
T Consensus 253 vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp----------~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 253 VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP----------YGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc----------chhheEEEecCCceeeeeEEcCCceE
Confidence 6677778899999999999999998753 2333221 12333334455677888888766655
Q ss_pred EEEEeCCCcEEE
Q 035621 288 LVSAAEDGSVYI 299 (387)
Q Consensus 288 l~s~~~dg~i~i 299 (387)
++.+ .|+.|++
T Consensus 323 iA~A-vdsfiyf 333 (1189)
T KOG2041|consen 323 IAIA-VDSFIYF 333 (1189)
T ss_pred EEEE-ecceEEE
Confidence 5543 3444433
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.5e-11 Score=108.80 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=135.4
Q ss_pred cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621 19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL 98 (387)
Q Consensus 19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 98 (387)
.|.++|...+. ...+..+...+....|+|++...+.. ........|.+|++.+++........+......|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~-s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYV-SFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEE-EcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence 48888876444 45555677788999999976543321 11122357999999888665544445556679999999988
Q ss_pred EE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccce
Q 035621 99 FT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 99 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
+. ...+| .|++||+.+++.. .+..+........|+||++.++..+. +| .|+++|+. .+. .
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~------------~g~-~ 323 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN------------GGR-A 323 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC------------CCC-E
Confidence 74 44444 6888999887654 45555556677899999997766553 44 46666662 121 1
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC-C--cE
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD-G--LI 246 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i 246 (387)
..+...........|+|++ +.++..+. ++ .|.+||+.+++. ..+..........|+|+|+.++..+.+ | .+
T Consensus 324 ~~lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred EEeecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 2222112223356788875 66665554 33 588899988764 333332233456899999998887653 3 35
Q ss_pred EEEecc
Q 035621 247 YKGLLK 252 (387)
Q Consensus 247 ~i~d~~ 252 (387)
++++..
T Consensus 401 ~~~~~~ 406 (430)
T PRK00178 401 MLVSIN 406 (430)
T ss_pred EEEECC
Confidence 555554
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=3.7e-11 Score=101.50 Aligned_cols=276 Identities=18% Similarity=0.128 Sum_probs=185.6
Q ss_pred ccccCCCcEEEeeCCC---------------CcEEEEeCCCCceeEeccCCCCC--ce-eEEEcCccceeeeccccCCCC
Q 035621 2 LHHLPCNEVILTSSPE---------------GPITAYNPSSGAILAHFSGSRSP--RR-GLTFAGKPFIAASHISPTTGS 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~~~~d 63 (387)
+.|||.+++|.+=+.. +.+.+||..+|..+..+.....+ .+ -+.|+-+..+.+.. ..
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----v~ 151 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----VG 151 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----cc
Confidence 5799999999985433 35999999999999999876666 55 56777655554431 34
Q ss_pred CeEEEEEccCCCcc-cccC--CCCCeeeEEeccCC--CEEEE-----ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621 64 GSVHLYNLWSSTPL-HNIP--VPEPVAPLATTADG--SYLFT-----GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKI 133 (387)
Q Consensus 64 ~~v~vw~~~~~~~~-~~~~--~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 133 (387)
..+.++++ ++... ..+. ....+....|+|.+ ..|+. .+..+.+++|.+..+..+.+..-....=..+.|
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 57899997 33221 1111 13578889999964 34443 346678999999877666544333333356888
Q ss_pred cCCCCEEEEEe-----------CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621 134 SPDGSLLISGG-----------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 134 ~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
++.|++++.-- ....++++++. ...+.......++|...+|.|.+++--+++|-.+
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p 297 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP 297 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeec-------------ccccceeccccccceeeeecccCCceeEEecccc
Confidence 88888665421 12457777772 1222222255789999999999855555666788
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
..+.++|++.. +..+-.+..=+.+.|+|.+++++.++- .|.|.+||... .......+ ......-+
T Consensus 298 a~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~--------rf~~~~~~--~~~n~s~~ 365 (561)
T COG5354 298 ASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG--------RFKVAGAF--NGLNTSYC 365 (561)
T ss_pred cceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC--------ceEEEEEe--ecCCceEe
Confidence 99999999876 333334555567889999999998765 57899998875 22222121 12334567
Q ss_pred EEecCCCEEEEEe------CCCcEEEEECCCccEE
Q 035621 280 MMMNEGKNLVSAA------EDGSVYIWEIEKRQVV 308 (387)
Q Consensus 280 ~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~ 308 (387)
.|+||++++.+.. .|..|+|||+...+.-
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 8999999888753 4788999998765443
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.9e-11 Score=106.35 Aligned_cols=228 Identities=12% Similarity=-0.011 Sum_probs=137.1
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE---EEecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL---FTGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (387)
...|.+.|.+.++.............-.|+|||+.+ ++...+| .|.+.++.+++... +....+.....+|+|||
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 346777787666554444455667788999999752 2444443 68888988776433 22334455678999999
Q ss_pred CEEEEEeC-CC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEE--e
Q 035621 138 SLLISGGD-DG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFW--R 209 (387)
Q Consensus 138 ~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iw--d 209 (387)
+.|+..+. +| .+..|++... ...........+.......+|+|++ +.|+..+ .+|...+| +
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g---------~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETG---------AIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccC---------CCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEE
Confidence 88876553 23 2334555210 0111222222222334567899886 6555544 46655555 4
Q ss_pred CCC-CcEEEEEe-cCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 210 LLN-GTHLSTVT-FPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 210 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
+.. +.....+. ....+....|+|||+.|+..+.+ ..|++||+..+... .+. .....+....|+||
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---------~Lt-~~~~~~~~p~wSpD 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---------QLT-TSPENKESPSWAID 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---------Ecc-CCCCCccceEECCC
Confidence 432 23334443 33566788999999988876543 46889998764321 111 12234567899999
Q ss_pred CCEEEEEeC---CCcEEEEECCCccEEEEee
Q 035621 285 GKNLVSAAE---DGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 285 ~~~l~s~~~---dg~i~iwd~~~~~~~~~~~ 312 (387)
|+.|+.... ...|++||+.+++......
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 998875432 3568999998887654443
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.6e-10 Score=97.81 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=151.2
Q ss_pred ccccCCCcEEEeeCC----CCcEEEEeCCCC--c--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSP----EGPITAYNPSSG--A--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~ 73 (387)
|+++|++++|.+... +|.|..|++... + .+.+..........++++|++.++.. +...+|.+.++++..
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v---any~~g~v~v~~l~~ 118 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV---ANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE---EETTTTEEEEEEECT
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE---EEccCCeEEEEEccC
Confidence 678999999888765 568999887653 3 33334323344567888886543322 134689999999976
Q ss_pred C-Ccccc---cC-----------CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCc--ee--EEcc-CCCCCeEEEE
Q 035621 74 S-TPLHN---IP-----------VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGD--IL--RSFS-AHDKPVSCLK 132 (387)
Q Consensus 74 ~-~~~~~---~~-----------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~ 132 (387)
. ..... +. ......++.++|+++++++.. ....|.+|++.... +. ..+. ......+.++
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 3 22221 11 224578899999999888864 33479999987654 32 2222 3456789999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEE-EeCCCc
Q 035621 133 ISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIIS-CSMDCT 204 (387)
Q Consensus 133 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s-~~~d~~ 204 (387)
|+|+++++++.. .++.|.++++.... .....+..... .......|+++|++ ++|++ ...+.+
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg--~~lyvsnr~~~s 268 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSD--------GSLTEIQTISTLPEGFTGENAPAEIAISPDG--RFLYVSNRGSNS 268 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTT--------TEEEEEEEEESCETTSCSSSSEEEEEE-TTS--SEEEEEECTTTE
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccC--------CceeEEEEeeeccccccccCCceeEEEecCC--CEEEEEeccCCE
Confidence 999999876665 56789999884100 01111121111 11256788899886 55554 445788
Q ss_pred EEEEeCC--CCc--EEEEEec-CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621 205 CKFWRLL--NGT--HLSTVTF-PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKY 253 (387)
Q Consensus 205 i~iwd~~--~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 253 (387)
|.+|++. +++ .+..+.. ......++++|+|++|+++.. ++.|.+|++..
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 9999993 233 3334443 455899999999999998875 77899998864
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.9e-11 Score=107.26 Aligned_cols=236 Identities=13% Similarity=0.077 Sum_probs=140.5
Q ss_pred cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621 19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL 98 (387)
Q Consensus 19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 98 (387)
.|.++|.. |...+.+..+...+....|+|++...+.. ........|.+||+.+++.......+......+|+|||+.|
T Consensus 199 ~l~i~d~d-G~~~~~l~~~~~~~~~p~wSPDG~~La~~-s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLRSPEPLMSPAWSPDGRKLAYV-SFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCC-CCCceEeecCCCcccCceECCCCCEEEEE-EecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 57777864 43344555667788999999976543321 00122346889999887654433334445678999999988
Q ss_pred EE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEeCCcccccCCCCCCCCccce
Q 035621 99 FT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DGV--IATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 99 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
+. ...+| .|+++|+.+++. ..+..+.......+|+||++.++..+. ++. |.++|+. .+. .
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~------------~g~-~ 342 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA------------SGK-V 342 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC------------CCC-E
Confidence 75 45555 488889887764 444445556678899999998766553 444 5555552 221 2
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCc--E
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGL--I 246 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i 246 (387)
..+..........+|+|++ ++++..+. ++ .|.++|+.+++.. .+..........|+|+|+.|+.... ++. +
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred EEEecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 2222222223456788886 56555444 44 4566788777643 3332222234589999998877655 333 5
Q ss_pred EEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
++++... ..... +..+.+.+...+|+|
T Consensus 420 ~~~~~~G---------~~~~~-l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDG---------RFKAR-LPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEECCC---------CceEE-CcCCCCCcCCCccCC
Confidence 5666532 11111 223445566777776
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.8e-11 Score=103.20 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=173.9
Q ss_pred ccccCCCcEEEeeCC-----------CCcEEEEeCCCCceeEeccCC--CCCcee-EEEcCccceeeeccccCCCCCeEE
Q 035621 2 LHHLPCNEVILTSSP-----------EGPITAYNPSSGAILAHFSGS--RSPRRG-LTFAGKPFIAASHISPTTGSGSVH 67 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~ 67 (387)
+.|||+.++|+|-+. ...++|||+.+|...+.+... ...+.. ..|+.+..+.+.. ....|.
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-----~~~sis 329 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-----TGNSIS 329 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe-----ccceEE
Confidence 679999999999652 246999999999998888753 223333 4788877777642 237899
Q ss_pred EEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621 68 LYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 68 vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 141 (387)
||+..+..++..-. ....|..+.|+|.++.||.-... ..+.+..+.+++.+++.+-|.-.=..+.|-.+|.+|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 99876654443333 23679999999999988865422 3678888888888887766654445677777888877
Q ss_pred EEeC-------CC---cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEE
Q 035621 142 SGGD-------DG---VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFW 208 (387)
Q Consensus 142 ~~~~-------dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iw 208 (387)
.--. -| .+.|+.++. ...++..+ .-...|...+|-|.+ +.+++-+. ..++.+|
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrire-----------KdIpve~v-elke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIRE-----------KDIPVEVV-ELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFY 475 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeec-----------cCCCceee-ecchheeeeeeccCC--CeEEEEEccccccceeEE
Confidence 5321 12 244444421 22222222 345677788888886 44443332 3578888
Q ss_pred eCCC-Cc---EEEEEecCCceeEEEeCCCCCeEEEE---ccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 209 RLLN-GT---HLSTVTFPCAIMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 209 d~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
-+++ .. .+..+. ....+.+.|+|.|++++++ +..|.+..+|.......... .......+.+.|
T Consensus 476 ~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---------~~eh~~at~veW 545 (698)
T KOG2314|consen 476 AVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA---------SPEHFAATEVEW 545 (698)
T ss_pred EeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc---------CccccccccceE
Confidence 8873 22 233332 3567889999999998886 45789999998862221111 112234678899
Q ss_pred ecCCCEEEEEeCC
Q 035621 282 MNEGKNLVSAAED 294 (387)
Q Consensus 282 s~~~~~l~s~~~d 294 (387)
.|.|+|+++++.-
T Consensus 546 DPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 546 DPTGRYVVTSSSS 558 (698)
T ss_pred CCCCCEEEEeeeh
Confidence 9999999998754
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=1.1e-10 Score=98.60 Aligned_cols=281 Identities=14% Similarity=0.161 Sum_probs=183.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccc-----------cCCCCCeEEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS-----------PTTGSGSVHLYN 70 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~d~~v~vw~ 70 (387)
.+|||.|.+|++.... .|.+|....+..+..+. |. .|..+.|+|.+.++..+-- --..++.+.+||
T Consensus 38 ~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd 114 (561)
T COG5354 38 VSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD 114 (561)
T ss_pred eeecCcchheehhhcc-ceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence 4799999999998875 59999988877666664 33 3888999997766654321 112344699999
Q ss_pred ccCCCcccccCCCC-C--ee-eEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEccCC-CCCeEEEEEcCCCC--EEEE
Q 035621 71 LWSSTPLHNIPVPE-P--VA-PLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFSAH-DKPVSCLKISPDGS--LLIS 142 (387)
Q Consensus 71 ~~~~~~~~~~~~~~-~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~v~~~~~~~~~~--~l~~ 142 (387)
..++..+..+.... + .. -+.|+.+.+++|-- ....++++++ ++... ..+..- ...|....|+|.++ .|+.
T Consensus 115 ~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~ 192 (561)
T COG5354 115 IASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAY 192 (561)
T ss_pred ccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEE
Confidence 99999888877432 2 23 67888888877655 3456999997 43321 111111 35688889999643 3332
Q ss_pred -----EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-----------CCCcEE
Q 035621 143 -----GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-----------MDCTCK 206 (387)
Q Consensus 143 -----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-----------~d~~i~ 206 (387)
.+..+++++|.+ +....+.+..--...-..+.|.+.+ ++|+.-- ....+.
T Consensus 193 ~tPEk~~kpa~~~i~sI------------p~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 193 WTPEKLNKPAMVRILSI------------PKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EccccCCCCcEEEEEEc------------cCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeecccceeccceEE
Confidence 456788999988 2222222221111122235555543 4333211 124688
Q ss_pred EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
++++....+.-.....++|...+|.|.++.+++.+ .+..+.++|++.. +... .....=+.+.|+|.
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~--~Pe~~rNT~~fsp~ 326 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFY--FPEQKRNTIFFSPH 326 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc----------eEEe--cCCcccccccccCc
Confidence 88887555444445678999999999998877655 5888999998862 2211 23444567889999
Q ss_pred CCEEEEEeCC---CcEEEEECCCccEEE-Eeec
Q 035621 285 GKNLVSAAED---GSVYIWEIEKRQVVM-VLKN 313 (387)
Q Consensus 285 ~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~ 313 (387)
+++++.++-| |.+-+||...+..+. .+.+
T Consensus 327 ~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~ 359 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG 359 (561)
T ss_pred ccEEEEecCCccccceEEeccCCceEEEEEeec
Confidence 9999998765 689999988776554 5554
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.6e-09 Score=87.03 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=184.7
Q ss_pred CCcEEEEeCCCC--ce-eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcc--cccCC-CCCeee
Q 035621 17 EGPITAYNPSSG--AI-LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPL--HNIPV-PEPVAP 88 (387)
Q Consensus 17 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~--~~~~~-~~~v~~ 88 (387)
+.-|++|++.+. +. ...+-.+.+.++-|+|+|+...+... .--+.+|.|..|.++. |+.. ..... ..+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v-~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVV-NEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEE-EecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 466999998732 21 12223466678899999976333221 1134478888888764 4322 22222 234588
Q ss_pred EEeccCCCEEEEecC-CCcEEEEeCCC-CceeE--EccCCCCC----------eEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 035621 89 LATTADGSYLFTGGL-SGNVYAISVPK-GDILR--SFSAHDKP----------VSCLKISPDGSLLISGGD-DGVIATVP 153 (387)
Q Consensus 89 ~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd 153 (387)
++++++|++++++.. .|.|.++-++. |.+.. .+..|.+. +....+.|++++|++.+- --.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999999998864 47899998855 43221 12234444 788999999999988863 34688999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCC-cEEEEEe----------c
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNG-THLSTVT----------F 221 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~----------~ 221 (387)
+..... .......+ .....-+.|.|+|++ ++.+... .+++|.+|..... ..+..++ .
T Consensus 174 ~~dg~L--------~~~~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 174 LDDGKL--------TPADPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred cccCcc--------cccccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 842110 00111111 334566789999986 6655444 4899999998873 2232222 2
Q ss_pred CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-cEEE
Q 035621 222 PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-SVYI 299 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~i 299 (387)
......+.++|||++|.++.. ...|.+|.+...... .........+........|++.|++|+++..++ .|.+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEE
Confidence 356778999999999999876 457888887764321 122222234555578899999999999887654 6888
Q ss_pred EECC--CccEEEEeecccCCCceeEEE
Q 035621 300 WEIE--KRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 300 wd~~--~~~~~~~~~~~~~~~v~~~~~ 324 (387)
|.++ +|++-..........+.+|.|
T Consensus 318 f~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 318 FERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEEcCCCceEEecccccCCCCcEEEEE
Confidence 8654 566655444344445556655
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=3e-12 Score=102.73 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=150.8
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----eeEEccCC------------CCCeEEEEEcCCCC--EEEEE
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----ILRSFSAH------------DKPVSCLKISPDGS--LLISG 143 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~ 143 (387)
.+-+.++.|...|.+|++|..+|.|.++.-.... ....++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999753322 22334344 24578899988654 67788
Q ss_pred eCCCcEEEEeCCcccccCCCC----CC--------------C-----CccceEe-eeccCCCeEEEEEeeCCCCceEEEE
Q 035621 144 GDDGVIATVPIFQLVDEHTDD----KN--------------P-----DDLMLQK-FVAHNDSVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~----~~--------------~-----~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~ 199 (387)
+.|.+|++|.++......... .. + ...+.+. -.+|.-.|++|.+..+. ..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lSA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLSA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEeec
Confidence 899999999985432111000 00 0 0001111 13577788999887664 667665
Q ss_pred eCCCcEEEEeCCCCcE-EEEEe---c-----CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccc-------cc
Q 035621 200 SMDCTCKFWRLLNGTH-LSTVT---F-----PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMH-------KG 262 (387)
Q Consensus 200 ~~d~~i~iwd~~~~~~-~~~~~---~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~ 262 (387)
.|=.|.+|++.-... ..... + ..-|++..|+|.. +.++-.+..|.|++.|++........ ..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 578899999874332 22222 1 2358899999975 56677788999999999854322111 11
Q ss_pred ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCccEEEEeecc
Q 035621 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI-EKRQVVMVLKNE 314 (387)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~ 314 (387)
.....++..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 1122223333456899999999999998754 48999999 456777777765
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.5e-11 Score=106.68 Aligned_cols=298 Identities=13% Similarity=0.155 Sum_probs=195.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccc----e----eeeccccCCCCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPF----I----AASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----~----~~~~~~~~~~d~~v~vw~~~~ 73 (387)
+.|+|.| ++|.|+. ..|.+-|..+.+.++.+..|...|+.+.|.|... + ..-.++++...|.|.+||...
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 4577777 7788775 5799999999999999999999999999987321 1 122567788899999999999
Q ss_pred CCcccccCCC-CCeeeEEeccC---C-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 035621 74 STPLHNIPVP-EPVAPLATTAD---G-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDG 147 (387)
Q Consensus 74 ~~~~~~~~~~-~~v~~~~~~~~---~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 147 (387)
+..+..++++ .++..++|-+. . ..|++-.....+.+|+..+|+.............|+.+.| |.+.+..-+..|
T Consensus 99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 9888888754 68899999773 3 4566666778999999999999988876677788899999 677777777778
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeeccCC----------------C---------eEEEEEeeCCCCceEEEEeCC
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND----------------S---------VTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------i~~~~~~~~~~~~~l~s~~~d 202 (387)
.+.+-+.....+.. ..++..+....|.+ . ...++|+|.- +-++-....
T Consensus 179 ~vl~~~~l~~sep~-----~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~p 251 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPD-----VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFP 251 (1062)
T ss_pred eEEEEeccCCCCCC-----CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEec
Confidence 77776653221111 01111111111111 0 1123456654 223333456
Q ss_pred CcEEEEeCCCCcEEEEEecC-CceeEEEeCCCC--CeEEEEccCCcEEEEecccccccccccc--------ceeEeeccc
Q 035621 203 CTCKFWRLLNGTHLSTVTFP-CAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKG--------QELVTLANR 271 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~ 271 (387)
..+.++|++-..++..+..+ +.+.-+.+-|++ ..|++...||.+.+|-.+.......... .+......-
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m 331 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM 331 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence 78999999999898888744 344555565554 6799999999999998776433222111 111111001
Q ss_pred ccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEE
Q 035621 272 HDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 272 ~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
.+..+......|. ...++.--.+|.+.+|.+.+|+.-
T Consensus 332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1122223333444 334444456788999999977553
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.1e-09 Score=87.64 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=152.4
Q ss_pred CCeEEEEEccCC----CcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCC--Ccee--EEccCCCCCeEEE
Q 035621 63 SGSVHLYNLWSS----TPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPK--GDIL--RSFSAHDKPVSCL 131 (387)
Q Consensus 63 d~~v~vw~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~--~~~~--~~~~~~~~~v~~~ 131 (387)
+.-|.+|++.+. ..+......+.++-++|+|++++|+++..+ |.|..|.+.. |++. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 667999999733 334444566789999999999999988644 6677776653 5432 2222223445889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC----------eEEEEEeeCCCCceEEEEe
Q 035621 132 KISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS----------VTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 132 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~s~~ 200 (387)
++++++++++++.. .|.|.++.++..- ..........|.++ +....+.|++ ++|++..
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG---------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~D 163 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADG---------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPD 163 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCC---------ccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEee
Confidence 99999999998874 5789999884321 11111122223333 6677778875 7887775
Q ss_pred C-CCcEEEEeCCCCcEEEE----EecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecc--cc
Q 035621 201 M-DCTCKFWRLLNGTHLST----VTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLAN--RH 272 (387)
Q Consensus 201 ~-d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~ 272 (387)
. --.|.+|++..++.... ++.....+.+.|+|++++..+.++ +++|.+|........ ....+.+..+.. ..
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~-~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK-FEELQTIDTLPEDFTG 242 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce-EEEeeeeccCccccCC
Confidence 4 24699999997764332 235678899999999999999887 999999999874111 000111111111 12
Q ss_pred cccEEEEEEecCCCEEEEEeC-CCcEEEEECCC
Q 035621 273 DGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEK 304 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~ 304 (387)
......+..++||++|.++.. ...|.+|.+..
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 345678889999999988742 33788888765
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=9.8e-11 Score=100.73 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=144.8
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeEEccCC---CCCeEEEEE--------------------cCCCCEEEEEeCCCcE
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAH---DKPVSCLKI--------------------SPDGSLLISGGDDGVI 149 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~--------------------~~~~~~l~~~~~dg~i 149 (387)
|...++|....||.+++||...++....+... .+..++..| +.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999988876666421 233344444 1233467888889999
Q ss_pred EEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM 226 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~ 226 (387)
.+|++ ..+.....+ ..|.+.|+++.++... ..|.+++.|+.+..|+......++.+. .+..+.
T Consensus 83 ~~ys~------------~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 83 LLYSV------------AGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEEe------------cCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 99998 344444444 4688999999887665 789999999999999999999888887 567789
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-----CCEEEEE-eCCCcEEEE
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-----GKNLVSA-AEDGSVYIW 300 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~-~~dg~i~iw 300 (387)
+++++||+..+++++ +.|.+||+++ .++...+.+|.++|.+++|..+ |.+++++ ..+..+.+|
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 999999999999886 5799999997 4556666799999999999876 6666654 456678888
Q ss_pred ECCC
Q 035621 301 EIEK 304 (387)
Q Consensus 301 d~~~ 304 (387)
-+..
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 7655
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=2.5e-11 Score=97.56 Aligned_cols=250 Identities=17% Similarity=0.247 Sum_probs=173.6
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCcccccC--CCCCeeeEEeccCCCEEEEecCCC
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSG 105 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg 105 (387)
..+..++||.+.+++...-|. ...+.+.+.|.++++|-- +.++.-..+. -+.+++++.+.++...|++|-.+|
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCchhhhhhheeccC----CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 446677889988888877772 223344789999999943 4455444454 457899999999999999999999
Q ss_pred cEEEEeCC----CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 106 NVYAISVP----KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 106 ~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
++.-+.+. .....+....|...+..+-|+-...++++.+.|..+ .|...+ .+..+..+.- ..+
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e-----------~~~~lg~Y~~-~~~ 157 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTE-----------SGNRLGGYNF-ETP 157 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeec-----------cCCcccceEe-ecc
Confidence 99888763 334556667899999999999988999999999876 343311 1111110000 000
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLL--NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ 258 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 258 (387)
-+++.+. - .+...|...|.|..-.+. .-.++.++. +...+.+++|.|....+++|..|..+.+||+.-.
T Consensus 158 ~t~~~~d--~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~---- 229 (404)
T KOG1409|consen 158 ASALQFD--A--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR---- 229 (404)
T ss_pred CCCCcee--e--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC----
Confidence 0001000 0 123334444554443332 334555555 7789999999999999999999999999999762
Q ss_pred ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
......+.+|...|..++.-+.-+.+.+++.||.|.+|+.+..+.
T Consensus 230 ----~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 230 ----KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred ----cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 233334558999999999888889999999999999999876543
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=1.9e-09 Score=91.13 Aligned_cols=237 Identities=11% Similarity=0.055 Sum_probs=150.5
Q ss_pred ccCCCcEEEeeCC----------CCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCCeE
Q 035621 4 HLPCNEVILTSSP----------EGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSGSV 66 (387)
Q Consensus 4 ~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~~v 66 (387)
+||||+.|+++.. +..|.+||+.+.+.+.++..... ....++++|++..+.- .--+.+..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V--~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF--YQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEE--ecCCCCCEE
Confidence 7999998877655 78899999999999988864322 2347888887654321 113458999
Q ss_pred EEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-Ccee-EE---ccCCCCCeE-EEEEcC-CCCE
Q 035621 67 HLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDIL-RS---FSAHDKPVS-CLKISP-DGSL 139 (387)
Q Consensus 67 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~---~~~~~~~v~-~~~~~~-~~~~ 139 (387)
.+.|+.+++.+..+..+....-...+.+..++.+ .||......+.+ ++.. .. +.....++. .-.|.+ ++++
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~--~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC--RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe--ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999999998887664444444433333222 344444433322 2211 11 111000000 004455 8888
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-------ccCCCeEEEEEeeCCCCceEEEEe----------CC
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-------AHNDSVTAITCCIGSFNSIIISCS----------MD 202 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~~----------~d 202 (387)
+++..+ |.|.+.|+..... ........+. -..+.+.-+++++++ +.++... ..
T Consensus 209 ~~vs~e-G~V~~id~~~~~~-------~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg--~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDA-------KFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR--DRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred EEEecC-CeEEEEecCCCcc-------eecceeeeccccccccccCCCcceeEEEcCCC--CEEEEEecCCccccccCCC
Confidence 877777 9999999632110 0111111111 123344458888886 4444422 12
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621 203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ 254 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~ 254 (387)
+.|.++|..+++.+..+.....+..++++||++ .|++.. .++.|.++|..+.
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 579999999999999999999999999999999 888776 4788999998873
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.40 E-value=4.3e-10 Score=99.13 Aligned_cols=257 Identities=14% Similarity=0.141 Sum_probs=155.5
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV 86 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v 86 (387)
++..++.++.+|.++.+|..+|+.+................. ..++.++.++.+..||.++++.+..+....+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~------~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVAN------GLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEEC------CEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 466788888899999999999998876653222111111112 22333567899999999999887776644332
Q ss_pred eeEE--ecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCC----C---eEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 035621 87 APLA--TTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK----P---VSCLKISP--DGSLLISGGDDGVIATVP 153 (387)
Q Consensus 87 ~~~~--~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd 153 (387)
..+. -+| .+..++.+..+|.+..+|+++|+.+........ . ...+.-+| .+..++.++.+|.++.||
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1110 011 234678888889999999999987654331100 0 00111111 345788888999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc-eeEEEeC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA-IMGLALD 231 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~-v~~~~~~ 231 (387)
.. +++.+..... ........ . +..++.++.+|.+..+|..+++.+.... .... ..+...
T Consensus 258 ~~------------tG~~~W~~~~--~~~~~p~~--~--~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i- 318 (377)
T TIGR03300 258 LR------------SGRVLWKRDA--SSYQGPAV--D--DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV- 318 (377)
T ss_pred CC------------CCcEEEeecc--CCccCceE--e--CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-
Confidence 83 3333332221 11111221 1 3677788899999999999998877663 2221 222222
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEEE
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
.+..+++++.+|.++++|..+++. +.... .+...+. +..+. + +.|+.++.||.|+.|
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~--------~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSF--------VARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCE--------EEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 467899999999999999887432 22221 2222222 22232 3 357788899998765
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=4.4e-10 Score=94.44 Aligned_cols=216 Identities=14% Similarity=0.146 Sum_probs=139.2
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEe-c--cCC---CCC--ceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAH-F--SGS---RSP--RRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~~~---~~~--v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
+.||+.++... .|.|++||..+...... + .-. ..+ +.-..|..+.. ..+.+++.. .-|...+.+...+-
T Consensus 275 nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-SRGkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-SRGKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE-ecCcEEEECCCCCe
Confidence 56888877754 48899999876653221 1 101 000 11111111000 011111111 34566666654443
Q ss_pred cccccCCCCCeeeEEeccCCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 76 PLHNIPVPEPVAPLATTADGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
...+.++..|.-..+..+++-++.|..|| .+-+||.++++.. .+...-+.|.++..+|+|++++++.....|.+.|+
T Consensus 353 -~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 353 -SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred -eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 33445666788888888888899999999 8999999877754 45556788999999999999999999999999999
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----cEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----TCKFWRLLNGTHLSTVTFPCAIMGLAL 230 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~ 230 (387)
.++.....-+...+-|+...|+|++ ++++-+--+| .|+++|+..++....-.....=.+-+|
T Consensus 431 ------------dngnv~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 431 ------------DNGNVRLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred ------------cCCCeeEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 3444444444556789999999986 8888876665 689999988775444333333334455
Q ss_pred CCCCCeEE
Q 035621 231 DPTETDFF 238 (387)
Q Consensus 231 ~~~~~~l~ 238 (387)
.|++++|.
T Consensus 497 D~d~ryLY 504 (668)
T COG4946 497 DPDGRYLY 504 (668)
T ss_pred CCCCcEEE
Confidence 55555544
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=122.21 Aligned_cols=196 Identities=15% Similarity=0.241 Sum_probs=158.5
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
-..|.++.-+|...+-++|+.||.+++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~------- 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA------- 2280 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc-------
Confidence 3678888889988899999999999999998888887765 23478999999999999999999999999987
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCc---EEEEEecCCceeEEEeCCCCC
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGT---HLSTVTFPCAIMGLALDPTET 235 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~ 235 (387)
..++....+.|........|-- ..+++++. ++.+.+||..-.. .+. .-|...++++++-|...
T Consensus 2281 ------~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2281 ------SPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ------CCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce
Confidence 4667788888998888888764 45666543 6889999975432 222 34889999999999999
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
.+++|+.+|.|++||++..... |.-.. +. ...+|++|+..|.++||++..-.++..+...+
T Consensus 2350 llisggr~G~v~l~D~rqrql~--------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLR--------------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHH--------------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 9999999999999999862211 22111 33 56799999999999999999998888887543
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=2.5e-12 Score=113.11 Aligned_cols=288 Identities=17% Similarity=0.156 Sum_probs=192.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~ 76 (387)
+..+|.|+-+|.++.-| +.+-|+... .+.+-+ .|..+ |-...|++...-. .+++ ......-.+|++... +.
T Consensus 30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~-~wiV-sts~qkaiiwnlA~ss~~a 105 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKP-YWIV-STSNQKAIIWNLAKSSSNA 105 (1081)
T ss_pred eeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCc-eeEE-ecCcchhhhhhhhcCCccc
Confidence 45688899899988876 556676543 333333 24443 6677787632211 1122 334445567887433 22
Q ss_pred cc--ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 77 LH--NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 77 ~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
+. ...|...++.+.|.|+. ..+++++.|-.+..||+++. .++..+..-...-..++|+.....+.+.+..+.|.+|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 32 23366789999999954 57899999999999999876 3455555455566789998855556666777889999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeEEEe
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLAL 230 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~ 230 (387)
|++. ...++..+++|...|+.+.|.... ...+.+++.|++|++||..... ..+.+....++..-.+
T Consensus 186 d~r~-----------gs~pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 186 DLRK-----------GSTPLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred eccC-----------CCcceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 9964 566788888999999999886553 3578899999999999987543 3444556778888888
Q ss_pred CCCCCeEEEE--ccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCC----------CEEEEEeCCCcE
Q 035621 231 DPTETDFFAA--GSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEG----------KNLVSAAEDGSV 297 (387)
Q Consensus 231 ~~~~~~l~~~--~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i 297 (387)
-|-|.-.+.- -.+..+.+++-+..... ........+..+.+|...|....|-..+ -.|+|-+.|..+
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 8866543332 12224444444433222 2223445556667999998887775322 279999999999
Q ss_pred EEEECCCc
Q 035621 298 YIWEIEKR 305 (387)
Q Consensus 298 ~iwd~~~~ 305 (387)
++|-+.+.
T Consensus 334 rlWpI~~~ 341 (1081)
T KOG0309|consen 334 RLWPIDSQ 341 (1081)
T ss_pred EeeeccHH
Confidence 99998753
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.37 E-value=3.2e-10 Score=88.30 Aligned_cols=224 Identities=8% Similarity=0.013 Sum_probs=149.2
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621 9 EVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV 86 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v 86 (387)
.+||.|+..|...+|...+.+... ....|...| ............+..++.|.++++.+++-+........+ -.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v---~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDV---TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccch---hhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccce
Confidence 578999999999999998665432 223333322 222211112223344778889998888654333322222 248
Q ss_pred eeEEeccCCCEEEEecCCCcEEEEeCCCC-cee-E-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 87 APLATTADGSYLFTGGLSGNVYAISVPKG-DIL-R-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
..++++++++++++.+....|..|.+... +.+ . ........=.+..|+.....++++..||++.|||++....+
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp--- 238 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP--- 238 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc---
Confidence 89999999999999999999999988643 222 2 12223344567889998899999999999999999764322
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---------CceeEEEeCCCC
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---------CAIMGLALDPTE 234 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~ 234 (387)
......+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|++++...+.+..+ ..+....|+.++
T Consensus 239 ----m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 239 ----MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred ----hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 1122233345899999999998765567777767789999999998766555421 125566666666
Q ss_pred CeEEEEcc
Q 035621 235 TDFFAAGS 242 (387)
Q Consensus 235 ~~l~~~~~ 242 (387)
..+.+.+.
T Consensus 315 ~s~~v~~e 322 (344)
T KOG4532|consen 315 ESNDVKNE 322 (344)
T ss_pred cccccccc
Confidence 55555544
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.9e-10 Score=101.02 Aligned_cols=301 Identities=11% Similarity=0.038 Sum_probs=194.9
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCee
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVA 87 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~ 87 (387)
-+||++...|.|.+||...+..+..++.|..++..++|-+.....-..++.-.....+.+|+..+|+....+.- ++...
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 46788888999999999999999999999999999999874433323334456778999999999999887774 45667
Q ss_pred eEEecc-CCCEEEEecCCCcEEEEeCCC-------CceeEEccCCCC----------------C---------eEEEEEc
Q 035621 88 PLATTA-DGSYLFTGGLSGNVYAISVPK-------GDILRSFSAHDK----------------P---------VSCLKIS 134 (387)
Q Consensus 88 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~----------------~---------v~~~~~~ 134 (387)
|+.+.| |.+.+..-+..|.+.+-+.-. ++..+.-..|.. . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 799988 566666666677666665411 122222222211 0 1135678
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
|.-+.++-....+.+.++|+ +-..++....-..+.+.-+.+.|++....|++...||.+.+|--+.-.
T Consensus 240 p~~rn~lfi~~prellv~dl------------e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDL------------EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred hhhhceEEEEeccceEEEcc------------hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 86555555566788999999 455566666666777778888999888899999999999999755411
Q ss_pred ----------------EEEEEe--cCCceeEEEeCCC-CCeEEEEccCCcEEEEeccccccccccc-------------c
Q 035621 215 ----------------HLSTVT--FPCAIMGLALDPT-ETDFFAAGSDGLIYKGLLKYQSRQQMHK-------------G 262 (387)
Q Consensus 215 ----------------~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~ 262 (387)
....+. ....+......|. ...++.--.+|...+|.+.++....... .
T Consensus 308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNL 387 (1062)
T ss_pred ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccC
Confidence 111111 0111222233343 3444444567778888877532211100 0
Q ss_pred c---------eeEeecccccccEEEEEEec-----------CC-------CEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 263 Q---------ELVTLANRHDGVVVSVMMMN-----------EG-------KNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 263 ~---------~~~~~~~~~~~~v~~~~~s~-----------~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
. .......+|....++....| .+ .++|.|...|+|.++|+.++..-+.+..|.
T Consensus 388 ~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 388 STKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred ceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc
Confidence 0 00011234555555444333 22 267889999999999999999988888774
Q ss_pred CCCceeE
Q 035621 316 AGSISEM 322 (387)
Q Consensus 316 ~~~v~~~ 322 (387)
+.|.++
T Consensus 468 -~~Vkgl 473 (1062)
T KOG1912|consen 468 -SLVKGL 473 (1062)
T ss_pred -cceeee
Confidence 367666
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.35 E-value=3.5e-09 Score=93.74 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=167.0
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC-Ccee----EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRS-PRRG----LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~----~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.+..+++++.+|.+.-+|.++|+.+........ .... ..++....+....++.++.++.+..+|.++|+.+...+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356777778889999999999998876543221 0000 00111111122233446788999999999999988887
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEE-EEEcC--CCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSC-LKISP--DGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
....+.+--.- .+..++++..++.+..+|.++|+.+.........+.. ..-+| .+..++.++.+|.+..+|..+.
T Consensus 148 ~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G- 225 (394)
T PRK11138 148 VAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG- 225 (394)
T ss_pred CCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC-
Confidence 65544321111 2446777888999999999999988776532111100 00112 2335777788888888887432
Q ss_pred ccCCCCCCCCccceEeeeccC-------CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHN-------DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD 231 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 231 (387)
..+-...... .....+..+|--.+..++.++.+|.+..+|..+++.+........ ..+ .
T Consensus 226 -----------~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~ 291 (394)
T PRK11138 226 -----------QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--A 291 (394)
T ss_pred -----------hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--E
Confidence 1111110000 000001111111135677777899999999999998776653321 111 1
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
..+..+++++.+|.++.+|..++........ . .+ ....+... .+.+|+.++.||.|...|..+|+.+.+.
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~-----~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--L-----LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccc--c-----CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 2467888888999999999987543221100 0 00 11111122 2457788899999999999999999887
Q ss_pred ec
Q 035621 312 KN 313 (387)
Q Consensus 312 ~~ 313 (387)
+-
T Consensus 362 ~~ 363 (394)
T PRK11138 362 KV 363 (394)
T ss_pred Ec
Confidence 64
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=8.1e-10 Score=87.17 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=153.7
Q ss_pred CCCeEEEEEccCCCccc--ccC--CCCCeeeEEecc---CCC-EEEEecCCCcEEEEeCCCCceeEEccCCC------CC
Q 035621 62 GSGSVHLYNLWSSTPLH--NIP--VPEPVAPLATTA---DGS-YLFTGGLSGNVYAISVPKGDILRSFSAHD------KP 127 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~--~~~--~~~~v~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~ 127 (387)
..|.+.+|++.+.+... .++ ....+..+.|.. +|. .++-+...|.|.+|.....+....+++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 56789999998776554 222 234566666653 444 45666778999999876554444443221 12
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF 207 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i 207 (387)
-.++.|++.+..++++..+|.+.+-+... ..-..++.++.|.-+.....|+... .+++++|+.|+.+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~----------~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~ 192 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE----------MVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSC 192 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce----------eeeeecccccccceeeeeeecccCC-CceEEecCCCceEEE
Confidence 35778899899999999999998555421 1223445788999999999997764 589999999999999
Q ss_pred EeCCC-CcEEEE--EecCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 208 WRLLN-GTHLST--VTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 208 wd~~~-~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
||++. ++.+.. ..|...|.++.-+| .+.++++|+.|-.|++||.++.. +++... .-.+.|+.+.++|
T Consensus 193 ~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~--~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 193 WDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKA--KVGGGVWRIKHHP 263 (339)
T ss_pred EEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccC--ccccceEEEEecc
Confidence 99993 333333 22778899988886 56899999999999999999632 222211 3458899999998
Q ss_pred CCC--EEEEEeCCCcEEEEECCCcc
Q 035621 284 EGK--NLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 284 ~~~--~l~s~~~dg~i~iwd~~~~~ 306 (387)
.-. .|+++ .-.-.+|-+.+.+.
T Consensus 264 ~~~~~lL~~C-Mh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 264 EIFHRLLAAC-MHNGAKILDSSDKV 287 (339)
T ss_pred hhhhHHHHHH-HhcCceEEEecccc
Confidence 533 34444 33346777766543
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.33 E-value=8.2e-10 Score=86.06 Aligned_cols=248 Identities=14% Similarity=0.036 Sum_probs=155.9
Q ss_pred eeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce
Q 035621 42 RGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 42 ~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
+.+.|.|...+ -...++.|+..|...+|...+.+....+- +...|.-..=.. ....+..++.|.++++.+++-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34556553222 22345568899999999987664332221 222221111111 122466677888888888765433
Q ss_pred eEEccCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE-eeeccCCCeEEEEEeeCCCCc
Q 035621 118 LRSFSAHDK--PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ-KFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 118 ~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 194 (387)
.... |.. .+.+++++++++++++.+....|-.|.+.+. ...... ......+.-.+..|+.. ..
T Consensus 151 ~~~~--h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~----------sey~~~~~~a~t~D~gF~~S~s~~--~~ 216 (344)
T KOG4532|consen 151 KFAV--HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDE----------SEYIENIYEAPTSDHGFYNSFSEN--DL 216 (344)
T ss_pred ccee--eccccceeeeEEcCCCceEEEecCCCcceEEEeCCc----------cceeeeeEecccCCCceeeeeccC--cc
Confidence 2222 332 3789999999999999999999999988431 112222 22233344456666655 48
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEE-EEe-----cCCceeEEEeCCCC--CeEEEEccCCcEEEEeccccccccccccceeE
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLS-TVT-----FPCAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV 266 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~-~~~-----~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 266 (387)
.+|++..||++.|||++...... ... |.+.+..+.|++.| .+|+..-.-+.+.+.|+++....+.....+-.
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 99999999999999999754332 221 66889999999876 45666667889999999987655433222221
Q ss_pred eeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 267 TLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 267 ~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
. ..|. ..|..-.|+.++.-+.+..++ .+.=|++.+..
T Consensus 297 -~-~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 297 -E-RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred -c-ccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 1 2343 348888898888777766655 45666665543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=1e-08 Score=100.36 Aligned_cols=243 Identities=12% Similarity=0.056 Sum_probs=150.2
Q ss_pred CCCCCeEEEEEccCCCcccccCC---------------CCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccC
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIPV---------------PEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 123 (387)
-+..+.|++||.. +..+..+.. -.....+++.++++.|+++. .++.|+.+|+.++. +.++.+
T Consensus 586 Ds~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag 663 (1057)
T PLN02919 586 DSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAG 663 (1057)
T ss_pred ECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEec
Confidence 4677889999975 333322221 12357899999888766654 45689999987654 333311
Q ss_pred C-----------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCC-CCC---CCCccceEeeeccCCC
Q 035621 124 H-----------------DKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHT-DDK---NPDDLMLQKFVAHNDS 181 (387)
Q Consensus 124 ~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 181 (387)
- -.....++++| ++.++++.+.++.|++||......... ... ...... .....-..
T Consensus 664 ~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~--~~~~~~~~ 741 (1057)
T PLN02919 664 NGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS--GTSTSFAQ 741 (1057)
T ss_pred cCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc--cccccccC
Confidence 0 12346899999 566667777888999999843211000 000 000000 00011123
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-----------ec-----------CCceeEEEeCCCCCeEEE
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-----------TF-----------PCAIMGLALDPTETDFFA 239 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~~-----------~~~v~~~~~~~~~~~l~~ 239 (387)
...++++|++ +.++++-+.++.|++||+.++...... .. -.....++++++|+.+++
T Consensus 742 P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDL-KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 4578888875 236667777899999999876532111 00 013468999999998888
Q ss_pred EccCCcEEEEecccccccccccccee----EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQEL----VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
-..++.|++||..+............ .....+.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 88899999999876432211100000 000112234678999999999999988999999999999875
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=2.2e-08 Score=96.30 Aligned_cols=289 Identities=14% Similarity=0.138 Sum_probs=172.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee------------------------EeccC---------------------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL------------------------AHFSG--------------------- 36 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~--------------------- 36 (387)
++||||+.+|+..+.++++.+-+. +.+++ ..|+|
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~ 204 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEG 204 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccC
Confidence 579999999999998888887642 11111 11111
Q ss_pred ---CCCCceeEEEcCccceeeeccc-cCC-CCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecC---CCcE
Q 035621 37 ---SRSPRRGLTFAGKPFIAASHIS-PTT-GSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGL---SGNV 107 (387)
Q Consensus 37 ---~~~~v~~~~~~~~~~~~~~~~~-~~~-~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---dg~i 107 (387)
+...-..+.|-+|+.+.+...+ ... .-..++||+-+ |.....-+ ..+--.+++|.|.|++||+... ...|
T Consensus 205 ~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 205 KLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred ccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 1122345778887766554322 122 24789999864 54333332 2233457899999999998764 3467
Q ss_pred EEEeCCCCceeEE----ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCe
Q 035621 108 YAISVPKGDILRS----FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSV 182 (387)
Q Consensus 108 ~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 182 (387)
.+|.- +|-.-.. +......|..+.|++|+..|+....|. |.+|-..+. .....+.+.. ....+
T Consensus 284 vFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY----------HWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 284 VFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY----------HWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC----------EEEEEEEEEccCCCCC
Confidence 77773 4432222 223456899999999999999987665 999987432 1112222221 12234
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCC----CC----------------c----------------EEEEEecCCcee
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLL----NG----------------T----------------HLSTVTFPCAIM 226 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~----------------~----------------~~~~~~~~~~v~ 226 (387)
..+.|+|.. ...|...+.+|.+..+++. .+ . ....+..+.+|.
T Consensus 352 ~~~~Wdpe~-p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~ 430 (928)
T PF04762_consen 352 NFVKWDPEK-PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN 430 (928)
T ss_pred CceEECCCC-CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence 447777764 3445555554555444321 11 0 123344677899
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe---------ecccccccEEEEEEecCCCEEEEEeCC---
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT---------LANRHDGVVVSVMMMNEGKNLVSAAED--- 294 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~s~~~d--- 294 (387)
+++|++++..+++-..||.+.+|.................. ........+..++|..+..+++....+
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQ 510 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCccc
Confidence 99999999889999999999999976543321100000000 011124467888998877766665554
Q ss_pred CcEEEEECCCc
Q 035621 295 GSVYIWEIEKR 305 (387)
Q Consensus 295 g~i~iwd~~~~ 305 (387)
..+.++++...
T Consensus 511 ~~i~~~~~~~~ 521 (928)
T PF04762_consen 511 SKIVLVDIDDS 521 (928)
T ss_pred ceEEEEEeccC
Confidence 67888887543
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=6.5e-11 Score=97.20 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEE
Q 035621 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCK 206 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~ 206 (387)
...+..+|.+++++++..+....+++.+.... ..+....... ...-+++.+..+... ...-..+....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--------~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--------GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC--------cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeee
Confidence 44556778888999998888887887743211 1122222211 122233444333211 1222333445666
Q ss_pred EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
+|....+.+...+.|-+.++.++++||+++|+++..|..|++-.... ...+..+.-+|..-|..++.-++ .
T Consensus 136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--------~f~IesfclGH~eFVS~isl~~~-~ 206 (390)
T KOG3914|consen 136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--------TFVIESFCLGHKEFVSTISLTDN-Y 206 (390)
T ss_pred eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--------ccchhhhccccHhheeeeeeccC-c
Confidence 77666677777777889999999999999999999999999977655 33444555689999999999765 5
Q ss_pred EEEEEeCCCcEEEEECCCccEEEEee
Q 035621 287 NLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.|++||.|++|++||+.+|+++..+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccc
Confidence 68999999999999999999987765
No 282
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.28 E-value=6.2e-09 Score=85.66 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=141.1
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEE--eccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLA--TTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL 140 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 140 (387)
+|.|..||..+++.+............. ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 6889999999999888876533333333 334667788888999999999999998877764 22222111 2245567
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccC---CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHN---DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
++++.++.++.+|. .++..+... .... ........... +..++.+..++.|..+|+++|+.+
T Consensus 80 ~v~~~~~~l~~~d~------------~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 80 YVGTSDGSLYALDA------------KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEEETTSEEEEEET------------TTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccceeeeEeccc------------CCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEE
Confidence 77778889999997 455555552 2221 11112222222 367888888999999999999998
Q ss_pred EEEecCCc-----------e-eEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 217 STVTFPCA-----------I-MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 217 ~~~~~~~~-----------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
.......+ + ..+.+. ++ .+++++.++.+..+|+.++.. .-.. . ...+.. ....+
T Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~--------~w~~--~-~~~~~~-~~~~~ 211 (238)
T PF13360_consen 146 WKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEK--------LWSK--P-ISGIYS-LPSVD 211 (238)
T ss_dssp EEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEE--------EEEE--C-SS-ECE-CEECC
T ss_pred EEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCE--------EEEe--c-CCCccC-Cceee
Confidence 88874321 1 222333 34 788888888644448887432 1111 1 111222 13467
Q ss_pred CCEEEEEeCCCcEEEEECCCccEEEE
Q 035621 285 GKNLVSAAEDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (387)
+..|+.++.++.|..||+++|+.+.+
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 78888888999999999999998764
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=7.1e-09 Score=99.63 Aligned_cols=284 Identities=15% Similarity=0.165 Sum_probs=174.9
Q ss_pred cccCCCcEEEeeCCCCcEEEE----eCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc------
Q 035621 3 HHLPCNEVILTSSPEGPITAY----NPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW------ 72 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~------ 72 (387)
+|-++...++.+..+|.|.+. +..+.+. ...-.-...|.+++|+|+..+.+- .+.++++.+-+-.
T Consensus 82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~----vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 82 QYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLAL----VTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred EeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEE----EeCCCEEEEEeccceEEEE
Confidence 455677778888889999999 5543332 112223456999999997665543 5556666654321
Q ss_pred ---------C--------CCcccccC-------------------------CCCCeeeEEeccCCCEEEEecC---C---
Q 035621 73 ---------S--------STPLHNIP-------------------------VPEPVAPLATTADGSYLFTGGL---S--- 104 (387)
Q Consensus 73 ---------~--------~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~~~~---d--- 104 (387)
. |+...+|. ....-..++|-.||.++|+.+. .
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 0 00001110 1123456889999999998864 2
Q ss_pred CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
..+++|+- .|++..+-+.-.+--.+++|.|.|+++++... ...|.+|.-..+ ..+.....+......
T Consensus 237 R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL---------rhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 237 RVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL---------RHGEFTLRFDPEEEK 306 (928)
T ss_pred eEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc---------EeeeEecCCCCCCce
Confidence 47999995 47665554444444467899999999998865 234566643111 111111122234567
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe--cCCceeEEEeCCCC-CeEEEEccCCcEEEEecccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT--FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
|..+.|++++ ..|+..-.|. |.+|-..+-. ..+.+. ....+..+.|+|.. ..|.+.+.+|.+..+++.....
T Consensus 307 v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 307 VIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred eeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 8999999886 8888876555 9999887754 223333 33446669999965 4577777767776655532111
Q ss_pred cc------------cccc--------------ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 257 QQ------------MHKG--------------QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 257 ~~------------~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.. ...+ ++.....-.-..+|.+++|++++..+++-..||.|.+|....
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 00 0001 111111113456799999999998899999999999998544
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=3.7e-11 Score=96.68 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=123.8
Q ss_pred ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-----ceeEEccCCCCCeEEEE
Q 035621 58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-----DILRSFSAHDKPVSCLK 132 (387)
Q Consensus 58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~ 132 (387)
++.+.+..+-+-|++++-. +.+...+.|.++.|...+++++.|..+|.|..+|++.+ .+...+ -|...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhh
Confidence 4466777888889887743 34446788999999999999999999999999999765 334444 4889999998
Q ss_pred EcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 133 ISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 133 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
.-. ++++|++.+.+|+|++||++.. ..+.-+.++.+|...-..+-++-+.....+++++.|...+||.++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~---------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRAT---------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhh---------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 776 7889999999999999999543 223347888888776666655555556788899999999999999
Q ss_pred CCcEEEEEecCCc
Q 035621 212 NGTHLSTVTFPCA 224 (387)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (387)
.+..+.+++.+..
T Consensus 377 ~ghLl~tipf~~s 389 (425)
T KOG2695|consen 377 SGHLLCTIPFPYS 389 (425)
T ss_pred cCceeeccCCCCc
Confidence 9999999986544
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.26 E-value=9.7e-08 Score=78.83 Aligned_cols=215 Identities=12% Similarity=0.133 Sum_probs=138.0
Q ss_pred eEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 88 PLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 88 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+.+|.+ ++.++++--..+.|+.|+..+++... +.... ...+++. +++ .++.+...+ +.++|...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~--------- 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDT--------- 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTT---------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCC---------
Confidence 567887 66666666678899999988776533 32222 7778888 565 455555544 45558722
Q ss_pred CCCccceEeee--c-cCCCeEEEEEeeCCCCceEEEEeCC--------CcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 166 NPDDLMLQKFV--A-HNDSVTAITCCIGSFNSIIISCSMD--------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 166 ~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
.....+.... . .....+.+++.+++ ++.++.... |.|..++.. ++.......-...+.++|+|++
T Consensus 70 -g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 70 -GKVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp -TEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS
T ss_pred -CcEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc
Confidence 1112222221 1 33567788888874 777766543 457777776 5554444455678899999999
Q ss_pred CeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 235 TDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 235 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
+.|++ -+..+.|+.+++........ ............+..-.+++..+|++.++....+.|.+++.+ |+++..+..
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred hheeecccccceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 98765 46688899999875332110 011111111222458899999999988888888999999987 999998887
Q ss_pred ccCCCceeEEE
Q 035621 314 ELAGSISEMVI 324 (387)
Q Consensus 314 ~~~~~v~~~~~ 324 (387)
... .+++++|
T Consensus 223 p~~-~~t~~~f 232 (246)
T PF08450_consen 223 PVP-RPTNCAF 232 (246)
T ss_dssp SSS-SEEEEEE
T ss_pred CCC-CEEEEEE
Confidence 634 8999999
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=1.9e-08 Score=98.48 Aligned_cols=244 Identities=16% Similarity=0.127 Sum_probs=150.2
Q ss_pred ccccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccC--C------------CCCceeEEEcCccc--eeeeccccCCCCC
Q 035621 2 LHHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSG--S------------RSPRRGLTFAGKPF--IAASHISPTTGSG 64 (387)
Q Consensus 2 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~--~~~~~~~~~~~d~ 64 (387)
++++++ ++++++-+.++.|.+||.. +..+..+.+ . -.....+++.++.. +.+ -...+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa-----Dt~n~ 646 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA-----DTENH 646 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE-----eCCCc
Confidence 356654 6677777788899999975 554444422 1 12357788876432 222 34567
Q ss_pred eEEEEEccCCCcccccC------------------CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccC--
Q 035621 65 SVHLYNLWSSTPLHNIP------------------VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSA-- 123 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 123 (387)
.|+++|..++... .+. .-.....++++| ++..+++...++.|++||..++... .+.+
T Consensus 647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G 724 (1057)
T PLN02919 647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG 724 (1057)
T ss_pred eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence 8999988665321 110 012346789999 5556666677889999998776542 1111
Q ss_pred -------------CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCCCCC-CccceEeee--------ccCC
Q 035621 124 -------------HDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDDKNP-DDLMLQKFV--------AHND 180 (387)
Q Consensus 124 -------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~ 180 (387)
.-.....|+++|+++.| ++-+.++.|++||+............. .......+. ..-.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 11245679999998844 455567899999984311000000000 000000000 0111
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEccCCcE
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGSDGLI 246 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~dg~i 246 (387)
....+++.+++ +++++-+.++.|++||..++......... ..+..++++++|+.+++-+.++.|
T Consensus 805 ~P~Gvavd~dG--~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDG--QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCC--cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 23467787764 78888888999999999887655433211 257789999999988888889999
Q ss_pred EEEeccccc
Q 035621 247 YKGLLKYQS 255 (387)
Q Consensus 247 ~i~d~~~~~ 255 (387)
++||+.+..
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999998754
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=2.2e-08 Score=79.31 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=136.0
Q ss_pred EEeccCCCEEEEecCCCcEEEEeCCCC--ceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 89 LATTADGSYLFTGGLSGNVYAISVPKG--DILRSF---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 89 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
++.+.+|+.||+- .|..|.+-..++. ..+.+. +.....-+.++|+||+.+|+.+...|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~------ 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS------ 75 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc------
Confidence 5677888888776 5666766654432 222222 222334578999999999999999999999999321
Q ss_pred CCCCCccceEeee-------ccCCCeEEEEEeeCCC----CceEEEEeCCCcEEEEeCCC-----CcEEEEEe----cCC
Q 035621 164 DKNPDDLMLQKFV-------AHNDSVTAITCCIGSF----NSIIISCSMDCTCKFWRLLN-----GTHLSTVT----FPC 223 (387)
Q Consensus 164 ~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~----~~~ 223 (387)
.+..+. .-...|..+.|.+... ...|+.-..+|.++-|-+.. .+....|. .+.
T Consensus 76 -------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 76 -------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred -------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 111111 1234566666654421 12466666788887776532 23444444 367
Q ss_pred ceeEEEeCCCCCeEEEEccC----C-------cEEEEeccccccccc----c--------ccceeEee--------cccc
Q 035621 224 AIMGLALDPTETDFFAAGSD----G-------LIYKGLLKYQSRQQM----H--------KGQELVTL--------ANRH 272 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~d----g-------~i~i~d~~~~~~~~~----~--------~~~~~~~~--------~~~~ 272 (387)
.|.++.++|..+.|++|+.. + -+..|.+-.+..... . +...+.+. ....
T Consensus 149 Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 149 GINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred ceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 89999999999988887651 1 255666544322110 0 00000010 1123
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
...|..|..||||..||+...+|.|.+|++.+-++.+.++.+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 567999999999999999999999999999999888877654
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.7e-10 Score=98.79 Aligned_cols=267 Identities=10% Similarity=0.179 Sum_probs=174.4
Q ss_pred CCcEEEeeCCCCcEEEEeCC-------CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 7 CNEVILTSSPEGPITAYNPS-------SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+.+-+++++.|.+|++|.++ +..+..+++.|..+|.++.|..+.... ++.||-+.+||.--++++..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i------~ScD~giHlWDPFigr~Laq 819 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI------ASCDGGIHLWDPFIGRLLAQ 819 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee------eeccCcceeecccccchhHh
Confidence 45678999999999999985 334677889999999999998754444 46799999999988887765
Q ss_pred cC---CCCCeeeEEecc--CCCEEEEe-cCCCcEEEEeCCCCceeEEcc-----CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 80 IP---VPEPVAPLATTA--DGSYLFTG-GLSGNVYAISVPKGDILRSFS-----AHDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 80 ~~---~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
.. ..+.+..+..-+ +...+++| +...+|+++|.+..+-...++ +.+..+++++..+.|++++.+-.+|.
T Consensus 820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc 899 (1034)
T KOG4190|consen 820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC 899 (1034)
T ss_pred hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence 54 223344444444 33444444 677899999999887666554 33466899999999999999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE-EeCCCCcEEEEEecC-Ccee
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF-WRLLNGTHLSTVTFP-CAIM 226 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~-~~v~ 226 (387)
|.+.|. .+++.+..+..-.-....++. |. .+.++....|.++.+ |....+......+.+ .+..
T Consensus 900 i~~LDa------------R~G~vINswrpmecdllqlaa-ps--dq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 900 IAILDA------------RNGKVINSWRPMECDLLQLAA-PS--DQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred EEEEec------------CCCceeccCCcccchhhhhcC-ch--hHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 999999 445555555444333333332 33 367888888888988 877666544443321 1111
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
- ...-|..++++.....+.+|--.... .......++. .....+..++++.-|-+.-++.|.+.|.|.+
T Consensus 965 f--lqsvgpSLV~a~~Gn~lgVYad~a~~-ha~stitKiR--~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 F--LQSVGPSLVTAQNGNILGVYADSAEL-HAESTITKIR--PDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h--hhccCceeEEeccCcEEEEEecchhh-hhhhhhcccc--ccccCCccceeeeccccchhhccCCCCceee
Confidence 0 11235566666666666666322110 0000000000 1123566788888888888888888888875
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=2.9e-10 Score=93.44 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=110.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc----eeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA----ILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
...+|.+++||.+..+....+++..... ++..+.. -...+..+.......+... .+....+.+|+...+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk----agD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK----AGDVYSFDILSADSGR 143 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee----cCCceeeeeecccccC
Confidence 3578899999999988887777765332 2222221 2222333333332222222 5677788888887777
Q ss_pred cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 76 PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
+...+.|-..++.++++||+++++++..|..|++-.....-.+..+- +|+.-|..++.-++ ..|++++.|+++++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 77788888999999999999999999999999999887766666554 79999999999865 46999999999999999
Q ss_pred Cc
Q 035621 155 FQ 156 (387)
Q Consensus 155 ~~ 156 (387)
.+
T Consensus 223 ~s 224 (390)
T KOG3914|consen 223 TS 224 (390)
T ss_pred cc
Confidence 44
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.4e-09 Score=96.08 Aligned_cols=255 Identities=13% Similarity=0.103 Sum_probs=172.8
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc---------------cccC-CCCCeeeEEeccCCCEEEEecC
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL---------------HNIP-VPEPVAPLATTADGSYLFTGGL 103 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~---------------~~~~-~~~~v~~~~~~~~~~~l~~~~~ 103 (387)
...++.|+.+. .+++.|+.||.+++..+.+...- +++. |...|..+.|+.+.+.|-+...
T Consensus 16 kL~c~~WNke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 16 KLHCAEWNKES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred eEEEEEEcccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 47899999843 44555999999999988653211 1111 6678999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEc--cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 104 SGNVYAISVPKGDILRSF--SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
+|.|.+|-+-.++-...+ ...+..|.+++|+.+|..+.....||.|.+=.+. +..+..-.-....
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-------------GNRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-------------GNRIWGKELKGQL 158 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-------------cceecchhcchhe
Confidence 999999999877644333 2345678999999999999999999988765441 1111100001112
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEEEEe-----cCCceeEEEeC--------CCCCeEEEEc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLSTVT-----FPCAIMGLALD--------PTETDFFAAG 241 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~-----~~~~v~~~~~~--------~~~~~l~~~~ 241 (387)
...+.|+++. ..++.+-.+|.+.+||.... .+..... .+..+..+.|. |+...++++-
T Consensus 159 l~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 159 LAHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred ccceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 3367788875 67777778899999997532 1211111 23345666664 5778999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC---------CcEEEEECCCccEEEEee
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED---------GSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~ 312 (387)
.+|.+.+-.-.+. +.+.-+ .....+..+.|+++|.+|+.++.| +.|.+|. .-|+.+.+++
T Consensus 237 ~nGr~QiMR~eND--------~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk 305 (1189)
T KOG2041|consen 237 ANGRMQIMRSEND--------PEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK 305 (1189)
T ss_pred cCceehhhhhcCC--------CCCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe
Confidence 9999887654442 222222 234678899999999999998765 2566665 3477777777
Q ss_pred cccCCCceeEEEE
Q 035621 313 NELAGSISEMVIA 325 (387)
Q Consensus 313 ~~~~~~v~~~~~~ 325 (387)
.... .|+++.+-
T Consensus 306 vpg~-~It~lsWE 317 (1189)
T KOG2041|consen 306 VPGS-CITGLSWE 317 (1189)
T ss_pred cCCc-eeeeeEEc
Confidence 6533 67766554
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.2e-08 Score=87.42 Aligned_cols=215 Identities=11% Similarity=-0.013 Sum_probs=127.6
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE-EEEecC---CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY-LFTGGL---SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
...|.+=|.+... .+.+..........|+|||+. ++..+. +..|+++|+.+++...... ..+......|+|||+
T Consensus 168 ~~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 168 KSNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred cceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3456665654333 332333347778999999985 554433 3579999998887654433 455566788999998
Q ss_pred EEEEE-eCC--CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCC
Q 035621 139 LLISG-GDD--GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLN 212 (387)
Q Consensus 139 ~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~ 212 (387)
.++.. +.+ ..|.++|+. .. ....+..+........|+|++ +.|+..+ ..+ .|.++|+.+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~------------~g-~~~~LT~~~~~d~~p~~SPDG--~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTN------------TK-TLTQITNYPGIDVNGNFVEDD--KRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEEEEEccCCCcEEEEEECC------------CC-cEEEcccCCCccCccEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence 66543 334 457777762 22 233333333333455788886 5444444 333 588888887
Q ss_pred CcEEEEEecCCceeEEEeCCCCCeEEEEccC---------CcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSD---------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
++..+....... ...|+|+|+.|+..... ..|++.|+..+... .+... .......|+|
T Consensus 311 g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~---------~LT~~--~~~~~p~~SP 377 (419)
T PRK04043 311 GSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR---------RLTAN--GVNQFPRFSS 377 (419)
T ss_pred CCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE---------ECCCC--CCcCCeEECC
Confidence 765433322222 34899999998877653 25777777664321 11111 1223578999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCccE
Q 035621 284 EGKNLVSAAED---GSVYIWEIEKRQV 307 (387)
Q Consensus 284 ~~~~l~s~~~d---g~i~iwd~~~~~~ 307 (387)
||+.|+....+ ..+.+.++..+..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCCCee
Confidence 99988765433 2466777765433
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.4e-10 Score=92.80 Aligned_cols=291 Identities=14% Similarity=0.113 Sum_probs=186.8
Q ss_pred CcEEEeeCCCCcEEEEeCCC--C-ceeEeccCCCCCceeEEEcCccceeeeccccCCC-CCeEEEEEccCCCcccccCCC
Q 035621 8 NEVILTSSPEGPITAYNPSS--G-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP 83 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~ 83 (387)
.+++.+++.||.++.|.... + +.+..+..|...|.+++.+-++.+..+ .+. |..++++|+++-..+..++..
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~S----v~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRS----VEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEee----ccCcccceeEEEeeccchhhhcccc
Confidence 46889999999999998643 1 345556678888888888887666554 555 999999999988777666544
Q ss_pred CCeeeEEecc-CC---CEEEEe-cCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 84 EPVAPLATTA-DG---SYLFTG-GLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 84 ~~v~~~~~~~-~~---~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.....+.|.. .| ..++++ -.+|.+.++|-.... ....-+-|..+|.++.+++-+..+++....|.|.-|....
T Consensus 96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 4333333332 22 134443 367899999975543 3344456999999999999999999999999999998853
Q ss_pred ccccCCC---CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621 157 LVDEHTD---DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 157 ~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 233 (387)
....... ..-....-+..+........++.|+|++ ..+.+-+.|..|+++++++++.++.+..... ...+-|.
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~qistl~~DrkVR~F~~KtGklvqeiDE~~t--~~~~q~k 251 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--AQISTLNPDRKVRGFVFKTGKLVQEIDEVLT--DAQYQPK 251 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEcccc--CcccccCcccEEEEEEeccchhhhhhhccch--hhhhccc
Confidence 1111000 0011222333344556677899999986 8888889999999999999998877752110 0001111
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
. .+.+-.+.-+.+... ..+ +.+.....-+.+.|...|++|+-|+.=| |++.++.++++++.+-.
T Consensus 252 s----------~y~l~~VelgRRmav--ere---lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 252 S----------PYGLMHVELGRRMAV--ERE---LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred c----------ccccceeehhhhhhH--Hhh---HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 1 111111111110000 000 1111223446788999999999998776 99999999999988865
Q ss_pred ccCCCceeE
Q 035621 314 ELAGSISEM 322 (387)
Q Consensus 314 ~~~~~v~~~ 322 (387)
...-..+.+
T Consensus 316 ~e~ir~~~~ 324 (558)
T KOG0882|consen 316 DEAIRFTRL 324 (558)
T ss_pred chhhhhhhH
Confidence 443333333
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=9.5e-08 Score=80.77 Aligned_cols=199 Identities=11% Similarity=0.133 Sum_probs=139.2
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-cc-----CCC-----CCeEEEE-EcC-CCCEEEEEeCCCcEEEE
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FS-----AHD-----KPVSCLK-ISP-DGSLLISGGDDGVIATV 152 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~-----~~~-----~~v~~~~-~~~-~~~~l~~~~~dg~i~iw 152 (387)
-.+-..+.||+.++.. ..|.|.+||..+.+.... +. ... .+..-+. |++ +|.+++..+. |..-+.
T Consensus 269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 3344456788888764 568899999876653221 10 000 1111121 444 6788888776 555555
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFPCAIMGLALD 231 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 231 (387)
+.. .. . ....+|.+.|.-..+.-++ +-++.|..|| .+-|||..+++..+....-+.|.++..+
T Consensus 347 ~~~------------~~-~-~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs 410 (668)
T COG4946 347 RPW------------DG-Y-SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS 410 (668)
T ss_pred CCC------------CC-e-eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc
Confidence 441 11 1 1223566778877776664 5788888998 8999999988766655566889999999
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC----cEEEEECCCccE
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG----SVYIWEIEKRQV 307 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~ 307 (387)
|+|++++++.....+.++|+.++... ...+...+-|+.+.|+|+++++|-+--+| .|+++|+.+++.
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~---------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVR---------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCee---------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999999999999999999985432 22234567899999999999999876555 699999999887
Q ss_pred EEEe
Q 035621 308 VMVL 311 (387)
Q Consensus 308 ~~~~ 311 (387)
...-
T Consensus 482 y~vT 485 (668)
T COG4946 482 YDVT 485 (668)
T ss_pred EEec
Confidence 6544
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=3.7e-08 Score=87.26 Aligned_cols=258 Identities=13% Similarity=0.114 Sum_probs=153.1
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA 87 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~ 87 (387)
+..++.++.+|.++.+|.++|+.+.+.+.......+..... ..++.+..++.+..+|.++|+.+..+....+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC------CEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 45677788889999999999998877754322111111222 223335678999999999999887776432211
Q ss_pred eE--Eecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 035621 88 PL--ATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK-------PVSCLKISP--DGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 88 ~~--~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 154 (387)
.+ .-+| .+..++.++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 00 0112 234577778899999999999987655431110 011111223 3456777888999999988
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-C-CceeEEEeCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-P-CAIMGLALDP 232 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~~~ 232 (387)
. ++..+-... ......+.. . +..++.++.+|.+..+|..+++.+..... . ....+...
T Consensus 274 ~------------tG~~~W~~~--~~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-- 333 (394)
T PRK11138 274 R------------SGQIVWKRE--YGSVNDFAV--D--GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-- 333 (394)
T ss_pred C------------CCCEEEeec--CCCccCcEE--E--CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence 3 332222211 111111222 1 35777788899999999999987765432 1 11121122
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
.+..+++++.+|.++..|..+++.. ..... ....+. ...+ .+..|+.++.||.|+.++.
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~~~--------~~~~~-~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGRFV--------AQQKV-DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEE--------EEEEc-CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3567889999999999998874322 11111 111122 1122 2457888899999988764
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.16 E-value=1.9e-09 Score=83.69 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=113.2
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccC--CCCCceeEEEcC------ccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSG--SRSPRRGLTFAG------KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.|+++..++.+.....-++.+....+. ..++..+++.+. ......+.++++..||.+.+++.+. .....
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~~~ 125 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK---DLALM 125 (319)
T ss_pred eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH---HHhhh
Confidence 456666666666655544433322211 112233333321 1112334566788999999998765 22222
Q ss_pred CCCCe-----eeEEeccCCCEEEEecC-----CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 035621 82 VPEPV-----APLATTADGSYLFTGGL-----SGNVYAISVPKGDILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIA 150 (387)
Q Consensus 82 ~~~~v-----~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 150 (387)
+..++ .+.++...++.+.++.. -+..+.|+++..+....-+.....|++++-+|. .+.+++|+.||.+.
T Consensus 126 ~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~ 205 (319)
T KOG4714|consen 126 SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVG 205 (319)
T ss_pred hhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEE
Confidence 22221 22233334555554431 234556665433222111112344999999994 55788889999999
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
+||.++. ..+...+..|..+|+-+-|+|.. +..|+++++||.+.-||..+
T Consensus 206 l~d~rn~-----------~~p~S~l~ahk~~i~eV~FHpk~-p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 206 LWDARNV-----------AMPVSLLKAHKAEIWEVHFHPKN-PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEcccc-----------cchHHHHHHhhhhhhheeccCCC-chheeEecCCCcEEEEcCCC
Confidence 9999652 34566678999999999999985 78899999999999999765
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=2.9e-10 Score=100.51 Aligned_cols=221 Identities=15% Similarity=0.207 Sum_probs=156.2
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCC--CCeEEEEEcCCCC---EEEEEeCCCcEEEE
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHD--KPVSCLKISPDGS---LLISGGDDGVIATV 152 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~v~~~~~~~~~~---~l~~~~~dg~i~iw 152 (387)
.++..+++..+..+|.|+-++.++.-| +.+.|+... .+.+-+. |. -.|-...|+|... .+++.+ ...-.+|
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw 96 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW 96 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence 344567888999999999999998877 666676543 2222221 22 2466778887543 444444 4445689
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEe
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLAL 230 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~ 230 (387)
++... .....-..+.+|...|+.+.|.|.. ...+++++.|-.+..||+++.. ++..+. .......+.|
T Consensus 97 nlA~s---------s~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 97 NLAKS---------SSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW 166 (1081)
T ss_pred hhhcC---------CccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence 88432 2333445567899999999999875 6899999999999999999864 344443 4667788999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
+-....+.+.+....|.+||.+. +..+....++|...|+.+.|.. ....+.+.+.||+|++||.+......
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~--------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRK--------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred cccCcchhhhccCCceEEEeccC--------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 98888888888899999999998 4455555667889999998864 33467889999999999987654433
Q ss_pred EeecccCCCce
Q 035621 310 VLKNELAGSIS 320 (387)
Q Consensus 310 ~~~~~~~~~v~ 320 (387)
........+|.
T Consensus 239 ~~~vtt~~piw 249 (1081)
T KOG0309|consen 239 KRTVTTNFPIW 249 (1081)
T ss_pred ceeccccCcce
Confidence 33323333443
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-09 Score=86.88 Aligned_cols=229 Identities=15% Similarity=0.192 Sum_probs=147.1
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----eeEEccCCC------------CCeEEEEEcCCCC--EEEE
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----ILRSFSAHD------------KPVSCLKISPDGS--LLIS 142 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 142 (387)
..+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999999999999764432 223345553 3467788766443 6777
Q ss_pred EeCCCcEEEEeCCcccccC--------------CCC-----------CCCCcc-----ceEe-eeccCCCeEEEEEeeCC
Q 035621 143 GGDDGVIATVPIFQLVDEH--------------TDD-----------KNPDDL-----MLQK-FVAHNDSVTAITCCIGS 191 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~--------------~~~-----------~~~~~~-----~~~~-~~~~~~~i~~~~~~~~~ 191 (387)
.+.|.+|++|.+....-.. ..+ ...... +.+. -..|.-.|+++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999986431000 000 000000 1111 14577778888887663
Q ss_pred CCceEEEEeCCCcEEEEeCCCCcEEEEE---e-c-----CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccc-
Q 035621 192 FNSIIISCSMDCTCKFWRLLNGTHLSTV---T-F-----PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMH- 260 (387)
Q Consensus 192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~-~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~- 260 (387)
..++++ .|=.|.+|++.-...-..+ + + ...|++..|+|.. +.+.-.+..|.|++-|++........
T Consensus 185 --et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 --ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred --heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 566554 5778999998754322222 1 2 2358889999976 55666778999999999853322110
Q ss_pred ------ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-ccEEEEeecc
Q 035621 261 ------KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNE 314 (387)
Q Consensus 261 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 314 (387)
....-..++..-...|..+.|+++|+++++-+. -+|+|||+.. ..++.++..|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 011111222334467889999999999998765 4899999987 4567777544
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.13 E-value=2.1e-09 Score=97.44 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=143.5
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621 94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
++..++.|+....+..+|+++.+..+...-....|+-|+. +++.+++|...|+|.+-|. .....++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~------------~s~~~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP------------NSFETIH 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecC------------CcCceee
Confidence 4456778888888999999988877766544445666665 6789999999999999998 6778899
Q ss_pred eeeccCCCeEEEEEeeCCCCceEEEEeC---------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC-CeEEEEccC
Q 035621 174 KFVAHNDSVTAITCCIGSFNSIIISCSM---------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE-TDFFAAGSD 243 (387)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 243 (387)
++.+|.+.|..+... |++|++|+. |..|+|||++..+.+..+..+....-+.|+|.- ..+++++..
T Consensus 212 t~~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred eeeccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence 999999999888664 578999876 556899999999888888877666778888864 678888889
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
|...+.|...-.. ...-..........+..++++++++.++.|..+|.|.+|.
T Consensus 288 Gq~q~vd~~~lsN-----P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSN-----PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCC-----CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999988332111 1011111123345599999999999999999999999998
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.3e-07 Score=83.61 Aligned_cols=203 Identities=10% Similarity=-0.023 Sum_probs=123.2
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS 96 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (387)
..|.+-|.. |...+.+.... ......|+|++.. ....- ..+....|.++|+.+++.......++......|+|||+
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s-~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTS-YGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEE-ccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 467776654 43344343333 6778899997642 22111 12235689999998887766555666677788999998
Q ss_pred EEEEe-cC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCcc
Q 035621 97 YLFTG-GL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 97 ~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
.++.. +. +..|.++|+.+++. ..+..+........|+|||+.|+..+. .+ .|.+.|+. .+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~------------~g~ 312 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN------------SGS 312 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC------------CCC
Confidence 77654 32 35788889877764 344434433345689999987766653 34 46666662 111
Q ss_pred ceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---------CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
. ..+...... ...|+|++ +.++..+.. ..|.+.|+.++.. +.+..........|+|||+.++...
T Consensus 313 ~-~rlt~~g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 313 V-EQVVFHGKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred e-EeCccCCCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence 1 111111111 24788886 555554433 3688889887764 3444333344688999999887765
Q ss_pred c
Q 035621 242 S 242 (387)
Q Consensus 242 ~ 242 (387)
.
T Consensus 387 ~ 387 (419)
T PRK04043 387 Y 387 (419)
T ss_pred c
Confidence 4
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=2.2e-07 Score=76.66 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=139.9
Q ss_pred cccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEc-CccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 3 HHLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 3 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
.|.+ ++.++++--..+.|+.|+..+++... +.... ...+++. +++.+.. +. .+.+.++|..+++.....
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-----~~-~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-----AD-SGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-----EE-TTCEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-----EE-cCceEEEecCCCcEEEEe
Confidence 5777 78888888888999999998776543 22222 6677777 5444332 22 345566698887543332
Q ss_pred C------CCCCeeeEEeccCCCEEEEecCC--------CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeC
Q 035621 81 P------VPEPVAPLATTADGSYLFTGGLS--------GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGD 145 (387)
Q Consensus 81 ~------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~ 145 (387)
. .....+.+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 2 22468899999999977665433 557777776 55433332 345678999999998775 5566
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-Cc
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CA 224 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~ 224 (387)
.+.|..+++....... ........+....+....+++..+ +++.++....+.|.++|.. |+.+..+..+ ..
T Consensus 155 ~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~ 226 (246)
T PF08450_consen 155 NGRIWRFDLDADGGEL-----SNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-GKLLREIELPVPR 226 (246)
T ss_dssp TTEEEEEEEETTTCCE-----EEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred cceeEEEeccccccce-----eeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC
Confidence 7788888873210000 001111122222234667887665 5888887788999999987 9999888866 78
Q ss_pred eeEEEe-CCCCCeEEEEc
Q 035621 225 IMGLAL-DPTETDFFAAG 241 (387)
Q Consensus 225 v~~~~~-~~~~~~l~~~~ 241 (387)
+++++| -++.+.|++.+
T Consensus 227 ~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEESTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEe
Confidence 999999 46767666654
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=7.3e-09 Score=82.65 Aligned_cols=279 Identities=11% Similarity=0.139 Sum_probs=164.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-----ceeEeccCCCC------------CceeEEEcCccceeeeccccCCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-----AILAHFSGSRS------------PRRGLTFAGKPFIAASHISPTTGSG 64 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~d~ 64 (387)
+.|...|.+|++|...|.|.+|.-... +...++++|.. .|..+.|..+... +.+...+.|.
T Consensus 32 Vefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r--~hFLlstNdk 109 (460)
T COG5170 32 VEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR--NHFLLSTNDK 109 (460)
T ss_pred EEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc--ceEEEecCCc
Confidence 356778899999999999999986532 23345666653 3778888753321 2233367899
Q ss_pred eEEEEEccCCCccccc--CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC------CceeEEc-cCCCCCeEEEEEcC
Q 035621 65 SVHLYNLWSSTPLHNI--PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK------GDILRSF-SAHDKPVSCLKISP 135 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~-~~~~~~v~~~~~~~ 135 (387)
+|++|.+........- ...+.+. +|-+.-+.+. ..+++=.+.. ..+.+.. ..|...+.++.|+.
T Consensus 110 tiKlWKiyeknlk~va~nnls~~~~----~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 110 TIKLWKIYEKNLKVVAENNLSDSFH----SPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred eeeeeeeecccchhhhccccccccc----cccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 9999998655322111 1111111 1111000000 0011100000 0111222 46888899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-----CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-----DSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
|...++++ .|=.|.+|++... .....+..+++|. .-|++..|+|.. .+.+.-.+..|.|++-|+
T Consensus 183 D~et~lSa-DdLrINLWnl~i~---------D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEII---------DGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred chheeeec-cceeeeecccccc---------CCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEEecCCCcEEehhh
Confidence 88877765 4678899988321 1222333444443 357888899886 466777777899999999
Q ss_pred CCCcE------EEEEe-----------cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc------ceeEe
Q 035621 211 LNGTH------LSTVT-----------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG------QELVT 267 (387)
Q Consensus 211 ~~~~~------~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~ 267 (387)
+.... +.... .-..|..+.|+++|+++++-+. -++++||.+.......... .++..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHh
Confidence 84321 11111 1246888999999999987654 4799999987432211000 00000
Q ss_pred eccccccc---EEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 268 LANRHDGV---VVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 268 ~~~~~~~~---v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
. -.... -..+.||.|.+.+++|+......+|-+.
T Consensus 331 ~--YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 331 V--YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred h--hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 0 01112 2457888899999999998888888744
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=6e-10 Score=95.51 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=133.9
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
+..+.+|+..|+.++--.+.+-+++++.|+++++|.++...+. ..+..+..+++.|..+|.++.|..+. ++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~ 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADL--RSIA 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeecc--ceee
Confidence 4567799999999887778888999999999999999543222 24455778889999999999998774 6666
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC--CCCeEEEE-ccCCcEEEEeccccccccccccceeEeeccc
Q 035621 198 SCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP--TETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANR 271 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 271 (387)
++ ||-|++||.--++++.... .++.+..+..-| +...+.++ +...+++++|.+........ .+. -..+
T Consensus 801 Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~---kVc-na~~ 874 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL---KVC-NAPG 874 (1034)
T ss_pred ec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE---Eec-cCCC
Confidence 54 7899999988777766443 223333333223 44555555 56899999999875433221 111 1124
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
..+.+.+++..+.|+.++.+-..|.|.+.|.++|+.+..+..
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 456789999999999999999999999999999998876653
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=1.2e-07 Score=77.93 Aligned_cols=216 Identities=18% Similarity=0.260 Sum_probs=136.6
Q ss_pred CCcEEEEeCCCCceeEeccCCC--CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccC
Q 035621 17 EGPITAYNPSSGAILAHFSGSR--SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTAD 94 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (387)
+|.|..||..+|+.+....-.. ....+.....++. +++++.++.+..||..+|+.+..+..++++.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGR-----VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTE-----EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCE-----EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence 6899999999999988775311 1111112212222 2224689999999999999988887766554443 334
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEc-cCCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILRSF-SAHD---KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
+..++++..++.+..+|..+|+.+... .... ..........++..++.+..++.|..+|+ .++.
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~------------~tG~ 143 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP------------KTGK 143 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET------------TTTE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec------------CCCc
Confidence 456677778889999999999998874 3221 11122233334778888888999999998 4455
Q ss_pred ceEeeeccCCC----------eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE
Q 035621 171 MLQKFVAHNDS----------VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 171 ~~~~~~~~~~~----------i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 240 (387)
.+......... +..-... . +..++.++.++.+..+|+.+++.+.... ...+.. ...+.+..++++
T Consensus 144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~ 218 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPISSFSDINGSPVI-S--DGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVT 218 (238)
T ss_dssp EEEEEESSTT-SS--EEEETTEEEEEEC-C--TTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEE
T ss_pred EEEEeecCCCCCCcceeeecccccceEE-E--CCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEE
Confidence 55544443211 1111111 1 2366666777754444999999775443 333333 245677888888
Q ss_pred ccCCcEEEEeccccc
Q 035621 241 GSDGLIYKGLLKYQS 255 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~ 255 (387)
+.++.+..||++++.
T Consensus 219 ~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 219 SSDGRLYALDLKTGK 233 (238)
T ss_dssp ETTTEEEEEETTTTE
T ss_pred eCCCEEEEEECCCCC
Confidence 899999999999854
No 304
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.03 E-value=1.6e-06 Score=78.80 Aligned_cols=286 Identities=10% Similarity=0.077 Sum_probs=160.5
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-ee-EEEcCccceee-eccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-RG-LTFAGKPFIAA-SHISPTTGSGSVHLYNLWSSTPLHNIPVPE 84 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~-~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~ 84 (387)
+..++.++.++.|+-.|..+|+.+..+....... .. ..+.....+.. ..++.++.++.|..+|.++++.+..+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4456677788999999999999887765332200 00 00010000111 233346789999999999999988776543
Q ss_pred C------ee-eEEeccCCCEEEEec---------CCCcEEEEeCCCCceeEEccCCCC--------------------Ce
Q 035621 85 P------VA-PLATTADGSYLFTGG---------LSGNVYAISVPKGDILRSFSAHDK--------------------PV 128 (387)
Q Consensus 85 ~------v~-~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~--------------------~v 128 (387)
. +. ...+. +..++.++ .+|.+..+|..+|+.+..++.... .+
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 3 11 11222 24555554 367899999999998877643211 01
Q ss_pred -EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCe------E
Q 035621 129 -SCLKISPDGSLLISGGDDG------------------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV------T 183 (387)
Q Consensus 129 -~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~ 183 (387)
...++.+.+..++.++.++ .|.-+|. .+++..-.++.-.... .
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~------------~tG~~~W~~~~~~~~~~~~~~~s 286 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA------------DTGKVKWFYQTTPHDLWDYDGPN 286 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC------------CCCCEEEEeeCCCCCCcccccCC
Confidence 1234455566788887665 5767776 3333333332110000 0
Q ss_pred EEEEee--CCCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE------------------
Q 035621 184 AITCCI--GSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA------------------ 240 (387)
Q Consensus 184 ~~~~~~--~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------ 240 (387)
...+.+ ..++ ..++.++.+|.+...|.++|+.+...... ...++.+| ..++++
T Consensus 287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~ 362 (488)
T cd00216 287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKK 362 (488)
T ss_pred CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCC
Confidence 001111 0111 36788888999999999999998876532 11223333 333332
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccE--EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV--VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
..+|.+.-.|..+++.............. .-..+. ..+. ..+..|+.++.||.|+.+|.++|+.+.+.+..
T Consensus 363 ~~~G~l~AlD~~tG~~~W~~~~~~~~~~~-~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 363 PGKGGLAALDPKTGKVVWEKREGTIRDSW-NIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CCceEEEEEeCCCCcEeeEeeCCcccccc-ccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 23567777777775433221111000000 000111 1122 24578888899999999999999999988753
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=1e-06 Score=70.15 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=130.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEec---cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHF---SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++.+++|++||.- .|..|.|-..++. ..+... +.....=+-++|+|+..+++. +...|+|+++|+...+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~----a~S~G~i~vfdl~g~~- 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAY----AESTGTIRVFDLMGSE- 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEE----EcCCCeEEEEecccce-
Confidence 4567899988876 4677888766542 122222 222233678999997666554 8899999999996533
Q ss_pred ccccC--------CCCCeeeEEeccCC------CEEEEecCCCcEEEEeCCCC-----ceeEEcc---CCCCCeEEEEEc
Q 035621 77 LHNIP--------VPEPVAPLATTADG------SYLFTGGLSGNVYAISVPKG-----DILRSFS---AHDKPVSCLKIS 134 (387)
Q Consensus 77 ~~~~~--------~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~-----~~~~~~~---~~~~~v~~~~~~ 134 (387)
+..+. ....|..+.|.+.. ..|++-...|.++-|-+..+ +..+.+. .+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 22332 22456667775532 24556667888877765322 2333332 246789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC------cEEEE
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC------TCKFW 208 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~------~i~iw 208 (387)
|..++|++|+....= +. . -.+....+++-.+..+..--..++...|+ +..+|
T Consensus 157 p~h~LLlVgG~~~~~---~~----------------~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQ---DG----------------M---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred CCCCEEEEeccCCCC---Cc----------------c---ccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 998888887653210 00 0 00111122221111111001112222221 12334
Q ss_pred eCCCCcEEEE-EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621 209 RLLNGTHLST-VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 209 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 255 (387)
.+-+.+.... -.....|..|..+|||..|++...+|.|.+|++..-.
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 3333222211 1246789999999999999999999999999998743
No 306
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.02 E-value=1.5e-06 Score=78.06 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=122.8
Q ss_pred ccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCcccccCCCCCC
Q 035621 92 TADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG----VIATVPIFQLVDEHTDDKN 166 (387)
Q Consensus 92 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~ 166 (387)
.|||+.+... -..+.+.+.|.++.+...++.- .+....++++|+++++++.+.+. ++..-+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a------------ 267 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA------------ 267 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeecc------------
Confidence 3455444222 2334567778777766666543 23456788999999998887432 1222211
Q ss_pred CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-----CcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 167 PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-----GTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
.....+..+... .+. .+.++ +++... .+++|.+.|..+ .+.+..+..+.....+.++|||+++++++
T Consensus 268 ~e~d~~vvfni~--~ie--a~vkd--GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 268 AERDWVVVFNIA--RIE--EAVKA--GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred ccCceEEEEchH--HHH--HhhhC--CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence 000011111000 000 11223 344444 367899999998 56778888899999999999999998887
Q ss_pred c-CCcEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----------ccE
Q 035621 242 S-DGLIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK----------RQV 307 (387)
Q Consensus 242 ~-dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~ 307 (387)
. +..+.++|+......... ....+.... .-.......+|.++|..+.|--.|..|..||+.. ...
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v 418 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI 418 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence 6 899999999874321100 011111111 1133456778999999888889999999999987 455
Q ss_pred EEEeecc
Q 035621 308 VMVLKNE 314 (387)
Q Consensus 308 ~~~~~~~ 314 (387)
+.++..|
T Consensus 419 ~~k~dV~ 425 (635)
T PRK02888 419 VQKLDVH 425 (635)
T ss_pred eecccCC
Confidence 5555544
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=2e-06 Score=67.47 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=118.5
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA 87 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~ 87 (387)
..+++.|+..+.+.--|.++|+.+.+-. -..++.+- ..+....++.|...|.+++.+..+|.....+...+.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~s-----a~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECS-----AIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeee-----eEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 4578889999999999999998876432 11222222 22233345558899999999999998888887666655
Q ss_pred e-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 88 P-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 88 ~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+ ....+++..+..|+.|++.+..|.++..++...+-..+...+-+..| ++. |..+...|.+.--..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~----------- 164 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTK----------- 164 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEcc-----------
Confidence 4 34567899999999999999999999988888764444444455666 444 444444454433322
Q ss_pred CCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCce
Q 035621 166 NPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI 225 (387)
Q Consensus 166 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v 225 (387)
.......+-.| .++|.+- |.--+..+..+.-||.+.-+| ..|+.+..+...++|
T Consensus 165 --~~~~~~~~w~~~~~~PiF~s---plcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 165 --NPYSSTEFWAATRFGPIFAS---PLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred --CCCCcceehhhhcCCccccC---ceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCce
Confidence 11111222111 2233221 111123445555677777776 556666655544443
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-09 Score=89.05 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=149.8
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPI 154 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 154 (387)
.+.|...|+.+..+. .+++.+++.||.++.|--..- +.+..+..|...|.+++.+-++.++.+.+. |..++++|+
T Consensus 5 symhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 344666666655543 468999999999999985331 344556678889999999999999999887 999999998
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcE-EEEEe--cCCceeEEEe
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTH-LSTVT--FPCAIMGLAL 230 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~ 230 (387)
.+..-. ....+..-.+.+..+ .++...- .+-++.-.++.+.++|-....+ ...+. |-.+|.++.+
T Consensus 84 En~Dmi----------nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 84 ENFDMI----------NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred eccchh----------hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 432111 011111112222211 1111000 2233334578999999775542 22222 6789999999
Q ss_pred CCCCCeEEEEccCCcEEEEecccc-c-----cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQ-S-----RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.|.+..+++....|.|..|..... . .....+...-............++.|+|+|..+.+-+.|..|+++++.+
T Consensus 153 ~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 153 NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 999999999999999999988730 0 0111111111111223456788999999999999999999999999999
Q ss_pred ccEEEEeec
Q 035621 305 RQVVMVLKN 313 (387)
Q Consensus 305 ~~~~~~~~~ 313 (387)
|++++.+..
T Consensus 233 GklvqeiDE 241 (558)
T KOG0882|consen 233 GKLVQEIDE 241 (558)
T ss_pred chhhhhhhc
Confidence 999887764
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=5.9e-09 Score=84.27 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=101.7
Q ss_pred cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEec
Q 035621 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 251 (387)
..+.|.++.|... ++++..|..+|.|..+|++.+ .+...+.|++.|+++..-. ++.+|++.+.+|.|.+||.
T Consensus 251 sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 4566777777765 389999999999999999864 5778888999999998877 7899999999999999999
Q ss_pred cccccccccccceeEeecccccccEEEE--EEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621 252 KYQSRQQMHKGQELVTLANRHDGVVVSV--MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (387)
+.-... .-+....+|...-.-+ -..+....+++++.|...|||.++.|.++.+++....
T Consensus 329 R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 329 RATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred hhhhcc------cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 873321 1123334565443333 3346677899999999999999999999999886533
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=1.5e-06 Score=71.22 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=142.3
Q ss_pred CCCeeeEEecc-CCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeC-----CCcEEEEe
Q 035621 83 PEPVAPLATTA-DGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGD-----DGVIATVP 153 (387)
Q Consensus 83 ~~~v~~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd 153 (387)
+.....++.+| ....++.+-.-| ...+||..+++....+....+.- =.-.|++||++|++.-. .|.|-+||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 45567788899 556677776666 57899999999887765433221 24679999999998754 47899999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE------------------eCCCcEEEEeCCCCcE
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC------------------SMDCTCKFWRLLNGTH 215 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~------------------~~d~~i~iwd~~~~~~ 215 (387)
... ....+.++..|.-.-..+.+.|++ ..|+.+ +.+..+...|..+|+.
T Consensus 84 ~~~-----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 84 AAR-----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred CcC-----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 941 445566676666555667777775 444443 2234577778888988
Q ss_pred EEEEe-----cCCceeEEEeCCCCCeEEEEccCCc-------EEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 216 LSTVT-----FPCAIMGLALDPTETDFFAAGSDGL-------IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 216 ~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
+.... +...+..+++.++|..++..-..|. +.+++.... ....... ......-.+.+-+|++++
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p--~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAP--EEQWRRLNGYIGSIAADR 226 (305)
T ss_pred eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCC--hHHHHhhCCceEEEEEeC
Confidence 87754 3457999999999877776544332 333332221 0000000 000113356799999999
Q ss_pred CCCEEEE-EeCCCcEEEEECCCccEEEEeec
Q 035621 284 EGKNLVS-AAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 284 ~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
++.++++ +-..+.+.+||..+++++....-
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 9987754 45678899999999999987653
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.1e-07 Score=86.07 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=82.8
Q ss_pred CccccCCCcEEEeeC----CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 1 LLHHLPCNEVILTSS----PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 1 vl~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+.+|+|...++|+++ ..|.|.||- .+|++..... .+-.+++++|+|...+++. +-.-|.+.+|...+.+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~----gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQ----GWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhh----ccccceeEEEecCCcee
Confidence 467999999999886 458899986 5677544332 2223677999997766554 77889999999876654
Q ss_pred cc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621 77 LH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 77 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 113 (387)
-. ...|+.++..+.|+++|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33 33478899999999999999999999999999874
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.3e-07 Score=83.15 Aligned_cols=206 Identities=12% Similarity=0.150 Sum_probs=140.8
Q ss_pred EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEeCCcccccCC
Q 035621 89 LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP-VSCLKISPDGSLLISGGDDGV-----IATVPIFQLVDEHT 162 (387)
Q Consensus 89 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~ 162 (387)
-+|++.+..++.|+.+|.|.+++ +.-+.++.++++... |..+....+..+|++.+.|+. +++|++.+....
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n-- 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN-- 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC--
Confidence 35678888999999999999987 344555788888777 555544444468888877754 899999553211
Q ss_pred CCCCCCccce--Eeeec-----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CC--cEEEEEecCCceeEEEe
Q 035621 163 DDKNPDDLML--QKFVA-----HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NG--THLSTVTFPCAIMGLAL 230 (387)
Q Consensus 163 ~~~~~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~v~~~~~ 230 (387)
....++ ..+.. ...++.+++++.+- ..++.|-.+|.|..+.-. .. +.........+|+.+++
T Consensus 106 ----~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 106 ----NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ----CCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 112233 12222 35678889988874 889999999999988532 11 11222235689999999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (387)
..++..++-......|.+|.+... . +.......|...++|-.+++....+++++.. .+.+|+.+..++...
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr-------~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGR-------T-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA 250 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCC-------C-cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence 999987444444557888888741 1 2333345688889999998766656665444 699999998877777
Q ss_pred ee
Q 035621 311 LK 312 (387)
Q Consensus 311 ~~ 312 (387)
+.
T Consensus 251 f~ 252 (933)
T KOG2114|consen 251 FE 252 (933)
T ss_pred ec
Confidence 76
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=9e-09 Score=80.02 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=94.1
Q ss_pred eccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCC
Q 035621 91 TTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~ 164 (387)
.+-.++.+++++.||.+.+++.+.-.. .+.+..-...-.+..+...++.+.++.. -+..+.|+++.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p-------- 168 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP-------- 168 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc--------
Confidence 333456799999999999998755211 1111111111122223334444444322 12345555521
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCC-CCeEEEEc
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPT-ETDFFAAG 241 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~ 241 (387)
....+.... ....|.+++-+|.. .+++++|+.||.+.+||.++......+- |+.++..+-|+|. +..|++++
T Consensus 169 ---~~t~~~~~~-~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 169 ---IKTLIPSKK-ALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ---ccccccccc-ccccchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 111111111 22348888888876 5788999999999999999885443332 7889999999995 58899999
Q ss_pred cCCcEEEEeccc
Q 035621 242 SDGLIYKGLLKY 253 (387)
Q Consensus 242 ~dg~i~i~d~~~ 253 (387)
+||.+.-||-.+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999874
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1e-07 Score=86.30 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=91.1
Q ss_pred EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621 44 LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 123 (387)
..|+|...+.+..-++....|.|.||- ++|++.....-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 456665544444444566788898884 6788777777777788899999988899998899999999877776666678
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
|..+|..+.|+|+|..++++..-|.+.+|...
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999999999999999999999999874
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=5.5e-09 Score=58.56 Aligned_cols=39 Identities=36% Similarity=0.695 Sum_probs=36.6
Q ss_pred CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
++++.++++|...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999997
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.5e-07 Score=83.29 Aligned_cols=156 Identities=18% Similarity=0.285 Sum_probs=118.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT 204 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~ 204 (387)
...++|++++ +++++-|+.+|.+++++.. +.+ .+...|... +..|.++++|+.||+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-------------~~~-~~~~~~s~~--------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-------------GNP-KTNFDHSSS--------ILEGEYVASCSDDGK 94 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-------------Ccc-ccccccccc--------ccCCceEEEecCCCc
Confidence 3456777774 5789999999999999872 222 333334333 344799999999999
Q ss_pred EEEEeCCCCcEEEEEecCCceeEEEeCCC-----CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 205 CKFWRLLNGTHLSTVTFPCAIMGLALDPT-----ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
+.|-.+-+.+...++..+.++.+++++|+ .+.+++|+..| +.++.-+--.. ..........++|.++
T Consensus 95 v~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i 166 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSI 166 (846)
T ss_pred EEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEE
Confidence 99999999999999999999999999998 47899999988 77765543211 1111233567899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 280 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
.| .|.++|-++.+| |+|||+.+++.+..++...
T Consensus 167 ~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 167 KW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred Ee--cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence 99 477888887776 9999999999998887554
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=1.5e-05 Score=65.47 Aligned_cols=234 Identities=15% Similarity=0.222 Sum_probs=147.3
Q ss_pred ccccC-CCcEEEeeCCCCc-EEEEeCCCCceeEeccCCCCCce--eEEEcCcccee-eeccccCCCCCeEEEEEcc-CCC
Q 035621 2 LHHLP-CNEVILTSSPEGP-ITAYNPSSGAILAHFSGSRSPRR--GLTFAGKPFIA-ASHISPTTGSGSVHLYNLW-SST 75 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~-~~~~~~~~~d~~v~vw~~~-~~~ 75 (387)
++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. --.|++++.++ .+.--.....|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 46778 5667777877665 78899999999887765444321 25677754433 2222234567899999998 445
Q ss_pred cccccCC-CCCeeeEEeccCCCEEEEec------------------CCCcEEEEeCCCCceeEE--c--cCCCCCeEEEE
Q 035621 76 PLHNIPV-PEPVAPLATTADGSYLFTGG------------------LSGNVYAISVPKGDILRS--F--SAHDKPVSCLK 132 (387)
Q Consensus 76 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~~~ 132 (387)
.+.++.. .-....+.+.|||+.|+++. .+-.+.+.|..+|+++.. + ..|...|+.++
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa 169 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA 169 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence 5556653 33567788999998887762 122466777788888776 4 33778899999
Q ss_pred EcCCCCEEEEEeCCCc-------EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCc
Q 035621 133 ISPDGSLLISGGDDGV-------IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCT 204 (387)
Q Consensus 133 ~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~ 204 (387)
+.++|..++..-..|. +.+++....... ...+......-.+.+-+|+++.++ .++ +|+=.-+.
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-------~~~p~~~~~~l~~Y~gSIa~~~~g--~~ia~tsPrGg~ 240 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-------LPAPEEQWRRLNGYIGSIAADRDG--RLIAVTSPRGGR 240 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-------ccCChHHHHhhCCceEEEEEeCCC--CEEEEECCCCCE
Confidence 9999876665544432 333332110000 000001122345678899998875 544 55556788
Q ss_pred EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621 205 CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 247 (387)
+.+||..+++.+...... .+..++-.+++ +++.+..|.+.
T Consensus 241 ~~~~d~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLP-DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred EEEEECCCCCEeeccccC-ceeeeeecCCc--eEEeCCCccEE
Confidence 999999999988776543 34556666665 44444445543
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=1.9e-08 Score=56.35 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=32.8
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 344568999999999999999999999999999997
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=1.2e-07 Score=86.31 Aligned_cols=175 Identities=14% Similarity=0.137 Sum_probs=124.6
Q ss_pred CCCCCeEEEEEccCCCcccccCCCC-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
|+-...+..+|+.+.+..+...... .|.-++ .+++++++|...|+|.+-|.++.+.++++..|.+.|..+.. .|+
T Consensus 153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN 228 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN 228 (1118)
T ss_pred cchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCC
Confidence 3444456666776666555544332 344443 46789999999999999999999999999999999987766 688
Q ss_pred EEEEEeCC---------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621 139 LLISGGDD---------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR 209 (387)
Q Consensus 139 ~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd 209 (387)
.|++++.. .-|++||+|..... ..+.-+.++ .-+.|+|.- ...++.++..|...+-|
T Consensus 229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral------------~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRAL------------SPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred eEEEeecccccccccccchhhhhhhhhhhcc------------CCcccccCc-hhhhhcccc-cceEEEEecccceeecc
Confidence 89988764 45789999654222 222222222 346677765 46788888899999999
Q ss_pred ---CCCCc-EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621 210 ---LLNGT-HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 210 ---~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
+.+.. .+..+. ....+..++++++++.++.|..+|.|.+|.-.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 33331 122222 44569999999999999999999999999843
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.77 E-value=2.2e-05 Score=65.35 Aligned_cols=273 Identities=13% Similarity=0.143 Sum_probs=157.5
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccce--eee----ccccCCCCCeEEEEEccCCCcccccCCCC-------
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI--AAS----HISPTTGSGSVHLYNLWSSTPLHNIPVPE------- 84 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~----~~~~~~~d~~v~vw~~~~~~~~~~~~~~~------- 84 (387)
+.++|+|..+++.+..+...-. -.+..+|++.. .++ +..-|-..-.|.+||..+-.+...+..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999998877753322 23555664432 222 23334455679999999887776555332
Q ss_pred -CeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 85 -PVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 85 -~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
....++++.|++++++.. -...|.+.|+..++.+..+... ....+--+ ..+-+.+-|.||++....+...-..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~- 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE- 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE-
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCE-
Confidence 234578899999888764 3457999999999988877532 12222112 2346888899999988887421100
Q ss_pred CCCCCCCccceEeeeccCCCeE-EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--EEEec-----------CCceeE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVT-AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL--STVTF-----------PCAIMG 227 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----------~~~v~~ 227 (387)
..+....|.....++. .-++... +..++--+.+|.|+--|+...... ..+.. ++...-
T Consensus 171 ------~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 171 ------AQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp ------EEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred ------eEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence 0111112222222222 2222222 245555778999999988766532 22221 234455
Q ss_pred EEeCCCCCeEEEEcc--------CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEE-eCCC
Q 035621 228 LALDPTETDFFAAGS--------DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSA-AEDG 295 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg 295 (387)
+++++..+.|++--. ++ .|.++|+.+ .+.+.++. -..++.+++.+.+.+ +|++. ..++
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t--------~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT--------HKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT--------TEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCC--------CeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCC
Confidence 778776666665322 22 356666666 23333332 234577999998776 55443 4689
Q ss_pred cEEEEECCCccEEEEeecc
Q 035621 296 SVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~ 314 (387)
.+.+||..+|++++++..-
T Consensus 313 ~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEETTT--EEEEE---
T ss_pred eEEEEeCcCCcEEeehhcc
Confidence 9999999999999999854
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-06 Score=72.71 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=139.3
Q ss_pred EEEEEccCCCcccccC-CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEE
Q 035621 66 VHLYNLWSSTPLHNIP-VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLIS 142 (387)
Q Consensus 66 v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 142 (387)
+++.+..+.+....+. +...|..++|+|..+ ++..++.+..|.+.|+++...+..+..+ ..+.+++|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5666655555554333 345799999999766 7888899999999999999988888877 789999998865 47778
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCC----CCceEEEEeCCCcEEEEeCC----C
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGS----FNSIIISCSMDCTCKFWRLL----N 212 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~----~ 212 (387)
|..+|.|.+||+++... ++..+.+ ...+|..++..+.. .+.+++..+.+ +..|++. .
T Consensus 254 Gl~nG~VlvyD~R~~~~-----------~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG-----------PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred eccCceEEEEEccCCCc-----------hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 88999999999975321 1122211 12233333221110 02445544433 4566543 2
Q ss_pred CcEEEEEecCCceeEEEeCCCCCeEEEEccCC----cEEEEeccccccccccccceeEeecccc-ccc------EEEEEE
Q 035621 213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG----LIYKGLLKYQSRQQMHKGQELVTLANRH-DGV------VVSVMM 281 (387)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~------v~~~~~ 281 (387)
..++..+..++...++++++..+.++...... .++..-.+... ..+..+......+ .+. -..+.-
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~----~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~ 396 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDF----RDGFPVCGKRRTYFGSKQTKLSTTQAIRA 396 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeecc----ccCceeeeecccccCCcccccccccceec
Confidence 33444445567777888888766666554321 01100000000 0011111111111 000 011112
Q ss_pred ecCCCEEE-EEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 282 MNEGKNLV-SAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 282 s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
.++.++++ +|+.-+.+.+||..+.+.++.+.-. .+|.+++..
T Consensus 397 ~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~ 439 (463)
T KOG1645|consen 397 VEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS--EPVLDICPN 439 (463)
T ss_pred cccccEEEEecCCcceeEEeccchhheeeecccC--cceeeccee
Confidence 34555555 5666778999999999999999765 356666443
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=6.6e-06 Score=75.05 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=131.6
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCC-eEEEEEccCC---C--
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSG-SVHLYNLWSS---T-- 75 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~-~v~vw~~~~~---~-- 75 (387)
+|++.+..+|.|+.+|.|.+.+ ...+.++.++.+... |..+....+..++.+..-....+- .+++|+++.. +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 6889999999999999999988 356666888888777 555544444333333111011122 6999999643 2
Q ss_pred -cc---cccC-----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC----CCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 76 -PL---HNIP-----VPEPVAPLATTADGSYLFTGGLSGNVYAISVP----KGDILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 76 -~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
++ +.+. .+.++.+++.+.+-+.+|+|-.+|.|..+.-. .+....-......+|+.+++..+++.++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 22 1122 23578899999999999999999999988531 11111112234679999999988876333
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 220 (387)
+..-..|.+|.+.. .......+..|..+++|..+++.. ..+++++ +..+.+||.....+-..+.
T Consensus 189 v~Tt~~V~~y~l~g-----------r~p~~~~ld~~G~~lnCss~~~~t--~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 189 VATTEQVMLYSLSG-----------RTPSLKVLDNNGISLNCSSFSDGT--YQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEecceeEEEEecC-----------CCcceeeeccCCccceeeecCCCC--ccEEEec-CceEEEEcCCCcceeeeec
Confidence 33346788998831 112345577888899999988764 3244443 3568999887655554444
No 323
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.72 E-value=2.6e-05 Score=71.00 Aligned_cols=230 Identities=12% Similarity=0.138 Sum_probs=134.3
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----c-eeEEEcCccceeeec---cccCCCCCeEEEEEccCCCcccc
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----R-RGLTFAGKPFIAASH---ISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
..++.++.+|.|+-+|.++|+.+..+...... + .+..+..+..+..+. ...++.++.+..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67778888999999999999998777543221 1 111222211111110 00113468899999999988776
Q ss_pred cCCCCC---------------------e-eeEEeccCCCEEEEecCCC------------------cEEEEeCCCCceeE
Q 035621 80 IPVPEP---------------------V-APLATTADGSYLFTGGLSG------------------NVYAISVPKGDILR 119 (387)
Q Consensus 80 ~~~~~~---------------------v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~ 119 (387)
++...+ + ...++.+.+..++.++.++ .|.-+|..+|+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 653210 0 1234455567788887665 79999999999987
Q ss_pred EccCCCCCe------EEEEEc----CCCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 120 SFSAHDKPV------SCLKIS----PDGS---LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 120 ~~~~~~~~v------~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
.++.-.... ....+. -++. .++.++.+|.+...|. .+++.+-...... ..++
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~------------~tG~~~W~~~~~~---~~~~ 335 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDR------------TTGKLISARPEVE---QPMA 335 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEEC------------CCCcEeeEeEeec---cccc
Confidence 764211111 001111 1333 6788889999999988 3444443322110 0111
Q ss_pred EeeCCCCceEEE-----------------EeCCCcEEEEeCCCCcEEEEEecC---------CceeEEEeCCCCCeEEEE
Q 035621 187 CCIGSFNSIIIS-----------------CSMDCTCKFWRLLNGTHLSTVTFP---------CAIMGLALDPTETDFFAA 240 (387)
Q Consensus 187 ~~~~~~~~~l~s-----------------~~~d~~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~ 240 (387)
..| +..++. ...+|.+.-.|+.+++.+.+.... .+...-.....+..++++
T Consensus 336 ~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g 412 (488)
T cd00216 336 YDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG 412 (488)
T ss_pred cCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence 122 112221 124678999999999988877644 111111111256789999
Q ss_pred ccCCcEEEEecccccc
Q 035621 241 GSDGLIYKGLLKYQSR 256 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~ 256 (387)
+.||.++.+|..+++.
T Consensus 413 ~~dG~l~ald~~tG~~ 428 (488)
T cd00216 413 AADGYFRAFDATTGKE 428 (488)
T ss_pred CCCCeEEEEECCCCce
Confidence 9999999999988543
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=9.9e-09 Score=93.03 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=136.5
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQLVD 159 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 159 (387)
+....+|++|+.+.++|+.|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-. -..+|++..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--- 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--- 1176 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc---
Confidence 446789999999999999999999999999999999999999999999999999998777665443 367898832
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCCC
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPTE 234 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~ 234 (387)
...+.+++. .-.++.|+... ..-+.|..-....+||+.++.++.++- ....-+...|+|+.
T Consensus 1177 --------~~~~~Hsf~----ed~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1177 --------TGGPRHSFD----EDKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred --------ccCcccccc----ccceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 233333333 23356666553 223333344568899999998776632 12234778899998
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
..++- || .+||.+.......+.. .. .-..-.|+|.|.-++.-++ |||+++.++++....
T Consensus 1243 ~LIln---dG--vLWDvR~~~aIh~FD~---------ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1243 TLILN---DG--VLWDVRIPEAIHRFDQ---------FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ceEee---Cc--eeeeeccHHHHhhhhh---------he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 88773 33 5799987432221110 11 1112258999988887654 899999888876653
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.71 E-value=7.7e-06 Score=72.30 Aligned_cols=226 Identities=15% Similarity=0.184 Sum_probs=118.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++++|+|+++++++ ||.-.|+.......... +.....+|.+...+.. -...+.|.++.--+.+....++
T Consensus 38 ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv-----~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAV-----LESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp EEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEE-----E-TTS-EEEEETTEE-TT----
T ss_pred EEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEE-----EECCCeEEEEEcCccccceEEc
Confidence 57899999999855 68888888544333222 2345678887544433 3447889997433344444555
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
.+..+..+-. |..|+..+. +.|.+||+.+++.++.+... +|..+.|++++++++..+.+ .+.+++.....-..
T Consensus 107 ~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 107 LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp -SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence 4444444443 777777654 47999999999999998733 48999999999999988866 56676652110000
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
.+...-.........-...|.+..|..+ -++.|. .. +|+- +-.|+.-..-..+.++.=+.+.|..+.++...
T Consensus 180 -~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT-~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 180 -IPEEGVEDAFELIHEISERIKSGCWVED---CFIYTT-SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp -BTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE--TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred -ccccCchhceEEEEEecceeEEEEEEcC---EEEEEc-CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 0000111133333333567888888643 344443 33 6665 34444332223456677777888788899898
Q ss_pred cCCcEEEEeccc
Q 035621 242 SDGLIYKGLLKY 253 (387)
Q Consensus 242 ~dg~i~i~d~~~ 253 (387)
.++.+..+.+..
T Consensus 252 r~~~v~~~~ld~ 263 (443)
T PF04053_consen 252 RDGNVISYELDL 263 (443)
T ss_dssp TT--EEEEE--H
T ss_pred CCCCEEEEEECH
Confidence 999998887754
No 326
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.69 E-value=0.00026 Score=64.88 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=68.2
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCcee---EEE-cCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRG---LTF-AGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV 82 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~---~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~ 82 (387)
+..++.++.++.|+-.|..+|+.+-++.... ..+.. ... +....+....++.++.++.+.-.|..+|+.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567777778899999999999887764321 11111 100 111111122334467899999999999998876653
Q ss_pred CCCe--eeEEecc--CCCEEEEec------CCCcEEEEeCCCCceeEEcc
Q 035621 83 PEPV--APLATTA--DGSYLFTGG------LSGNVYAISVPKGDILRSFS 122 (387)
Q Consensus 83 ~~~v--~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 122 (387)
...- ..+.-+| .+..++++. .+|.|..+|.++|+.+..+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 2110 1111122 123455543 26889999999998876653
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=9.2e-06 Score=72.55 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI- 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~- 80 (387)
+++..+++++.|+.-|.+++|+-..++....- .+..+.+..+..++... .++.|+..|.|.++-++.+.+....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~----lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY----LVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH----hhhhhcCCceEEeehhhccCCCccee
Confidence 56678899999999999999997665543222 22334455566777433 3344899999999988775432221
Q ss_pred ------CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc----eeEEccCCCCCeEEEEEc
Q 035621 81 ------PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD----ILRSFSAHDKPVSCLKIS 134 (387)
Q Consensus 81 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~ 134 (387)
.|+..|++++|++++..+++|...|.|..-.+.... ..+.+-.....|..+...
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 156789999999999999999999999998887621 112222334566666654
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=4.3e-05 Score=60.22 Aligned_cols=103 Identities=9% Similarity=0.007 Sum_probs=67.9
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV 86 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v 86 (387)
|++++.|...|.+++.+.++|.....+..-. .|.+ ....+ ....+..++.|+..+..|..+..++...+..+.+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~----~~glIycgshd~~~yalD~~~~~cVykskcgG~~ 137 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDF----DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT 137 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcC----CCceEEEecCCCcEEEecccccceEEecccCCce
Confidence 6788999999999999999998877765322 2222 12223 2233445889999999999998888887766543
Q ss_pred -eeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621 87 -APLATTADGSYLFTGGLSGNVYAISVPKG 115 (387)
Q Consensus 87 -~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 115 (387)
..-+..|-...|+.+...|.+.--+.+..
T Consensus 138 f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 138 FVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eccceecCCCceEEEEeccceEEEEccCCC
Confidence 33455553344555555666655555444
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.9e-06 Score=71.58 Aligned_cols=234 Identities=11% Similarity=0.055 Sum_probs=133.9
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-ccc
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHN 79 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~ 79 (387)
++|||..+ ++..++.+..|+|.|+++...+..+..+ .++++++|.-+. ...+..|...|.|.+||+...+- +..
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde---~h~IYaGl~nG~VlvyD~R~~~~~~~e 274 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE---RHVIYAGLQNGMVLVYDMRQPEGPLME 274 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC---cceeEEeccCceEEEEEccCCCchHhh
Confidence 68999877 8889999999999999999999888877 779999998753 44556688999999999976532 222
Q ss_pred cC---CCCCeeeEEec------cCCCEEEEecCCCcEEEEeCCCC--ceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCC-
Q 035621 80 IP---VPEPVAPLATT------ADGSYLFTGGLSGNVYAISVPKG--DILRSFS-AHDKPVSCLKISPDGSLLISGGDD- 146 (387)
Q Consensus 80 ~~---~~~~v~~~~~~------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d- 146 (387)
+. ...+|..++.- +.|.+|+....+ +..|++... .....++ +..+...++++.+-.+.++.....
T Consensus 275 ~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 275 LVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred hhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCC
Confidence 22 12344444332 334444444332 566665322 1122121 234556667776644444333222
Q ss_pred C------cEEEEeCCcccccCCCCCCCCccceEee-ecc-CCCe-----EEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 147 G------VIATVPIFQLVDEHTDDKNPDDLMLQKF-VAH-NDSV-----TAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 147 g------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
. .+-.. ... ..+.++... ..+ .++- +..-+.+..+.-++..+...+.+.+||..++
T Consensus 353 pn~p~~r~il~~-~d~----------~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 353 PNFPQSRFILGR-IDF----------RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred CCCccceeeeee-ecc----------ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 1 01110 000 011111100 011 0000 0011122222334455566688999999999
Q ss_pred cEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEecc
Q 035621 214 THLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 252 (387)
+.++++....++..++... ++.-++..-.|..+++|..+
T Consensus 422 evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 422 EVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred heeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 9999999888998887764 33333344445567776543
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=4.8e-06 Score=75.31 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=126.1
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR 119 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 119 (387)
.+.|++++... ++-|+.+|.|++.+.+.. +...+.|... ..+|.++++|+.||.|.|..+-+.+...
T Consensus 41 ~is~~av~~~~------~~~GtH~g~v~~~~~~~~-~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAVHDKF------FALGTHRGAVYLTTCQGN-PKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHhhcce------eeeccccceEEEEecCCc-cccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35666665533 333789999999987433 3333333332 5689999999999999999998888777
Q ss_pred EccCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621 120 SFSAHDKPVSCLKISPD-----GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 120 ~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (387)
++. ...++.+++++|+ .+.+++|+.-| +.++.-.=+ .......+....++|.++.|. ++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl----------gnk~~v~l~~~eG~I~~i~W~----g~ 171 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL----------GNKDSVVLSEGEGPIHSIKWR----GN 171 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh----------cCccceeeecCccceEEEEec----Cc
Confidence 665 4678999999997 56899999988 766643111 011111455567899999985 47
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEEEEecCC-------ceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLSTVTFPC-------AIMGLALDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
+++-++.+| |++||+.+++.+..++.+. ....+.|.+.. .|+.| ...+|++..++
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 888888777 9999999999888887432 24467777654 34444 44478888777
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=2.2e-05 Score=70.81 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=131.1
Q ss_pred CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC----cEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG----NVYAISVPKGDILRSFSAHDKPVSCLKISP 135 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 135 (387)
.-..+.+.+.|.++.+...++........++++++|+++++.+.+. ++...+..+...+..+... .+ -++.+
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vk 286 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVK 286 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhh
Confidence 3345678888888888777777777778899999999998886432 3333333222222222110 00 13345
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
+|++... .++.|.+.|..... .....+.....-......+.++|++ ..+++++..+.++.|.|+.+.+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~--------~~~~~v~~yIPVGKsPHGV~vSPDG-kylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAA--------NAGSALTRYVPVPKNPHGVNTSPDG-KYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccc--------cCCcceEEEEECCCCccceEECCCC-CEEEEeCCCCCcEEEEEChhhhh
Confidence 7776665 35789999983200 0012333333345566788999986 34455555689999999988653
Q ss_pred ------------EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeEe-----ecccccccEE
Q 035621 216 ------------LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVT-----LANRHDGVVV 277 (387)
Q Consensus 216 ------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~-----~~~~~~~~v~ 277 (387)
..+..........+|.++|+...+-.-|..|..|++...-.... .....+.. ...+|.....
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~ 435 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM 435 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence 44555566778899999998777777899999999986311100 00011111 1223333323
Q ss_pred EEEEecCCCEEEEEe
Q 035621 278 SVMMMNEGKNLVSAA 292 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~ 292 (387)
.=.-.|||++|++..
T Consensus 436 g~t~~~dgk~l~~~n 450 (635)
T PRK02888 436 GETKEADGKWLVSLN 450 (635)
T ss_pred CCcCCCCCCEEEEcc
Confidence 333467888888763
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.7e-08 Score=91.59 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=140.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~ 80 (387)
++||-+.+.|+.|+..|.|++|++.+|.......+|..+|+-+.-+.++..... .++...--..+|+... +.+.+.+
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt--sss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT--SSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee--eccccCchHHHhccccccCccccc
Confidence 478899999999999999999999999999999999999999887764432211 1122233567898743 3333333
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-c---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-S---AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
..-.++.|+.....-+.|.......+||++++..+.++ . +....-++..|+|+.++++ .|| .+||++.
T Consensus 1185 ---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1185 ---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred ---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 34566778776555566666677999999998876653 2 1222336788999988776 455 5799943
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCe
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD 236 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 236 (387)
...++.|......+ .-.|+|.+ ..++.-+ .|||+++.+.++..+.- .-..+.|+..|..
T Consensus 1257 ------------~~aIh~FD~ft~~~-~G~FHP~g--~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1257 ------------PEAIHRFDQFTDYG-GGGFHPSG--NEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDV 1315 (1516)
T ss_pred ------------HHHHhhhhhheecc-cccccCCC--ceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccc
Confidence 34455554433222 23578875 5555544 39999998887776522 2245778888876
Q ss_pred EEEE
Q 035621 237 FFAA 240 (387)
Q Consensus 237 l~~~ 240 (387)
+++.
T Consensus 1316 mYa~ 1319 (1516)
T KOG1832|consen 1316 MYAM 1319 (1516)
T ss_pred hhhh
Confidence 6654
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=5.1e-05 Score=72.13 Aligned_cols=212 Identities=14% Similarity=0.072 Sum_probs=131.3
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CcccccC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI--FQLVDEH 161 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~ 161 (387)
..|.++.|..+.+.++.+...|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++.+-+- .-.....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57999999999999999999999999998776532 23334678999999999999999988887755332 0000000
Q ss_pred C-CCCC--------CCccceEeeec---------------------cCCCeEEEEEeeCCCCceEEEEe----CC-CcEE
Q 035621 162 T-DDKN--------PDDLMLQKFVA---------------------HNDSVTAITCCIGSFNSIIISCS----MD-CTCK 206 (387)
Q Consensus 162 ~-~~~~--------~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~~~l~s~~----~d-~~i~ 206 (387)
. .... .-++.-..+.+ ..+.-++|.|.-+ |.++++.. .+ +.|+
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEeccCCceeEE
Confidence 0 0000 00000011110 1111234666544 68888732 23 7899
Q ss_pred EEeCCCCcEEEEE-ecCCceeEEEeCCCCCeEEEE---ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEe
Q 035621 207 FWRLLNGTHLSTV-TFPCAIMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM 282 (387)
Q Consensus 207 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (387)
+||-+ |..-..- +....-.+++|-|.|..+++- ++|+.|.+|..+.-..... ..........|..++|+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f------~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF------VLPFPLDEKEVEELAWN 298 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc------ccCCcccccchheeeec
Confidence 99976 4322211 133455689999999998886 3466788887654221111 10111233448999999
Q ss_pred cCCCEEEE---EeCCCcEEEEECCCc
Q 035621 283 NEGKNLVS---AAEDGSVYIWEIEKR 305 (387)
Q Consensus 283 ~~~~~l~s---~~~dg~i~iwd~~~~ 305 (387)
.++..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999887 444555999998875
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=7.8e-05 Score=65.05 Aligned_cols=262 Identities=16% Similarity=0.130 Sum_probs=134.4
Q ss_pred cCCCcEEEee---------CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 5 LPCNEVILTS---------SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 5 s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
|||+++++.. +..+.+.|||+++++....... ...+....|+|++...+- ..++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~-----v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAF-----VRDNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEE-----EETTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEE-----EecCceEEEECCCCC
Confidence 7899888873 2347799999998776554433 667889999997665543 357889999886664
Q ss_pred cccccC-C-----------------CCCeeeEEeccCCCEEEEecCC-Cc------------------------------
Q 035621 76 PLHNIP-V-----------------PEPVAPLATTADGSYLFTGGLS-GN------------------------------ 106 (387)
Q Consensus 76 ~~~~~~-~-----------------~~~v~~~~~~~~~~~l~~~~~d-g~------------------------------ 106 (387)
..+.-. . -+.-..+-|+||+++|+....| ..
T Consensus 75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP 154 (353)
T ss_dssp EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence 332211 1 1223568899999988866433 22
Q ss_pred -----EEEEeCCCCceeE-E-c---cCCCCCeEEEEEcCCCCEEEEE--eCCCc---EEEEeCCcccccCCCCCCCCccc
Q 035621 107 -----VYAISVPKGDILR-S-F---SAHDKPVSCLKISPDGSLLISG--GDDGV---IATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 107 -----i~i~d~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~l~~~--~~dg~---i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
+.++|+.+++... . . ..-...+..+.|.++++.|+.. ..+.. +.+.|... .....
T Consensus 155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t----------g~~~~ 224 (353)
T PF00930_consen 155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST----------GETRV 224 (353)
T ss_dssp --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT----------TTCEE
T ss_pred CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC----------CceeE
Confidence 3334444443211 0 0 1223456778888887734333 23322 34444411 01111
Q ss_pred eEeeeccCCC---eEEEEEe-eCCCCceEEEEeCCCc--EEEEeCCCCcEEEEEe-cCCceeE-EEeCCCCCeEE-EEcc
Q 035621 172 LQKFVAHNDS---VTAITCC-IGSFNSIIISCSMDCT--CKFWRLLNGTHLSTVT-FPCAIMG-LALDPTETDFF-AAGS 242 (387)
Q Consensus 172 ~~~~~~~~~~---i~~~~~~-~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~-~~~~ 242 (387)
+. ....... -....+. +++ +.++.....||. |.+++...+. .+.+. ..-.|.. +.++++++.++ ++..
T Consensus 225 ~~-~e~~~~Wv~~~~~~~~~~~~~-~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 225 VL-EETSDGWVDVYDPPHFLGPDG-NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EE-EEESSSSSSSSSEEEE-TTTS-SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EE-EecCCcceeeecccccccCCC-CEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 11 1111121 2234443 443 456666667775 4455555554 33444 4455644 67888876655 4443
Q ss_pred C--CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 243 D--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 243 d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
+ +.-.+|.+.... +..+..+. ...+.-..+.|||++++++-.+
T Consensus 302 ~~p~~r~lY~v~~~~------~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 302 DNPGERHLYRVSLDS------GGEPKCLT-CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp GGTTSBEEEEEETTE------TTEEEESS-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCceEEEEEEeCC------CCCeEecc-CCCCCceEEEECCCCCEEEEEE
Confidence 2 333444433320 11222221 1111116899999999887543
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.53 E-value=2.9e-05 Score=68.54 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=126.9
Q ss_pred cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621 19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL 98 (387)
Q Consensus 19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 98 (387)
.+.+=|.. +...+.+......+..-.|+|+....+...........+.++++++++.......+..-...+|+|||+.|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 34444433 55555555455556667777755443322222222267999999999888888777788888999999887
Q ss_pred EEec-CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEeCCcccccCCCCCCCCccce
Q 035621 99 FTGG-LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGV--IATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 99 ~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
+... .|| .|.++|+..++..+ +..-.+.-..=.|+|||+.++-.+ ..|. |.+++. .+...
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------------~g~~~ 318 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------------EGSQV 318 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------------CCCce
Confidence 7654 455 57778887776433 443333333567999999776655 4555 444444 22222
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
..+......-..-.++|++ ++++..+. +|. |.+.|+.++...+.+........-.|.|+++.+...+..
T Consensus 319 ~riT~~~~~~~~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eEeeccCCCCcCccCCCCC--CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 3333332222256667775 66665553 344 677777776655555555556667788888877765543
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=5.6e-08 Score=85.18 Aligned_cols=188 Identities=15% Similarity=0.203 Sum_probs=124.4
Q ss_pred CcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcCccceeeeccccC----CCCCeEEEEEccCC--Ccccc
Q 035621 8 NEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPT----TGSGSVHLYNLWSS--TPLHN 79 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~d~~v~vw~~~~~--~~~~~ 79 (387)
..+++.|..+|.|.+-....... -....+|..+.++++|++- ..+.++.| -.|..+.|||+.++ .+...
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL---Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~ 146 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL---DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES 146 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccc---cHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence 35788999999999988764432 2234678888999999982 22333323 34678999999877 33322
Q ss_pred cC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 035621 80 IP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVP 153 (387)
Q Consensus 80 ~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 153 (387)
.. .......++|..+.+++.+|.....+.++|++.. .....+ .+..+..+...| .++++++-. ||.|.+||
T Consensus 147 ~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 147 PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeecc
Confidence 22 2245668889889999999998889999998733 222222 244567778888 677777655 99999999
Q ss_pred C-CcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 154 I-FQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 154 ~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
. ++. ..++..+.. ....+..++|+|...|.+.+..-..++|+.||+..
T Consensus 224 ~~rni-----------enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 224 TYRNI-----------ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred chhhh-----------ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4 221 112222111 12247889999998554444444568999999863
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00057 Score=58.32 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=120.9
Q ss_pred cccCCCcEEEeeC-CCC--cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 3 HHLPCNEVILTSS-PEG--PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 3 ~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
+|.+||+.|+.++ .|| .+++.|+.+++..+--.+.........++++.....- ......++-.|+++.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y----v~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY----VKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE----EETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE----EECCCeEEEEECCcCcEEEE
Confidence 5888997666554 344 5777889888876544432233334555664322211 12345788888888876665
Q ss_pred cCCCCCee-eEEec--cCCCEEEEec---CC-------------------CcEEEEeCCCCceeEEccCCCCCeEEEEEc
Q 035621 80 IPVPEPVA-PLATT--ADGSYLFTGG---LS-------------------GNVYAISVPKGDILRSFSAHDKPVSCLKIS 134 (387)
Q Consensus 80 ~~~~~~v~-~~~~~--~~~~~l~~~~---~d-------------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 134 (387)
+..++.-. ...|. .++..++-.- .+ ..|.-.|+.+|+....+. -...+..+.|+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs 196 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS 196 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence 65554332 34553 3455443221 11 135566777777655554 35678899999
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEE----eCCC
Q 035621 135 PDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISC----SMDC 203 (387)
Q Consensus 135 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~----~~d~ 203 (387)
|....+++=+..| .-+||-+.. .+.....+..+. ..+..=-|.|++ ..+..-+ +.+.
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~-----------dg~~~~~v~~~~~~e~~gHEfw~~DG-~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINT-----------DGSNVKKVHRRMEGESVGHEFWVPDG-STIWYDSYTPGGQDF 264 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEET-----------TS---EESS---TTEEEEEEEE-TTS-S-EEEEEEETTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEc-----------CCCcceeeecCCCCcccccccccCCC-CEEEEEeecCCCCce
Confidence 9554444433322 135665532 111122222221 122233455554 1222211 2244
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC----------------cEEEEeccccccccccccceeEe
Q 035621 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG----------------LIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
.|.-+|+.+++.......+ ....+--++||++++-=+.|. .|++++...+.............
T Consensus 265 ~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~ 343 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK 343 (386)
T ss_dssp EEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred EEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence 5777788887664433333 345666778888776544432 34556655432211110000001
Q ss_pred ecccccc-cEEEEEEecCCCEEE-EEeCCCcEEEEEC
Q 035621 268 LANRHDG-VVVSVMMMNEGKNLV-SAAEDGSVYIWEI 302 (387)
Q Consensus 268 ~~~~~~~-~v~~~~~s~~~~~l~-s~~~dg~i~iwd~ 302 (387)
...++.. .=....|+|||++++ ++...|...||-+
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1111111 124578999999766 5556777776644
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.47 E-value=0.00059 Score=60.51 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=142.9
Q ss_pred ccccCCCcEEEeeCCC----------C-cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621 2 LHHLPCNEVILTSSPE----------G-PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN 70 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~ 70 (387)
++.+|.|..+|....+ . .|.||+. +|+.+.++.-..+.+.++.|..+..+.. ...||.++++|
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lvv-----V~~dG~v~vy~ 107 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVV-----VQSDGTVRVYD 107 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEE-----EEcCCEEEEEe
Confidence 4556777666665443 1 4899995 6777777654447899999988544433 46899999999
Q ss_pred ccCCCcccccCCC-----CC-----eeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEc---cC-----CCC-CeEE
Q 035621 71 LWSSTPLHNIPVP-----EP-----VAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSF---SA-----HDK-PVSC 130 (387)
Q Consensus 71 ~~~~~~~~~~~~~-----~~-----v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-----~~~-~v~~ 130 (387)
+. |+. .+... .. +....+..+|-.++ ..++.+.+.+--... ..+.+ .. +.. ....
T Consensus 108 ~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 182 (410)
T PF04841_consen 108 LF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV 182 (410)
T ss_pred CC-Cce--eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence 85 333 22211 12 22223333553333 344555444322211 11111 10 000 0001
Q ss_pred -EEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621 131 -LKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR 209 (387)
Q Consensus 131 -~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd 209 (387)
..++.+....+....++.+.+.+-. .. ..+ ...+++..++++|++ ++++.-..+|.+.+.+
T Consensus 183 i~~l~~~~~~~i~~~~g~~i~~i~~~------------~~---~~i-~~~~~i~~iavSpng--~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 183 IPLLSSDRVVEILLANGETIYIIDEN------------SF---KQI-DSDGPIIKIAVSPNG--KFIALFTDSGNLWVVS 244 (410)
T ss_pred ceEeecCcceEEEEecCCEEEEEEcc------------cc---ccc-cCCCCeEEEEECCCC--CEEEEEECCCCEEEEE
Confidence 2234444445555555555544321 00 011 124689999999985 8899888999999998
Q ss_pred CCCCcEEEEEecC--CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621 210 LLNGTHLSTVTFP--CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 210 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
..-.+.+..+... ..+..+.|.-++..++.- ...+.+.. .... .+.|..++..
T Consensus 245 sDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg--------------------~~~~---~~~~~~~~~~ 299 (410)
T PF04841_consen 245 SDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG--------------------PDGD---SISFWYDGPV 299 (410)
T ss_pred CcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC--------------------CCCC---ceEEeccCce
Confidence 7666666666644 566777776553322222 22232221 1122 2345445556
Q ss_pred EEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 288 LVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
++..-.|| +||..-+.-+.++.++..
T Consensus 300 ~l~~E~DG-~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 300 ILVSEIDG-VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred EEeccCCc-eEEEeCCceEEEEECCHH
Confidence 66666777 999988888888887643
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00013 Score=60.95 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=135.9
Q ss_pred cccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCCe
Q 035621 3 HHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSGS 65 (387)
Q Consensus 3 ~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~~ 65 (387)
..|||++.+++++ ..-.|.+||.++-....++.-... ....++++.++.+..-+- .+-...
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N--~TPa~S 119 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN--FTPATS 119 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE--ESSSEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc--cCCCCe
Confidence 4689999888743 344699999999887775532221 123344554333322111 234456
Q ss_pred EEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEE----ccCCCCCe-EEEEEcCCCCE
Q 035621 66 VHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRS----FSAHDKPV-SCLKISPDGSL 139 (387)
Q Consensus 66 v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~----~~~~~~~v-~~~~~~~~~~~ 139 (387)
|.|-|+..++.+..+..++...-.-..+ .-+.+-+.||.+.-..+. .|+...+ |.....++ ..-++...+..
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 7777777777777666655433333322 346677789999888886 5554422 21222222 23344445555
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEEe--CC-----
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISCS--MD----- 202 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~--~d----- 202 (387)
++-.+.+|.|+-.|+... .......+.. ..+.-.-+++++.. +++++.-. .+
T Consensus 198 ~~F~Sy~G~v~~~dlsg~----------~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGD----------SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EEEEBTTSEEEEEEETTS----------SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS
T ss_pred EEEEecCCEEEEEeccCC----------cccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccC
Confidence 666788899888887321 1111111110 01223335555543 23322211 11
Q ss_pred --CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEE-ccCCcEEEEeccccc
Q 035621 203 --CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAA-GSDGLIYKGLLKYQS 255 (387)
Q Consensus 203 --~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~ 255 (387)
..|.++|+.+++.+.++..+.++.+++.+.+.+ +|++. ..++.+.+||..++.
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 158899999999999999888899999999876 55444 458999999999854
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=8e-06 Score=71.73 Aligned_cols=87 Identities=17% Similarity=0.331 Sum_probs=69.2
Q ss_pred EEEEccCCCc----ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 67 HLYNLWSSTP----LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 67 ~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
.+|++..++. +..++.+..+.+++++|+...++.|+.||.|.+||...+.. .+....-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEE
Confidence 4566654432 22445778999999999999999999999999999865532 22234556789999999999999
Q ss_pred EeCCCcEEEEeCC
Q 035621 143 GGDDGVIATVPIF 155 (387)
Q Consensus 143 ~~~dg~i~iwd~~ 155 (387)
|+..|.+.+||+.
T Consensus 317 ~s~qGelQ~FD~A 329 (545)
T PF11768_consen 317 GSEQGELQCFDMA 329 (545)
T ss_pred EcCCceEEEEEee
Confidence 9999999999983
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=0.00039 Score=61.46 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=71.7
Q ss_pred EEEeCCCCcE----EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 206 KFWRLLNGTH----LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 206 ~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
.+|+....+. +.+++.+..+.+++++|+...++.|+.||.|.+||...+.. .. ....-.++.++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----------~~-~ka~~~P~~iaW 307 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----------LL-AKAEFIPTLIAW 307 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----------ee-eeecccceEEEE
Confidence 4566654432 34455789999999999999999999999999999876321 11 123456789999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 282 MNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 282 s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
+|+|.++++|+.-|.+.+||+.-.-.-
T Consensus 308 Hp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 308 HPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCCcEEEEEcCCceEEEEEeecCccc
Confidence 999999999999999999998765443
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.42 E-value=2.3e-05 Score=73.25 Aligned_cols=145 Identities=12% Similarity=0.170 Sum_probs=99.3
Q ss_pred CcEEEee-CCCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCC--cc----c
Q 035621 8 NEVILTS-SPEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSST--PL----H 78 (387)
Q Consensus 8 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~--~~----~ 78 (387)
.++|+.. .....|+-.|+++|+.+.++..|... |..++-..+ ..+....-+.|-.++.+..||.+-.. .+ +
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 35578999999999999999887754 554443211 11112223336678899999986532 22 1
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
.+.......|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++.+. ..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 22344567888887777 7999999999999995333334456677889999999999999887765 56777776
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.41 E-value=0.00023 Score=61.30 Aligned_cols=217 Identities=16% Similarity=0.201 Sum_probs=121.5
Q ss_pred eEEEEEccCCCcccccC--CCCCeeeEEe---ccC----CCEEEEecC----------CCcEEEEeCCCC----ceeEEc
Q 035621 65 SVHLYNLWSSTPLHNIP--VPEPVAPLAT---TAD----GSYLFTGGL----------SGNVYAISVPKG----DILRSF 121 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~--~~~~v~~~~~---~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~~ 121 (387)
.|++.|..+.+.+..+. ..+.+.+++. ..+ ..++++|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777777776665555 3344555443 322 467777752 288999999874 122222
Q ss_pred --cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe--eeccCCCeEEEEEeeCCCCceEE
Q 035621 122 --SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK--FVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 122 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
....++|++++-- ++. |+++. .+.|.+|++.. ...+.. .......+.++... +++++
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~------------~~~l~~~~~~~~~~~i~sl~~~----~~~I~ 143 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDN------------SKTLLKKAFYDSPFYITSLSVF----KNYIL 143 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEET------------TSSEEEEEEE-BSSSEEEEEEE----TTEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccC------------cccchhhheecceEEEEEEecc----ccEEE
Confidence 2347889998865 444 44433 47899999832 221222 22233356666554 36889
Q ss_pred EEeCCCcEEEEeCCC-CcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec-ccc
Q 035621 198 SCSMDCTCKFWRLLN-GTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRH 272 (387)
Q Consensus 198 s~~~d~~i~iwd~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~ 272 (387)
.|.....+.++..+. ...+..+. .+..++++.+-++++.++++..+|.+.++...............+.... -..
T Consensus 144 vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l 223 (321)
T PF03178_consen 144 VGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL 223 (321)
T ss_dssp EEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred EEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence 998888888875543 33233333 4567888988877779999999999999988753222211110121111 123
Q ss_pred cccEEEE---EEecC--CC------EEEEEeCCCcEEEE
Q 035621 273 DGVVVSV---MMMNE--GK------NLVSAAEDGSVYIW 300 (387)
Q Consensus 273 ~~~v~~~---~~s~~--~~------~l~s~~~dg~i~iw 300 (387)
...|+++ ++.|. +. .++.++.+|.|...
T Consensus 224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4567777 44441 22 47778889888743
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=0.00014 Score=69.35 Aligned_cols=232 Identities=14% Similarity=0.159 Sum_probs=135.0
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc----cCCCcc-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL----WSSTPL- 77 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~----~~~~~~- 77 (387)
.|..+++-++.+...|.|.+-|.++..... ...-...|.+++|+|+..+.+- .+..+++.+-.- -..+++
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~l----iT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLAL----ITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEE----EeCCcEEEEEeccccchhccccc
Confidence 455677778888889999999987765422 2224556999999998766543 344445443321 000111
Q ss_pred ------------------cccC----------------------CCCCeeeEEeccCCCEEEEe-----cCCCcEEEEeC
Q 035621 78 ------------------HNIP----------------------VPEPVAPLATTADGSYLFTG-----GLSGNVYAISV 112 (387)
Q Consensus 78 ------------------~~~~----------------------~~~~v~~~~~~~~~~~l~~~-----~~dg~i~i~d~ 112 (387)
..+. ..+.=..+.|--||+++++. .....|++||-
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 0111 00112348899999999883 23378999997
Q ss_pred CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
+ |.+-..-....+--.+++|-|.|..+++-. .|+.|.+|.-..+ ..+.....+.....++..++|+.
T Consensus 230 E-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL---------~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 230 E-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL---------RHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred c-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc---------cccccccCCcccccchheeeecC
Confidence 5 544333233334456899999999888764 4556888864221 12222223344445588999987
Q ss_pred CCCCceEEE---EeCCCcEEEEeCCCCc--EEEEEecCCceeEEEeCCCC-CeEEEEccCCcEEEEecc
Q 035621 190 GSFNSIIIS---CSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 190 ~~~~~~l~s---~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~ 252 (387)
++ .+|+. ......|++|-+.+-. ....+..+.... +.|+|.. ..+.+-..+|...++++.
T Consensus 300 ~s--diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 300 NS--DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CC--CceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence 75 77776 4445559999887643 222233332222 6677643 233333355555555443
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.38 E-value=7.7e-05 Score=60.49 Aligned_cols=203 Identities=14% Similarity=0.189 Sum_probs=119.0
Q ss_pred eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
.+.+-...+.+++|+|+... .+++....+.|..++. +|+.++.+... +..-.+++..++.++++--.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t---LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT---LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE---EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCe---EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 45566667999999985321 2223677888888886 57777777644 568889998888877777678999999
Q ss_pred eCCCCc------eeEEcc-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe-----
Q 035621 111 SVPKGD------ILRSFS-----AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK----- 174 (387)
Q Consensus 111 d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----- 174 (387)
++.... ....+. .++..+-.++|+|.++.|+.+-+..-..+|.+..... ........
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-------~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-------GFDLFVSDDQDLD 164 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------SS--EEEE-HHHH
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-------ccceeeccccccc
Confidence 883321 111121 3456789999999888888887777777776632110 00101111
Q ss_pred -eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC----------ceeEEEeCCCCCeEEEEccC
Q 035621 175 -FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC----------AIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 175 -~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~d 243 (387)
.......+.+++++|.. +.+++....+..|..+| .+|+.+..+.... +.-.++|.++|++.+++ .-
T Consensus 165 ~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-Ep 241 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EP 241 (248)
T ss_dssp -HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TT
T ss_pred cccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CC
Confidence 11233457889998875 67888888899999999 7788877776332 57889999998655554 44
Q ss_pred CcEEEE
Q 035621 244 GLIYKG 249 (387)
Q Consensus 244 g~i~i~ 249 (387)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 455443
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.37 E-value=0.00075 Score=56.79 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=126.0
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH---- 78 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~---- 78 (387)
+-...++.|+.|+.+| +++++........... +..+|..+...++...+. .-.|+.+.++++..-....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~ll-----vLsd~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLL-----VLSDGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEE-----EEcCCccEEEEchhhcccccccc
Confidence 3445678899999888 9999983332222222 233388898888433322 1246999999987654443
Q ss_pred -----------ccCCCCCeeeEE--eccCC-CEEEEecCCCcEEEEeCCCC-----ceeEEccCCCCCeEEEEEcCCCCE
Q 035621 79 -----------NIPVPEPVAPLA--TTADG-SYLFTGGLSGNVYAISVPKG-----DILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 79 -----------~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
.+.....+..++ -...+ ..|+++ ....|.+|..... +..+.+. -...+.+++|. ++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 122223444444 11233 344444 4558888887553 3444544 34778999998 556
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-- 217 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-- 217 (387)
++.|..++ ..+.|+.+........................++..+... ++.+|++- |..-.+.| ..|+..+
T Consensus 151 i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~Ll~~--~~~g~fv~-~~G~~~r~~ 223 (275)
T PF00780_consen 151 ICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---DNEFLLCY--DNIGVFVN-KNGEPSRKS 223 (275)
T ss_pred EEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---CceEEEEe--cceEEEEc-CCCCcCccc
Confidence 77777654 6778884211110000000000000011112233333322 23555542 33333444 3454443
Q ss_pred EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
.+.....+.++++. ..++++.+.+ .|.+|++.++...
T Consensus 224 ~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 224 TIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred EEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEE
Confidence 55566777777774 3577776665 4999999985433
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.8e-07 Score=82.09 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=124.2
Q ss_pred CeeeEEeccC--CCEEEEecCCCcEEEEeCCCCcee--EEccCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEEEeCC
Q 035621 85 PVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDIL--RSFSAHDKPVSCLKISP-DGSLLISGG----DDGVIATVPIF 155 (387)
Q Consensus 85 ~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd~~ 155 (387)
.+.|+++.-+ ...+++|..+|.|.+-..+...-. ....++..+.++++|++ |.+.|+.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4566665543 347888999999999887654322 33456788899999998 566777663 35679999995
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC-CC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP-TE 234 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~ 234 (387)
..... +.......- +......+++|..+ .+++.+|.....++++|++........-....+..+...| .+
T Consensus 138 s~ltv------Pke~~~fs~-~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 138 SLLTV------PKESPLFSS-STLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred cccCC------Ccccccccc-ccccCccccccccC--cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC
Confidence 54221 111111111 12334456766643 5889999999999999998432211111233566777888 55
Q ss_pred CeEEEEccCCcEEEEec-cccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe-CCCcEEEEECC
Q 035621 235 TDFFAAGSDGLIYKGLL-KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA-EDGSVYIWEIE 303 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~ 303 (387)
+++++.. ||.|.+||. +.-+... ..+..-.+.-...+..++|+|... .+++.. ..++|+++|+.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl----~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPL----QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHH----HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6666555 999999993 3211100 001111111223588999998643 444444 45789999875
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.00029 Score=60.68 Aligned_cols=214 Identities=17% Similarity=0.234 Sum_probs=122.3
Q ss_pred CcEEEEeCCCCceeEeccCCCC-CceeEE---EcC-----ccce-eeeccccCC----CCCeEEEEEccCC-------Cc
Q 035621 18 GPITAYNPSSGAILAHFSGSRS-PRRGLT---FAG-----KPFI-AASHISPTT----GSGSVHLYNLWSS-------TP 76 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~-~v~~~~---~~~-----~~~~-~~~~~~~~~----~d~~v~vw~~~~~-------~~ 76 (387)
..|++.|..+.+.+.++.-... .+.+++ +.. ...+ .++.+..+. ..|.+.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588889888877766543222 244443 332 1111 122221121 2299999999884 22
Q ss_pred ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 77 LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
+.....+++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++... +++++.|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2333467889988877 34 455443 4789999998777 433222 122356666554 569999999899988855
Q ss_pred CcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-------Cc----EEEEEec
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-------GT----HLSTVTF 221 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~----~~~~~~~ 221 (387)
.. ....+..+. .....++++.+.++. +.++.+..+|.+.++.... +. ....+..
T Consensus 157 ~~-----------~~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l 223 (321)
T PF03178_consen 157 DE-----------ENNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL 223 (321)
T ss_dssp ET-----------TTE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred Ec-----------cCCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence 21 111122222 234457777777665 4899999999999998762 22 3344556
Q ss_pred CCceeEE---EeCCC--CC------eEEEEccCCcEEEE
Q 035621 222 PCAIMGL---ALDPT--ET------DFFAAGSDGLIYKG 249 (387)
Q Consensus 222 ~~~v~~~---~~~~~--~~------~l~~~~~dg~i~i~ 249 (387)
+..|+++ ++.|. +. .++.++.+|.|...
T Consensus 224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 7888888 66662 22 38888889998844
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.0014 Score=55.21 Aligned_cols=222 Identities=14% Similarity=0.144 Sum_probs=127.7
Q ss_pred ccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 4 HLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 4 ~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
|.|+.. ++.+--..+.|.-|+..+++.. .+...............+.+.+ .+.-+.+++.+++..+..+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~-------~~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIA-------CEHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEE-------EccccEEEeccCCceeEEecc
Confidence 555555 4555556678888888766432 2221222122233344444433 23446666765554422221
Q ss_pred -----CCCCeeeEEeccCCCEEEEecC-----------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 82 -----VPEPVAPLATTADGSYLFTGGL-----------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 82 -----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
.....+.....|+|.+-+.... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1245678888999876665433 133555554 56666666665666789999999987777765
Q ss_pred C-CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecC-
Q 035621 146 D-GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFP- 222 (387)
Q Consensus 146 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~- 222 (387)
. +.|.-|++.. ... .. ........+....+..-.++...+ +.+.+++..+| .|..|+.. ++.+..+..+
T Consensus 183 ~~~~i~r~~~d~-~~g---~~-~~~~~~~~~~~~~G~PDG~~vDad--G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 183 PANRIHRYDLDP-ATG---PI-GGRRGFVDFDEEPGLPDGMAVDAD--GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred CCCeEEEEecCc-ccC---cc-CCcceEEEccCCCCCCCceEEeCC--CCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 4 7787777732 000 00 011112222223444455555444 46665555554 89999988 9999999977
Q ss_pred CceeEEEeC-CCCCeEEEEcc
Q 035621 223 CAIMGLALD-PTETDFFAAGS 242 (387)
Q Consensus 223 ~~v~~~~~~-~~~~~l~~~~~ 242 (387)
..+++++|- |+.+.|++.+.
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCccceEeCCCcCEEEEEec
Confidence 778888886 44555555443
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0012 Score=58.20 Aligned_cols=200 Identities=17% Similarity=0.163 Sum_probs=134.8
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCCce
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKGDI 117 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~ 117 (387)
...+++++.... ..+....++.|.+.|..+.+.............++++++++.+.++.. ++.+.+.|..+.+.
T Consensus 76 p~~i~v~~~~~~---vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNK---VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCe---EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345666653221 122245578999999888877777776668889999999988887765 68999999998888
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
+.....-..+ ..++++|+++.++... .++.|.+.|....... . .......... ..-..+.+.+++ .++
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------~-~~~~~~~~~~-~~P~~i~v~~~g--~~~ 221 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------R-GSVGSLVGVG-TGPAGIAVDPDG--NRV 221 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------c-cccccccccC-CCCceEEECCCC--CEE
Confidence 8875543344 8999999999666665 7888999986221000 0 0000011112 223457777775 433
Q ss_pred E-EEeCC--CcEEEEeCCCCcEEEE-EecCC-ceeEEEeCCCCCeEEEEcc-CCcEEEEecccc
Q 035621 197 I-SCSMD--CTCKFWRLLNGTHLST-VTFPC-AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQ 254 (387)
Q Consensus 197 ~-s~~~d--~~i~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 254 (387)
. +...+ +.+...|..++..... ..... ....+..+|+|+.+.+... .+.+.+.|....
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 3 33333 6899999988877665 33223 5778999999999998855 588998888763
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.27 E-value=0.00087 Score=56.40 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=90.4
Q ss_pred cCCCEEEEecCCCcEEEEeCCC-CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC--CCCc
Q 035621 93 ADGSYLFTGGLSGNVYAISVPK-GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK--NPDD 169 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~ 169 (387)
..++.|+.|+.+| +.+++... ....... +...|..+...|+-+.+++-+ |+.+.++++........... ....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899998888 99999833 3333322 233499999999877666664 49999999965543321100 0000
Q ss_pred cceEeeeccCCCeEEEE-EeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621 170 LMLQKFVAHNDSVTAIT-CCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVTFPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 170 ~~~~~~~~~~~~i~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
............+...+ ..... +...+......+|.+|..... +..+.+..+..+..++|. ++.+++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 00000111222333333 11222 233333444568888887653 567778889999999998 5667777644
Q ss_pred CcEEEEecccc
Q 035621 244 GLIYKGLLKYQ 254 (387)
Q Consensus 244 g~i~i~d~~~~ 254 (387)
+ ..+.|+.++
T Consensus 158 ~-f~~idl~~~ 167 (275)
T PF00780_consen 158 G-FYLIDLNTG 167 (275)
T ss_pred c-eEEEecCCC
Confidence 3 666676643
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00088 Score=59.55 Aligned_cols=142 Identities=11% Similarity=0.009 Sum_probs=82.1
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
..+..+.++|+|++++++ .+|.-.+|.....+... .+.-...+|.+.+ .+++-...+.|.++.-.+
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~------- 98 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK------- 98 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE-------
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc-------
Confidence 457889999999999885 57888888743333322 2334567898854 466677788899963311
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
......+... ..+..|- . |.+|...+.+ .|.+||+.+++.++++..+. |..+.|++++.+++..+.+
T Consensus 99 -----~~~~k~i~~~-~~~~~If--~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 99 -----NEVVKSIKLP-FSVEKIF--G---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -----E-TT-----S-S-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-
T ss_pred -----cccceEEcCC-cccceEE--c---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC
Confidence 1111122111 1233332 2 3677766554 89999999999999998664 8999999999999998755
Q ss_pred CcEEEEeccc
Q 035621 244 GLIYKGLLKY 253 (387)
Q Consensus 244 g~i~i~d~~~ 253 (387)
.+++++.+.
T Consensus 166 -~i~il~~~~ 174 (443)
T PF04053_consen 166 -SIYILKYNL 174 (443)
T ss_dssp -SEEEEEE-H
T ss_pred -eEEEEEecc
Confidence 777777655
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.23 E-value=0.0029 Score=58.14 Aligned_cols=148 Identities=10% Similarity=0.126 Sum_probs=87.8
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCC--CC--Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGS--RS--PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP 83 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~ 83 (387)
..++.++.|+.+.-.|.++|+.+...... .. .+.+ -....+..+....-.-.+.+|.|..+|.++|+.+..+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 46777888999999999999998766421 10 1111 1111122222110000123789999999999877654411
Q ss_pred --C------------------------------Ce-eeEEeccCCCEEEEecCC-----C-----------cEEEEeCCC
Q 035621 84 --E------------------------------PV-APLATTADGSYLFTGGLS-----G-----------NVYAISVPK 114 (387)
Q Consensus 84 --~------------------------------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~ 114 (387)
. .+ ..+++.+...+++.+..+ + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 0 01 124666666677766522 2 577889999
Q ss_pred CceeEEccCCCCCe---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCc
Q 035621 115 GDILRSFSAHDKPV---------SCLKISPDGS---LLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 115 ~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 156 (387)
|+....++.....+ .-+....+|+ .++.+..+|.+.+.|-..
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 99887766422211 2222334665 778899999999999854
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0033 Score=55.41 Aligned_cols=267 Identities=17% Similarity=0.177 Sum_probs=166.5
Q ss_pred EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEE
Q 035621 20 ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYL 98 (387)
Q Consensus 20 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 98 (387)
+.+++..+......+..+. ....+...+...-. +++....+ .+...+............. .....+++++.+..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~--~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQV--YVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEE--EEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeE
Confidence 7777776666655554333 34455665533111 01112222 4444444322111112222 345677888888755
Q ss_pred EE-ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 99 FT-GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 99 ~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+. ...++.|.+.|..+.+.......-. ....++++|+++.+.++.. ++.+.+.|- ........
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~------------~t~~~~~~ 155 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDA------------ATNKVTAT 155 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeC------------CCCeEEEE
Confidence 44 4456889999988777776664322 6678999999987777765 577777776 44445555
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-----EEecCCceeEEEeCCCCCeEEEEccC---CcE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-----TVTFPCAIMGLALDPTETDFFAAGSD---GLI 246 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i 246 (387)
...-..+ ..+++.|++ ...+++-..++.|.+.|.......+ .+........+.++|+|..+.+.... +.+
T Consensus 156 ~~vG~~P-~~~a~~p~g-~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 156 IPVGNTP-TGVAVDPDG-NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EecCCCc-ceEEECCCC-CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 4443345 778888886 2344455578999999977666553 23344566789999999977776553 588
Q ss_pred EEEeccccccccccccceeEe-ecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccEEEEeecc
Q 035621 247 YKGLLKYQSRQQMHKGQELVT-LANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 247 ~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
...|...... ... ...+-. ....+.++|+|+++.+.. ..+.+.+-|..+.+....+...
T Consensus 234 ~~id~~~~~v--------~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 234 LKIDTATGNV--------TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEeCCCceE--------EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 8888776322 111 111112 456788999999888774 4588999999998888876543
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.18 E-value=0.00028 Score=61.73 Aligned_cols=264 Identities=12% Similarity=0.142 Sum_probs=127.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---C---
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS---T--- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~---~--- 75 (387)
++|+++..-|++|...|.|.||.....+... .....+-....+.+ . ...++.-.+-|+... .
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE--------------------S------------GGGSS-SEEE-GGG--TT-SE
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c------cccCCCcceEEehhhCCccccc
Confidence 4678888889999999999999875433221 00011111111111 0 001111222233211 1
Q ss_pred ---cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--ccC------CCCCeEEEEEcC-----CC-
Q 035621 76 ---PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FSA------HDKPVSCLKISP-----DG- 137 (387)
Q Consensus 76 ---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~- 137 (387)
+...+. ..++|++++.+.- .++++|..+|.+.|.|++....+.. +.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 111111 2578999999754 4899999999999999988877654 222 234688888862 33
Q ss_pred --CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC--------------------Cce
Q 035621 138 --SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF--------------------NSI 195 (387)
Q Consensus 138 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~~~ 195 (387)
-.+++|...|.+.+|.+.-..... ..-........+.++|..+..-.... ..+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~-----f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGR-----FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG------EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCc-----eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 378999999999999883100000 00011111124556666665332110 114
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEec-CCceeEEEeC-----CCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621 196 IISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALD-----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
++.+ .+..++++...+.+....... +.....+++- ..+..|++-..+|.|+++.+..- .++....
T Consensus 229 vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--------kei~~~~ 299 (395)
T PF08596_consen 229 VVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--------KEIKSVS 299 (395)
T ss_dssp EEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEEEE
T ss_pred EEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--------hHhhccc
Confidence 4444 467799999988876655442 1233344442 35667788889999999998762 2222211
Q ss_pred ---ccccccEEEEEEecCCCEEEEEe
Q 035621 270 ---NRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 270 ---~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
..+...+....++++|..++-.+
T Consensus 300 l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp -SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred CCCccccccccccEECCCCCEEEEeC
Confidence 11223344566677777665544
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.0015 Score=58.00 Aligned_cols=197 Identities=11% Similarity=0.121 Sum_probs=108.3
Q ss_pred cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621 106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 185 (387)
.|.+|+. .|+++.++.-..+.+.++.|+.+. .|++...||.+++||+.... .. ..+..+.........+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~f-----sl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QF-----SLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-ee-----chhhhccccCccccccccc
Confidence 4899985 677777765444899999999754 56677799999999984221 00 0011111111111112222
Q ss_pred EEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCC---------ceeE-EEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPC---------AIMG-LALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~---------~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
.+..+ |-.+++ .++.+.+.+-.... ..+.+. .+. .... ..++.+....+....++.+++.+-..
T Consensus 134 ~~~~~--GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYKN--GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccCCC--CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 21111 222222 33444333221111 111111 111 0111 23444444444444455555443322
Q ss_pred cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
. .. . ...+++..++.||+++++|.-..+|.+.+...+-.+.+..+.......+..|.+...
T Consensus 210 ~--------~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 210 F--------KQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c--------cc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 0 00 1 234689999999999999999999999999988888888887765667778877643
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.004 Score=54.67 Aligned_cols=208 Identities=16% Similarity=0.157 Sum_probs=115.1
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-------------------------------------------eeEEc
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-------------------------------------------ILRSF 121 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------------------------------------~~~~~ 121 (387)
.|+.+.|.++...|++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888999998899999999999888652111 11112
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--------eccCCCeEEEEEee---C
Q 035621 122 SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--------VAHNDSVTAITCCI---G 190 (387)
Q Consensus 122 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~---~ 190 (387)
....++|++++.+. =-+++.|..+|.+.+.|+|.. ..+..- ......++++.|.. .
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGP------------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGP------------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTT------------EEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCC------------eEEeeccccccccccccccCeeEEEEEEEecC
Confidence 23468899999974 448999999999999999542 222221 11234577777752 2
Q ss_pred CCC---ceEEEEeCCCcEEEEeCCC---CcEE----EEE-ecCCceeEEE-eCCC--------------------CCeEE
Q 035621 191 SFN---SIIISCSMDCTCKFWRLLN---GTHL----STV-TFPCAIMGLA-LDPT--------------------ETDFF 238 (387)
Q Consensus 191 ~~~---~~l~s~~~d~~i~iwd~~~---~~~~----~~~-~~~~~v~~~~-~~~~--------------------~~~l~ 238 (387)
.++ -.+++|...|.+.+|.+.- +.-. ... .+...+..+. ++.+ -+.++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 222 4688889999999998751 1111 111 2344444443 3211 12345
Q ss_pred EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE-----ecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM-----MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
+...+..++++....... ..... ...-....+.+ ...+..|++-..+|.|+++.+..-+.+..++-
T Consensus 230 VvvSe~~irv~~~~~~k~--------~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKG--------AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEE-SSEEEEE-TT---E--------EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EEEcccceEEEeCCCCcc--------cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 555577788887765322 22211 11122233344 23566788889999999999999998888775
Q ss_pred c
Q 035621 314 E 314 (387)
Q Consensus 314 ~ 314 (387)
.
T Consensus 301 ~ 301 (395)
T PF08596_consen 301 P 301 (395)
T ss_dssp S
T ss_pred C
Confidence 3
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.08 E-value=0.0011 Score=45.69 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=72.2
Q ss_pred eEEEEEeeC-CC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 182 VTAITCCIG-SF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 182 i~~~~~~~~-~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
|++++++.- ++ .+.|+.|+.|..|++|+ ..+.+..+.....|++++-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc------
Confidence 566776652 22 26899999999999997 4577888888899999988877 6688899999999997643
Q ss_pred cccceeEeecccccccEEEEEEec-CC---CEEEEEeCCCcEE
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMN-EG---KNLVSAAEDGSVY 298 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~s~~~dg~i~ 298 (387)
.+-.. .....++++++.. ++ .-|++|-.+|.|-
T Consensus 73 ----RlWRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ----RLWRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----eeeee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 12222 1233366666543 22 2688888888764
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.04 E-value=0.0086 Score=53.76 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=124.6
Q ss_pred ccccCCCcEEEee-C----CCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCcc-ceeeeccccCCC------CCeEEE
Q 035621 2 LHHLPCNEVILTS-S----PEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKP-FIAASHISPTTG------SGSVHL 68 (387)
Q Consensus 2 l~~s~~~~~l~~~-~----~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~~~~------d~~v~v 68 (387)
+++||||+++|.+ + ....++++|+.+|+.+... ... ....+.|.++. .+....+-.... ...|..
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 4689999988864 2 2245999999999776532 211 12238999863 222222221222 556888
Q ss_pred EEccCCCcc--cccCCC--CC-eeeEEeccCCCEEEEecC---C-CcEEEEeCCCC----ceeEEccCCCCCeE-EEEEc
Q 035621 69 YNLWSSTPL--HNIPVP--EP-VAPLATTADGSYLFTGGL---S-GNVYAISVPKG----DILRSFSAHDKPVS-CLKIS 134 (387)
Q Consensus 69 w~~~~~~~~--~~~~~~--~~-v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~v~-~~~~~ 134 (387)
|.+.+.... ..+..+ .. ...+..++++++|+.... + ..+.+.++..+ .....+......+. .+...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 286 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH 286 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence 888666432 333322 22 567888999999876532 2 45888888764 22333333333333 34333
Q ss_pred CCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCc-cceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCC--cEE
Q 035621 135 PDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDD-LMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDC--TCK 206 (387)
Q Consensus 135 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~--~i~ 206 (387)
.+.+++... .++.|...++... .. .....+..+.. .+..+... . +.+++.-..++ .|+
T Consensus 287 -~~~~yi~Tn~~a~~~~l~~~~l~~~----------~~~~~~~~l~~~~~~~~l~~~~~~--~-~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 287 -GDRLYILTNDDAPNGRLVAVDLADP----------SPAEWWTVLIPEDEDVSLEDVSLF--K-DYLVLSYRENGSSRLR 352 (414)
T ss_dssp -TTEEEEEE-TT-TT-EEEEEETTST----------SGGGEEEEEE--SSSEEEEEEEEE--T-TEEEEEEEETTEEEEE
T ss_pred -CCEEEEeeCCCCCCcEEEEeccccc----------ccccceeEEcCCCCceeEEEEEEE--C-CEEEEEEEECCccEEE
Confidence 444444333 2355666666321 11 11224555555 34444443 2 24555555554 588
Q ss_pred EEeCCCCcEEEEEecC--CceeEEEeCCCCCeEEEEcc----CCcEEEEecccc
Q 035621 207 FWRLLNGTHLSTVTFP--CAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQ 254 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~ 254 (387)
++++..+.....+..+ +.+..+...++++.+...-. -+.++.||+.++
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9998855555555533 44566666666655444322 456777777764
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.005 Score=50.13 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=108.2
Q ss_pred CCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 84 EPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 84 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
..+..++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++......
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~- 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS- 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc-
Confidence 4599999999765 5556667788888886 57888776532 356889999888877777767899999888321110
Q ss_pred CCCCCCCccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC---CcEEEEEe---------cCCc
Q 035621 162 TDDKNPDDLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN---GTHLSTVT---------FPCA 224 (387)
Q Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~---------~~~~ 224 (387)
........+ ..++..+-.++|.+.. +.|+.+-...-..+|.+.. ...+.... .-..
T Consensus 100 -----~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 100 -----LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp -------EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred -----cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 000111111 1355678999999875 4455555555566666653 22222211 2245
Q ss_pred eeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccc------cccEEEEEEecCCCEEEEEeCCCcE
Q 035621 225 IMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH------DGVVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 225 v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
+.+++++|... +++.+..+..+..+|.... .. ....+..+. -...-.|+|.++|++.+++ +-+..
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-~~------~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGR-VV------SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT---EE------EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCC-EE------EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 78899999764 4555666788888885431 11 111111111 1346789999999766665 55555
Q ss_pred EEE
Q 035621 298 YIW 300 (387)
Q Consensus 298 ~iw 300 (387)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00046 Score=64.87 Aligned_cols=144 Identities=10% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 95 GSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKP-VSCLKISP-----DGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 95 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
.++|+.- .....|+-.|++.|+.+..+..|... |..++-.. .....+.|-.+..+..||.|-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~---------- 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS---------- 562 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC----------
Confidence 3444433 34578999999999999999877644 55544321 1234677888889999999631
Q ss_pred CccceE---eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621 168 DDLMLQ---KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 168 ~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
..+.+. ..........|++-..+ .+||.|+.+|.||+||--..+....++ ...+|..+..+.||+++++.+..
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~---G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATTED---GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCceeeccccccccCCCceEEEecCC---ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 111111 01123345666665554 589999999999999943222222333 47899999999999999887754
Q ss_pred CcEEEEecc
Q 035621 244 GLIYKGLLK 252 (387)
Q Consensus 244 g~i~i~d~~ 252 (387)
.+.+++..
T Consensus 640 -yLlLi~t~ 647 (794)
T PF08553_consen 640 -YLLLIDTL 647 (794)
T ss_pred -eEEEEEEe
Confidence 56666653
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.00092 Score=46.00 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=70.2
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 128 VSCLKISP---DG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 128 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
|++|++.. +| +.|++|+.|..|++|+- ...+.++. -.+.|.+++-... ..|+.+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--------------~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--------------DEIVAEIT-ETDKVTSLCSLGG---GRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--------------CcEEEEEe-cccceEEEEEcCC---CEEEEEecCC
Confidence 56666654 33 58999999999999954 34455554 3456777765544 6799999999
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEeCCCC----CeEEEEccCCcEE
Q 035621 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTE----TDFFAAGSDGLIY 247 (387)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~ 247 (387)
+|-+|+- ...+..++.+..+.++++..-. ..|++|-.+|.|-
T Consensus 64 TVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999975 4556666666667777665432 4688888888774
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0018 Score=57.35 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=88.7
Q ss_pred cccCCCcEEEee---CCC-CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCc
Q 035621 3 HHLPCNEVILTS---SPE-GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTP 76 (387)
Q Consensus 3 ~~s~~~~~l~~~---~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~ 76 (387)
+|+|++..++.- ... ..++++++.+++....+. ..+.-...+|+|++...+- +...|| .|.+.|+..+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f---~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAF---SSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEE---EECCCCCccEEEEcCCCCcc
Confidence 588888766554 222 459999999887655443 2223345678886544322 244455 466667776664
Q ss_pred ccccCCCCCeeeEEeccCCCEEEEecC-CC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-Cc--EE
Q 035621 77 LHNIPVPEPVAPLATTADGSYLFTGGL-SG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-GV--IA 150 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~ 150 (387)
.+.....+.-..-.|+|||+.++..+. .| .|.+++++.+.. ..+....+.-..-.|+|||++++..+.. |. |.
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence 442222333346789999999887653 33 677788766654 3333233322377899999988877753 44 44
Q ss_pred EEeC
Q 035621 151 TVPI 154 (387)
Q Consensus 151 iwd~ 154 (387)
+.|+
T Consensus 354 ~~~~ 357 (425)
T COG0823 354 KNDL 357 (425)
T ss_pred Eecc
Confidence 4443
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00012 Score=65.82 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred CceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc
Q 035621 193 NSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN 270 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 270 (387)
..+++.|+.-|.+++|+-..++....-. ....+..++.+++..++|+|+..|.|.++-++...... .........
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---~~~~t~~d~ 121 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---LDYVTPCDK 121 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc---ceeeccccc
Confidence 5899999999999999976665433222 34566778899999999999999999999887632111 111222233
Q ss_pred cccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 271 RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 271 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.|...|++++|++++..+.+|..-|.|..-.+++
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 4788999999999999999999999999988887
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.012 Score=49.72 Aligned_cols=227 Identities=14% Similarity=0.081 Sum_probs=123.7
Q ss_pred EeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621 90 ATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 90 ~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
.|.++...| .+--..+.|.-|+..+++.. .+.. .+.+.++..-..+..|+++.. | +.+++.... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~----------~ 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH-G-VRLLDPDTG----------G 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc-c-cEEEeccCC----------c
Confidence 466666644 44446778999998766532 2322 233344443333444444433 2 345554110 0
Q ss_pred c-cceEeee-c-cCCCeEEEEEeeCCCCceEEEEeC------C---CcEEEEeCC-CCcEEEEEec-CCceeEEEeCCCC
Q 035621 169 D-LMLQKFV-A-HNDSVTAITCCIGSFNSIIISCSM------D---CTCKFWRLL-NGTHLSTVTF-PCAIMGLALDPTE 234 (387)
Q Consensus 169 ~-~~~~~~~-~-~~~~i~~~~~~~~~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~ 234 (387)
. ..+.... + .....+.+.+.|++ .+.++... + ..-.+|-+. .+...+.+.. -...+.++||||+
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence 0 0011000 0 11233455555553 44443332 0 111344444 4555555443 4566889999999
Q ss_pred CeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-cEEEEECCCccEEEEee
Q 035621 235 TDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-SVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 235 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~ 312 (387)
+.++.+.. .+.|+.|++........ ............+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+.
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIG--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccC--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 88888765 58899888874111111 1121222223456777888888998886555554 89999988 99999988
Q ss_pred cccCCCceeEEEEecCCCceeeEEEe
Q 035621 313 NELAGSISEMVIATGIGGSRGCGVVK 338 (387)
Q Consensus 313 ~~~~~~v~~~~~~~~~~~~~~~~~~~ 338 (387)
... ..+++++|... +...+++..
T Consensus 252 lP~-~~~t~~~FgG~--~~~~L~iTs 274 (307)
T COG3386 252 LPV-KRPTNPAFGGP--DLNTLYITS 274 (307)
T ss_pred CCC-CCCccceEeCC--CcCEEEEEe
Confidence 764 47788877643 233444443
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.85 E-value=0.017 Score=50.60 Aligned_cols=254 Identities=14% Similarity=0.085 Sum_probs=131.1
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CC----------------C
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AH----------------D 125 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~----------------~ 125 (387)
.+.+.++|+++++..........+....|+|+|+.++... ++.|.+++..+++..+.-. +. -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4678999998876555444467899999999999999885 6789999987774432211 10 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCccccc-------------CCCCCC----------CCccc--eEee---e
Q 035621 126 KPVSCLKISPDGSLLISGGDD-GVIATVPIFQLVDE-------------HTDDKN----------PDDLM--LQKF---V 176 (387)
Q Consensus 126 ~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~-------------~~~~~~----------~~~~~--~~~~---~ 176 (387)
+.-..+-|+||+++|+....| ..+..+.+...... .....+ ..... +... .
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 123568899999988877644 44444433211111 000000 00000 0000 1
Q ss_pred ccCCCeEEEEEeeCCCCceEEE--EeCCC---cEEEEeCCCCcEEEEEe--cCCc---eeEEEeC-CCCC-eEEEEccCC
Q 035621 177 AHNDSVTAITCCIGSFNSIIIS--CSMDC---TCKFWRLLNGTHLSTVT--FPCA---IMGLALD-PTET-DFFAAGSDG 244 (387)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~s--~~~d~---~i~iwd~~~~~~~~~~~--~~~~---v~~~~~~-~~~~-~l~~~~~dg 244 (387)
.....+..+.|.+++ ..|+. ...+. .+.++|..++.....+. .+.. .....+. +++. ++.....+|
T Consensus 181 ~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp TSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred CCccCcccceecCCC--cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence 223456778888875 42332 23222 46677887766543333 2222 2345554 5554 445555677
Q ss_pred cEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEE-EEeCC----CcEEEEECCCccEEEEeecccCCC
Q 035621 245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLV-SAAED----GSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
.-+++-+.... .....+ ....-.|.. +.++++++.|. ++..+ ..|+.-++..+..+..+..... .
T Consensus 259 ~~hly~~~~~~-------~~~~~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~ 329 (353)
T PF00930_consen 259 YRHLYLYDLDG-------GKPRQL-TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-D 329 (353)
T ss_dssp SEEEEEEETTS-------SEEEES-S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-T
T ss_pred CcEEEEEcccc-------cceecc-ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-C
Confidence 66665554421 112222 233445644 67888877554 55442 2566666663344445543322 1
Q ss_pred ceeEEEEecC
Q 035621 319 ISEMVIATGI 328 (387)
Q Consensus 319 v~~~~~~~~~ 328 (387)
-..+.|+++.
T Consensus 330 ~~~~~~Spdg 339 (353)
T PF00930_consen 330 HYSASFSPDG 339 (353)
T ss_dssp TEEEEE-TTS
T ss_pred ceEEEECCCC
Confidence 2466666654
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=6.2e-05 Score=41.24 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=33.6
Q ss_pred ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 116 DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999995
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.84 E-value=0.032 Score=53.48 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=74.0
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC--------ceeEEEcCc------------cceeeeccccCCCCCeEE
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSP--------RRGLTFAGK------------PFIAASHISPTTGSGSVH 67 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~------------~~~~~~~~~~~~~d~~v~ 67 (387)
+..|+.++.++.|.-.|..||+.+-++...... .+.+++... .......++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888899999999999998877533211 223333221 011223455577899999
Q ss_pred EEEccCCCcccccCCCCCee-------------eEEecc--CCCEEEEecC----------CCcEEEEeCCCCceeEEcc
Q 035621 68 LYNLWSSTPLHNIPVPEPVA-------------PLATTA--DGSYLFTGGL----------SGNVYAISVPKGDILRSFS 122 (387)
Q Consensus 68 vw~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 122 (387)
-.|.++|+....+...+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999887665433221 111112 2345666642 5889999999999887764
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00011 Score=65.10 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=75.3
Q ss_pred cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee-EEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM-GLALDPTETDFFAAGSDGLIYKGLLKYQS 255 (387)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 255 (387)
-...+..+.|+|.. .++|.+..+|.|.+..+. .+.+.+++ +...++ +++|.|||+.|++|-.||+|++.|...+.
T Consensus 19 l~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 34567788999986 899999999999999988 88888888 555666 99999999999999999999999999854
Q ss_pred cccccccceeEeecccccccEEEEEEec
Q 035621 256 RQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
... .....-...|.++-|++
T Consensus 96 ~l~--------~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLV--------SFLFSVETDISKGIWDR 115 (665)
T ss_pred cee--------ccccccccchheeeccc
Confidence 332 21223455677777753
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00019 Score=63.71 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=75.1
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEE
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~i 299 (387)
.+..+..+.|+|.-..+|.+..+|.+.+..++. +.+..+. -|...++ +++|.|||+.||.|-.||+|++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 456788899999999999999999998888774 2222221 2455555 9999999999999999999999
Q ss_pred EECCCccEEEEeecccCCCceeEEEE
Q 035621 300 WEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
-|++++..+..+.......|+.+.|+
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEccCCCceeccccccccchheeecc
Confidence 99999999888544444567777775
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.73 E-value=0.016 Score=47.02 Aligned_cols=177 Identities=13% Similarity=0.178 Sum_probs=103.6
Q ss_pred cccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 3 HHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
.|..+|.++-+.+.-| .|+.+|+.+++......-... --..++...+..+... -.++...+||..+.+.+.+
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-----Wk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-----WKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-----SSSSEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-----ecCCeEEEEccccceEEEE
Confidence 4556777777777666 699999999987765532221 1344555566555543 4789999999999988888
Q ss_pred cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
+..+..=..++ .+++.|+.......++++|.++.+....+.-. . ..++-+.+- +|...+=.=....|...|.
T Consensus 126 ~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 126 FPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp EE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence 88776666666 56777888777788999999887766655421 1 234445554 4433333333333333333
Q ss_pred CcccccCCCCCCCCccceEee---------------eccCCCeEEEEEeeCCCCceEEEEe
Q 035621 155 FQLVDEHTDDKNPDDLMLQKF---------------VAHNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
.++.....+ .....-.+.|++.|.. +++++||-
T Consensus 203 ------------~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~-~~l~vTGK 250 (264)
T PF05096_consen 203 ------------ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET-DRLFVTGK 250 (264)
T ss_dssp ------------TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT-TEEEEEET
T ss_pred ------------CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC-CEEEEEeC
Confidence 112111111 1114567899998886 57777774
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.72 E-value=0.025 Score=48.65 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=105.5
Q ss_pred EEeccCCCEEEEec-CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 89 LATTADGSYLFTGG-LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 89 ~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
=+|.++|+.|+.++ .+| .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~---------- 110 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD---------- 110 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT----------
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC----------
Confidence 46788887666554 344 78888998887655443222223345677888877766666788888883
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC----------------------CCcEEEEeCCCCcEEEEEecCC
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM----------------------DCTCKFWRLLNGTHLSTVTFPC 223 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------------------d~~i~iwd~~~~~~~~~~~~~~ 223 (387)
+.+....+......+-...|..+.++..++..-. ...|.--|+.+|+....+....
T Consensus 111 --T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 111 --TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp --T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred --cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 3333334444455555566665555555543311 2346677888888777777788
Q ss_pred ceeEEEeCCCCCeEEEEccCC-----cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE-----EeC
Q 035621 224 AIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS-----AAE 293 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-----~~~ 293 (387)
-+..+.|+|....+++-+..| .-++|-++....... ++... .....+..=-|.|||..|.- ++.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~----~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK----KVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E----ESS-----TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce----eeecC--CCCcccccccccCCCCEEEEEeecCCCC
Confidence 889999999887777665533 136676665322111 11100 11234555578999986653 233
Q ss_pred CCcEEEEECCCccEEE
Q 035621 294 DGSVYIWEIEKRQVVM 309 (387)
Q Consensus 294 dg~i~iwd~~~~~~~~ 309 (387)
+..|.-+|+.+++...
T Consensus 263 ~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRR 278 (386)
T ss_dssp -EEEEEE-TTT--EEE
T ss_pred ceEEEeeCCCCCCceE
Confidence 5578888998876543
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=5.9e-05 Score=58.43 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=40.0
Q ss_pred CceEEEEeCCCcEEEEeCCCC-cEEEEEec-CCce-eEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 193 NSIIISCSMDCTCKFWRLLNG-THLSTVTF-PCAI-MGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
+..++.|+.+|.|.+|..... .....+.. ...+ ..+.--.++.+.++++.+|.|+.|++..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 367899999999999987621 11111111 1222 2233334556888999999999999886
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.69 E-value=0.036 Score=49.81 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=108.1
Q ss_pred eeeEEeccCCCEEEEe-cCCC----cEEEEeCCCCceeEEc-cCCCCCeEEEEEcCCCCEEEEEeCCC-----------c
Q 035621 86 VAPLATTADGSYLFTG-GLSG----NVYAISVPKGDILRSF-SAHDKPVSCLKISPDGSLLISGGDDG-----------V 148 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 148 (387)
+..+.++|+|++++.+ +..| .++++|+++++.+... .. .....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999998866 3333 6999999999776532 21 1123499999988776665433 3
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCC--eEEEEEeeCCCCceEEEE-eCC---CcEEEEeCCCC----cEEEE
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS--VTAITCCIGSFNSIIISC-SMD---CTCKFWRLLNG----THLST 218 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~-~~d---~~i~iwd~~~~----~~~~~ 218 (387)
|+.|.+... .......+...... ...+..++++ ++++.. ... ..+.+.|+..+ .....
T Consensus 204 v~~~~~gt~----------~~~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 204 VYRHKLGTP----------QSEDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp EEEEETTS-----------GGG-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred EEEEECCCC----------hHhCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 677777321 11112233333322 4456666554 665543 332 34788888774 22333
Q ss_pred E-ecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccc--cEEEEEEecCCCEEE-EE
Q 035621 219 V-TFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDG--VVVSVMMMNEGKNLV-SA 291 (387)
Q Consensus 219 ~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~-s~ 291 (387)
+ .....+....-+..+.+++.... ++.|...++...... ........+.. .+..+.. .+.+|+ .-
T Consensus 272 l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 3 32333333222224434443322 456666666653321 01111223444 3444444 344444 44
Q ss_pred eCCC--cEEEEECCCccEEEEeecccCCCce
Q 035621 292 AEDG--SVYIWEIEKRQVVMVLKNELAGSIS 320 (387)
Q Consensus 292 ~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~ 320 (387)
-.++ .|+++++..+.....+.....+.|.
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~ 374 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVS 374 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEE
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEe
Confidence 4444 5889999855555555544444443
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.68 E-value=0.018 Score=50.52 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=58.3
Q ss_pred ccccCCCcEEEeeCCCCcEEE---EeCC-----CCceeEec----cCCC-CCceeEEEcCc---c----ceeeeccccCC
Q 035621 2 LHHLPCNEVILTSSPEGPITA---YNPS-----SGAILAHF----SGSR-SPRRGLTFAGK---P----FIAASHISPTT 61 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~i---wd~~-----~~~~~~~~----~~~~-~~v~~~~~~~~---~----~~~~~~~~~~~ 61 (387)
++.+|++++||.|..+..+.+ |+.. .+...... .... ..|+++.+-|= . ......++.|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 578999999999988776655 5431 11222222 2111 46888877661 1 12245677799
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEecc
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA 93 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~ 93 (387)
.+|.|++|.....-.....-|+++|..+.+..
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 99999999963333344555788998888754
No 376
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.67 E-value=0.034 Score=48.98 Aligned_cols=236 Identities=10% Similarity=0.072 Sum_probs=124.8
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCCCCceeEEEcC---ccceeeeccccCCCCCeEEEEEccCC--C-
Q 035621 7 CNEVILTSSPEGPITAYNPSSGA-----ILAHFSGSRSPRRGLTFAG---KPFIAASHISPTTGSGSVHLYNLWSS--T- 75 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~v~vw~~~~~--~- 75 (387)
+...+++|+..|.++||++.... .+-+. .-..||..+..-. +. ....++ .-.-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~--~~~~La-VLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGS--EDLQLA-VLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCC--CcceEE-EecCCEEEEEEEEecCCCc
Confidence 44689999999999999985433 11111 1345666665432 00 000011 123456667766221 1
Q ss_pred ---------cccccCCCCCeeeEEeccC-----CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621 76 ---------PLHNIPVPEPVAPLATTAD-----GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 76 ---------~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 141 (387)
.+.....+.....+++-|- ..++.+-+.||.+.+|+-+.-...+.+.. .--.-.+.|.+..+.++
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 1111123344555555442 35788889999999999655444444443 22334578888888999
Q ss_pred EEeCCCcEEEEeCCcccccCCCCC-----------CCCccceEeeeccCCCeEEEEEeeC--CCCceEEEEeCCCcEEEE
Q 035621 142 SGGDDGVIATVPIFQLVDEHTDDK-----------NPDDLMLQKFVAHNDSVTAITCCIG--SFNSIIISCSMDCTCKFW 208 (387)
Q Consensus 142 ~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~d~~i~iw 208 (387)
+++.+..+..|....+........ ...-.+--++ .-...+..+..... .....++-| ..++.+.
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l 267 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLG--ERSLFCL 267 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEe--cceEEEE
Confidence 999999999998754332221111 0001111111 12234444444332 112333333 3456666
Q ss_pred eCCCCcEEEEEecCCceeEEEe-------CCC-CCeEEEEccCCcEEEEec
Q 035621 209 RLLNGTHLSTVTFPCAIMGLAL-------DPT-ETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 209 d~~~~~~~~~~~~~~~v~~~~~-------~~~-~~~l~~~~~dg~i~i~d~ 251 (387)
+. +|......+......+++. .|. ...+++++.++.+.+|.=
T Consensus 268 ~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d 317 (418)
T PF14727_consen 268 KD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED 317 (418)
T ss_pred cC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence 64 4555544444443333321 122 125888888999888853
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.65 E-value=0.00015 Score=39.56 Aligned_cols=32 Identities=41% Similarity=0.784 Sum_probs=29.4
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
..|...|.+++|.+++.++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 36788999999999999999999999999996
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0011 Score=57.90 Aligned_cols=142 Identities=10% Similarity=0.162 Sum_probs=100.0
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCCCCeEEEEEccCCCc-------ccc
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTGSGSVHLYNLWSSTP-------LHN 79 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~-------~~~ 79 (387)
+|.++.....++--|++.|+.+.+++-+.. |+-+.+.|+... ....-+.|-.+..|.-||.+-... -+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 345566667788899999999999987777 777778774322 122223366788999999753221 112
Q ss_pred cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
+.......|++-..+| ++++|+.+|.|++||--..+....+++...+|..+..+.+|++++..+. .++.+.++
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 2234556777776666 7999999999999996333444557788899999999999998876654 56666665
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.017 Score=46.76 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=133.8
Q ss_pred cCCCcccccCCCCCeeeEEeccCC-CEEEEecCCCc-EEEEeCCCCceeEEccCCCC--CeEEEEEcCCCCEEEEEeCC-
Q 035621 72 WSSTPLHNIPVPEPVAPLATTADG-SYLFTGGLSGN-VYAISVPKGDILRSFSAHDK--PVSCLKISPDGSLLISGGDD- 146 (387)
Q Consensus 72 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d- 146 (387)
+.++.+.....+.....++++|.. .-++.+-.-|+ ..++|....+...++...++ -.-.=.|+|||.+|...-.|
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 356777777777888889999954 44666655564 57889888876665542221 11223699999998876544
Q ss_pred ----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC------------------CCc
Q 035621 147 ----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM------------------DCT 204 (387)
Q Consensus 147 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------------------d~~ 204 (387)
|.|-+||.+. ....+-++..|.-.-..+.+.+++ +.++.+.. .-+
T Consensus 136 d~~rGViGvYd~r~-----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 136 DPNRGVIGVYDARE-----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred CCCCceEEEEeccc-----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCcc
Confidence 7799999853 333455666777666778888775 66665432 123
Q ss_pred EEEEeCCCCcEEEEEec-----CCceeEEEeCCCCCeEEEEccCCcE-----EEEeccccccccccccceeEeecccccc
Q 035621 205 CKFWRLLNGTHLSTVTF-----PCAIMGLALDPTETDFFAAGSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDG 274 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 274 (387)
+.+.|..+|..+.+... ...+..++..+||..++.+-..|.- .+=-...+....... ........-..
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~--~pee~~~~~an 280 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD--LPEEQTAAFAN 280 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccC--CCHHHHHHHHh
Confidence 55556566666655543 3467888888888766655332211 000000000000000 00000012234
Q ss_pred cEEEEEEecCCCEEE-EEeCCCcEEEEECCCccEEEEee
Q 035621 275 VVVSVMMMNEGKNLV-SAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.|-+++.+.+..+++ |+-..+..-+||..+|.++....
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 577888876555554 55456678899999999986554
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0035 Score=59.64 Aligned_cols=103 Identities=23% Similarity=0.350 Sum_probs=75.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 94 DGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 94 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
.+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+ ......
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~------------~~~k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM------------HRAKIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc------------cCCcce
Confidence 4567889999999998887542 111222234679999999999999999999999999999 566778
Q ss_pred EeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeC
Q 035621 173 QKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~ 210 (387)
+.+..|..+.+.+-+.. .+.+..++++..-|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88887877777665432 222356777776665 5654
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.50 E-value=0.026 Score=49.65 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcC
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG 48 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 48 (387)
||...++.|..+|.|++|.. +|..+..-.-|..+|..+....
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 67789999999999999995 7877766667888888887754
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.49 E-value=0.084 Score=50.68 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=108.9
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEccCCCCC--------eEEEEEcC----------------CCCEEEEEeCCCcEE
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP--------VSCLKISP----------------DGSLLISGGDDGVIA 150 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 150 (387)
+..++.++.++.|.-.|..+|+.+.++...... .+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988776532210 12233321 234788888999988
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCe-------------EEEEEeeCCCCceEEEEeC----------CCcEEE
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-------------TAITCCIGSFNSIIISCSM----------DCTCKF 207 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~~~~~~~l~s~~~----------d~~i~i 207 (387)
-.|. .+++.+..+.. .+.+ ..+.-.|--.+..++.|+. +|.|+-
T Consensus 274 ALDA------------~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 274 ALDA------------DTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEC------------CCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 8887 33333333211 1110 0011111111245666643 688999
Q ss_pred EeCCCCcEEEEEecCCc-------------------eeEEEeCCCCCeEEEEccCC------------------cEEEEe
Q 035621 208 WRLLNGTHLSTVTFPCA-------------------IMGLALDPTETDFFAAGSDG------------------LIYKGL 250 (387)
Q Consensus 208 wd~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~l~~~~~dg------------------~i~i~d 250 (387)
+|.++|+.+..+....+ -...++++....++.+..+. .|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 99999999888752110 02344555555555443222 222233
Q ss_pred ccccccccccccceeEeecc-ccc-------ccEEEEEEec-CCC---EEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 251 LKYQSRQQMHKGQELVTLAN-RHD-------GVVVSVMMMN-EGK---NLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~-------~~v~~~~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
.++++. .-.+.. .|. ....-+.+.. +|+ .++.++.+|.+++.|.++|+++...+.
T Consensus 421 ~~TGk~--------~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 421 ATTGKE--------RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCCCce--------EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 333221 111111 111 1111122222 553 788999999999999999999987653
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.48 E-value=0.04 Score=51.35 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=100.0
Q ss_pred CCceeEEEcCccceeeecccc--CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC------------
Q 035621 39 SPRRGLTFAGKPFIAASHISP--TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS------------ 104 (387)
Q Consensus 39 ~~v~~~~~~~~~~~~~~~~~~--~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 104 (387)
..+.+.+++|++...+..... ...|..-.+|-...+.....+........-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 357788888876554432211 112333344433223222333333458889999998877766422
Q ss_pred CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeE
Q 035621 105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVT 183 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 183 (387)
+.+.+.++..++... ...+.|..+.|+|||..++... ++.|.+=-+...... . ..-.....+. .-...+.
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G----~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG----Q-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC----c-eeecccEEeecccCCccc
Confidence 234444444443322 2356799999999999888766 467766333111000 0 0001111222 2233457
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i 248 (387)
++.|..+. . |+.+..++.-.+|.+.- |.....+.. ..++..++-+++ .+++...+|.+.+
T Consensus 501 ~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 88898774 4 44555555444555432 222212122 345666666653 4566666664443
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.0084 Score=55.67 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 126 KPVSCLKISPDGSLLISGG------DDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 126 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
..+.+.+++|+|+.++... .|. .|.+++.. ... ..+.. ......-.|+|++ ..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-------------g~~-~~lt~-g~~~t~PsWspDG--~~lw 412 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-------------GVA-VQVLE-GHSLTRPSWSLDA--DAVW 412 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-------------Ccc-eeeec-CCCCCCceECCCC--CceE
Confidence 4678899999999877665 243 34444431 111 11111 1236677788774 4444
Q ss_pred EEeC------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621 198 SCSM------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL 265 (387)
Q Consensus 198 s~~~------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 265 (387)
+... .+.+.+.++..+.... ..+..|..+.|+|||..++... +|.|++--+.....-. ......
T Consensus 413 ~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~ 488 (591)
T PRK13616 413 VVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNP 488 (591)
T ss_pred EEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeeccc
Confidence 4432 2334444554443322 3456799999999999888766 4677763222211000 001111
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
..+...-...+.++.|.+++.++ .+..++.-.+|.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 22222333446889999998854 5555444444443
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.36 E-value=0.026 Score=52.55 Aligned_cols=224 Identities=11% Similarity=0.111 Sum_probs=106.9
Q ss_pred eEEEEEccCCCcccccCCCCCe-eeEEeccCCCEEEEecCC------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcC
Q 035621 65 SVHLYNLWSSTPLHNIPVPEPV-APLATTADGSYLFTGGLS------GNVYAISVPKGDILR--SFSAHDKPVSCLKISP 135 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~ 135 (387)
.+..||..+++....-..+.+. ......-++...++||.+ ..+..||+.+..-.. .+.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence 4677887766533222222211 111222366677777753 247788887664321 11111112222222
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-------
Q 035621 136 DGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC------- 203 (387)
Q Consensus 136 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~------- 203 (387)
+++..+.|+.++ .+..||.... ....+..+.........+. -+ +.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~----------~W~~~~~mp~~r~~~~~~~--~~--g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD----------KWKMLPDMPIALSSYGMCV--LD--QYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC----------eEEECCCCCcccccccEEE--EC--CEEEEEeCCCcccccccc
Confidence 677778888764 3677876321 1111111111111111111 12 46677776542
Q ss_pred ----------------cEEEEeCCCCcEE--EEEecCCceeEEEeCCCCCeEEEEccC------CcEEEEeccc-ccccc
Q 035621 204 ----------------TCKFWRLLNGTHL--STVTFPCAIMGLALDPTETDFFAAGSD------GLIYKGLLKY-QSRQQ 258 (387)
Q Consensus 204 ----------------~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~ 258 (387)
.+..||..+.+-. ..+..+..-.+++ .-+++..+.|+.+ ..+..||..+ .....
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 4667887665422 1111111111122 2245666667653 2356777775 33221
Q ss_pred ccccceeEeecccccccEEEEEEecCCCEEEEEeCCC--cEEEEECCCccEEEEeecc
Q 035621 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG--SVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 314 (387)
.. .+.........+.+ +++..++||.|| ++..||..+.+-...-..|
T Consensus 496 ~~-------~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 496 IT-------TTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cc-------ccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 11 11111222222222 778899999888 7888888887665444444
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.063 Score=43.97 Aligned_cols=177 Identities=11% Similarity=0.065 Sum_probs=110.8
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAISV 112 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 112 (387)
.+-...+.++.|+|+...+. +......-.++=..+|+.+.+++.. .....+.+..+|++.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLF----av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLF----AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEE----EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 44455599999999544333 2555666666666788888888754 45667888888888888778888888877
Q ss_pred CCCceeEE-------c---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 113 PKGDILRS-------F---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 113 ~~~~~~~~-------~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
.....+.. + ...+...-.++|.|....|+.+-+-.-+.||......+..... ....+.....-.-..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~--~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH--ASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc--cccCcccccceEeecc
Confidence 55422211 1 1125677899999999989988888888888764221110000 0000000000112346
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV 219 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 219 (387)
.++.|.+.. +.+++-+.+++.+.-.|.. |..+..+
T Consensus 236 Sgl~~~~~~-~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 236 SGLEFNAIT-NSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccceecCCC-CcEEEEecCCceEEEEecC-CCeeeeE
Confidence 677777654 5788888888888888864 4434444
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.27 E-value=0.081 Score=43.75 Aligned_cols=152 Identities=16% Similarity=0.083 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 127 PVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 127 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
.+.+.+++++++.++... ....++++... ....... ....+....|.++ +...+....+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------------~~~~~~~-~g~~l~~PS~d~~--g~~W~v~~~~~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------------GPVRPVL-TGGSLTRPSWDPD--GWVWTVDDGSG 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------------Ccceeec-cCCccccccccCC--CCEEEEEcCCC
Confidence 688999999999777665 33345555431 1111111 2236666777776 35555555566
Q ss_pred cEEEEe-CCCCcE-EEEEec--C-CceeEEEeCCCCCeEEEEc---cCCcEEEEeccccccccccccceeEeeccccccc
Q 035621 204 TCKFWR-LLNGTH-LSTVTF--P-CAIMGLALDPTETDFFAAG---SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 204 ~i~iwd-~~~~~~-~~~~~~--~-~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
..+++. ..++.. ...+.. . ..|..+.++|||..++... .++.|++--+........................
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 666663 333332 222222 1 2899999999999888765 3577777665533222010111222222234568
Q ss_pred EEEEEEecCCCEEEEEeCCC
Q 035621 276 VVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~~dg 295 (387)
++.+.|.+++.+++.+...+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 99999999998777665443
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.27 E-value=0.001 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=31.1
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
....|..++|+|...+||.+..+|.|.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3456999999999999999999999999999 55543
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.25 E-value=0.11 Score=45.34 Aligned_cols=195 Identities=13% Similarity=0.171 Sum_probs=90.9
Q ss_pred CCCEEEEec-CCCcEEEEeCCCC----ceeEEccC---C----CCCeEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Q 035621 94 DGSYLFTGG-LSGNVYAISVPKG----DILRSFSA---H----DKPVSCLKISPDGSLLISGGDD------GVIATVPIF 155 (387)
Q Consensus 94 ~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 155 (387)
+.++|+..+ ..+.|+++|+.+. ++.+.++. + -.....+..-|+|+.++++-.| |.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345676666 6789999998632 34444432 1 1223445556788888875322 346666652
Q ss_pred cccccCCCCCCCCccceEeeecc---CCCeEEEEEeeCCCCceEEEEeC--------------------CCcEEEEeCCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAH---NDSVTAITCCIGSFNSIIISCSM--------------------DCTCKFWRLLN 212 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~ 212 (387)
+.......... ...-...-+.|.. +.++|... ..++.+||+.+
T Consensus 166 ------------tf~v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 166 ------------TFEVKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp ------------T--EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred ------------cccccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 22222222221 1122345555553 66666542 35799999999
Q ss_pred CcEEEEEecC---CceeEEEeC--CCCCeEEEEcc-CCcEEEEeccccccccccccceeEee----------------cc
Q 035621 213 GTHLSTVTFP---CAIMGLALD--PTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTL----------------AN 270 (387)
Q Consensus 213 ~~~~~~~~~~---~~v~~~~~~--~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~----------------~~ 270 (387)
.+.++++... ..+..+.|. |+..+-++++. .++|..|--........ ..+..+ +.
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a---~kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA---EKVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE---EEEEEE--EE--SS---GGGGGG-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee---eEEEECCCcccCcccccccccccc
Confidence 9999999865 245566554 55666666554 55566554422221111 111111 11
Q ss_pred cccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 035621 271 RHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKR 305 (387)
Q Consensus 271 ~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 305 (387)
.-..-|+.+..|.|.++|..++ .+|.|+.||+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 1134589999999999887665 6899999999874
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0012 Score=62.61 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=73.7
Q ss_pred eccccCCCCCeEEEEEccCCCc--ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621 55 SHISPTTGSGSVHLYNLWSSTP--LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK 132 (387)
Q Consensus 55 ~~~~~~~~d~~v~vw~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 132 (387)
..++.|+..|.+...|....-. .+.-....+|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3455678888888888755321 22233567999999999999999999999999999999999888877766655544
Q ss_pred E---cCCCCEEEEEeCCCcEEEEeC
Q 035621 133 I---SPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 133 ~---~~~~~~l~~~~~dg~i~iwd~ 154 (387)
+ ..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 3 345567888888886 5654
No 391
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=97.22 E-value=0.045 Score=51.15 Aligned_cols=159 Identities=11% Similarity=0.122 Sum_probs=100.4
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCC----C--C-----CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDD----K--N-----PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~--~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
.++++++. .+.|.+|++.......... . . .......... ....|+.|.+..-+....|+.|..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 45666654 5788899886543321100 0 0 0000011111 3345777776666667899999999999
Q ss_pred EEEeCCC-------C-------------cEEEEEecCCceeEEEeC--CCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 206 KFWRLLN-------G-------------THLSTVTFPCAIMGLALD--PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 206 ~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
.+|.+++ . ++...+..+...++++++ ...++||++++...|.+|-+.......... .
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-~ 205 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-P 205 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-c
Confidence 9997631 1 123344456789999999 888999999999999998776531111110 0
Q ss_pred eeEeecccccccEEEEEEecCC---C---EEEEEeCCCcEEEEECC
Q 035621 264 ELVTLANRHDGVVVSVMMMNEG---K---NLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iwd~~ 303 (387)
...|...|.+++|-++. . .+++++-.|.+.+|++.
T Consensus 206 -----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 206 -----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 11256678899997643 2 78889999999998883
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0096 Score=52.35 Aligned_cols=143 Identities=13% Similarity=0.217 Sum_probs=94.5
Q ss_pred CCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 94 DGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-------LLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 94 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+.++|+ .+.....++-.|++.|+.+..++-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv--------- 413 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV--------- 413 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccc---------
Confidence 444444 444556799999999999999987665 77778888653 234566788899999852
Q ss_pred CCCccceEeeeccC----CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE-EEEe-cCCceeEEEeCCCCCeEEE
Q 035621 166 NPDDLMLQKFVAHN----DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL-STVT-FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 166 ~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~ 239 (387)
.....+...+.|+ ..-.|.+-..+ .+++.||.+|.|++||- .+... ..++ ...+|..+..+.+|++|++
T Consensus 414 -~~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 414 -QGKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred -cCcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 1111222222222 23344444433 58999999999999996 44333 3333 5789999999999999887
Q ss_pred EccCCcEEEEecc
Q 035621 240 AGSDGLIYKGLLK 252 (387)
Q Consensus 240 ~~~dg~i~i~d~~ 252 (387)
.+. ..+.+.+..
T Consensus 489 Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 489 TCK-TYLLLIDTL 500 (644)
T ss_pred ecc-cEEEEEEEe
Confidence 764 455555543
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.17 E-value=0.25 Score=47.39 Aligned_cols=292 Identities=10% Similarity=0.068 Sum_probs=144.5
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEE-ccCCCcccccC---
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYN-LWSSTPLHNIP--- 81 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~-~~~~~~~~~~~--- 81 (387)
.++.++.++.+...++..+. ++... .....|.|+.++|- ....+..++.|..+..+.+.- ..+...+....
T Consensus 501 qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~ 579 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG 579 (1096)
T ss_pred EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC
Confidence 34444444445444544443 22222 23456889988872 222222334454444443332 22332222221
Q ss_pred --CCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 82 --VPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 82 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
.+..+.-.++-.|..+|.++..||.+..|.+ .+++.-..-+ -...++.--.|+..++.-+-+..|+-..+|.-+
T Consensus 580 ~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 580 EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 3455666677777899999999998876654 4444322221 124566656676666555555566665566441
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEE-EEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeEEEeCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAI-TCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLALDP 232 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~ 232 (387)
++.+..- ..-..+..+ .|+.+..+..++++. .+.+++.-+..-+ .++++.....+..+++.+
T Consensus 660 -------------~kLv~sp-ls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~ 724 (1096)
T KOG1897|consen 660 -------------GKLVYSP-LSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE 724 (1096)
T ss_pred -------------CcEEEec-cchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc
Confidence 1111110 000011111 122222234555554 3557776655433 234566677888889988
Q ss_pred CCCeEEEEccCC--------------cEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeC----
Q 035621 233 TETDFFAAGSDG--------------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAE---- 293 (387)
Q Consensus 233 ~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~---- 293 (387)
....+.+.+... .++++|-++......++... ..-.-.+.++.|..| +.+++.|..
T Consensus 725 ~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 725 SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 655555554321 24444444321111100000 001123556668777 677777742
Q ss_pred ------CCcEEEEECCCccEEEEe-ecccCCCceeE
Q 035621 294 ------DGSVYIWEIEKRQVVMVL-KNELAGSISEM 322 (387)
Q Consensus 294 ------dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~ 322 (387)
.|.|.+|.+..++.+... +....|.|.++
T Consensus 800 de~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL 835 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL 835 (1096)
T ss_pred CCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence 488999998884333333 33345566555
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.13 E-value=0.0022 Score=36.83 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=31.6
Q ss_pred cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621 80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
...+..|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 335567999999999999999999999999998 5544
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.016 Score=55.78 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCEEEE--EeCCCcEEEEeCCcccccCCCCCCCCccceEe---eeccCCCeEEEEEeeCCCCceEEEEe
Q 035621 126 KPVSCLKISPDGSLLIS--GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK---FVAHNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 126 ~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
-++..+...+|+...++ .+.+-.|..||++......... ..++.. ......-..++.|.|.. ....+.+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDL 175 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCc-cchhhhhc
Confidence 35666667777664443 3344478999997654332111 111111 11122234466777765 34566677
Q ss_pred CCCcEEEEeCCCCc-EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 201 MDCTCKFWRLLNGT-HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 201 ~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
.|+.|++..+.... ....+......++++|+|.|+.+++|-..|.+.-|............ .+ ......|.++
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp-----~~e~yrvl~v 249 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PP-----VEENYRVLSV 249 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC-CC-----cCCCcceeEE
Confidence 88999988775432 33445667789999999999999999999999888665432111111 11 1124679999
Q ss_pred EEecCCCEEEE
Q 035621 280 MMMNEGKNLVS 290 (387)
Q Consensus 280 ~~s~~~~~l~s 290 (387)
+|-....++++
T Consensus 250 ~Wl~t~eflvv 260 (1405)
T KOG3630|consen 250 TWLSTQEFLVV 260 (1405)
T ss_pred EEecceeEEEE
Confidence 99877666664
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.95 E-value=0.21 Score=46.57 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=111.7
Q ss_pred CeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCC-C-----cEEEEeCCCCceeE--EccCCCCCeEEEEE
Q 035621 64 GSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLS-G-----NVYAISVPKGDILR--SFSAHDKPVSCLKI 133 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~ 133 (387)
..+..+|..++....... .+..-.+++.. ++...++||.+ | .+..||....+-.. .+...........+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 467888887774433333 33333444444 45777888888 3 67888887765322 12222222222222
Q ss_pred cCCCCEEEEEeCCCc-----EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-----
Q 035621 134 SPDGSLLISGGDDGV-----IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----- 203 (387)
Q Consensus 134 ~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----- 203 (387)
+|.+.++|+.||. +-.||... .....+..+.. .........-. +.+.+.|+.++
T Consensus 380 --~g~iYavGG~dg~~~l~svE~YDp~~----------~~W~~va~m~~---~r~~~gv~~~~-g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 380 --DGKLYAVGGFDGEKSLNSVECYDPVT----------NKWTPVAPMLT---RRSGHGVAVLG-GKLYIIGGGDGSSNCL 443 (571)
T ss_pred --CCEEEEEeccccccccccEEEecCCC----------CcccccCCCCc---ceeeeEEEEEC-CEEEEEcCcCCCcccc
Confidence 6788999999865 55565522 11222221111 11122222222 47778887654
Q ss_pred -cEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCc-----EEEEeccccccccccccceeEeeccccccc
Q 035621 204 -TCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGL-----IYKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 204 -~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
++..||..+.+-...-+ ....-..++. -++...++|+.|+. |..||..+..... ..........
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~-------v~~m~~~rs~ 515 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM-------VAPMTSPRSA 515 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE-------cccCcccccc
Confidence 56788887765332222 1111112222 25667777777763 6667776643221 1111122222
Q ss_pred EEEEEEecCCCEEEEEeCCC-----cEEEEECCCccEE
Q 035621 276 VVSVMMMNEGKNLVSAAEDG-----SVYIWEIEKRQVV 308 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 308 (387)
+-...+ +++..+.|+.|| +|..||..+++-.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence 222222 567788888776 5667776665443
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0039 Score=48.66 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=68.6
Q ss_pred ccccCCCCCeEEEEEccCCCccc-ccC-CCCCeee-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEE
Q 035621 56 HISPTTGSGSVHLYNLWSSTPLH-NIP-VPEPVAP-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCL 131 (387)
Q Consensus 56 ~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~ 131 (387)
.++.|+.+|.|.+|+........ .+. ..+.+.+ +.-..++.+..++..+|.|+.|++.-.+.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 45558899999999986322221 111 1233333 3333456688899999999999998888887777777 566666
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEeCCcc
Q 035621 132 KISPDGSLLISG--GDDGVIATVPIFQL 157 (387)
Q Consensus 132 ~~~~~~~~l~~~--~~dg~i~iwd~~~~ 157 (387)
..+..+..+..+ |.|..++.|++...
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhh
Confidence 666666677777 77777888877443
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.75 E-value=0.35 Score=42.42 Aligned_cols=184 Identities=9% Similarity=0.056 Sum_probs=90.4
Q ss_pred cCCCCCeEEEEEccCC----CcccccCC--------CCCeeeEEeccCCCEEEEec------CCCcEEEEeCCCCceeEE
Q 035621 59 PTTGSGSVHLYNLWSS----TPLHNIPV--------PEPVAPLATTADGSYLFTGG------LSGNVYAISVPKGDILRS 120 (387)
Q Consensus 59 ~~~~d~~v~vw~~~~~----~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~ 120 (387)
.+-..+.|.+.|+.+. +..+.++. -.....+..-|+|+.++++- .-|.+.++|-++.+....
T Consensus 93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence 3667889999999743 22333331 02234455667888888752 224688888887777777
Q ss_pred ccCCC---CCeEEEEEcCCCCEEEEEeC--------------------CCcEEEEeCCcccccCCCCCCCCccceEeeec
Q 035621 121 FSAHD---KPVSCLKISPDGSLLISGGD--------------------DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA 177 (387)
Q Consensus 121 ~~~~~---~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 177 (387)
..... ..-..+-|.|..+.++|... ..++.+||+ ...+.++++.-
T Consensus 173 We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~------------~~r~~~Q~idL 240 (461)
T PF05694_consen 173 WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW------------STRKLLQTIDL 240 (461)
T ss_dssp --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET------------TTTEEEEEEES
T ss_pred eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC------------CCCcEeeEEec
Confidence 65422 23456778888788887643 257999999 56667776655
Q ss_pred cCC--CeEEEEEeeCCCCce-EEEEeCCCcEEEEeC-CCCc----EEEEEec------------------CCceeEEEeC
Q 035621 178 HND--SVTAITCCIGSFNSI-IISCSMDCTCKFWRL-LNGT----HLSTVTF------------------PCAIMGLALD 231 (387)
Q Consensus 178 ~~~--~i~~~~~~~~~~~~~-l~s~~~d~~i~iwd~-~~~~----~~~~~~~------------------~~~v~~~~~~ 231 (387)
-.. ....+.|..++...+ ++.+....+|..|-- ..++ .+..+.. +.-|+.+.+|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 433 234566666654333 333334445544432 3332 1222210 3457899999
Q ss_pred CCCCeEEEEcc-CCcEEEEecccc
Q 035621 232 PTETDFFAAGS-DGLIYKGLLKYQ 254 (387)
Q Consensus 232 ~~~~~l~~~~~-dg~i~i~d~~~~ 254 (387)
.|.++|.+++. .|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 99999998876 899999999874
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.75 E-value=0.37 Score=45.06 Aligned_cols=225 Identities=12% Similarity=0.140 Sum_probs=114.0
Q ss_pred CCcEEEeeCCCC------cEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC------CeEEEEEcc
Q 035621 7 CNEVILTSSPEG------PITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS------GSVHLYNLW 72 (387)
Q Consensus 7 ~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d------~~v~vw~~~ 72 (387)
.+.+++.|+.++ .+..||..+++... .+. ....-.+++..++..+.. |+.+ ..+..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~-----GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVV-----GGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEE-----ccccCCCcccceEEEecCC
Confidence 355777888773 58889988775433 222 222345556655443333 6666 467788887
Q ss_pred CCCcccccCCCCCeeeEEe-ccCCCEEEEecCCC-----cEEEEeCCCCcee--EEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621 73 SSTPLHNIPVPEPVAPLAT-TADGSYLFTGGLSG-----NVYAISVPKGDIL--RSFSAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 73 ~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg-----~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
+++-...-+-..+-..+.. .-+|...++||.|| ++..||..+.+-- ..+.......-...+ +|...++|+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence 7764432222222222222 22677888898887 4778887665432 112111122222223 678888888
Q ss_pred CCCc------EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-----EEEEeCCCC
Q 035621 145 DDGV------IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-----CKFWRLLNG 213 (387)
Q Consensus 145 ~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~ 213 (387)
.++. +..||... .....+..+........ ++.. + +.+.+.|+.|+. +..||..+.
T Consensus 436 ~~~~~~~l~sve~YDP~t----------~~W~~~~~M~~~R~~~g-~a~~-~--~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPET----------NTWTLIAPMNTRRSGFG-VAVL-N--GKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred cCCCccccceEEEEcCCC----------CceeecCCcccccccce-EEEE-C--CEEEEECCccCCCccceEEEEcCCCC
Confidence 6654 45565522 11111111111111111 2222 2 377888887763 677887766
Q ss_pred cEEEEEecCCceeEEEeC-CCCCeEEEEccCCc-----EEEEeccc
Q 035621 214 THLSTVTFPCAIMGLALD-PTETDFFAAGSDGL-----IYKGLLKY 253 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~-----i~i~d~~~ 253 (387)
+-...-............ -++...++|+.||. |..||..+
T Consensus 502 ~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 543332222111111111 24566677776653 45555444
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.74 E-value=0.2 Score=39.64 Aligned_cols=91 Identities=10% Similarity=0.046 Sum_probs=58.7
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEe--CCCCc-----EEEEEec-----CCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWR--LLNGT-----HLSTVTF-----PCAIMGLALDPTETDFFAAGSDGLIYKG 249 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~-----~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 249 (387)
-+.++|..+. ..+.++-+.+-+|.-|| ..+|. .+..++. +...-.++....|+..++.-+.++|...
T Consensus 160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3567777553 45666667788887787 55553 2333321 1223456667788888888888999999
Q ss_pred eccccccccccccceeEeecccccccEEEEEEe
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM 282 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (387)
|..++. .+.++. -....|+++||-
T Consensus 239 dp~tGK--------~L~eik-lPt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGK--------ILLEIK-LPTPQITSCCFG 262 (310)
T ss_pred CCCCCc--------EEEEEE-cCCCceEEEEec
Confidence 998843 333332 236789999996
No 401
>PHA02713 hypothetical protein; Provisional
Probab=96.73 E-value=0.13 Score=47.92 Aligned_cols=187 Identities=10% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCcEEEeeCCC------CcEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccC
Q 035621 7 CNEVILTSSPE------GPITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWS 73 (387)
Q Consensus 7 ~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~ 73 (387)
++.+.+.|+.+ ..+..||+.+..... .+..... -.+++...+..+.. |+.+ ..+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-~~~~~~~~g~IYvi-----GG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-RFSLAVIDDTIYAI-----GGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-ceeEEEECCEEEEE-----CCcCCCCCCceEEEEECCC
Confidence 55667777753 347788887664322 1111111 11233333333222 4433 3588899876
Q ss_pred CCcccccCCCCCeee-EEeccCCCEEEEecCCC-----------------------cEEEEeCCCCcee--EEccCCCCC
Q 035621 74 STPLHNIPVPEPVAP-LATTADGSYLFTGGLSG-----------------------NVYAISVPKGDIL--RSFSAHDKP 127 (387)
Q Consensus 74 ~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~~~~~~~~~ 127 (387)
.+-...-..+.+... .+..-+|+..+.|+.++ .+..||..+.+-. ..+......
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 643322222221111 11123677777777542 4777887765432 222111111
Q ss_pred eEEEEEcCCCCEEEEEeCCC------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC
Q 035621 128 VSCLKISPDGSLLISGGDDG------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM 201 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 201 (387)
...+.+ +++..+.|+.++ .+..||.... .....+..+.........+.+ + +.+.+.|+.
T Consensus 457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---------~~W~~~~~m~~~r~~~~~~~~--~--~~iyv~Gg~ 521 (557)
T PHA02713 457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTY---------NGWELITTTESRLSALHTILH--D--NTIMMLHCY 521 (557)
T ss_pred CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCC---------CCeeEccccCcccccceeEEE--C--CEEEEEeee
Confidence 112222 567777777542 3566776320 011222222222222222222 2 478889988
Q ss_pred CC--cEEEEeCCCCc
Q 035621 202 DC--TCKFWRLLNGT 214 (387)
Q Consensus 202 d~--~i~iwd~~~~~ 214 (387)
++ .+..||..+.+
T Consensus 522 ~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 522 ESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeehhhcCccccc
Confidence 88 66677766554
No 402
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.66 E-value=0.3 Score=40.50 Aligned_cols=214 Identities=10% Similarity=0.006 Sum_probs=121.5
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCC------CC-ceeEEccC-----CCCCeEEEEEcCCCC------------EE
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVP------KG-DILRSFSA-----HDKPVSCLKISPDGS------------LL 140 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 140 (387)
....++++|.+.+-++....+...+||.. .. .++..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35678999999888887788899999985 11 22333331 234677888875332 36
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCc--cceEeeec-cCCC-eEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDD--LMLQKFVA-HNDS-VTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH 215 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~ 215 (387)
+.+++||+|.-|.-.-. ... .....+.. .... -..+++.....+.+|+.+ -..++|.+||-.-.+.
T Consensus 104 if~tEdGTisaW~p~v~---------~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALG---------TTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred EEEeCCceEEeecCcCC---------cccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 77899999999974110 110 01111211 1122 345666544333555544 3478899998542221
Q ss_pred E--EEEecC-----------------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee-ccccccc
Q 035621 216 L--STVTFP-----------------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGV 275 (387)
Q Consensus 216 ~--~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~ 275 (387)
. ..+..+ -.|+-..-.++.+.=+.|..-|.|-+||..- ..+.++ ..+.-..
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---------~l~~r~as~g~LNa 245 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---------QLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---------cEEEEeccCCcccC
Confidence 1 011100 0111112223333333444457788888764 233333 1233345
Q ss_pred EEEEEEec------CCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621 276 VVSVMMMN------EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316 (387)
Q Consensus 276 v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (387)
.+.|+..| .+.+|+---.||+|..||..+++.+..+.....
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 67777755 456777666799999999999999988876533
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.51 E-value=0.16 Score=47.20 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=69.1
Q ss_pred ceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeC--CCCCeEEEEccCCcEEEEecccccccccccc-ceeEee
Q 035621 194 SIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALD--PTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-QELVTL 268 (387)
Q Consensus 194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~ 268 (387)
...+.-+...++.|||.+.+........ ...|..+.|. |+++.+++.+-...|.++.-.........+. ..+...
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 4444444456799999998886655544 7889999886 6889999999999998885432111111111 111111
Q ss_pred -ccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 269 -ANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 269 -~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
...|+ .+|.+..|.++|.+++.+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 12333 578999999998766654 3468888743
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.64 Score=43.41 Aligned_cols=176 Identities=10% Similarity=0.129 Sum_probs=89.0
Q ss_pred CCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--c--cCCCCCeEEEEEcCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--F--SAHDKPVSCLKISPD 136 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~~~~~~~ 136 (387)
.--.|+|++. +|..+..+. ...++-.+.|+.+.. |++...+|++++|++. |+.+.. . ......|..+.|..+
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecC
Confidence 3456889987 566666555 334888999998875 4555689999999984 333322 1 122334555555556
Q ss_pred CCEEEEEeCCCcEEEE-eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEe-CCCcEEEEeCCCC
Q 035621 137 GSLLISGGDDGVIATV-PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCS-MDCTCKFWRLLNG 213 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~-~d~~i~iwd~~~~ 213 (387)
|- +.-..+|.+.+- +....... .....+....+-.|-...+.+.. ..++--. ..+ ..++-....
T Consensus 139 GV--avlt~~g~v~~i~~~~~~~~~----------~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~ 205 (829)
T KOG2280|consen 139 GV--AVLTVSGQVILINGVEEPKLR----------KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES 205 (829)
T ss_pred ce--EEEecCCcEEEEcCCCcchhh----------hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence 63 333344544433 22111000 00000111111112211111100 1111100 000 011111111
Q ss_pred -cEEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 214 -THLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 214 -~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
.....+.. ...+..+..||+.++|+.-...|.|.+.+...
T Consensus 206 ~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 206 RVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred cccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 11122222 36788999999999999999999999988776
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.44 Score=39.26 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=102.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEe
Q 035621 122 SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 122 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
.+-...++++.|+|+.+.|++......-.++=. ..+..+.+++-. -.....|.+..+ +++.++--
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt------------~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dE 147 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT------------KEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDE 147 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEe------------cCCceEEEecccccCChhHeEEecC--CEEEEEeh
Confidence 344556999999999998888877666555432 244444444321 112223444433 46777777
Q ss_pred CCCcEEEEeCCCCcEEE-----EEe-----c-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc-cceeEee
Q 035621 201 MDCTCKFWRLLNGTHLS-----TVT-----F-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK-GQELVTL 268 (387)
Q Consensus 201 ~d~~i~iwd~~~~~~~~-----~~~-----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~ 268 (387)
.++.+.++.+....... .++ . +.....++|.|.+..++++-+..-+.+|............ .......
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 78888888776543221 222 2 4567889999999999999988888888776432111100 0000000
Q ss_pred cccccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 269 ANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
..-.-..|.++.|.+. +..|+-+.+++.+.-.|.. |+.+..+
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 0001234777888864 5566667777777777755 4434443
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.35 E-value=0.65 Score=43.40 Aligned_cols=141 Identities=14% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCcEEEeeCCCC------cEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccC
Q 035621 7 CNEVILTSSPEG------PITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWS 73 (387)
Q Consensus 7 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~ 73 (387)
++.+++.|+.++ .+..||..+.+....- ....... +++...+..+.. |+.+ ..+..||..+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~-----GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVI-----GGIYNSISLNTVESWKPGE 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEE-----eCCCCCEecceEEEEcCCC
Confidence 455667776542 5778888776553211 1111112 222223222222 3332 3577788776
Q ss_pred CCcccccCCCCCee-eEEeccCCCEEEEecCC------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEe
Q 035621 74 STPLHNIPVPEPVA-PLATTADGSYLFTGGLS------GNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 74 ~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
++-...-..+.+.. ..+..-+++..+.||.+ ..+..||+.+.+-.. .+....... +++. .++..++.|+
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG 445 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGG 445 (534)
T ss_pred CceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECC
Confidence 64332222111111 11122356667777632 358889987654322 111111111 2222 2566667776
Q ss_pred CCC--------cEEEEeCC
Q 035621 145 DDG--------VIATVPIF 155 (387)
Q Consensus 145 ~dg--------~i~iwd~~ 155 (387)
.+. .+.+||..
T Consensus 446 ~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ccCCCCCcccceEEEecCC
Confidence 432 37777773
No 407
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.30 E-value=0.66 Score=40.38 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=114.7
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCcccccCC
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS----PDGSL--LISGG-DD---GVIATVPIFQLVDEHT 162 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~~~~~~~~ 162 (387)
|...+++....++-+.+||+ .|+.+..+. .+.++.+..- -+++. |+.++ .+ .+|++|.+..
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~------ 136 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP------ 136 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET------
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC------
Confidence 34456777777888999998 566666664 2344443321 13332 34443 32 4699998731
Q ss_pred CCCCCCccceEeee-------ccCCCeEEEEEeeCC-CC-ceEEEEeCCCcEEEEeCC---CC----cEEEEEecCCcee
Q 035621 163 DDKNPDDLMLQKFV-------AHNDSVTAITCCIGS-FN-SIIISCSMDCTCKFWRLL---NG----THLSTVTFPCAIM 226 (387)
Q Consensus 163 ~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~~-~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~ 226 (387)
....+..+. .....+..+|+-.+. ++ -+++....+|.+..|.+. .+ +.+++|.....+.
T Consensus 137 -----~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E 211 (381)
T PF02333_consen 137 -----DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE 211 (381)
T ss_dssp -----TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE
T ss_pred -----CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce
Confidence 111122221 122346777775432 23 466777889988888774 33 4678888888999
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec-ccccccEEEEEEec--CCC-EEE-EEeCCCcEEEEE
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRHDGVVVSVMMMN--EGK-NLV-SAAEDGSVYIWE 301 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~-~l~-s~~~dg~i~iwd 301 (387)
.|........|+.+-++.-|..|+........ ...+.... ......|-.|+.-. +++ ||+ |.-.+++..||+
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~---~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGND---RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S-----EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCc---ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 99999999999999999888888776532211 11111111 12345677777743 333 454 444677899999
Q ss_pred CCC-ccEEEEeec
Q 035621 302 IEK-RQVVMVLKN 313 (387)
Q Consensus 302 ~~~-~~~~~~~~~ 313 (387)
.+. ...+..|.-
T Consensus 289 r~~~~~~~g~f~i 301 (381)
T PF02333_consen 289 REGPNAYVGSFRI 301 (381)
T ss_dssp SSTT--EEEEEEE
T ss_pred cCCCCcccceEEe
Confidence 876 466666643
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.29 E-value=0.48 Score=38.77 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCC
Q 035621 127 PVSCLKISPDGSLLISGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 127 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
-...+.|..++.++-+.+.-| .|+.+|+ .+++......-.. ---..++...+ .+..-.=.++
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~------------~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~ 110 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDL------------ETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEET------------TTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSSS
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEEC------------CCCcEEEEEECCccccceeEEEECC---EEEEEEecCC
Confidence 355788877888888888766 6888888 3444433332221 11223333322 4555555689
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
...+||..+.+.+.++..+..=..++ .+++.|+.+.....++.+|..+...... ..+......-..++.+.|-
T Consensus 111 ~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~----i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT----IQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----EE-EETTEE---EEEEEEE-
T ss_pred eEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----EEEEECCEECCCcEeEEEE-
Confidence 99999999999999999877777777 5678888888888999999776332211 1111111122346667775
Q ss_pred CCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 284 EGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+|...|-.=....|..-|..+|+++..+.
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 67666766666788899999999998774
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.12 E-value=0.55 Score=43.89 Aligned_cols=188 Identities=8% Similarity=0.020 Sum_probs=87.3
Q ss_pred cCCCEEEEecCCC------cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccc
Q 035621 93 ADGSYLFTGGLSG------NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVD 159 (387)
Q Consensus 93 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 159 (387)
.++..++.|+.++ .+..||..+.+-... +.........+.+ +++.++.|+.++ .+..||....
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 4556677776542 577888876654221 1111122222232 567777887653 3556666321
Q ss_pred cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC------CcEEEEeCCCCcEEEEEecC--CceeEEEeC
Q 035621 160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTFP--CAIMGLALD 231 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~ 231 (387)
.......+...... .+++. .+ +.+++.|+.+ ..+..||..+.+-...-..+ ..-.+++ .
T Consensus 369 --------~W~~~~~lp~~r~~-~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~ 435 (534)
T PHA03098 369 --------KWREEPPLIFPRYN-PCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-Y 435 (534)
T ss_pred --------ceeeCCCcCcCCcc-ceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-E
Confidence 11111111111111 11222 12 3667777632 35788898765422211111 1111222 2
Q ss_pred CCCCeEEEEccCC--------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEE
Q 035621 232 PTETDFFAAGSDG--------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVY 298 (387)
Q Consensus 232 ~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~ 298 (387)
.++..++.|+.++ .+.+||..+.......... ........+. .+++.++.||.+ ..|.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-------~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-------FPRINASLCI--FNNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-------cccccceEEE--ECCEEEEEcCCcCCcccceeE
Confidence 3455666665421 3788887765433221110 0011111122 266777777754 4678
Q ss_pred EEECCCcc
Q 035621 299 IWEIEKRQ 306 (387)
Q Consensus 299 iwd~~~~~ 306 (387)
+||..+++
T Consensus 507 ~yd~~~~~ 514 (534)
T PHA03098 507 VYDDKTNT 514 (534)
T ss_pred EEeCCCCE
Confidence 88877664
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.05 E-value=0.56 Score=37.26 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=66.9
Q ss_pred ceeEEEeCCCCCeEEEE-ccCCcEEEEec--cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621 224 AIMGLALDPTETDFFAA-GSDGLIYKGLL--KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~-~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
-.+.++|+.+.+.+... +.+-.|.-||. .++..........+...........-.++...+|.+.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34678898887666554 45777867774 4433221111111111000111223445566788888888889999999
Q ss_pred ECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621 301 EIEKRQVVMVLKNELAGSISEMVIATGIGGS 331 (387)
Q Consensus 301 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 331 (387)
|..+|+.+.+++-... .+++.+|....-+.
T Consensus 239 dp~tGK~L~eiklPt~-qitsccFgGkn~d~ 268 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTP-QITSCCFGGKNLDI 268 (310)
T ss_pred CCCCCcEEEEEEcCCC-ceEEEEecCCCccE
Confidence 9999999999987744 88888886544343
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.04 E-value=0.49 Score=42.91 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=86.9
Q ss_pred CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCcc
Q 035621 84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD----GSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~ 157 (387)
.++..++|....+.+++.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++......|.+|-+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 5788888875444444432 233333322 2233333 45889999984 335666667789999988311
Q ss_pred cccCCCCCCCCccceEeeecc-CC--C--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEecCCceeEEEe
Q 035621 158 VDEHTDDKNPDDLMLQKFVAH-ND--S--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTFPCAIMGLAL 230 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~--~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~ 230 (387)
.. ...+.+.....+ .. + -....|+|.. ..|+.-.....-.+++++.. +....+...+.|.|.+|
T Consensus 93 ~~-------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 93 TT-------ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred cc-------ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 00 111122111111 11 1 1346788875 66666555544456666543 33444567889999999
Q ss_pred CCCCCeEEEE-ccCCcEEEEec
Q 035621 231 DPTETDFFAA-GSDGLIYKGLL 251 (387)
Q Consensus 231 ~~~~~~l~~~-~~dg~i~i~d~ 251 (387)
.+||+.|+++ +..=.-++||-
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecC
Confidence 9999888776 34445677875
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.03 E-value=0.43 Score=43.27 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=74.9
Q ss_pred ccCCCeEEEEEeeCCCC--ceEEEEeCCCcEEEEeCCC-----CcEEEEEe------cCCceeEEEeCCCCCeEEEEccC
Q 035621 177 AHNDSVTAITCCIGSFN--SIIISCSMDCTCKFWRLLN-----GTHLSTVT------FPCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 177 ~~~~~i~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~-----~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d 243 (387)
+.-..|..+.|.|-... ..+++......|.+|.+.. .+.+.... .+--...+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456888999886421 2355555678899998862 22222211 12234578999999998887776
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIE 303 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 303 (387)
..-.+++..... ..+..-. ...+.|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus 134 dvSV~~sV~~d~-------srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDS-------SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCC-------ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 665666665522 1122212 4578899999999999887653 33346788844
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.011 Score=55.34 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=96.5
Q ss_pred ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccC------CCCCeeeEEe---ccCCCEEEEec
Q 035621 34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIP------VPEPVAPLAT---TADGSYLFTGG 102 (387)
Q Consensus 34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~ 102 (387)
+++..+.+-.++|..... ..+. -.-|.+.||++. .|+....+. ....+.-+.| -++..++..+-
T Consensus 128 ~kgf~G~v~dl~fah~~~---pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKC---PKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HhcCCCCcccccccccCC---hHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 355666677777753110 0000 123678889874 333322221 1123344444 44667788888
Q ss_pred CCCcEEEEeCCCCceeEEccCCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621 103 LSGNVYAISVPKGDILRSFSAHDKPVSCLK-----------ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
.++++++.+...... ..+.+|...+..++ .+|||+.++.++.||.++.|.+.- .......+
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi-------~g~~~~rc 274 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI-------TGKIVHRC 274 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee-------eccccHhh
Confidence 888998888754433 44556766655544 589999999999999999987621 11123445
Q ss_pred eEeeeccC-CCeEEEEEeeCCC-------CceEEEEeC-CCcEEEEeCCCCcEE
Q 035621 172 LQKFVAHN-DSVTAITCCIGSF-------NSIIISCSM-DCTCKFWRLLNGTHL 216 (387)
Q Consensus 172 ~~~~~~~~-~~i~~~~~~~~~~-------~~~l~s~~~-d~~i~iwd~~~~~~~ 216 (387)
+..++.|. .+-.|..++.... -.++++++. +..+++|.....+|+
T Consensus 275 lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 275 LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 56666666 3333332322210 023444443 567889987777776
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.087 Score=51.07 Aligned_cols=187 Identities=16% Similarity=0.095 Sum_probs=103.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC----CccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCc
Q 035621 130 CLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP----DDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCT 204 (387)
Q Consensus 130 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~ 204 (387)
.++.++.-..+++++..+.+.++-..++.......... .......+..|. -++..+.+.++..-..++..+.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 34555544556666666666666543322111110000 111112233332 3455555555542234445555557
Q ss_pred EEEEeCCCCcEEEE------------EecCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621 205 CKFWRLLNGTHLST------------VTFPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR 271 (387)
Q Consensus 205 i~iwd~~~~~~~~~------------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 271 (387)
|..||+++...... +.......++.|+|.- ...++...|+.|.+..+..... .... ..
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~--------~v~s-~p 196 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ--------NVTS-FP 196 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh--------hhcc-cC
Confidence 89999986432221 1123456788888864 3455666788888877654211 1111 13
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee---cccCCCceeEEEEe
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK---NELAGSISEMVIAT 326 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~ 326 (387)
-....++++|+|.|+.++.|-..|++.-|... .+....+. ......|.+|+|-.
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec
Confidence 45678999999999999999999999988754 33333332 23346777776543
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.96 E-value=0.43 Score=44.43 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=73.3
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 162 (387)
+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |+++.+++.+....|.+|.-.+.....
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~- 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN- 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc-
Confidence 3444445555555554455689999998887544332 346789999885 588999999999999998653321111
Q ss_pred CCCCCCccceEee--eccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621 163 DDKNPDDLMLQKF--VAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
..+...+++.+ ..|+ .+|.+..|.+++ . ++.|+ ...+.|+|-
T Consensus 111 --~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~-LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 --KGPSWAPIRKIDISSHTPHPIGDSIWLKDG--T-LVVGS-GNQLFVFDK 155 (631)
T ss_pred --CCcccceeEEEEeecCCCCCccceeEecCC--e-EEEEe-CCEEEEECC
Confidence 11223333333 3333 578899998874 4 44443 356888864
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.92 E-value=0.37 Score=42.78 Aligned_cols=145 Identities=7% Similarity=0.099 Sum_probs=91.9
Q ss_pred CCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCCCCeEEEEEccC-CCcccccC
Q 035621 7 CNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTGSGSVHLYNLWS-STPLHNIP 81 (387)
Q Consensus 7 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~ 81 (387)
|..+| ..|+....++--|++.|+.+.++..|..- -+.|.|...+ ....-+.|-.+..|.-.|..- |..+...+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 44444 44666677888899999999999877764 5677774321 112222244555555445432 22222222
Q ss_pred -----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 82 -----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 82 -----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
......+..-. ...++++++..|.|++||--.-+....+.+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 22233333333 3458999999999999996444444556677889999999999998887776 467777764
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.79 Score=37.65 Aligned_cols=220 Identities=10% Similarity=0.083 Sum_probs=119.3
Q ss_pred eEEEEEccCCCcccccCCCC---CeeeEEeccCCCEEEEecCC-----CcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC
Q 035621 65 SVHLYNLWSSTPLHNIPVPE---PVAPLATTADGSYLFTGGLS-----GNVYAISVPKG-DILRSFSAHDKPVSCLKISP 135 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~ 135 (387)
...++|.+..+....+...+ -.-.=.|+|||.+|+..-.| |.|-+||.+.+ +.+..+..|.-....+.+.+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 35678888777665554221 22345799999999876433 68999998754 55667888888889999999
Q ss_pred CCCEEEEEeCCCcEEEE-eCCcc-cccCCCC------CCCCccce--Eeee--ccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 136 DGSLLISGGDDGVIATV-PIFQL-VDEHTDD------KNPDDLML--QKFV--AHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iw-d~~~~-~~~~~~~------~~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
||+.++.+. |-|..- |.... .+...-+ ...++..+ .++. .+.-.|..++.-+++ ..++.+-..|
T Consensus 172 DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg--tvwfgcQy~G 247 (366)
T COG3490 172 DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG--TVWFGCQYRG 247 (366)
T ss_pred CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC--cEEEEEEeeC
Confidence 999888764 445444 22110 0000000 00011111 1111 233455556554442 4443332222
Q ss_pred c-----EEEEeCCCCcEEEEEec--------CCceeEEEeCCCCCeEEEEccC-CcEEEEeccccccccccccceeEeec
Q 035621 204 T-----CKFWRLLNGTHLSTVTF--------PCAIMGLALDPTETDFFAAGSD-GLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 204 ~-----i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
. -.+=-...++++.-+.. ...|-+++.+.+...++..+-. +...+||..++.......
T Consensus 248 ~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~-------- 319 (366)
T COG3490 248 PRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA-------- 319 (366)
T ss_pred CCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--------
Confidence 1 11111223444444432 3467788988877777777664 456789998854332211
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
-.....++ +...-++..+.+|.+.++.
T Consensus 320 ---l~daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 320 ---LPDAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ---ccccccce--eccCceEEecCCceEEecc
Confidence 01111222 2333455556778888774
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=1.6 Score=40.97 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=46.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
.+.+..+..||+.++|+-=..+|.|.+-+.+..+.+..+.-....++..+++....
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 35678899999999999999999999999999999988885555567778776544
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=95.60 E-value=1.7 Score=39.93 Aligned_cols=184 Identities=9% Similarity=0.007 Sum_probs=82.9
Q ss_pred CCCEEEEecCCC-----cEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccccCCCC
Q 035621 94 DGSYLFTGGLSG-----NVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQLVDEHTDD 164 (387)
Q Consensus 94 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 164 (387)
++..+++|+.++ .+..||..+.+-.. .+.........+. -++...+.|+.++ .+..||....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n------- 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA------- 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC-------
Confidence 455667776543 46778887654322 1211111122222 2677777777543 4666765221
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEE
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFA 239 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 239 (387)
....+..+....... +++. -+ +.+.+.|+.++ .+..||.++.+-...-.. +..-.+++ .-+++..+.
T Consensus 342 ---~W~~~~~l~~~r~~~-~~~~-~~--g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~ 413 (480)
T PHA02790 342 ---AWVNMPSLLKPRCNP-AVAS-IN--NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLV 413 (480)
T ss_pred ---eEEECCCCCCCCccc-EEEE-EC--CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEE
Confidence 111111111111111 1221 22 36777777553 467788766532221111 11111121 234555555
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCcc
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQ 306 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 306 (387)
| |.+.+||..+........ ........ +++ .-+++..+.||.+ .++..||..+++
T Consensus 414 G---G~~e~ydp~~~~W~~~~~-------m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 414 G---RNAEFYCESSNTWTLIDD-------PIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred C---CceEEecCCCCcEeEcCC-------CCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 5 346778876543322111 10111111 222 2367788888764 346677766554
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.60 E-value=1.2 Score=37.68 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
..+..+..+++|++++++.......-||.-...-...-+.-...|..|.|.|++.+.+.+ ..|.|+.=+.....+.-
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w-- 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW-- 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc--
Confidence 567888889999999988766666677753322222222346789999999998765544 88888876621100000
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEE
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~ 239 (387)
.+.........-.+..+++.++. ...++|+ .|.+ +.....|+.-...+ .+.....+.|.++. .-++
T Consensus 222 -----~~~~~~~~~~~~~~ld~a~~~~~--~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~ 291 (302)
T PF14870_consen 222 -----SEPIIPIKTNGYGILDLAYRPPN--EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV 291 (302)
T ss_dssp --------B-TTSS--S-EEEEEESSSS---EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred -----ccccCCcccCceeeEEEEecCCC--CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence 00011111222346778887653 5555554 5544 44555666555544 35668888887654 4445
Q ss_pred EccCCcEEEE
Q 035621 240 AGSDGLIYKG 249 (387)
Q Consensus 240 ~~~dg~i~i~ 249 (387)
-+.+|.+.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 5567766544
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.41 E-value=0.0063 Score=56.89 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=77.6
Q ss_pred CcEEEEeCC--CCceeEec-----cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeE-
Q 035621 18 GPITAYNPS--SGAILAHF-----SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPL- 89 (387)
Q Consensus 18 g~i~iwd~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~- 89 (387)
|.+.||++. .|+....+ ......+.-+.|.|-- ....++..+..++.+++.++++...-....|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHH
Confidence 667888874 45443333 2233345556666510 01123334667888888877654332222244333332
Q ss_pred ----------EeccCCCEEEEecCCCcEEEEeC-----CCCceeEEccCCC-CCeEEEEEcCCCC---------EEEEEe
Q 035621 90 ----------ATTADGSYLFTGGLSGNVYAISV-----PKGDILRSFSAHD-KPVSCLKISPDGS---------LLISGG 144 (387)
Q Consensus 90 ----------~~~~~~~~l~~~~~dg~i~i~d~-----~~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~~~ 144 (387)
..+|||..++.+..||.++.|.+ ...++.+..+.|. .+-.|.-++.+.. ++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 36899999999999998888765 3345666777777 3444444543321 334433
Q ss_pred -CCCcEEEEeC
Q 035621 145 -DDGVIATVPI 154 (387)
Q Consensus 145 -~dg~i~iwd~ 154 (387)
.+..+++|..
T Consensus 312 d~nre~k~w~~ 322 (1283)
T KOG1916|consen 312 DVNREEKFWAE 322 (1283)
T ss_pred cCCcceeEeec
Confidence 4566888876
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.31 E-value=0.52 Score=33.94 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=71.1
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCc--------eeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCC
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGA--------ILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
|.....-|+.++.-|+|.|+++.... .+..+. -...|++++-.+= ..-....|+ -+....+..||+..+
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~Ll-iGt~t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLL-IGTQTSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEE-EeccceEEEEEcccC
Confidence 45555678888889999999976332 233332 3445677654430 000011122 345667999999998
Q ss_pred CcccccCCCCCeeeEEecc----CCCEEEEecCCCcEEEEeCCCCceeEEc
Q 035621 75 TPLHNIPVPEPVAPLATTA----DGSYLFTGGLSGNVYAISVPKGDILRSF 121 (387)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 121 (387)
..+.....++.+.++.+-. +..++++ +.+..|.-||.+..+...+.
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 8887777788888888743 2334444 45677888887655554443
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.31 E-value=1.7 Score=37.62 Aligned_cols=244 Identities=16% Similarity=0.169 Sum_probs=114.7
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---cccc-----CCCCCeeeEEeccC---CCEEEEecCC-----
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNI-----PVPEPVAPLATTAD---GSYLFTGGLS----- 104 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~-----~~~~~v~~~~~~~~---~~~l~~~~~d----- 104 (387)
.++|+|.|++.+.. +...|.|++++ ..+.. +..+ ........++++|+ ..+|++....
T Consensus 4 P~~~a~~pdG~l~v-----~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-----AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEEETTSCEEE-----EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred ceEEEEeCCCcEEE-----EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 57899999765444 35689999998 33332 2222 13356889999994 3444443321
Q ss_pred ----CcEEEEeCCCC-------c-eeEEccC---CCCCeEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCc
Q 035621 105 ----GNVYAISVPKG-------D-ILRSFSA---HDKPVSCLKISPDGSLLISGGDDGV-------------IATVPIFQ 156 (387)
Q Consensus 105 ----g~i~i~d~~~~-------~-~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~ 156 (387)
..|.-|....+ + .+..+.. ....-..|+|.|||.+.++.+..+. |.-.+...
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 13444444333 1 1112222 2344567999999977666655433 21112110
Q ss_pred ccccCCCCCC--CCccceEeeeccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCC--------------------
Q 035621 157 LVDEHTDDKN--PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNG-------------------- 213 (387)
Q Consensus 157 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~-------------------- 213 (387)
.......... .....+ --.++. ....++|.|.. +.++++= +.++.=.|.-+..+
T Consensus 158 ~~p~dnP~~~~~~~~~~i-~A~GlR-N~~~~~~d~~t-g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEI-YAYGLR-NPFGLAFDPNT-GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SB-TTSTTTTSTTSTTTE-EEE--S-EEEEEEEETTT-TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred cCCCCCccccCCCceEEE-EEeCCC-ccccEEEECCC-CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 0000000000 000011 111222 23467887762 3444332 22222122112111
Q ss_pred ---------cEEEEEecCCceeEEEeCCC-------CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621 214 ---------THLSTVTFPCAIMGLALDPT-------ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV 277 (387)
Q Consensus 214 ---------~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (387)
.+...+.++..+..+.|.+. |.++++.-..+.|....+...... .....+......++.
T Consensus 235 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~ 309 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPR 309 (331)
T ss_dssp TGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EE
T ss_pred cccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCce
Confidence 12333444556777777643 345555555678887777643221 112222334555899
Q ss_pred EEEEecCCCEEEEEeCCCcEE
Q 035621 278 SVMMMNEGKNLVSAAEDGSVY 298 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~~dg~i~ 298 (387)
.+++.|||.++++-+.+|.|+
T Consensus 310 ~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTSEEEEEE-TTTTEE
T ss_pred EEEEcCCCeEEEEECCCCeEe
Confidence 999999999888888888774
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.28 E-value=1.9 Score=38.00 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCeeeEEeccCCCEEEEec-----------CCC-cEEEEeCCC--Cc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621 84 EPVAPLATTADGSYLFTGG-----------LSG-NVYAISVPK--GD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
.....++|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4566788999988776642 223 677776433 22 223343334456889999888 44444443
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEEEeCC-------------------Cc
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIISCSMD-------------------CT 204 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d-------------------~~ 204 (387)
..++.|........ ......+..+.. +......+++.|++ .+.++-+.. |.
T Consensus 92 i~~~~d~~gdg~ad----~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 92 ILFLRDKDGDDKAD----GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred EEEEeCCCCCCCCC----CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCce
Confidence 33333442100000 001111122222 23446678888874 555544311 33
Q ss_pred EEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 205 CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
|.-+|...++ +..+. .......++|+|+|+.+++-..
T Consensus 166 i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 166 LFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence 4455544433 22333 2344678999999988766443
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.8 Score=35.74 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=62.5
Q ss_pred CCcEEEeeCCC--CcEEEEeCCCCceeEeccCCCCCce--eEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621 7 CNEVILTSSPE--GPITAYNPSSGAILAHFSGSRSPRR--GLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV 82 (387)
Q Consensus 7 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~ 82 (387)
+|.++.+.+.- ..|++||+.+|+.+.+-+-....+. .+.-..+..+.. .-.+|....+|..+-+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~L-----Tw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQL-----TWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEE-----EeccceeEEEChHHhhhhccccc
Confidence 34556655533 3599999999988765542211111 122223333332 23678888899988888888887
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKG 115 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 115 (387)
++.=..++. |++.|+.+.....++.-|.++-
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence 766665554 5555777666667777776543
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.18 E-value=1.6 Score=36.44 Aligned_cols=218 Identities=16% Similarity=0.205 Sum_probs=122.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC------CC-ceeEeccC-----CCCCceeEEEcCccce--------eeeccccCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS------SG-AILAHFSG-----SRSPRRGLTFAGKPFI--------AASHISPTT 61 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~--------~~~~~~~~~ 61 (387)
|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+....+ ....++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5789988888887788899999986 12 22334432 2335788888853322 223355688
Q ss_pred CCCeEEEEEccCCCc-----ccccC--CCCC-eeeEEecc--CCCEEEEec-CCCcEEEEeCCCCceeE--Ecc-----C
Q 035621 62 GSGSVHLYNLWSSTP-----LHNIP--VPEP-VAPLATTA--DGSYLFTGG-LSGNVYAISVPKGDILR--SFS-----A 123 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~-----~~~~~--~~~~-v~~~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~-----~ 123 (387)
.||+|.-|...-+.. ...+. .... -..+++.. .+.+|+.+. .+++|.+||-.-.+... .+. .
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPa 187 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPA 187 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCC
Confidence 999999998533222 11122 1122 33455543 356666654 67889999853222110 011 0
Q ss_pred CCCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeC
Q 035621 124 HDKP-----------VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIG 190 (387)
Q Consensus 124 ~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~ 190 (387)
.-.+ |+-..-.++.+.=+.+..-|.|-+||+ .+..++++. +.-..-+.|+..|.
T Consensus 188 gyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-------------~G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 188 GYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-------------NGQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-------------CCcEEEEeccCCcccCCceeeeChh
Confidence 0000 111111222222233344478888887 455555552 22234456666554
Q ss_pred CC----CceEEEEeCCCcEEEEeCCCCcEEEEEecC-------CceeEEEeCC
Q 035621 191 SF----NSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------CAIMGLALDP 232 (387)
Q Consensus 191 ~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~ 232 (387)
.. +.+|+---.||+|..||..+++.+-.+... ...+.++|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 32 466776667999999999999887777622 3456777764
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.05 E-value=1.9 Score=36.58 Aligned_cols=227 Identities=15% Similarity=0.185 Sum_probs=101.6
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD 116 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 116 (387)
..++.|..+..+. ++..+ +.+...+.++.-..+. .+.....+....++..++++ ..|.|..=. ..|+
T Consensus 64 l~~I~f~~~~g~i------vG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~-DgG~ 134 (302)
T PF14870_consen 64 LNSISFDGNEGWI------VGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTT-DGGK 134 (302)
T ss_dssp EEEEEEETTEEEE------EEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEES-STTS
T ss_pred EEEEEecCCceEE------EcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeC-CCCC
Confidence 5567776543222 22333 3334444444433332 23334444444444444443 445443322 2332
Q ss_pred e-eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 117 I-LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 117 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
. ......-.+.+..+.-+++|++++++..-....-||--+ ..-...-..-...|..+.|.|++ .+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~------------~~w~~~~r~~~~riq~~gf~~~~--~l 200 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ------------TTWQPHNRNSSRRIQSMGFSPDG--NL 200 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-------------SS-EEEE--SSS-EEEEEE-TTS---E
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC------------ccceEEccCccceehhceecCCC--CE
Confidence 2 222334457788999999999888887766666776521 11111112245789999999884 55
Q ss_pred EEEEeCCCcEEEEeC-CCCcEEEE--Ee---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621 196 IISCSMDCTCKFWRL-LNGTHLST--VT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 196 l~s~~~d~~i~iwd~-~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
.+. ...|.|++=+. ...+.... .. ....+..++|.+++...++|+. |.+.+ ....+.... .....
T Consensus 201 w~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~------~~~~~ 271 (302)
T PF14870_consen 201 WML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQ------KDRVG 271 (302)
T ss_dssp EEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-E------E-GGG
T ss_pred EEE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccce------ECccc
Confidence 443 47888888772 22222111 11 1234789999998776666554 44432 222221111 11111
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW 300 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 300 (387)
..-......+.|.++.+-++.| .+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 1234557888887665556655 78877655
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.05 E-value=1.1 Score=42.44 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=92.6
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeE------Ecc----------------CCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILR------SFS----------------AHDKPVSCLKISP--DGSLLISGGDDGVIA 150 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 150 (387)
.++++++. .+.|.||++....... .+. .....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777764 6789999875332110 110 0112345554433 445899999999999
Q ss_pred EEeCCcccccCCCC----C----CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--c--EEEE
Q 035621 151 TVPIFQLVDEHTDD----K----NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--T--HLST 218 (387)
Q Consensus 151 iwd~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~--~~~~ 218 (387)
+|.+.......... . ...-.+...+. -....++++++.....+++|.++....|.||-+... + ....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 99875432111000 0 01111222232 344788999982222478888888888888765432 1 1113
Q ss_pred EecCCceeEEEeCCCC---C---eEEEEccCCcEEEEecc
Q 035621 219 VTFPCAIMGLALDPTE---T---DFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 219 ~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~~ 252 (387)
..+...|.+++|-++. . .+++++-.|.+.+|++.
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 3466788899998754 2 67777889999999884
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.02 E-value=2.1 Score=37.08 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=115.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCce---eEec----cCCCCCceeEEEcCc-----cceeeecc---ccCCCCCeE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAI---LAHF----SGSRSPRRGLTFAGK-----PFIAASHI---SPTTGSGSV 66 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~-----~~~~~~~~---~~~~~d~~v 66 (387)
|+|.|||+++++-- .|.|++++ .++.. +..+ .........++++|+ ..+....- ..+.....|
T Consensus 7 ~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v 84 (331)
T PF07995_consen 7 MAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV 84 (331)
T ss_dssp EEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred EEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence 68999998877654 89999999 44443 2222 223445788999993 22222110 001112344
Q ss_pred EEEEccCC-------Ccc-cccC----CCCCeeeEEeccCCCEEEEecCCCc-------------EEEEeCCCCce----
Q 035621 67 HLYNLWSS-------TPL-HNIP----VPEPVAPLATTADGSYLFTGGLSGN-------------VYAISVPKGDI---- 117 (387)
Q Consensus 67 ~vw~~~~~-------~~~-~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~---- 117 (387)
.-|....+ +.+ .... ....-..|.|.|||.+.++.+..+. |.-.+. +++.
T Consensus 85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p~dn 163 (331)
T PF07995_consen 85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIPADN 163 (331)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-TTS
T ss_pred EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCCCCC
Confidence 44544433 001 1111 1234567999999976665543332 222232 1110
Q ss_pred ---------eEEc-cCCCCCeEEEEEcCC-CCEEEEE-eCCCcEEEEeCCcc----cccCC-------------CCCCCC
Q 035621 118 ---------LRSF-SAHDKPVSCLKISPD-GSLLISG-GDDGVIATVPIFQL----VDEHT-------------DDKNPD 168 (387)
Q Consensus 118 ---------~~~~-~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~----~~~~~-------------~~~~~~ 168 (387)
...+ .++. ....++|+|. +++.++= +.++.=.|--+... |.... ......
T Consensus 164 P~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF07995_consen 164 PFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGF 242 (331)
T ss_dssp TTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS
T ss_pred ccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCc
Confidence 0001 1222 2457899998 5544331 22222222222111 01000 000011
Q ss_pred ccceEeeeccCCCeEEEEEeeCC-----CCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCCCCeEE
Q 035621 169 DLMLQKFVAHNDSVTAITCCIGS-----FNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~ 238 (387)
..+...+..| ..+..+.|.... .+.+|++.-..+.|....+.....+.... ....+..+++.|||.+++
T Consensus 243 ~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 243 VPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp ---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred CccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 2344445444 556667665332 24566666666788888887554333222 234789999999999988
Q ss_pred EEccCCcEE
Q 035621 239 AAGSDGLIY 247 (387)
Q Consensus 239 ~~~~dg~i~ 247 (387)
+...+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 888888876
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.94 E-value=1.5 Score=42.20 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=18.6
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
-.|..+.+++++ .+++..|..| |.|..+
T Consensus 85 f~v~~i~~n~~g--~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTG--SLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCC--CEEEEEcCCc-EEEEEe
Confidence 357778888775 7777777655 444444
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=94.90 E-value=3.1 Score=38.30 Aligned_cols=137 Identities=12% Similarity=-0.032 Sum_probs=63.8
Q ss_pred CCcEEEeeCCCC-----cEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcc
Q 035621 7 CNEVILTSSPEG-----PITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPL 77 (387)
Q Consensus 7 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~ 77 (387)
++.++++|+.++ .+..||..+++... .+...... .+++...+..+.. |+.+ ..+..||..+++-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYvi-----GG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVV-----GGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEE-----CCcCCCCceEEEECCCCeEE
Confidence 445667777543 46778887665433 22211111 1222223222222 4432 45778887655432
Q ss_pred cccCCCCCeee-EEeccCCCEEEEecCCC---cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621 78 HNIPVPEPVAP-LATTADGSYLFTGGLSG---NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDGVIAT 151 (387)
Q Consensus 78 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 151 (387)
..-+.+.+... ....-+|+..+.||.++ .+..||.++.+-... +.........+.+ +++..+.|+ .+.+
T Consensus 345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~GG---~~e~ 419 (480)
T PHA02790 345 NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVGR---NAEF 419 (480)
T ss_pred ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEECC---ceEE
Confidence 22222222211 22233677777777553 477888766543221 1111111122222 556666663 4667
Q ss_pred EeC
Q 035621 152 VPI 154 (387)
Q Consensus 152 wd~ 154 (387)
||.
T Consensus 420 ydp 422 (480)
T PHA02790 420 YCE 422 (480)
T ss_pred ecC
Confidence 776
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.83 E-value=1.3 Score=38.97 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=73.6
Q ss_pred ccccCCCcEEEeeC-----------CCC-cEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621 2 LHHLPCNEVILTSS-----------PEG-PITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65 (387)
Q Consensus 2 l~~s~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 65 (387)
|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+.......+.+++.+++.+.+ ... .
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~------~~~-~ 91 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVA------TPP-D 91 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEe------CCC-e
Confidence 67899999877742 223 677776543 332 233433344568888888764432 233 3
Q ss_pred EEEE-EccCC-----Cc---ccccCC-----CCCeeeEEeccCCCEEEEecCC-------------------CcEEEEeC
Q 035621 66 VHLY-NLWSS-----TP---LHNIPV-----PEPVAPLATTADGSYLFTGGLS-------------------GNVYAISV 112 (387)
Q Consensus 66 v~vw-~~~~~-----~~---~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~ 112 (387)
|..+ +.+.. +. ...+.. ......++|.|||.+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4433 43211 11 111221 2347789999999866644421 34555565
Q ss_pred CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621 113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
.+++. ..+...-.....++|+|+|+++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 54443 22322223456889999988776544
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.57 E-value=0.0099 Score=51.82 Aligned_cols=139 Identities=11% Similarity=0.167 Sum_probs=94.6
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
.|-|.+.-++.++.+..+..||- .++.+.... .++....++|..+.... ++.+-..+.+.+|++.+... +++.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvl---avlAek~~piylwd~n~eyt-qqLE~ 114 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVL---AVLAEKTGPIYLWDVNSEYT-QQLES 114 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchh---hhhhhcCCCeeechhhhhhH-HHHhc
Confidence 56777777888888889999994 566555443 33445566776533222 22256788999999965422 2222
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
....-.-+.|++....++.+...|.+.+++..+.+.+.....|...++++++.+.+. .+.++.|..
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 222223378999889999999999999999888777666666999999999998764 455555543
No 434
>PRK10115 protease 2; Provisional
Probab=94.56 E-value=4.8 Score=38.92 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=44.8
Q ss_pred CeeeEEeccCCCEEEEecCC-C----cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEe
Q 035621 85 PVAPLATTADGSYLFTGGLS-G----NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD------GVIATVP 153 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd 153 (387)
.+..+.++|||++|+.+... | .|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 2 689999988864322211111 469999999877665443 2466666
Q ss_pred C
Q 035621 154 I 154 (387)
Q Consensus 154 ~ 154 (387)
+
T Consensus 206 l 206 (686)
T PRK10115 206 I 206 (686)
T ss_pred C
Confidence 6
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.53 E-value=0.23 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=25.9
Q ss_pred ccEEEEEEecCC---CEEEEEeCCCcEEEEECCCc
Q 035621 274 GVVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 274 ~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~ 305 (387)
+.|.++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 358899999854 48888878899999999853
No 436
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.48 E-value=5.2 Score=39.03 Aligned_cols=276 Identities=12% Similarity=0.072 Sum_probs=142.7
Q ss_pred cCCCcEEEeeCCCCcEEEEeCC-CCceeEe------ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--
Q 035621 5 LPCNEVILTSSPEGPITAYNPS-SGAILAH------FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-- 75 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-- 75 (387)
+++|.+.+.|..+|.+...-+. +++.... +-+...-..|+.+-+++.+. .|+.-|.=++-.+.+..
T Consensus 266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lF-----vGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 266 DLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLF-----VGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEE-----EeccCCceeeEEccccCCC
Confidence 4567777777778877665444 3332222 22333334555555544433 25665555666554432
Q ss_pred -----cccccCCCCCeeeEEeccC----CCEEEEec---CCCcEEEEeCCCC-ce--eEEccCCCCCeEEEE--EcCC-C
Q 035621 76 -----PLHNIPVPEPVAPLATTAD----GSYLFTGG---LSGNVYAISVPKG-DI--LRSFSAHDKPVSCLK--ISPD-G 137 (387)
Q Consensus 76 -----~~~~~~~~~~v~~~~~~~~----~~~l~~~~---~dg~i~i~d~~~~-~~--~~~~~~~~~~v~~~~--~~~~-~ 137 (387)
.+..+..-.|+..++.-.. +..+++++ .||++++....=+ .. ...+.+ -..+..+. ++++ .
T Consensus 341 gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d 419 (1096)
T KOG1897|consen 341 GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD 419 (1096)
T ss_pred CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence 2244445578888877542 23455543 6789999864322 11 122333 34566666 4332 2
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS 217 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 217 (387)
++++.+-.+- -++..+.. ........+-......+.++.-. ++.|+-.. ...||+++-. ....
T Consensus 420 ~ylvlsf~~e-Trvl~i~~------------e~ee~~~~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~ 482 (1096)
T KOG1897|consen 420 NYLVLSFISE-TRVLNISE------------EVEETEDPGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRS 482 (1096)
T ss_pred cEEEEEeccc-eEEEEEcc------------ceEEeccccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhh
Confidence 2555544433 34444411 11111112222233334433332 23333332 2457777644 3444
Q ss_pred EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC------CEEEEE
Q 035621 218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG------KNLVSA 291 (387)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~s~ 291 (387)
....+..++....+.+...++.++.++.+...++........ ....-...|.|+.++|-| ++++.|
T Consensus 483 ~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~--------~~~~~e~evaCLDisp~~d~~~~s~~~aVG 554 (1096)
T KOG1897|consen 483 EWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV--------SHKEFEYEVACLDISPLGDAPNKSRLLAVG 554 (1096)
T ss_pred cccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeee--------eeheecceeEEEecccCCCCCCcceEEEEE
Confidence 555666666666666777888888888888777766431111 011235678999998742 278888
Q ss_pred eCCCcEEE-EECCCccEEEEe
Q 035621 292 AEDGSVYI-WEIEKRQVVMVL 311 (387)
Q Consensus 292 ~~dg~i~i-wd~~~~~~~~~~ 311 (387)
..+..+.+ --..+...+...
T Consensus 555 ~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 555 LWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred eecceEEEEEECCCcceeeee
Confidence 87765544 344455554444
No 437
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.39 E-value=0.59 Score=40.95 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=96.8
Q ss_pred CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEcc-CCCC----CeE-EEEEcCCCCEEEEEeCCCcEEEE-eC
Q 035621 83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFS-AHDK----PVS-CLKISPDGSLLISGGDDGVIATV-PI 154 (387)
Q Consensus 83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~iw-d~ 154 (387)
.+.+..+-..|||+.++.-+. .++.++++.+.... +++- ...+ .|+ .+..-..|.-+++++.||.|.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 467888899999999887655 67888888655322 1111 1111 122 11222245668888999988777 44
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
++... +.-..++.++-...++..+ .|+.+.+-+++-+..|++..+.....+.+-.-..-..+.-++++|.+
T Consensus 299 r~~~~-------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQ-------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ 369 (733)
T ss_pred ecCCC-------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc
Confidence 32111 2222333343334445444 35555577888888999988875544443332333467778999999
Q ss_pred CeEEEEccCCcEEEEeccc
Q 035621 235 TDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~ 253 (387)
.++++- ..|.|+++.+++
T Consensus 370 ~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred chheee-cCCceEEEEecC
Confidence 988764 356788887765
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.36 E-value=0.26 Score=27.47 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=26.8
Q ss_pred CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCC
Q 035621 180 DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 180 ~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~ 212 (387)
+.+.++.|+|.+. ..+|+.+-.-+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3678999998652 26888888889999999995
No 439
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.22 E-value=2.7 Score=34.78 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=85.9
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe-CCCCcee
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS-VPKGDIL 118 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~ 118 (387)
.+.+.+++++....+... .......+.++. .+...........+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVS-EGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEE-EcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 578889998654333211 112333444444 444333333445788889999988777766666666663 3333222
Q ss_pred -EEcc--CCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC
Q 035621 119 -RSFS--AHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF 192 (387)
Q Consensus 119 -~~~~--~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (387)
..+. .-...|+.++++|||..++... .++.|.+=-+...... ..................+..+.|.++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---~~~~l~~~~~~~~~~~~~v~~v~W~~~~- 177 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---VPRRLTGPRRVAPPLLSDVTDVAWSDDS- 177 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---CcceeccceEecccccCcceeeeecCCC-
Confidence 1121 1122899999999999877665 3467776655321111 0001112222223345688899998874
Q ss_pred CceEEEEeCC
Q 035621 193 NSIIISCSMD 202 (387)
Q Consensus 193 ~~~l~s~~~d 202 (387)
.+++.+...
T Consensus 178 -~L~V~~~~~ 186 (253)
T PF10647_consen 178 -TLVVLGRSA 186 (253)
T ss_pred -EEEEEeCCC
Confidence 555555443
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.21 E-value=2.1 Score=33.81 Aligned_cols=110 Identities=10% Similarity=0.167 Sum_probs=67.2
Q ss_pred eEEEEeCCCcEEEEeCC--CCcEEEEEecCCceeEEEeCCCCCeEEEEccC---C---cEEEE-ecccc----cccc--c
Q 035621 195 IIISCSMDCTCKFWRLL--NGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---G---LIYKG-LLKYQ----SRQQ--M 259 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~~----~~~~--~ 259 (387)
.|..+...+.|.+|++. ..+.+.+|..-+.|..+.++..|+++++--.+ . .+++| +++.. .+.. .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44333556789999988 45567778777999999999999999996442 2 44544 23221 0000 0
Q ss_pred -----------ccc--ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 260 -----------HKG--QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 260 -----------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
... -.+.+. .-..++.+++..|-..-|+.|+ ++.+.+|.+.....
T Consensus 110 aG~~v~~~~~~~~~~qleiiEl--Pl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIEL--PLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred cccccccCCCCccccceEEEEe--cCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 000 111122 2345677888887655566665 45799998765543
No 441
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=2 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCC
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPS 26 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~ 26 (387)
+++|+|...++|.|+.+|.|++|-..
T Consensus 40 ~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 40 ALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred ceeeccccceEEEEEecccEEEeccc
Confidence 47899999999999999999999864
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.10 E-value=1.7 Score=38.94 Aligned_cols=137 Identities=11% Similarity=0.075 Sum_probs=82.6
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC------CceEEEEeCCCcEEEEeCC-CCc
Q 035621 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF------NSIIISCSMDCTCKFWRLL-NGT 214 (387)
Q Consensus 142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~l~s~~~d~~i~iwd~~-~~~ 214 (387)
.|+....++-.|+ ..++.+..+..|... -+.+.|... .+.|+--| +..|.-.|.+ .|.
T Consensus 485 dg~~~~kLykmDI------------ErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN 549 (776)
T COG5167 485 DGGERDKLYKMDI------------ERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN 549 (776)
T ss_pred cCCCcccceeeec------------ccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence 3444455555566 566677777766654 345555421 23444444 4444444544 344
Q ss_pred EEEEEecCCceeEEEeCC----CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 215 HLSTVTFPCAIMGLALDP----TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
.+.........+.-.|+. ...++++++..|.|++||.-. ......+.+-...|..+..+.+|+++++
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig---------~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG---------KRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhc---------chhhhcCcccccceeeeEeecCCcEEEE
Confidence 444444444444444443 346999999999999999753 2233334466778999999999998887
Q ss_pred EeCCCcEEEEECC
Q 035621 291 AAEDGSVYIWEIE 303 (387)
Q Consensus 291 ~~~dg~i~iwd~~ 303 (387)
.|.. .+.+-|+.
T Consensus 621 TCk~-yllL~d~~ 632 (776)
T COG5167 621 TCKN-YLLLTDVP 632 (776)
T ss_pred eecc-eEEEEecc
Confidence 6654 66676653
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.84 E-value=2.7 Score=33.28 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=89.2
Q ss_pred CEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEeCCcccccCCCCCCC
Q 035621 96 SYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG------VIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~ 167 (387)
+.|+.+...+.|.+|++. ..+....+.. -+.|..+.++..|+++++--.+. .+|+|=- |...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~N---Wr~~------ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFN---WRSQ------ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEE---hhhh------
Confidence 345444566789999987 3355666654 37899999999999999875432 3455411 1100
Q ss_pred CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 247 (387)
.....++.. ... + . -++++..+.. ...-.+-.++...++.+++-.|-...|++|+. +.+.
T Consensus 99 --------~~~~~~v~v-Ria--G--~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~ 158 (215)
T PF14761_consen 99 --------KEENSPVRV-RIA--G--H-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLV 158 (215)
T ss_pred --------cccCCcEEE-EEc--c--c-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEE
Confidence 011112211 100 0 0 1111111111 11112334456678888888887767777764 4778
Q ss_pred EEecccccccc-cccccee-Eeecccccc-cEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 248 KGLLKYQSRQQ-MHKGQEL-VTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 248 i~d~~~~~~~~-~~~~~~~-~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+|.+....... ....-.. ......|.+ .+..+++. +.|+|..+ +-.++++.+.
T Consensus 159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 88777643311 0000000 001111222 35566664 45777765 4467776543
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=4.5 Score=36.53 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=31.4
Q ss_pred cEEEEEEecCC---CEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621 275 VVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322 (387)
Q Consensus 275 ~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 322 (387)
.+..++|+|+. ..|..-+.|..||+||+.....+....+.-..+.++.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~ 217 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNV 217 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccc
Confidence 35567788764 4666677888999999888777755554433333333
No 445
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.76 E-value=6.2 Score=37.22 Aligned_cols=161 Identities=12% Similarity=0.177 Sum_probs=87.5
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee--EEcc-CCCC------CeEEEEEcCCCCEEEEEeC-CC---
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL--RSFS-AHDK------PVSCLKISPDGSLLISGGD-DG--- 147 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~------~v~~~~~~~~~~~l~~~~~-dg--- 147 (387)
+..+.+..+.|.++++.+++...+|.|.+||...+... ..++ .+.. -|..........++++.+. ++
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 35678899999999999999999999999999333221 1221 1121 1112111112345555544 33
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC- 223 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 223 (387)
..+++.+. .....+..+. .+........|+... |.+..- .+++|.+|++.+.+..+++..+.
T Consensus 207 ~ykL~~l~-----------~~~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l--~~~~i~~ysip~f~~~~tI~l~~i 272 (670)
T PF10395_consen 207 SYKLISLS-----------NESSSIFELSSTILENFGLEDSKFCYQF-GKLYQL--SKKTISSYSIPNFQIQKTISLPSI 272 (670)
T ss_pred EEEEEEec-----------cCCcceEEeehheeccCCcccceEEEeC-CEEEEE--eCCEEEEEEcCCceEEEEEEechh
Confidence 24455441 1112222222 233333344444442 333333 67899999999998888877542
Q ss_pred ------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 224 ------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 224 ------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
.+.++.- |..++++.+ .++.|++.|+......
T Consensus 273 i~~~~~~~vSl~~-~s~nRvLLs-~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 273 IDKESDDLVSLKP-PSPNRVLLS-VNNKIYLLDLKFESIL 310 (670)
T ss_pred hccccccceEeec-CCCCeEEEE-cCCEEEEEeehhhhhh
Confidence 2223322 233333333 3568999999875433
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=93.71 E-value=4.3 Score=35.27 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=74.2
Q ss_pred cccCCCcEEEeeCCCCcEEE-EeCCCCc-eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 3 HHLPCNEVILTSSPEGPITA-YNPSSGA-ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~i-wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
.+.|++.+++++.. |.+.. ++ ..++ ....-..-...++++.+.++..+.. .+..|.+.+=..+.+..-...
T Consensus 179 ~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-----vg~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 179 RRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-----LARGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred EECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEE-----EecCCEEEEccCCCCCccccc
Confidence 45677777766654 55443 22 1222 1112223345688888887543322 244565543233444332222
Q ss_pred CCC-----CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 81 PVP-----EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 81 ~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
..+ ..+..+.+.+++..++++ .+|.+. .....++.-.... .-......+.|..+++.++ .+..|.|.-|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 221 347788999887765554 567554 3344444333332 2223577888876666554 5566887766
Q ss_pred e
Q 035621 153 P 153 (387)
Q Consensus 153 d 153 (387)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 4
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.45 E-value=0.74 Score=37.07 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=57.9
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-------cccccEEEEEEecCCCEEEEEeC
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-------RHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
.+.++.. +..++.++++-+.+|.+++||+......... ..+..++. .....|..+.++.+|.-+++-+
T Consensus 11 Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls- 85 (219)
T PF07569_consen 11 LGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS- 85 (219)
T ss_pred cCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-
Confidence 3444444 4457889999999999999999986543322 11111121 3556789999998888777764
Q ss_pred CCcEEEEECCCccEEEEe
Q 035621 294 DGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 294 dg~i~iwd~~~~~~~~~~ 311 (387)
+|..+.|+.+-+.-+...
T Consensus 86 ng~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 86 NGDSYSYSPDLGCWIRVS 103 (219)
T ss_pred CCCEEEeccccceeEEec
Confidence 578999997766555433
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.43 E-value=0.51 Score=37.95 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=44.8
Q ss_pred CceEEEEeCCCcEEEEeCCCCcEEEEE---------------ecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 193 NSIIISCSMDCTCKFWRLLNGTHLSTV---------------TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
+.++++-+.+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+ +|..+.|+....
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 478999999999999999998765432 1235677888887777666544 577888877653
No 449
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.35 E-value=0.7 Score=43.33 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=45.2
Q ss_pred CCCCeEEEEccCCcEEEEeccccc----cccc--cccc----eeEeec-------ccccccEEEEEEec----CCCEEEE
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQS----RQQM--HKGQ----ELVTLA-------NRHDGVVVSVMMMN----EGKNLVS 290 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~--~~~~----~~~~~~-------~~~~~~v~~~~~s~----~~~~l~s 290 (387)
++...++++..||.+......... .... .... .+..+. ......+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888888888887776511 0000 0000 000000 01123455566655 6789999
Q ss_pred EeCCCcEEEEECCCccEEEEe
Q 035621 291 AAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 291 ~~~dg~i~iwd~~~~~~~~~~ 311 (387)
-+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997765
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=3.8 Score=41.20 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK 114 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 114 (387)
.+.....++|+|...+++.+...|.|++|-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 445677889999999999999999999997543
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=1.8 Score=43.35 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=86.7
Q ss_pred CCCCcEEEEeCCCCceeEeccCCCCCceeEEEc-Cccceee---eccccCCCCCeEEEEEccCCCcc---------cccC
Q 035621 15 SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAA---SHISPTTGSGSVHLYNLWSSTPL---------HNIP 81 (387)
Q Consensus 15 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~---------~~~~ 81 (387)
+-|+.+.+|+.+++.....+.+-...|..+..- |++-+.. .++...+.--.|.++-+.-.+.. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457899999999988888888877777777653 3221111 12222334445666654322111 1111
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeC----CCC---c-e----------------eEEcc-CCCCCeEEEEEcC
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISV----PKG---D-I----------------LRSFS-AHDKPVSCLKISP 135 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~ 135 (387)
.+-.|.|+....+|+.+++| .||. +|.+ ..+ + + +-.+. .+..+|..++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 23468899988888776665 5664 4433 111 1 0 11122 4677999999988
Q ss_pred CCCEEEEEeCCCcEEEEeCCc
Q 035621 136 DGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.-+.+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 778899999999999999954
No 452
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.83 E-value=6.5 Score=34.78 Aligned_cols=202 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEccCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHD--KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
+..++++..+|.|.-+|..+++.+.....-. ..+.+-.+..+|+ ++.++.++.+..+|. .++...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~------------~~G~~~ 134 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDA------------STGTLV 134 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEEC------------CCCcEE
Q ss_pred EeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEcc--CCcE
Q 035621 173 QKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGS--DGLI 246 (387)
Q Consensus 173 ~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--dg~i 246 (387)
-...... ..+..-....+ ..+..++.++.+...|..+++....+.. ......-........++.+.. ++.+
T Consensus 135 W~~~~~~~~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~ 211 (370)
T COG1520 135 WSRNVGGSPYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGIL 211 (370)
T ss_pred EEEecCCCeEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceE
Q ss_pred EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.-.|...+......+.............+....----.+.-+..++.++.+...|..+++.+..+.
T Consensus 212 ~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 212 YALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred EEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
No 453
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.70 E-value=5.5 Score=33.69 Aligned_cols=174 Identities=11% Similarity=0.125 Sum_probs=87.5
Q ss_pred CeEEEEEccCCCcccccCCC-------CCeeeEEeccCC-----CEEEEec-CCCcEEEEeCCCCceeEEccCC------
Q 035621 64 GSVHLYNLWSSTPLHNIPVP-------EPVAPLATTADG-----SYLFTGG-LSGNVYAISVPKGDILRSFSAH------ 124 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~~-------~~v~~~~~~~~~-----~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------ 124 (387)
-.+.+||+.+++.++.+..+ ..+..+.+.... .+++.+. ..+.|.++|+.+++.-+.+..+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 36778888888877766643 345566666522 2444443 3457999999888654433221
Q ss_pred -------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCc--ccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 125 -------------DKPVSCLKISP---DGSLLISGGDDGVIATVPIFQ--LVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 125 -------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
...+..++.+| +++.|.-....+. ++|.+.. +.+............++.+-........++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 22356666655 5566666554332 2333311 111110000000111222211123445566
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCc---EEEEEe-c---CCceeEEEeCC--CCCeEEEE
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGT---HLSTVT-F---PCAIMGLALDP--TETDFFAA 240 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~---~~~v~~~~~~~--~~~~l~~~ 240 (387)
+.+. |.++++--..+.|..|+..+.- ....+. - -..+..+.+.+ +|.+.+..
T Consensus 193 ~D~~--G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPN--GNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETT--TEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCC--CcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 6665 5888888889999999987621 122222 1 23567888887 65554444
No 454
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.68 E-value=0.59 Score=25.82 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=27.4
Q ss_pred CCCcEEEee-CCCCcEEEEeCCCCceeEeccCCCCCceeEEE
Q 035621 6 PCNEVILTS-SPEGPITAYNPSSGAILAHFSGSRSPRRGLTF 46 (387)
Q Consensus 6 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 46 (387)
|++++|+++ ..+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 577765554 46789999999999888877653 22344444
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.67 E-value=6.6 Score=34.45 Aligned_cols=204 Identities=15% Similarity=0.187 Sum_probs=108.8
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCC---CCeEEEEEccCC-Cccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTG---SGSVHLYNLWSS-TPLH 78 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~---d~~v~vw~~~~~-~~~~ 78 (387)
|...+++....++-+.+||++ |+.++.+. .+.++.+..-.+..+ .....+.+.. ..+|++|.+... ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 445677777788889999984 77777764 234444443211000 0001111222 257999988532 1222
Q ss_pred ccC--------CCCCeeeEEec--c-CCC-EEEEecCCCcEEEEeCC---CC----ceeEEccCCCCCeEEEEEcCCCCE
Q 035621 79 NIP--------VPEPVAPLATT--A-DGS-YLFTGGLSGNVYAISVP---KG----DILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 79 ~~~--------~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
.+. ....++.+|+. + +|. +.++...+|.+..|.+. .+ ++++.|.. ...+-.|........
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 222 11346667764 3 344 56667788988877763 33 35667764 447888999888889
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCCC-c
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLNG-T 214 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~-~ 214 (387)
|+.+-++.-|.-|+.... .......+.... .....|..|++-... .+.+|++.-.+++..+|+.... .
T Consensus 222 LYvgEE~~GIW~y~Aep~-------~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~ 294 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPE-------GGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNA 294 (381)
T ss_dssp EEEEETTTEEEEEESSCC-------C-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred EEEecCccEEEEEecCCC-------CCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence 999999987777766210 001122222222 234577888876543 2345555555788999997643 4
Q ss_pred EEEEEe
Q 035621 215 HLSTVT 220 (387)
Q Consensus 215 ~~~~~~ 220 (387)
.+..|.
T Consensus 295 ~~g~f~ 300 (381)
T PF02333_consen 295 YVGSFR 300 (381)
T ss_dssp EEEEEE
T ss_pred ccceEE
Confidence 444443
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=92.45 E-value=6.8 Score=34.07 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCcccccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621 125 DKPVSCLKISPDGSLLISGGDDGVIAT-VPIFQLVDEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
...+.++.+.|++.+++++ ..|.+.. +|- ....... ...-...++++.+.+++ +.++. +..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-------------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~ 234 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-------------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARG 234 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-------------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecC
Confidence 4578899999988666554 4455432 221 1111111 11234567888887764 55554 456
Q ss_pred CcEEEEeCCCCcEEEEEecC-----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621 203 CTCKFWRLLNGTHLSTVTFP-----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV 277 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (387)
|.+++=....+..-.....+ ..+..+.+.|++..+ +++.+|.+.. ....+...... .....-.....
T Consensus 235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~------~~~~~~~~~~~ 306 (334)
T PRK13684 235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKD------PVGEEVPSNFY 306 (334)
T ss_pred CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeEC------CcCCCCCcceE
Confidence 76653233444433322222 347788999877654 4555676653 22222111110 00001123577
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEE
Q 035621 278 SVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
.+.|..+++.+++| ..|.|.-|+
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEec
Confidence 78877776666654 678887775
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.39 E-value=4.2 Score=34.10 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEeCCcccccCCCCCCCCccceEeeec-
Q 035621 105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA- 177 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 177 (387)
..|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+.. .....+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~-------------~~w~~~~~~ 82 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN-------------QTWSSLGGG 82 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC-------------CeeeecCCc
Confidence 4599999877665544445678899999986666666664 345688888832 12222222
Q ss_pred ----cCCCeEEEEEeeCCCCceEEEEe-CC--CcEEEEeCCCCcEE
Q 035621 178 ----HNDSVTAITCCIGSFNSIIISCS-MD--CTCKFWRLLNGTHL 216 (387)
Q Consensus 178 ----~~~~i~~~~~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~ 216 (387)
-.+++..+.+......++.+.|. .+ ..|..||=.+...+
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 23677777765443334554544 22 34666765444433
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.01 E-value=13 Score=36.43 Aligned_cols=201 Identities=15% Similarity=0.078 Sum_probs=110.3
Q ss_pred EEEecCCCcEEEEeCCC-CceeE-------EccCCCCCeEEEEE--cCCCCEEEEEeCC---CcEEEEeCCcccccCCCC
Q 035621 98 LFTGGLSGNVYAISVPK-GDILR-------SFSAHDKPVSCLKI--SPDGSLLISGGDD---GVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 98 l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~--~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 164 (387)
+++-..+|.+.+|-.+. ++... .+..-...++..++ ..+|+.++.++.+ +.|++|.+.-.|......
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 44456778888887632 22111 11123345555444 4567666555554 889998875555411111
Q ss_pred CCCCccceEeee---------------------ccCCCeEEEEEee-----CCCCceEEEEeC----CCcEEEEeCCCCc
Q 035621 165 KNPDDLMLQKFV---------------------AHNDSVTAITCCI-----GSFNSIIISCSM----DCTCKFWRLLNGT 214 (387)
Q Consensus 165 ~~~~~~~~~~~~---------------------~~~~~i~~~~~~~-----~~~~~~l~s~~~----d~~i~iwd~~~~~ 214 (387)
.++...+...+. ..-..++.+.+-+ +.....+++.+. ...|.-|.+++..
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 111000100000 0113556666654 222245555443 2368889876421
Q ss_pred E------------------------E---EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc----ccc
Q 035621 215 H------------------------L---STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH----KGQ 263 (387)
Q Consensus 215 ~------------------------~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~ 263 (387)
. + ..+..+..|.+++...-+..++..-.||.|.++|..+....... ...
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~ 304 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP 304 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc
Confidence 0 0 11123467888888888899999999999999998876433222 111
Q ss_pred e-eEee-----cccccccEEEEEEecCCCEEEEEeCCCcEE
Q 035621 264 E-LVTL-----ANRHDGVVVSVMMMNEGKNLVSAAEDGSVY 298 (387)
Q Consensus 264 ~-~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 298 (387)
. +... ...+-..+..++|||.+..++.-..+|.+.
T Consensus 305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 1 1111 011222456789999999999999999866
No 459
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.91 E-value=9.4 Score=34.55 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=62.4
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe------cCCceeEEEeCCCC------CeEEEE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT------FPCAIMGLALDPTE------TDFFAA 240 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~------~~~~v~~~~~~~~~------~~l~~~ 240 (387)
+...-..-+.|+|.|++ ++|++--..|.|++++..++.. +..+. .......++++|+- .+|++.
T Consensus 25 va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDN--QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EECCCCCceEEEEcCCC--eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 33344566789998874 7777665569999998665432 21111 24668899999884 345444
Q ss_pred c----------cCCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC
Q 035621 241 G----------SDGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED 294 (387)
Q Consensus 241 ~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d 294 (387)
. ....|.-|.+...... ......+.... ..|. -..|+|.|||.++++.+..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~-l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQT-LEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCc-cccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 2 1233444544321110 11111222111 1243 3467799999877765543
No 460
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.82 E-value=14 Score=36.45 Aligned_cols=206 Identities=11% Similarity=0.080 Sum_probs=107.4
Q ss_pred ccCCCEEEEecCCCcEEEEeCCCCce---------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621 92 TADGSYLFTGGLSGNVYAISVPKGDI---------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 92 ~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 162 (387)
-++...++.-+.+|.|+-..+.+... ...++. ...+..+........++..+..|.+.............
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 34566777888889888776543211 111222 23344444444555677777778877665543222110
Q ss_pred CCCCCCccce---EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceeEEEeCC
Q 035621 163 DDKNPDDLML---QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLSTVTFPCAIMGLALDP 232 (387)
Q Consensus 163 ~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~ 232 (387)
...+.++ ..+.....-+..+.+....+...++..+.+|.++--++... .....+.....+..+....
T Consensus 574 ---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~ 650 (805)
T PRK05560 574 ---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTD 650 (805)
T ss_pred ---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeC
Confidence 1122222 12222222333444432123468899999999887765432 2222333344555555555
Q ss_pred CCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEE-EEecCCCEEEEEeCCCcEEEEECC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
....++..+..|.+..+....-.... ...+.....+ .....|.++ .+.+++.+++..+..|.++...+.
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL--REGDEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC--CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 56678888888888877665421111 1112222222 122334444 444444478888888988877654
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.72 E-value=1.2 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.5
Q ss_pred ceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621 194 SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230 (387)
Q Consensus 194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 230 (387)
.++++...+++|.++|..+++.+..+........++|
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 3455555688999999999998888876555555555
No 462
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.46 E-value=7.1 Score=32.22 Aligned_cols=198 Identities=12% Similarity=0.105 Sum_probs=119.2
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
.....++-.|||..-+++...+.|--.|..+|+....--+.......+...||+..-++-+.. -|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp--------- 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDP--------- 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecC---------
Confidence 456678888999999999888999999999998766554555666788888888755554332 3333332
Q ss_pred CCCCCccceEeee----ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeE
Q 035621 164 DKNPDDLMLQKFV----AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDF 237 (387)
Q Consensus 164 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l 237 (387)
+...+.++. ..........|.+.+ ++-+++.. |.---.|.. ...+..+. .......++..|+|...
T Consensus 132 ----kt~evt~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 132 ----KTLEVTRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred ----cccceEEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEE
Confidence 111222221 223455566666553 66666642 111111111 11233333 34567788999999998
Q ss_pred EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
++.-.++.|-..|........... .......-..+--+|.|+.-+|-...+.+..||..+..
T Consensus 204 yaslagnaiaridp~~~~aev~p~-------P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 204 YASLAGNAIARIDPFAGHAEVVPQ-------PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEeccccceEEcccccCCcceecC-------CCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 888788888877776642221111 11112223445556778887887778888888876654
No 463
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=6.5 Score=34.90 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621 123 AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 123 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
...++|.++.|++|.+.+++--.+.+|.+++.... +.......+.+.....|....|..+ .-++.-+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d--------~~~l~~~~~ck~k~~~IlGF~W~~s---~e~A~i~~~ 132 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD--------NSQLEYTQECKTKNANILGFCWTSS---TEIAFITDQ 132 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCC--------chhhHHHHHhccCcceeEEEEEecC---eeEEEEecC
Confidence 34679999999999999999999999999887210 0111122223334455777777655 334444433
Q ss_pred CcEEEEeCCCC-cEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 203 CTCKFWRLLNG-THLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 203 ~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
| +-+|-.... ..++..+ +...|+-..|.++.+.++.++.
T Consensus 133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 3 455543321 1222222 4566777778887766555443
No 464
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.27 E-value=18 Score=36.51 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=95.7
Q ss_pred CEEEEEeC---------CCcEEEEeCCcccccCCCCCCCCccceEe--eeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621 138 SLLISGGD---------DGVIATVPIFQLVDEHTDDKNPDDLMLQK--FVAHNDSVTAITCCIGSFNSIIISCSMDCTCK 206 (387)
Q Consensus 138 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~ 206 (387)
.++++|.. .|.+.++|+-+.......+ .+...++. .....++|..++=. . .+|+++ ....|.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP--~t~~KlKel~~eE~KGtVsavceV-~---G~l~~~-~GqKI~ 1119 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP--FTKNKLKELYIEEQKGTVSAVCEV-R---GHLLSS-QGQKII 1119 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCC--cccceeeeeehhhcccceEEEEEe-c---cEEEEc-cCcEEE
Confidence 36777642 3889999984422211111 11111222 23345677766532 2 245544 346799
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccc-ccccEEEEEEecC
Q 035621 207 FWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNE 284 (387)
Q Consensus 207 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~ 284 (387)
+|++.....+.-+. ..-++.-.....-.++|+.|.--..|.+.-+.... ..+..+.+. ..-.+.++.|--|
T Consensus 1120 v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-------~rlsL~srd~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1120 VRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-------YRLSLLSRDFEPLNVYSTEFLVD 1192 (1366)
T ss_pred EEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCc-------eEEEEeecCCchhhceeeeeEEc
Confidence 99994443332222 22233333333445677777777777776665422 111111111 1234777888766
Q ss_pred CC--EEEEEeCCCcEEEEECC--------CccEEEEeecccCCCceeEEEEe
Q 035621 285 GK--NLVSAAEDGSVYIWEIE--------KRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 285 ~~--~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|. +++++..|+.|++|-.. ..++++.-.-|....++++...+
T Consensus 1193 g~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp 1244 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMFRLP 1244 (1366)
T ss_pred CCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeEecc
Confidence 65 67888999999887532 24666666667666777776665
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.15 E-value=11 Score=33.99 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=25.4
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...|.+++..+..+.+++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34499999999889999999999999999975
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=7.4 Score=35.23 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.1
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
.|..+..++.|..++..+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 56778889999999988888854443
No 467
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=90.84 E-value=18 Score=35.75 Aligned_cols=235 Identities=14% Similarity=0.225 Sum_probs=114.0
Q ss_pred CCCCCeEEEEEccCCCc-------c--cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC---CC------Ccee---
Q 035621 60 TTGSGSVHLYNLWSSTP-------L--HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV---PK------GDIL--- 118 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~------~~~~--- 118 (387)
-+.+|.++--+..+... . ..++....+..+........++..+..|.+..... +. |..+
T Consensus 502 lS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~l 581 (800)
T TIGR01063 502 LSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNL 581 (800)
T ss_pred EcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHh
Confidence 56778877765533211 1 11222344544444455566666677787665543 22 1222
Q ss_pred EEccCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 119 RSFSAHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 119 ~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
..+.....-+.++... .+...++..+.+|.++-.++....... ..+.....+.. .+.+..+..... ...+
T Consensus 582 l~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~-----r~G~~aiklke-~D~lv~v~~~~~--~d~l 653 (800)
T TIGR01063 582 LPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIR-----SNGIIAIKLDD-GDELISVRLTSG--DDEV 653 (800)
T ss_pred ccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhc-----cCCcccccCCC-CCEEEEEEEeCC--CCEE
Confidence 1222222334445433 245689999999999988874432111 11111222222 234444433333 2456
Q ss_pred EEEeCCCcEEEEeCCC---------CcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeE
Q 035621 197 ISCSMDCTCKFWRLLN---------GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELV 266 (387)
Q Consensus 197 ~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 266 (387)
+..+..|.+..+.... |.....+.....|.++..-.++..++..+..|.++...+..-..... ..+....
T Consensus 654 ll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~i 733 (800)
T TIGR01063 654 MLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSI 733 (800)
T ss_pred EEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEE
Confidence 6666677766555432 11222222334455555444556788888899888887654222111 1111121
Q ss_pred eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.+ ......+..+....+...++..+.+|.+..++..
T Consensus 734 kl-~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 734 KI-TDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred Ec-cCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 11 1122333333333333445555666766666654
No 468
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=90.32 E-value=20 Score=35.44 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=109.6
Q ss_pred eccCCCEEEEecCCCcEEEEeCCCCce---------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 91 TTADGSYLFTGGLSGNVYAISVPKGDI---------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
+-++...+++-+.+|.|+-.++.+-.. ...++. ...+..+........++..+..|.+...+........
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 344556778888899888776543211 111222 2344444444455667777777877666553332211
Q ss_pred CCCCCCCccce---EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-------EEEEecCCceeEEEeC
Q 035621 162 TDDKNPDDLML---QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-------LSTVTFPCAIMGLALD 231 (387)
Q Consensus 162 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~ 231 (387)
. ...+.++ ..+.....-+..+.+....+...++..+.+|.++-.++..... ...+.....+..+...
T Consensus 571 r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~ 647 (800)
T TIGR01063 571 R---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT 647 (800)
T ss_pred c---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence 1 1122222 2222222334444433223346889999999999887654321 1122234455555555
Q ss_pred CCCCeEEEEccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.....++..+..|.+..+....-... ....+.....+ .....|.++..-++...++..+..|.++...+.
T Consensus 648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL--KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC--CCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 55567888888888877766432111 11112222222 223445555554555678888889988887654
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=9.7 Score=31.80 Aligned_cols=156 Identities=7% Similarity=0.036 Sum_probs=93.5
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+..++-+..+.++. ++.+.+..+.-+++.|+.+......+.. -.+--.++.. .|++..++..|.-+.+.|+..
T Consensus 82 ~i~~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 82 VINARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred EEehhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 333455666777765 4666777777799999977643332221 1133344444 578888888777778889844
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc---EEEEEecCCceeEEEeCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT---HLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~ 233 (387)
. ......-+.......-..++.+ |++-..+..|+-+.+-|+.... .+........+.++..+++
T Consensus 158 p---------ssP~lagrya~~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 158 P---------SSPQLAGRYALPGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred C---------CCceeeeeeccCCCCceeEEEe----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence 2 1122222333333333455554 3677777788999999998654 3444445557888888877
Q ss_pred CCeEEEEccCCcEEEEeccc
Q 035621 234 ETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~ 253 (387)
..+++.... -+.+-|...
T Consensus 225 r~y~vvy~e--gvlivd~s~ 242 (370)
T COG5276 225 RAYLVVYDE--GVLIVDVSG 242 (370)
T ss_pred eeEEEEccc--ceEEEecCC
Confidence 666655443 344444443
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.29 E-value=5.4 Score=28.89 Aligned_cols=107 Identities=7% Similarity=0.054 Sum_probs=68.7
Q ss_pred ceEEEEeCCCcEEEEeCCC--------CcEEEEEecCCceeEEEeCC-----CCCeEEEEccCCcEEEEecccccccccc
Q 035621 194 SIIISCSMDCTCKFWRLLN--------GTHLSTVTFPCAIMGLALDP-----TETDFFAAGSDGLIYKGLLKYQSRQQMH 260 (387)
Q Consensus 194 ~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 260 (387)
.-|+.++.-|+|.|++... ...+..+.....|++++-.+ ....|+.|+ ...+..||+......
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~--- 86 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL--- 86 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence 5677777888999998763 33566777788888886554 234455554 557889998763322
Q ss_pred ccceeEeecccccccEEEEEEec----CCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 261 KGQELVTLANRHDGVVVSVMMMN----EGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+.+.-...|+++.+-. +..+++.| .+..|.-||.+..+..++..
T Consensus 87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred -------hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEec
Confidence 1223345677776632 23344444 57789889988777776654
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=11 Score=38.19 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=52.3
Q ss_pred CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc--------------cceeEeecccccccEEEEEEecCCCE
Q 035621 222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK--------------GQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
+..|+++....+|+.+++| .||.++-.-......+...+ ...+..+...+..+|..+.....-..
T Consensus 178 g~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 5678899977777655554 55555433332222111100 01122222356789999999988889
Q ss_pred EEEEeCCCcEEEEECCC
Q 035621 288 LVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 288 l~s~~~dg~i~iwd~~~ 304 (387)
+.+-+..|+|.+|++..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999987
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.06 E-value=0.042 Score=48.15 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=88.0
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 164 (387)
.....|.+.+..++.++.+..+..||- .++...... ..+....++|..++..+ +.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq---- 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---- 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----
Confidence 334567787777888888888999984 455444443 34555678888777644 44567789999999432110
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 238 (387)
.+..--.|.... +.|++.. ..++.+...|.+.|++..+.+.+.... +...++++++.+.+..+.
T Consensus 111 ------qLE~gg~~s~sl--l~wsKg~--~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 111 ------QLESGGTSSKSL--LAWSKGT--PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred ------HHhccCcchHHH--HhhccCC--ccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 000000111111 5566553 667777788999999988776665555 778889999988765443
No 473
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.53 E-value=6.7 Score=35.45 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
..|..++..+.. +.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r--~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSR--RLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTT--TEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCc--CEEEEEeCCCcEEEEEEeCC
Confidence 348888887764 89999999999999999853
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.31 E-value=1 Score=42.25 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccc------ccCCCCCCCCccceE--------eeeccCCCeEEEEEee--CCCCceEEE
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLV------DEHTDDKNPDDLMLQ--------KFVAHNDSVTAITCCI--GSFNSIIIS 198 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~--~~~~~~l~s 198 (387)
++...++.+..||.+......... .............+. ...........+++.. -....++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 366788888999998888764311 000000000000000 0011123344455544 112479999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEe
Q 035621 199 CSMDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 199 ~~~d~~i~iwd~~~~~~~~~~~ 220 (387)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977664
No 475
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.28 E-value=22 Score=34.50 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=56.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC-CCCCCCccceEee--------eccCCCeEEEEEeeCC-CCc
Q 035621 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT-DDKNPDDLMLQKF--------VAHNDSVTAITCCIGS-FNS 194 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~~ 194 (387)
.-.|..+.++|+|++++..|..| |.|-.+.+.+.... ..........+.+ ..+...|..+.|+|.+ ++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688999999999999988855 45555533221110 0000111111111 1344578899999986 357
Q ss_pred eEEEEeCCCcEEEEeCCCCc
Q 035621 195 IIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~ 214 (387)
.|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997543
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=13 Score=31.12 Aligned_cols=189 Identities=8% Similarity=0.046 Sum_probs=100.3
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD- 116 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 116 (387)
+..+.++.+..+. +..+.-+++.|+.+......+. ..+--.+ +.-.|++..++..+.-+.+.|+.+.+
T Consensus 89 ~~Dv~vse~yvyv------ad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 89 FADVRVSEEYVYV------ADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hheeEecccEEEE------EcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence 4455555544444 3466679999997765443333 2232333 34467888888866668888886543
Q ss_pred --eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621 117 --ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 117 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (387)
+..........-..++.+ |++-..+..|+-+.+.|+.+. ....+.........+.++..+++. .
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp----------~sPvli~~~n~g~g~~sv~vsdnr--~ 226 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP----------HSPVLIGSYNTGPGTYSVSVSDNR--A 226 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC----------CCCeEEEEEecCCceEEEEecCCe--e
Confidence 333444444444566664 677888889999999999542 111222222222366777666542 3
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEE-EeCCCCCeEEEEccCCcEEEEeccc
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGL-ALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
+++. .+.-+.+-|....+....+. ....+.++ .+.-.+++......+.-+.+.|+..
T Consensus 227 y~vv--y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 227 YLVV--YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEE--cccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 3333 23346666766555433332 11111111 2222344444444444444444443
No 477
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.53 E-value=1.3 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEeCCCcEEEEECCCccEEEEe
Q 035621 287 NLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
.++.++.+|.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999988764
No 478
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.33 E-value=13 Score=35.74 Aligned_cols=245 Identities=10% Similarity=-0.072 Sum_probs=0.0
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCC--------------CeEEEEEc--cCCCcccccCCCCCeeeEEecc-----
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGS--------------GSVHLYNL--WSSTPLHNIPVPEPVAPLATTA----- 93 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--------------~~v~vw~~--~~~~~~~~~~~~~~v~~~~~~~----- 93 (387)
+.+..+|.|++..| .-++.+.-...+.. |.+.+..+ .+.+.+..+.....+.|+.+.|
T Consensus 451 ~~~~~rilC~a~~P-~P~l~~es~pssrs~~g~lp~G~~~~~~gq~~i~s~~~stP~~v~cf~~~~r~lcm~y~Ps~ee~ 529 (925)
T KOG3522|consen 451 QVCSARILCTASVP-EPYLNSESNPSSRSAHGRLPAGSCTHQMGQIAIESVGRSTPNGVGCFSFGGRNLCMSYLPSLEEL 529 (925)
T ss_pred hccccccceeecCC-cccccCCCCCcccccccccCCCcccccccceeeeeccCCCCCcccceeecccccchhhCcchhhc
Q ss_pred ----------------CCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 94 ----------------DGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 94 ----------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
+...+..|+.++.+.++.-..+ ............+.++.+++.. +..|.-||++-.+-
T Consensus 530 ~~sp~a~P~~~~~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~ 607 (925)
T KOG3522|consen 530 TQSPTAVPETPDTQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYG 607 (925)
T ss_pred cCCCCCCCCCcccccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCcccccc
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEE
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLA 229 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~ 229 (387)
- .........+...+.....++.+.++..+ ++-++.+|.+.++...+........ +...|+++.
T Consensus 608 r-------ap~gSwd~ep~~~~~~g~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~ 675 (925)
T KOG3522|consen 608 R-------APSGSWDGEPNISIPTGSLPVRSLAFQED-----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHML 675 (925)
T ss_pred C-------CCCCCCCCCCccccccCCccccchhhhhc-----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEE
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc--cEEEEEEecCCCEEEEEeCCCcE
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG--VVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
+...+-+++.++.|-..+. +..+-.-.+................ .|....|+ ...|.+++.++..
T Consensus 676 ~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c--~gl~~V~~~~~l~ 742 (925)
T KOG3522|consen 676 YLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWC--QGLLMVLTSLTLL 742 (925)
T ss_pred eeCCceEEEEcCCCEEEEe-cccccCCccccccCcceeecCCCcccccCCCcccc--cceeEEeccceeE
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=19 Score=32.15 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
..++|.++.|++|.+.||+--.+.+|.+++....+.. .+.+.....|....|+.+ .-++.....| +-+|...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~-- 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL-- 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc--
Confidence 4568999999999999999999999999997433322 222333456888999865 4455444433 4566542
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
+....++..+.|...|+--.|+++..=-+|+++-..+++.=+-++++
T Consensus 141 ---------pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 141 ---------PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ---------hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 23445566677888888888888752112223223444444444443
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.81 E-value=8.4 Score=29.72 Aligned_cols=102 Identities=8% Similarity=-0.014 Sum_probs=0.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++||.||++.+..+. .|.|.+..+.. ........................-..+.+....-...--+... .-
T Consensus 10 l~WS~Dg~laV~t~~--~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~ 82 (173)
T PF12657_consen 10 LAWSEDGQLAVATGE--SVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDD-----EE 82 (173)
T ss_pred eeECCCCCEEEEcCC--eEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccc-----cc
Q ss_pred CCCCCeeeEEeccCCC------EEEEecCCCcEEEE
Q 035621 81 PVPEPVAPLATTADGS------YLFTGGLSGNVYAI 110 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~------~l~~~~~dg~i~i~ 110 (387)
.....+..++|||.|- +|++-+.++.|.+|
T Consensus 83 ~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 83 ISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred cccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.71 E-value=23 Score=32.68 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCCEEEEE---eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 135 PDGSLLISG---GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 135 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
.++-+++.. ...+...++|. .+.....+.........+...+++ .+++..+ ..++.+|+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-------------~G~Vrw~~~~~~~~~~~~~~l~nG--~ll~~~~--~~~~e~D~~ 175 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-------------NGDVRWYLPLDSGSDNSFKQLPNG--NLLIGSG--NRLYEIDLL 175 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-------------TS-EEEEE-GGGT--SSEEE-TTS---EEEEEB--TEEEEE-TT
T ss_pred CCcEEEEeCCCCCCCceEEEECC-------------CccEEEEEccCccccceeeEcCCC--CEEEecC--CceEEEcCC
Q ss_pred CCcEEEEEecCCce----eEEEeCCCCCeEEEEcc-------------CCcEEEEeccccccccccccceeEeeccccc-
Q 035621 212 NGTHLSTVTFPCAI----MGLALDPTETDFFAAGS-------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD- 273 (387)
Q Consensus 212 ~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~- 273 (387)
|+.+..+..+... ..+..-|+|++|+.+.. ...|..+| .++...................
T Consensus 176 -G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~ 253 (477)
T PF05935_consen 176 -GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVL 253 (477)
T ss_dssp ---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTG
T ss_pred -CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccc
Q ss_pred -----------------ccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 274 -----------------GVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 274 -----------------~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
-.++++.+.+ ++.+|+|+-.-..|...|.++++....+..+
T Consensus 254 ~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 254 KPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp GT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.67 E-value=3.8 Score=36.23 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=96.0
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeE-EEEEeeCCCCce
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVT-AITCCIGSFNSI 195 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~~~ 195 (387)
+..+......+..+-..|||+.+..-+. ..+.++++.+..-.. .+....-.+. ...|+ .+..... +.-
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-------rkl~~dspg~~~~~Vte~l~lL~G--g~S 282 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-------RKLVDDSPGDSRHQVTEQLYLLSG--GFS 282 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-------hhhhhcCCCchHHHHHHHHHHHhC--cee
Confidence 3334445567888999999998877665 678888874311100 0000000000 00111 1111111 356
Q ss_pred EEEEeCCCcEEEE-eCCCCc-----EEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621 196 IISCSMDCTCKFW-RLLNGT-----HLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL 268 (387)
Q Consensus 196 l~s~~~d~~i~iw-d~~~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 268 (387)
++.++.||-|.-| |.+.+. .++.++. +.++..+.-..+.+-+++-..+|.+..+...... .+. +
T Consensus 283 LLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~--------~lL-~ 353 (733)
T COG4590 283 LLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK--------LLL-F 353 (733)
T ss_pred EEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc--------cee-h
Confidence 7778888888766 554322 2223332 2444444444445667777778888777554311 111 1
Q ss_pred cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
..--..+.-+++||.+.++++- ..|.++++.+++..+.-++.
T Consensus 354 -~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 354 -ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISWS 395 (733)
T ss_pred -hhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCccHH
Confidence 1122356678999999999875 45789999998876654443
No 483
>PRK05560 DNA gyrase subunit A; Validated
Probab=87.11 E-value=34 Score=33.99 Aligned_cols=235 Identities=11% Similarity=0.168 Sum_probs=112.3
Q ss_pred CCCCCeEEEEEccCCCc-------c--cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCC------Ccee---
Q 035621 60 TTGSGSVHLYNLWSSTP-------L--HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPK------GDIL--- 118 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~------~~~~--- 118 (387)
-+.+|.|+--.+.+... . ..++....+..+........|+..+..|.+.... ++. |..+
T Consensus 504 lS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~l 583 (805)
T PRK05560 504 LTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNL 583 (805)
T ss_pred EeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHh
Confidence 45777777665533211 1 1112233444444445556666666778666554 332 2222
Q ss_pred EEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 119 RSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 119 ~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
..+.....-+..+.+.. +...++..+.+|.++--++....... ..+.....+.. .+.+..+..... ...+
T Consensus 584 l~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~-----r~G~~~ikLke-~D~lv~v~~~~~--~d~l 655 (805)
T PRK05560 584 LPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIR-----SNGIIAINLDE-GDELIGVRLTDG--DDDI 655 (805)
T ss_pred cCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcc-----cCCceeeccCC-CCEEEEEEEeCC--CCEE
Confidence 11222233344555552 56789999999999888774332111 11222223332 233434433333 2456
Q ss_pred EEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEE-EeCCCCCeEEEEccCCcEEEEeccccccccc-ccccee
Q 035621 197 ISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGL-ALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQEL 265 (387)
Q Consensus 197 ~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~ 265 (387)
+..+..|.+..+....- .....+.....|..+ .+.+++.+++..+..|.++...+........ ..+...
T Consensus 656 ll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~ 735 (805)
T PRK05560 656 LLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVIT 735 (805)
T ss_pred EEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEe
Confidence 66667787766654321 122222223334433 3444444788888889888877654222111 011112
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
..+ ......+..+........++..+.+|.+..++..
T Consensus 736 lkl-~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 736 IKI-TEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred eec-cCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 111 1112333333222233345555566766666654
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.11 E-value=12 Score=35.63 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=58.0
Q ss_pred EeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621 208 WRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 208 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
.|+-.|+....+.|.+.|--+.++..+..|+.-...-.+.++|+.+..+... -.-.+-+.|-|....
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmi-------------lnfcsymqwvp~sdv 389 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMI-------------LNFCSYMQWVPGSDV 389 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHH-------------HHHhhhheeccCcce
Confidence 4444555555566777777777777776777666677788888876321110 122456789998888
Q ss_pred EEEEeCCCcEEEE-ECCCccEEEEee
Q 035621 288 LVSAAEDGSVYIW-EIEKRQVVMVLK 312 (387)
Q Consensus 288 l~s~~~dg~i~iw-d~~~~~~~~~~~ 312 (387)
++.-+.|. +.|| +++..+.+..++
T Consensus 390 ivaqn~dn-l~iwyn~d~peqvt~~k 414 (1636)
T KOG3616|consen 390 IVAQNGDN-LCIWYNIDAPEQVTMFK 414 (1636)
T ss_pred EEecCCCc-eEEEecCCcchhheeeE
Confidence 88776665 5555 666666666554
No 485
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.93 E-value=23 Score=31.84 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=80.2
Q ss_pred eccccCCCCCeEEEEEccCCC-----cccccCCCCCeeeEEecc-----CCCEEEEecCCCcEEEEeCCC--Cc------
Q 035621 55 SHISPTTGSGSVHLYNLWSST-----PLHNIPVPEPVAPLATTA-----DGSYLFTGGLSGNVYAISVPK--GD------ 116 (387)
Q Consensus 55 ~~~~~~~~d~~v~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~--~~------ 116 (387)
..++.|+..|.++||+...+. .+...+...+|..+..-. +...||+ -.-..+.+|.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 456668999999999985543 333444667888777543 2234544 3556788887721 11
Q ss_pred -eeEEccCCC--CCeEEEEEcC----C-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 117 -ILRSFSAHD--KPVSCLKISP----D-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 117 -~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
.+..+..|. .....++.-| . ..++.+-+.||.+.+|+-.. .....+....--...+.++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-------------~~f~~~lp~~llPgPl~Y~ 183 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-------------FAFSRFLPDFLLPGPLCYC 183 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-------------EEEEEEcCCCCCCcCeEEe
Confidence 111222222 2223333322 2 35788899999999997622 1111111111112235566
Q ss_pred eCCCCceEEEEeCCCcEEEEeC
Q 035621 189 IGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 189 ~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
+.. +.|++++.+..+..|..
T Consensus 184 ~~t--Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 184 PRT--DSFVTASSSWTLECYKY 203 (418)
T ss_pred ecC--CEEEEecCceeEEEecH
Confidence 664 67888888888888865
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.77 E-value=14 Score=31.14 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCceeEeccCCCCCceeEEEc-CccceeeeccccCC-CCCeEEEEEccCCCccccc-----CCCCCeeeE
Q 035621 17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAASHISPTT-GSGSVHLYNLWSSTPLHNI-----PVPEPVAPL 89 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~-~d~~v~vw~~~~~~~~~~~-----~~~~~v~~~ 89 (387)
-..|++||..+.+...--.+-.+.|+++.|. .+..+.+..+...+ ....+..||..+......- ..+++|..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 4569999998777666555667789999997 45555555444444 6778999998776432211 235778887
Q ss_pred Eecc-CCC-EEEEec-CCC--cEEEEeC
Q 035621 90 ATTA-DGS-YLFTGG-LSG--NVYAISV 112 (387)
Q Consensus 90 ~~~~-~~~-~l~~~~-~dg--~i~i~d~ 112 (387)
.+.. |+. ..+.|. .+| .|..||-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 7754 333 333433 223 4555653
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.74 E-value=16 Score=29.94 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCceeEEEeCCCCCeEEEEccCCcE-EEEeccccccccccccceeEeecc-----cccccEEEEEEecCCCEEEEEeCCC
Q 035621 222 PCAIMGLALDPTETDFFAAGSDGLI-YKGLLKYQSRQQMHKGQELVTLAN-----RHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
+.--.....-|||+.|++|+..... .+|.-..... ......++. .....--.+...|+|++|+.+..+
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~-----~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~- 190 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP-----GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG- 190 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCC-----CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-
Confidence 3334455666899999999887432 3333211100 000000110 011112245567999999988765
Q ss_pred cEEEEECCCccEEEEeec
Q 035621 296 SVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~ 313 (387)
-.|||..+++.++.+..
T Consensus 191 -s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 191 -SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred -cEEEeCCCCeEEeeCCC
Confidence 46779999988887764
No 488
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.46 E-value=1.7 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEec
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHF 34 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~ 34 (387)
.++.++.+|.+..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999999887653
No 489
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.39 E-value=18 Score=30.75 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE
Q 035621 21 TAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT 100 (387)
Q Consensus 21 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 100 (387)
.++|+.+++.+.+ .-.-..+-.|..+...... +..|.+..+|.++|+.......++....++|. |.++++
T Consensus 188 ~vidv~s~evl~~---GLsmPhSPRWhdgrLwvld-----sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvV 257 (335)
T TIGR03032 188 CVIDIPSGEVVAS---GLSMPHSPRWYQGKLWLLN-----SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFV 257 (335)
T ss_pred EEEEeCCCCEEEc---CccCCcCCcEeCCeEEEEE-----CCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEE
Q ss_pred ecCCCc--------------------EEEEeCCCCceeEEcc--CCCCCeEEEEEcCC
Q 035621 101 GGLSGN--------------------VYAISVPKGDILRSFS--AHDKPVSCLKISPD 136 (387)
Q Consensus 101 ~~~dg~--------------------i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~ 136 (387)
|-..-. |.+.|+++|..+..++ +--..+..++.-|.
T Consensus 258 gmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 258 GLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.92 E-value=27 Score=31.75 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=59.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC----CCceEEEE
Q 035621 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS----FNSIIISC 199 (387)
Q Consensus 124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~s~ 199 (387)
.-...+.|+|.|++++|++--..|.|++++........ ..................|+++|+- .+.+|+..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-----~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-----VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-----eecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34567899999999877665546999988652210000 0000000001135678899999873 22344443
Q ss_pred e-C---------CCcEEEEeCCCC--c---EEEEEe-c----CCceeEEEeCCCCCeEEEEccC
Q 035621 200 S-M---------DCTCKFWRLLNG--T---HLSTVT-F----PCAIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 200 ~-~---------d~~i~iwd~~~~--~---~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~d 243 (387)
. . ...|.-|.+... . ....+. . ...-..+.|.|||.++++.+..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2 1 223444444321 1 111111 1 1234578899999876655543
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.71 E-value=30 Score=32.16 Aligned_cols=237 Identities=14% Similarity=0.175 Sum_probs=104.6
Q ss_pred CCCCCeEEEEEccCCCc---ccccCC-CCCeeeEEeccCC-CEEEEecCCC--cEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621 60 TTGSGSVHLYNLWSSTP---LHNIPV-PEPVAPLATTADG-SYLFTGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLK 132 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~---~~~~~~-~~~v~~~~~~~~~-~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~ 132 (387)
+..+|.+....+..... +..+.. .....++++..+| .+|+.|+.-| .+.-+....-+.+..+. .-++|..++
T Consensus 228 ~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~ 306 (504)
T PF10433_consen 228 QDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFC 306 (504)
T ss_dssp EETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEE
T ss_pred EeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceE
Confidence 56888888877654331 222212 3445667766655 4777777555 45555533444555554 357899888
Q ss_pred EcCC----CC------EEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEE
Q 035621 133 ISPD----GS------LLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIII 197 (387)
Q Consensus 133 ~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~ 197 (387)
+.+. .. .+++++ .+|.+++..-.- .. . ........-. ..++.+...... +.+|+
T Consensus 307 v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi--~~-------~-~~~~~~~~l~~v~~iW~l~~~~~~-~~~lv 375 (504)
T PF10433_consen 307 VVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGI--GI-------E-GLELASSELPGVTGIWTLKLSSSD-HSYLV 375 (504)
T ss_dssp EE-TSSSSS-------EEEEEESSGGG-EEEEEEESB--EE-------E---EEEEEEESTEEEEEEE-SSSSS-BSEEE
T ss_pred EeccccCCCCcccccceEEEEECcCCCCcEEEEeccC--Cc-------e-eeeeeccCCCCceEEEEeeecCCC-ceEEE
Confidence 8531 11 455543 567888874310 00 0 0011111222 223333322211 35666
Q ss_pred EEeCCCcEEEEeCC---CCcEEEEEecCCceeEEEeCCCCCeEEEEcc---------CCcEEEEecccccccccccccee
Q 035621 198 SCSMDCTCKFWRLL---NGTHLSTVTFPCAIMGLALDPTETDFFAAGS---------DGLIYKGLLKYQSRQQMHKGQEL 265 (387)
Q Consensus 198 s~~~d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~ 265 (387)
.+..+ .-+++.+. ....+..... . .|..+...|+++.- ...|++.+.... ...
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~-----~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~--------~~~ 440 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVEE-----D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDG--------KLT 440 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE---------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSST--------SEE
T ss_pred EEcCC-ceEEEEEecccCCcchhhhhh-----c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCC--------eEE
Confidence 65554 34455553 2333322210 0 22233333333332 123555554431 122
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc----cCCCceeEEEE
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE----LAGSISEMVIA 325 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~ 325 (387)
..+.......|.+.+.. +.+++.+-.++.+..+.++........... ....|+++.+.
T Consensus 441 ~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~ 502 (504)
T PF10433_consen 441 QEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIE 502 (504)
T ss_dssp EEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE--
T ss_pred EEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeC
Confidence 22212234455555553 456777777889999999887775444322 45577776654
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.47 E-value=35 Score=32.70 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=50.7
Q ss_pred cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
...+..+.++++.-+|.+..++.+..||.|.+|+....+...... ...+-..+.|...| |+++.+|+.+.-|.-
T Consensus 9 ~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 9 RDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred CCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 333445668888889999999999999999999986554422222 22344556676555 677777777777754
No 493
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=16 Score=28.85 Aligned_cols=109 Identities=8% Similarity=-0.014 Sum_probs=69.0
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 197 ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 197 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
.-.-.+|....+|..+.+++..+..++.-..++. |+..|+.+.....++.-|.++..... ...+......-..+
T Consensus 105 ~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~----~v~VT~~g~pv~~L 178 (262)
T COG3823 105 QLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD----TVQVTDDGVPVSKL 178 (262)
T ss_pred EEEeccceeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc----eEEEEECCeecccc
Confidence 3344688899999999999998887776666654 55567777766677776665532111 11111111111233
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+.+.|- +|...|-.=.+..|..-|.++|+.+..+.
T Consensus 179 NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wid 213 (262)
T COG3823 179 NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWID 213 (262)
T ss_pred cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEE
Confidence 445553 56677766666778888899999888775
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.89 E-value=3.3 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=23.9
Q ss_pred EEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 287 NLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
.+..++.||.|.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556689999999999999999998754
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.24 E-value=35 Score=31.59 Aligned_cols=270 Identities=16% Similarity=0.085 Sum_probs=124.4
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCe
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPV 86 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v 86 (387)
.+-.|+.|| +..||..+++.++.-.... .+|..+.-+-.+. +..|+.+| +.+.+.+..+...... ..+.|
T Consensus 177 ~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-----LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I 249 (671)
T COG3292 177 RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-----LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNI 249 (671)
T ss_pred cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-----EEEEeccc-eEEEchhhccccccCCCCcchhe
Confidence 455677766 6678888887766554433 4566555443222 22234444 5666554422111111 12334
Q ss_pred eeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 87 APLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAH--DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
..+.-..+| .+-.|+.+|..+ +..+...... ..+.| -..|.++-...+|. +-+++.+|.+++-+-
T Consensus 250 ~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a--------- 317 (671)
T COG3292 250 LLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA--------- 317 (671)
T ss_pred eeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc---------
Confidence 444433344 355566666333 3333332222 22222 23456666666665 566666666655332
Q ss_pred CCCCCccceEeeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEE
Q 035621 164 DKNPDDLMLQKFVAHND-SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~ 240 (387)
.......+....+ .+...+..|......+.-...-|.+.+-+-.++..+.... -+..|+..++..++ .+..+
T Consensus 318 ----~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 318 ----DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred ----hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEE
Confidence 1111111111111 1111111121111111112222344455555666555543 23556666676644 45555
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+...-+..|+.++. .........-..++|..+-=.|+++ |..|+.+|.++. +.+.++....+.
T Consensus 393 s~q~GLsrl~n~n~-------~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln 455 (671)
T COG3292 393 SMQNGLSRLDNKNE-------WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLN 455 (671)
T ss_pred ecccchhhhccCCc-------ccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccc
Confidence 55433444554440 1111111223456788888888888 788888886654 445555444443
No 496
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.12 E-value=36 Score=31.67 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=105.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-----ceeEecc---CCCCCceeEEEcC-----ccceeeeccccCCCCCeEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-----AILAHFS---GSRSPRRGLTFAG-----KPFIAASHISPTTGSGSVHL 68 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~v~~~~~~~-----~~~~~~~~~~~~~~d~~v~v 68 (387)
++.+|.|+.++.+..+|.+.|+-++.. .....+. .....|..++|.. +....+...........+..
T Consensus 49 l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~ 128 (504)
T PF10433_consen 49 LAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVT 128 (504)
T ss_dssp EEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEE
T ss_pred EEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEE
Confidence 578899999999999999999988760 0001110 1244577788764 11122222222222334455
Q ss_pred EEccCCCccccc-C-----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeC-C--CC-ceeEEccC----CCCCe
Q 035621 69 YNLWSSTPLHNI-P-----------VPEPVAPLATTADGSYLFTGGLSGNVYAISV-P--KG-DILRSFSA----HDKPV 128 (387)
Q Consensus 69 w~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~--~~-~~~~~~~~----~~~~v 128 (387)
+.+.....+... . ...+..-+........+++++. + +.+|.. . .+ .....+.. ...-+
T Consensus 129 y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (504)
T PF10433_consen 129 YEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPPSSSSSLW 206 (504)
T ss_dssp EE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-S-EEEEEE------TTEEEEE--H-HHHTS-E
T ss_pred EeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-E-EEEEecccccccccccccccCCccCCCceE
Confidence 443222211110 0 0111111222111223334332 3 344432 1 11 11112211 12233
Q ss_pred EEEEE-------cCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEe
Q 035621 129 SCLKI-------SPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 129 ~~~~~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
.+... ..++..++.+..+|.+....+... ........-+. .....++.+..++ +.+++.|+
T Consensus 207 ~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~----------~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs 275 (504)
T PF10433_consen 207 TSWARPERNISYDKDGDRILLQDEDGDLYLLTLDND----------GGSISITYLGTLCSIASSLTYLKNG-GDYLFVGS 275 (504)
T ss_dssp EEEEE------SSTTSSEEEEEETTSEEEEEEEEEE----------EEEEEEEEEEE--S-ESEEEEESTT---EEEEEE
T ss_pred EEEEeccccceecCCCCEEEEEeCCCeEEEEEEEEC----------CCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEE
Confidence 33332 446778999999999988877321 00111222222 4455667766553 34888887
Q ss_pred CC--CcEEEEeCCCCcEEEEEecCCceeEEEeCCC----CC------eEEEEc---cCCcEEEEec
Q 035621 201 MD--CTCKFWRLLNGTHLSTVTFPCAIMGLALDPT----ET------DFFAAG---SDGLIYKGLL 251 (387)
Q Consensus 201 ~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~i~d~ 251 (387)
.- +.+.-|.....+.+..+..-+++..+++.+. .. .|++++ .+|.+++..-
T Consensus 276 ~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 276 EFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp SSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred ecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 74 4555555555556666666788888888532 11 455543 3778887644
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.88 E-value=32 Score=30.81 Aligned_cols=149 Identities=9% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
+....+..++++.+++.+.....++-||-....-...-......+..+.+.+++..++++..-+.+.--|-
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~--------- 309 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGT--------- 309 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCC---------
Q ss_pred CCCCCccceEeeeccCCC-----eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCC
Q 035621 164 DKNPDDLMLQKFVAHNDS-----VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTE 234 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~ 234 (387)
........+...... +.++.+.++ ..++.++..|.+... ...++.-.... .......+.|.++
T Consensus 310 ---G~~~~~~~f~~~~~~~~~~~l~~v~~~~d---~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~- 381 (398)
T PLN00033 310 ---GLTEEDFDFEEADIKSRGFGILDVGYRSK---KEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDD- 381 (398)
T ss_pred ---CCcccccceeecccCCCCcceEEEEEcCC---CcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCC-
Q ss_pred CeEEEEccCCcEEEE
Q 035621 235 TDFFAAGSDGLIYKG 249 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~ 249 (387)
+..++.+.+|.|..|
T Consensus 382 ~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 KKGFVLGNDGVLLRY 396 (398)
T ss_pred CceEEEeCCcEEEEe
No 498
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.99 E-value=5.3 Score=21.50 Aligned_cols=29 Identities=10% Similarity=-0.159 Sum_probs=23.7
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEEEEecCC
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLSTVTFPC 223 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 223 (387)
.++.++.+|.|.-.|.++|+.+..++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 34556899999999999999999887543
No 499
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.97 E-value=26 Score=29.14 Aligned_cols=231 Identities=15% Similarity=0.120 Sum_probs=127.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++-+|||..-.++...+.|--.|..+|+....--+.......+..-|++..-. +-+.. .|.-.|-++.+. ..+.
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi----td~~~-aI~R~dpkt~ev-t~f~ 140 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI----TDTGL-AIGRLDPKTLEV-TRFP 140 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE----ecCcc-eeEEecCcccce-EEee
Confidence 56678888888888888888889999987665555555567777777543211 11111 344444433332 1222
Q ss_pred ----C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 82 ----V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 82 ----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
+ ........|.+.|++-+++. .|.---.|... ..+..+.. .....+.|+..|+|..-++.-.+..|...|..
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 2 24677889999999888875 23222223211 22333332 23456788999999988887777777777663
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDP 232 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~ 232 (387)
..... .+-.-.........+-..|. +..-++....+.+.-||..+.. -.++.. +....++....
T Consensus 219 ~~~ae----------v~p~P~~~~~gsRriwsdpi--g~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 219 AGHAE----------VVPQPNALKAGSRRIWSDPI--GRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred cCCcc----------eecCCCcccccccccccCcc--CcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeecc
Confidence 22110 00000110111222222233 4666666666777777766544 334442 23445555555
Q ss_pred CCCeEEEEccCCcEEEEeccc
Q 035621 233 TETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~ 253 (387)
.++..++--..|.|.-+|-++
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 555555444455666665554
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.93 E-value=6.2 Score=26.40 Aligned_cols=44 Identities=14% Similarity=-0.032 Sum_probs=31.3
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621 198 SCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
.+..+|.+.-||..+++....+..-...+.+++++|+.+++++-
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 34456889999999987655555556788999999999887763
Done!