Query 035621
Match_columns 387
No_of_seqs 801 out of 2362
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 07:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.3E-49 4.3E-54 353.4 35.3 277 2-303 114-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 5.5E-48 1.9E-52 331.3 36.1 275 2-303 38-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 6.3E-48 2.2E-52 334.2 36.3 272 2-301 61-340 (340)
4 1nr0_A Actin interacting prote 100.0 3.2E-47 1.1E-51 354.8 39.7 361 2-372 65-609 (611)
5 2ynn_A Coatomer subunit beta'; 100.0 7.8E-47 2.7E-51 322.1 36.6 278 2-305 19-303 (304)
6 4gqb_B Methylosome protein 50; 100.0 1.8E-47 6E-52 330.5 33.0 277 2-307 36-334 (344)
7 4g56_B MGC81050 protein; prote 100.0 1.1E-47 3.9E-52 334.3 31.9 280 2-307 48-346 (357)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-47 1.1E-51 330.4 34.2 295 2-312 22-343 (345)
9 2pbi_B Guanine nucleotide-bind 100.0 3.8E-46 1.3E-50 324.5 38.2 273 2-301 70-354 (354)
10 3iz6_a 40S ribosomal protein R 100.0 1.2E-46 4.1E-51 331.1 33.8 283 2-306 72-377 (380)
11 1nr0_A Actin interacting prote 100.0 2.5E-46 8.5E-51 348.8 37.2 304 2-326 24-377 (611)
12 3frx_A Guanine nucleotide-bind 100.0 3.1E-46 1E-50 320.6 33.7 283 2-305 23-318 (319)
13 2ynn_A Coatomer subunit beta'; 100.0 3E-45 1E-49 312.3 36.5 274 29-328 4-282 (304)
14 3ow8_A WD repeat-containing pr 100.0 1.1E-44 3.8E-49 310.8 36.0 276 28-327 22-301 (321)
15 2ymu_A WD-40 repeat protein; u 100.0 2.6E-44 9E-49 334.0 39.3 293 2-328 268-561 (577)
16 2xzm_R RACK1; ribosome, transl 100.0 1.8E-44 6.1E-49 313.0 35.3 281 5-306 35-342 (343)
17 2hes_X YDR267CP; beta-propelle 100.0 1.5E-44 5.3E-49 311.5 34.1 280 2-304 20-328 (330)
18 1vyh_C Platelet-activating fac 100.0 3.2E-44 1.1E-48 318.6 36.7 270 31-328 101-392 (410)
19 4ery_A WD repeat-containing pr 100.0 1.3E-43 4.6E-48 303.6 37.9 275 2-303 29-311 (312)
20 1erj_A Transcriptional repress 100.0 1.1E-43 3.9E-48 313.5 35.1 275 2-305 70-390 (393)
21 1got_B GT-beta; complex (GTP-b 100.0 4.6E-43 1.6E-47 303.7 36.3 272 28-327 45-323 (340)
22 4aow_A Guanine nucleotide-bind 100.0 4.8E-43 1.6E-47 303.8 35.4 286 2-306 44-339 (340)
23 3zwl_B Eukaryotic translation 100.0 2.6E-43 9E-48 308.8 32.9 284 2-312 38-354 (369)
24 1gxr_A ESG1, transducin-like e 100.0 2.3E-42 8E-47 299.0 37.8 295 2-327 15-317 (337)
25 2pbi_B Guanine nucleotide-bind 100.0 3.2E-42 1.1E-46 299.8 38.1 275 29-328 55-338 (354)
26 4aez_A CDC20, WD repeat-contai 100.0 1.4E-42 4.9E-47 307.6 34.5 290 4-319 99-395 (401)
27 2ymu_A WD-40 repeat protein; u 100.0 1.2E-41 4.1E-46 316.1 40.3 291 2-327 227-519 (577)
28 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-42 4.9E-47 304.6 31.3 299 2-307 14-364 (372)
29 3vl1_A 26S proteasome regulato 100.0 6.2E-42 2.1E-46 305.6 34.1 302 2-329 62-398 (420)
30 4g56_B MGC81050 protein; prote 100.0 3.1E-42 1.1E-46 300.1 31.1 283 11-326 19-321 (357)
31 4h5i_A Guanine nucleotide-exch 100.0 5.4E-42 1.8E-46 299.3 32.6 280 2-305 20-344 (365)
32 1r5m_A SIR4-interacting protei 100.0 5.3E-42 1.8E-46 306.2 33.0 297 2-328 51-406 (425)
33 1sq9_A Antiviral protein SKI8; 100.0 2.8E-42 9.5E-47 305.5 30.2 278 2-306 22-397 (397)
34 2hes_X YDR267CP; beta-propelle 100.0 3.3E-41 1.1E-45 290.7 36.1 283 27-326 3-305 (330)
35 4gqb_B Methylosome protein 50; 100.0 3.5E-42 1.2E-46 297.4 30.0 275 20-328 16-311 (344)
36 1gxr_A ESG1, transducin-like e 100.0 4.3E-41 1.5E-45 291.1 35.9 272 2-303 57-336 (337)
37 2pm9_A Protein WEB1, protein t 100.0 2.4E-42 8.2E-47 307.8 28.6 282 2-310 18-343 (416)
38 3iz6_a 40S ribosomal protein R 100.0 3.2E-42 1.1E-46 302.9 29.0 290 18-326 46-354 (380)
39 3frx_A Guanine nucleotide-bind 100.0 1E-40 3.5E-45 286.2 37.1 271 29-326 8-296 (319)
40 4gga_A P55CDC, cell division c 100.0 6E-41 2E-45 299.0 37.0 288 1-314 110-405 (420)
41 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-40 4.8E-45 288.5 37.7 286 28-328 5-315 (345)
42 3v7d_B Cell division control p 100.0 7.6E-41 2.6E-45 302.4 37.5 289 3-325 127-442 (464)
43 4ery_A WD repeat-containing pr 100.0 9.1E-41 3.1E-45 286.0 35.8 272 28-327 13-290 (312)
44 4e54_B DNA damage-binding prot 100.0 2.3E-42 7.7E-47 309.5 26.4 282 2-308 125-434 (435)
45 3dm0_A Maltose-binding peripla 100.0 3.1E-41 1.1E-45 319.4 35.4 284 2-304 388-693 (694)
46 2pm9_A Protein WEB1, protein t 100.0 3.3E-42 1.1E-46 306.9 26.6 287 2-305 73-415 (416)
47 3dwl_C Actin-related protein 2 100.0 1.1E-42 3.7E-47 306.0 22.6 293 2-302 17-377 (377)
48 3k26_A Polycomb protein EED; W 100.0 6.2E-42 2.1E-46 299.8 26.4 294 2-304 24-366 (366)
49 1erj_A Transcriptional repress 100.0 9.4E-40 3.2E-44 288.5 40.5 289 19-327 41-363 (393)
50 1r5m_A SIR4-interacting protei 100.0 1.4E-40 4.9E-45 297.0 34.3 281 2-303 114-424 (425)
51 3ei3_B DNA damage-binding prot 100.0 7.2E-41 2.5E-45 295.0 31.8 276 2-304 79-382 (383)
52 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-40 9.6E-45 332.4 39.3 365 2-374 621-1116(1249)
53 3i2n_A WD repeat-containing pr 100.0 2.9E-41 9.9E-46 294.6 27.9 292 2-307 24-356 (357)
54 3vl1_A 26S proteasome regulato 100.0 1E-40 3.5E-45 297.7 30.1 285 2-304 103-419 (420)
55 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-40 1.1E-44 318.5 35.5 196 2-218 23-248 (902)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-39 5.3E-44 292.2 37.0 286 3-326 124-417 (445)
57 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-39 6.3E-44 277.9 34.5 274 2-312 24-304 (313)
58 2xzm_R RACK1; ribosome, transl 100.0 4E-39 1.4E-43 279.3 35.7 253 29-309 12-290 (343)
59 3gre_A Serine/threonine-protei 100.0 2E-40 7E-45 297.3 28.2 282 2-301 69-437 (437)
60 2j04_B YDR362CP, TAU91; beta p 100.0 8.2E-41 2.8E-45 302.8 25.7 286 5-305 170-518 (524)
61 4ggc_A P55CDC, cell division c 100.0 5.7E-39 1.9E-43 275.5 35.7 280 1-306 30-317 (318)
62 2pm7_B Protein transport prote 100.0 3.1E-39 1E-43 274.3 33.3 254 32-303 3-284 (297)
63 1p22_A F-BOX/WD-repeat protein 100.0 7.6E-40 2.6E-44 293.2 31.1 281 2-312 137-422 (435)
64 1pgu_A Actin interacting prote 100.0 6.4E-39 2.2E-43 299.9 36.7 294 2-326 166-541 (615)
65 4a11_B DNA excision repair pro 100.0 2.6E-39 8.7E-44 287.4 32.2 297 2-313 49-374 (408)
66 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-39 7.6E-44 312.6 33.6 316 2-325 104-631 (902)
67 1pgu_A Actin interacting prote 100.0 7.4E-39 2.5E-43 299.5 35.4 291 2-324 24-347 (615)
68 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-39 1.4E-43 310.8 34.6 279 2-306 19-304 (814)
69 3dw8_B Serine/threonine-protei 100.0 1.5E-39 5.1E-44 292.5 28.2 287 2-303 34-445 (447)
70 4aow_A Guanine nucleotide-bind 100.0 9.8E-38 3.4E-42 270.4 38.4 276 26-326 26-316 (340)
71 3gre_A Serine/threonine-protei 100.0 1.6E-39 5.3E-44 291.6 27.4 287 2-314 33-369 (437)
72 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-39 8.3E-44 325.6 31.2 298 2-328 846-1190(1249)
73 1sq9_A Antiviral protein SKI8; 100.0 2.5E-38 8.5E-43 280.2 32.8 275 30-328 8-366 (397)
74 3ei3_B DNA damage-binding prot 100.0 2.1E-38 7.2E-43 279.3 30.2 283 23-326 58-362 (383)
75 3bg1_A Protein SEC13 homolog; 100.0 4.1E-39 1.4E-43 275.9 23.8 253 33-303 8-292 (316)
76 2pm7_B Protein transport prote 100.0 7.1E-38 2.4E-42 265.8 30.4 242 2-253 15-285 (297)
77 3dm0_A Maltose-binding peripla 100.0 2.3E-37 7.7E-42 293.0 36.3 263 30-315 374-643 (694)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-38 8E-43 280.7 26.4 281 2-308 40-346 (402)
79 3bg1_A Protein SEC13 homolog; 100.0 1.7E-38 5.7E-43 272.1 23.0 241 2-253 19-293 (316)
80 1yfq_A Cell cycle arrest prote 100.0 1.4E-37 4.6E-42 269.8 28.9 270 2-301 17-321 (342)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.2E-37 2.1E-41 275.3 33.5 263 7-305 168-443 (445)
82 3jrp_A Fusion protein of prote 100.0 3.4E-37 1.2E-41 271.0 30.3 266 28-311 1-294 (379)
83 3i2n_A WD repeat-containing pr 100.0 9.5E-37 3.2E-41 266.0 32.3 273 32-327 12-332 (357)
84 3zwl_B Eukaryotic translation 100.0 8.3E-36 2.8E-40 261.1 38.3 279 30-327 24-326 (369)
85 4e54_B DNA damage-binding prot 100.0 7.2E-38 2.5E-42 280.3 25.3 277 30-326 111-410 (435)
86 3v7d_B Cell division control p 100.0 2E-36 6.8E-41 273.5 34.4 269 2-301 168-460 (464)
87 3mkq_A Coatomer beta'-subunit; 100.0 8.6E-37 2.9E-41 294.7 33.9 274 29-328 4-282 (814)
88 3k26_A Polycomb protein EED; W 100.0 1.1E-37 3.6E-42 272.9 24.8 277 34-326 14-345 (366)
89 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-36 9.8E-41 258.0 31.9 265 28-328 8-278 (313)
90 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-36 5.7E-41 263.3 30.9 277 32-312 5-345 (351)
91 3dwl_C Actin-related protein 2 100.0 2E-37 6.7E-42 272.5 24.9 250 34-304 7-281 (377)
92 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-37 9.2E-42 273.4 25.2 260 2-303 21-296 (588)
93 1yfq_A Cell cycle arrest prote 100.0 1.8E-36 6.2E-41 262.7 30.1 275 32-323 5-301 (342)
94 3mmy_A MRNA export factor; mRN 100.0 9.6E-37 3.3E-41 266.9 28.2 276 2-303 45-345 (368)
95 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-35 4.1E-40 260.5 31.7 246 34-304 4-274 (372)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.3E-36 2.8E-40 268.2 31.2 277 2-304 10-391 (450)
97 3lrv_A PRE-mRNA-splicing facto 100.0 2E-36 6.7E-41 262.5 24.1 265 3-304 43-333 (343)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 5.4E-35 1.8E-39 259.1 33.6 265 40-328 36-325 (402)
99 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-35 4.5E-40 258.2 28.8 289 2-306 25-338 (355)
100 2xyi_A Probable histone-bindin 100.0 6.8E-35 2.3E-39 260.5 34.1 262 32-306 122-412 (430)
101 1l0q_A Surface layer protein; 100.0 3.2E-34 1.1E-38 253.3 36.9 277 8-314 2-285 (391)
102 2j04_B YDR362CP, TAU91; beta p 100.0 2E-36 6.9E-41 274.1 23.2 251 33-305 129-429 (524)
103 4aez_A CDC20, WD repeat-contai 100.0 1.5E-34 5.1E-39 256.1 34.0 259 36-326 89-359 (401)
104 4a11_B DNA excision repair pro 100.0 3.9E-35 1.3E-39 260.4 30.0 304 16-342 21-368 (408)
105 4gga_A P55CDC, cell division c 100.0 2.9E-34 1E-38 255.8 33.6 255 41-327 108-375 (420)
106 3bws_A Protein LP49; two-domai 100.0 4.4E-34 1.5E-38 255.8 34.9 274 2-304 128-432 (433)
107 3jrp_A Fusion protein of prote 100.0 6.1E-35 2.1E-39 256.6 27.9 243 2-254 17-288 (379)
108 3dw8_B Serine/threonine-protei 100.0 5.1E-35 1.7E-39 263.0 27.7 246 37-309 27-378 (447)
109 3f3f_A Nucleoporin SEH1; struc 100.0 7.5E-35 2.6E-39 252.8 27.5 239 2-254 17-338 (351)
110 3mmy_A MRNA export factor; mRN 100.0 5.4E-34 1.8E-38 249.5 32.4 283 22-330 23-329 (368)
111 3jro_A Fusion protein of prote 100.0 3E-35 1E-39 280.1 25.0 258 31-306 2-287 (753)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-33 3.6E-38 253.4 33.4 253 35-324 130-393 (435)
113 4h5i_A Guanine nucleotide-exch 100.0 3E-34 1E-38 250.4 27.2 239 2-253 77-343 (365)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-33 7E-38 252.6 33.2 271 39-326 5-364 (450)
115 4ggc_A P55CDC, cell division c 100.0 8.5E-33 2.9E-37 237.1 34.2 254 41-326 28-294 (318)
116 2xyi_A Probable histone-bindin 100.0 3.9E-33 1.3E-37 249.1 29.1 238 2-254 134-411 (430)
117 3bws_A Protein LP49; two-domai 100.0 2.6E-31 8.8E-36 237.9 36.4 277 19-327 102-411 (433)
118 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-31 3.8E-36 233.4 32.2 249 22-306 3-273 (355)
119 3jro_A Fusion protein of prote 100.0 1.6E-33 5.6E-38 268.1 22.3 243 2-254 15-286 (753)
120 2w18_A PALB2, fancn, partner a 100.0 1.5E-32 5.1E-37 228.7 25.0 257 10-302 56-355 (356)
121 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-34 8.3E-39 254.6 13.4 219 2-252 58-296 (588)
122 4gq1_A NUP37; propeller, trans 100.0 5.8E-33 2E-37 244.9 20.7 287 5-303 27-388 (393)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-31 4.5E-36 232.1 28.4 230 53-307 47-295 (343)
124 4gq1_A NUP37; propeller, trans 100.0 2E-32 6.9E-37 241.4 21.1 248 3-252 96-388 (393)
125 1l0q_A Surface layer protein; 100.0 3.3E-30 1.1E-34 227.5 35.2 284 2-307 37-345 (391)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.9E-31 1.7E-35 233.9 28.2 296 3-327 69-408 (415)
127 1nir_A Nitrite reductase; hemo 100.0 2.9E-29 1E-33 229.1 33.7 307 3-321 144-531 (543)
128 2w18_A PALB2, fancn, partner a 100.0 1.5E-29 5.2E-34 210.7 23.7 207 2-251 117-355 (356)
129 2ecf_A Dipeptidyl peptidase IV 100.0 3.2E-28 1.1E-32 232.5 31.1 294 2-327 42-435 (741)
130 3u4y_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 206.5 30.8 290 3-307 4-307 (331)
131 1pby_B Quinohemoprotein amine 100.0 1E-26 3.5E-31 200.8 29.9 270 9-314 2-320 (337)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.8E-27 3E-31 206.6 29.6 247 8-286 143-410 (415)
133 1xfd_A DIP, dipeptidyl aminope 100.0 3.9E-27 1.3E-31 224.3 28.2 303 2-327 22-420 (723)
134 3vgz_A Uncharacterized protein 100.0 6.4E-26 2.2E-30 197.1 30.9 265 2-295 46-335 (353)
135 1ri6_A Putative isomerase YBHE 100.0 5.7E-26 1.9E-30 196.6 30.0 293 9-328 6-334 (343)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1E-25 3.6E-30 213.9 27.7 290 2-327 31-411 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 6.7E-25 2.3E-29 208.4 30.0 272 2-306 87-437 (706)
138 2ojh_A Uncharacterized protein 99.9 1.4E-25 4.6E-30 189.9 22.7 254 14-295 18-293 (297)
139 1k32_A Tricorn protease; prote 99.9 3.1E-25 1E-29 218.9 28.0 291 2-327 112-482 (1045)
140 2ojh_A Uncharacterized protein 99.9 4.8E-25 1.7E-29 186.5 23.6 244 60-327 18-282 (297)
141 1nir_A Nitrite reductase; hemo 99.9 2.6E-24 9E-29 196.4 29.8 248 45-316 144-421 (543)
142 1jmx_B Amine dehydrogenase; ox 99.9 6E-24 2E-28 184.4 29.4 281 2-314 5-335 (349)
143 2ecf_A Dipeptidyl peptidase IV 99.9 9.9E-25 3.4E-29 208.3 25.8 273 2-305 114-460 (741)
144 1k32_A Tricorn protease; prote 99.9 2.9E-24 9.8E-29 212.0 28.0 297 2-326 250-617 (1045)
145 3vgz_A Uncharacterized protein 99.9 5.7E-23 1.9E-27 178.5 32.5 261 38-327 40-324 (353)
146 3hfq_A Uncharacterized protein 99.9 7.2E-23 2.5E-27 177.5 32.3 274 17-309 15-324 (347)
147 1ri6_A Putative isomerase YBHE 99.9 2.2E-23 7.5E-28 180.3 27.5 238 2-253 43-308 (343)
148 3o4h_A Acylamino-acid-releasin 99.9 9.5E-24 3.3E-28 195.8 25.7 266 2-304 27-315 (582)
149 3scy_A Hypothetical bacterial 99.9 8.3E-22 2.8E-26 171.8 33.1 303 5-325 10-360 (361)
150 3u4y_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 174.4 27.8 233 2-253 45-304 (331)
151 1z68_A Fibroblast activation p 99.9 2.2E-23 7.7E-28 198.3 22.0 272 2-304 21-391 (719)
152 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-22 4.3E-27 193.3 26.2 284 2-311 66-450 (723)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-22 1E-26 178.1 25.6 235 1-251 41-331 (434)
154 1pby_B Quinohemoprotein amine 99.9 1.5E-22 5.1E-27 174.6 22.6 242 57-327 4-290 (337)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 4.8E-22 1.7E-26 176.7 22.6 259 18-303 23-332 (434)
156 3scy_A Hypothetical bacterial 99.9 2.2E-20 7.5E-25 162.8 31.2 257 2-282 55-360 (361)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.4E-20 4.8E-25 164.1 29.8 274 10-305 4-342 (365)
158 1z68_A Fibroblast activation p 99.9 7.5E-22 2.6E-26 187.8 20.8 287 2-312 65-451 (719)
159 2oiz_A Aromatic amine dehydrog 99.9 2.4E-20 8.3E-25 161.9 28.4 292 6-328 13-359 (361)
160 3hfq_A Uncharacterized protein 99.9 2.1E-20 7.1E-25 162.0 27.5 238 2-253 45-317 (347)
161 3pe7_A Oligogalacturonate lyas 99.9 3.5E-21 1.2E-25 169.5 22.4 271 2-302 41-380 (388)
162 3o4h_A Acylamino-acid-releasin 99.9 7.3E-21 2.5E-25 176.5 21.5 248 38-325 21-291 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-19 3.9E-24 172.9 29.6 306 2-327 22-426 (740)
164 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-19 4.1E-24 157.2 26.2 243 44-327 5-305 (349)
165 3pe7_A Oligogalacturonate lyas 99.9 1.4E-18 4.7E-23 152.9 29.5 264 21-309 13-334 (388)
166 3c5m_A Oligogalacturonate lyas 99.9 6.8E-20 2.3E-24 161.6 21.2 277 2-310 41-390 (396)
167 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.9E-19 1.7E-23 154.4 26.3 238 2-254 45-342 (365)
168 3dsm_A Uncharacterized protein 99.8 3.3E-18 1.1E-22 146.7 29.7 277 16-326 15-321 (328)
169 3azo_A Aminopeptidase; POP fam 99.8 5.7E-18 2E-22 159.6 34.0 283 2-310 29-375 (662)
170 1q7f_A NHL, brain tumor CG1071 99.8 2E-17 6.9E-22 139.1 30.4 239 36-306 27-282 (286)
171 1qks_A Cytochrome CD1 nitrite 99.8 9.8E-17 3.4E-21 146.2 36.3 297 5-320 164-554 (567)
172 3fvz_A Peptidyl-glycine alpha- 99.8 8.6E-18 2.9E-22 144.2 27.6 235 2-253 29-322 (329)
173 3fvz_A Peptidyl-glycine alpha- 99.8 8.9E-18 3E-22 144.2 27.4 219 64-304 69-322 (329)
174 2dg1_A DRP35, lactonase; beta 99.8 2.6E-17 8.9E-22 141.6 29.1 263 2-295 11-301 (333)
175 1q7f_A NHL, brain tumor CG1071 99.8 2.4E-17 8.2E-22 138.6 28.1 228 2-253 35-280 (286)
176 2oiz_A Aromatic amine dehydrog 99.8 1E-17 3.4E-22 145.4 24.9 261 2-286 55-360 (361)
177 2bkl_A Prolyl endopeptidase; m 99.8 1.1E-16 3.6E-21 151.5 33.5 280 4-307 75-400 (695)
178 4a5s_A Dipeptidyl peptidase 4 99.8 9.4E-18 3.2E-22 159.8 26.1 290 2-312 67-457 (740)
179 2dg1_A DRP35, lactonase; beta 99.8 1.8E-16 6.3E-21 136.3 31.2 263 39-325 6-288 (333)
180 3sjl_D Methylamine dehydrogena 99.8 8.3E-17 2.8E-21 137.8 27.3 295 3-327 39-384 (386)
181 2gop_A Trilobed protease; beta 99.8 4E-17 1.4E-21 141.3 25.7 262 7-314 23-339 (347)
182 3azo_A Aminopeptidase; POP fam 99.8 2.4E-17 8.3E-22 155.3 25.5 267 32-322 17-341 (662)
183 3c5m_A Oligogalacturonate lyas 99.8 4.7E-17 1.6E-21 143.4 25.6 260 21-308 13-333 (396)
184 2xdw_A Prolyl endopeptidase; a 99.8 1E-15 3.5E-20 145.1 34.8 286 4-306 79-416 (710)
185 2z2n_A Virginiamycin B lyase; 99.8 1.3E-14 4.4E-19 122.6 36.3 269 2-306 20-297 (299)
186 3no2_A Uncharacterized protein 99.8 5.4E-16 1.8E-20 129.0 27.0 244 57-322 8-271 (276)
187 3e5z_A Putative gluconolactona 99.8 3.8E-16 1.3E-20 132.0 24.7 227 2-253 33-286 (296)
188 1rwi_B Serine/threonine-protei 99.8 1.3E-15 4.3E-20 126.9 26.5 233 2-254 29-265 (270)
189 3no2_A Uncharacterized protein 99.8 1.1E-15 3.7E-20 127.2 25.7 211 6-240 3-230 (276)
190 1rwi_B Serine/threonine-protei 99.8 1.7E-15 5.9E-20 126.1 26.7 241 40-308 25-268 (270)
191 2mad_H Methylamine dehydrogena 99.7 3.6E-14 1.2E-18 123.2 35.4 280 5-311 29-357 (373)
192 3e5z_A Putative gluconolactona 99.7 3.3E-15 1.1E-19 126.2 27.9 244 29-308 18-290 (296)
193 2gop_A Trilobed protease; beta 99.7 6.6E-16 2.3E-20 133.6 23.0 223 62-326 41-311 (347)
194 3dsm_A Uncharacterized protein 99.7 6.4E-15 2.2E-19 126.2 28.0 240 60-326 13-276 (328)
195 1qks_A Cytochrome CD1 nitrite 99.7 2.8E-14 9.5E-19 130.1 32.5 237 58-314 171-438 (567)
196 1yr2_A Prolyl oligopeptidase; 99.7 2E-14 6.7E-19 136.9 32.3 280 4-307 114-444 (741)
197 2xdw_A Prolyl endopeptidase; a 99.7 3.1E-15 1E-19 141.9 25.9 236 2-255 130-416 (710)
198 2z2n_A Virginiamycin B lyase; 99.7 6.7E-13 2.3E-17 112.0 36.0 258 35-324 11-274 (299)
199 2qc5_A Streptogramin B lactona 99.7 3.6E-13 1.2E-17 113.7 34.2 269 2-303 25-299 (300)
200 3c75_H MADH, methylamine dehyd 99.7 3.4E-14 1.2E-18 123.9 25.6 276 6-311 82-409 (426)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-13 3.9E-18 117.7 24.3 236 2-253 23-299 (314)
202 1xip_A Nucleoporin NUP159; bet 99.6 1.5E-14 5.1E-19 124.5 16.6 179 84-290 38-230 (388)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.2E-13 1.8E-17 113.6 26.3 240 38-304 17-299 (314)
204 1yiq_A Quinohemoprotein alcoho 99.6 5.6E-13 1.9E-17 125.0 28.6 288 8-324 70-525 (689)
205 2bkl_A Prolyl endopeptidase; m 99.6 8.3E-14 2.8E-18 131.7 23.2 217 85-322 122-368 (695)
206 3hrp_A Uncharacterized protein 99.6 1E-12 3.4E-17 115.7 28.4 228 2-251 136-408 (409)
207 2qc5_A Streptogramin B lactona 99.6 2E-11 6.9E-16 102.9 34.8 257 37-326 18-281 (300)
208 1kb0_A Quinohemoprotein alcoho 99.6 6.5E-13 2.2E-17 124.3 27.6 279 8-315 77-518 (677)
209 3hrp_A Uncharacterized protein 99.6 2.7E-12 9.1E-17 113.0 29.5 243 40-302 132-408 (409)
210 1yr2_A Prolyl oligopeptidase; 99.6 9.6E-14 3.3E-18 132.2 21.3 238 2-255 168-443 (741)
211 3sjl_D Methylamine dehydrogena 99.6 4.1E-13 1.4E-17 115.0 22.5 236 2-254 83-364 (386)
212 2mad_H Methylamine dehydrogena 99.6 4.8E-12 1.7E-16 109.8 28.4 232 2-254 71-351 (373)
213 3q7m_A Lipoprotein YFGL, BAMB; 99.6 6.5E-12 2.2E-16 109.7 29.0 273 7-313 52-346 (376)
214 3iuj_A Prolyl endopeptidase; h 99.6 9.7E-12 3.3E-16 117.4 31.1 248 36-308 126-409 (693)
215 1mda_H Methylamine dehydrogena 99.6 3.6E-13 1.2E-17 115.6 19.4 281 9-324 33-364 (368)
216 3g4e_A Regucalcin; six bladed 99.5 3.4E-12 1.2E-16 107.6 23.3 223 3-242 19-261 (297)
217 3g4e_A Regucalcin; six bladed 99.5 2.7E-11 9.4E-16 102.0 28.8 225 40-293 14-261 (297)
218 1kb0_A Quinohemoprotein alcoho 99.5 4.9E-12 1.7E-16 118.4 25.6 276 7-304 127-567 (677)
219 3dr2_A Exported gluconolactona 99.5 4.5E-12 1.5E-16 107.3 22.5 218 3-244 51-298 (305)
220 2qe8_A Uncharacterized protein 99.5 1.4E-12 4.7E-17 112.4 19.2 260 2-301 22-318 (343)
221 3c75_H MADH, methylamine dehyd 99.5 9.6E-12 3.3E-16 108.6 22.4 244 2-254 123-403 (426)
222 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-12 3.9E-17 112.8 16.4 171 40-241 39-232 (388)
223 2ghs_A AGR_C_1268P; regucalcin 99.5 4.9E-11 1.7E-15 101.9 24.7 221 3-243 55-292 (326)
224 1yiq_A Quinohemoprotein alcoho 99.5 2.7E-11 9.3E-16 113.6 24.9 273 7-289 120-533 (689)
225 3dr2_A Exported gluconolactona 99.4 1.3E-10 4.5E-15 98.3 26.3 223 82-337 43-294 (305)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.5E-10 5E-15 101.1 26.8 256 7-301 102-375 (376)
227 3hxj_A Pyrrolo-quinoline quino 99.4 5.1E-11 1.7E-15 102.0 23.3 260 9-313 31-292 (330)
228 2ghs_A AGR_C_1268P; regucalcin 99.4 2.9E-10 9.8E-15 97.1 26.9 221 41-293 51-291 (326)
229 2hz6_A Endoplasmic reticulum t 99.4 9.3E-13 3.2E-17 114.4 11.2 258 7-303 8-278 (369)
230 3iuj_A Prolyl endopeptidase; h 99.4 3E-11 1E-15 114.0 22.4 236 2-255 134-407 (693)
231 2qe8_A Uncharacterized protein 99.4 6.8E-11 2.3E-15 101.8 20.8 227 84-326 17-300 (343)
232 1fwx_A Nitrous oxide reductase 99.4 1.2E-10 4E-15 104.2 22.2 313 10-326 17-453 (595)
233 1kv9_A Type II quinohemoprotei 99.4 1.3E-09 4.4E-14 102.0 30.2 279 8-314 66-498 (668)
234 2ad6_A Methanol dehydrogenase 99.4 7.9E-10 2.7E-14 101.3 27.1 276 8-314 62-504 (571)
235 2hz6_A Endoplasmic reticulum t 99.4 3.2E-13 1.1E-17 117.4 4.3 188 94-312 8-200 (369)
236 2ece_A 462AA long hypothetical 99.3 2.8E-09 9.5E-14 92.2 27.6 218 57-292 99-399 (462)
237 1fwx_A Nitrous oxide reductase 99.3 1.2E-09 4.1E-14 97.8 25.2 206 94-315 100-382 (595)
238 1w6s_A Methanol dehydrogenase 99.3 3.4E-09 1.2E-13 97.1 28.8 290 8-324 62-523 (599)
239 2ece_A 462AA long hypothetical 99.3 3E-09 1E-13 91.9 26.0 206 93-313 93-364 (462)
240 1flg_A Protein (quinoprotein e 99.3 7.1E-09 2.4E-13 95.2 29.5 287 10-324 70-536 (582)
241 1mda_H Methylamine dehydrogena 99.3 2.1E-11 7.3E-16 104.7 11.9 234 65-327 47-324 (368)
242 2iwa_A Glutamine cyclotransfer 99.3 9E-10 3.1E-14 89.5 20.2 192 2-213 26-238 (266)
243 2iwa_A Glutamine cyclotransfer 99.3 2.2E-09 7.7E-14 87.1 22.4 206 28-254 9-238 (266)
244 3hxj_A Pyrrolo-quinoline quino 99.3 7.5E-10 2.6E-14 94.7 20.1 255 6-305 69-325 (330)
245 1npe_A Nidogen, entactin; glyc 99.3 2.7E-08 9.2E-13 82.3 28.8 250 8-286 1-263 (267)
246 2ad6_A Methanol dehydrogenase 99.2 1.3E-08 4.5E-13 93.3 26.4 246 8-256 115-497 (571)
247 1npe_A Nidogen, entactin; glyc 99.2 1.6E-07 5.4E-12 77.6 30.0 238 64-327 10-261 (267)
248 1kv9_A Type II quinohemoprotei 99.2 7.5E-09 2.6E-13 96.9 24.1 248 7-256 116-491 (668)
249 1w6s_A Methanol dehydrogenase 99.1 5.2E-08 1.8E-12 89.3 26.9 237 11-256 124-506 (599)
250 3nol_A Glutamine cyclotransfer 99.1 1.3E-08 4.6E-13 81.5 20.1 190 29-242 32-244 (262)
251 3nok_A Glutaminyl cyclase; bet 99.1 2.9E-08 9.9E-13 79.6 20.9 189 29-242 44-254 (268)
252 3nol_A Glutamine cyclotransfer 99.1 1.3E-08 4.5E-13 81.6 18.4 177 2-200 48-244 (262)
253 3mbr_X Glutamine cyclotransfer 99.1 1.3E-07 4.4E-12 75.2 22.4 190 29-242 10-223 (243)
254 3nok_A Glutaminyl cyclase; bet 99.0 2.2E-08 7.6E-13 80.2 17.5 174 3-200 61-254 (268)
255 3v65_B Low-density lipoprotein 99.0 1.2E-06 4.2E-11 76.3 30.3 241 62-326 94-339 (386)
256 4a2l_A BT_4663, two-component 99.0 3.2E-06 1.1E-10 81.2 35.8 273 5-309 181-485 (795)
257 3v64_C Agrin; beta propeller, 99.0 1.5E-06 5.2E-11 74.5 30.3 241 62-326 51-296 (349)
258 1ijq_A LDL receptor, low-densi 99.0 5.9E-06 2E-10 69.9 31.9 240 63-325 9-258 (316)
259 1flg_A Protein (quinoprotein e 99.0 1.7E-07 6E-12 86.0 24.0 242 8-255 117-518 (582)
260 3mbr_X Glutamine cyclotransfer 99.0 1.6E-07 5.4E-12 74.7 19.8 177 2-200 26-223 (243)
261 2p4o_A Hypothetical protein; p 99.0 3E-06 1E-10 71.3 29.0 249 27-295 21-279 (306)
262 4a2l_A BT_4663, two-component 98.9 1.7E-05 5.8E-10 76.2 36.3 270 6-307 224-529 (795)
263 2fp8_A Strictosidine synthase; 98.9 2.1E-06 7.4E-11 72.9 26.6 204 85-314 20-278 (322)
264 3p5b_L Low density lipoprotein 98.9 1.6E-05 5.5E-10 69.5 32.5 241 63-325 91-340 (400)
265 1k3i_A Galactose oxidase precu 98.9 3.6E-07 1.2E-11 85.7 23.5 266 3-293 192-530 (656)
266 2fp8_A Strictosidine synthase; 98.9 3.9E-06 1.3E-10 71.3 26.2 234 40-305 20-314 (322)
267 2p4o_A Hypothetical protein; p 98.8 1.3E-05 4.4E-10 67.5 28.1 235 79-340 27-278 (306)
268 3amr_A 3-phytase; beta-propell 98.8 5.3E-06 1.8E-10 69.5 22.5 202 94-312 39-272 (355)
269 3tc9_A Hypothetical hydrolase; 98.7 1.4E-05 4.8E-10 70.6 26.4 239 2-251 142-428 (430)
270 2xe4_A Oligopeptidase B; hydro 98.7 2.6E-06 9E-11 81.0 22.7 235 2-254 179-459 (751)
271 3sov_A LRP-6, low-density lipo 98.7 4.9E-05 1.7E-09 64.1 27.8 238 63-324 12-257 (318)
272 3qqz_A Putative uncharacterize 98.7 8.9E-06 3E-10 65.6 21.9 202 33-250 21-250 (255)
273 3v9f_A Two-component system se 98.7 0.00034 1.2E-08 67.0 35.6 274 6-308 220-528 (781)
274 3m0c_C LDL receptor, low-densi 98.6 0.00021 7.2E-09 67.7 32.7 239 63-324 403-651 (791)
275 3v9f_A Two-component system se 98.6 7.8E-05 2.7E-09 71.4 30.4 269 6-307 267-571 (781)
276 1n7d_A LDL receptor, low-densi 98.6 1.4E-06 4.6E-11 81.9 16.4 242 62-326 384-635 (699)
277 4a0p_A LRP6, LRP-6, low-densit 98.6 0.00045 1.5E-08 64.0 31.7 227 62-313 13-246 (628)
278 2xe4_A Oligopeptidase B; hydro 98.6 0.00015 5E-09 69.1 29.2 198 40-251 175-396 (751)
279 3qqz_A Putative uncharacterize 98.5 0.00018 6.1E-09 58.1 25.2 200 84-303 27-252 (255)
280 3v65_B Low-density lipoprotein 98.5 0.00035 1.2E-08 60.7 29.5 223 10-253 89-318 (386)
281 3amr_A 3-phytase; beta-propell 98.5 8.2E-05 2.8E-09 62.4 23.3 203 7-220 39-272 (355)
282 4hw6_A Hypothetical protein, I 98.5 4.6E-05 1.6E-09 67.3 21.7 241 40-303 140-432 (433)
283 4hw6_A Hypothetical protein, I 98.5 0.00057 1.9E-08 60.3 28.5 238 2-251 144-431 (433)
284 2xzh_A Clathrin heavy chain 1; 98.4 0.00037 1.3E-08 57.4 24.5 236 5-254 75-333 (365)
285 2xbg_A YCF48-like protein; pho 98.4 0.00057 1.9E-08 57.9 28.6 264 3-301 42-319 (327)
286 3tc9_A Hypothetical hydrolase; 98.4 0.00015 5.3E-09 63.9 23.7 155 85-253 138-301 (430)
287 3v64_C Agrin; beta propeller, 98.4 0.00077 2.6E-08 57.7 30.1 215 18-252 53-274 (349)
288 1ijq_A LDL receptor, low-densi 98.3 0.00087 3E-08 56.5 31.4 223 10-253 3-238 (316)
289 3ei3_A DNA damage-binding prot 98.3 0.0035 1.2E-07 62.2 33.7 218 8-242 523-756 (1158)
290 2xzh_A Clathrin heavy chain 1; 98.3 0.00095 3.3E-08 55.0 27.2 260 17-308 48-336 (365)
291 1bpo_A Protein (clathrin); cla 98.3 0.0014 4.8E-08 56.3 26.7 237 4-254 73-332 (494)
292 3p5b_L Low density lipoprotein 98.3 0.0016 5.6E-08 56.8 32.5 223 10-253 85-320 (400)
293 3s94_A LRP-6, low-density lipo 98.3 0.0012 4.2E-08 61.0 26.7 227 62-312 16-251 (619)
294 3sov_A LRP-6, low-density lipo 98.2 0.0015 5.3E-08 54.9 26.3 224 10-253 6-238 (318)
295 2p9w_A MAL S 1 allergenic prot 98.2 0.0015 5E-08 54.4 24.3 204 86-305 15-266 (334)
296 3kya_A Putative phosphatase; s 98.2 0.0012 4.2E-08 58.6 24.3 235 2-253 144-475 (496)
297 1bpo_A Protein (clathrin); cla 98.2 0.0024 8.4E-08 54.8 28.2 263 17-311 47-338 (494)
298 1k3i_A Galactose oxidase precu 98.1 0.00014 4.9E-09 68.1 17.7 224 3-242 249-530 (656)
299 1n7d_A LDL receptor, low-densi 98.1 0.00013 4.5E-09 68.6 16.3 200 2-221 411-623 (699)
300 3s94_A LRP-6, low-density lipo 98.0 0.0086 3E-07 55.4 34.3 196 2-216 45-247 (619)
301 3kya_A Putative phosphatase; s 98.0 0.0022 7.6E-08 56.9 22.1 215 85-311 140-415 (496)
302 3m0c_C LDL receptor, low-densi 98.0 0.014 4.7E-07 55.5 31.0 216 18-254 404-633 (791)
303 2p9w_A MAL S 1 allergenic prot 97.9 0.0036 1.2E-07 52.1 19.4 165 123-305 10-216 (334)
304 2be1_A Serine/threonine-protei 97.8 0.0015 5E-08 55.1 16.6 114 9-123 11-139 (339)
305 3sre_A PON1, serum paraoxonase 97.7 0.0043 1.5E-07 52.7 17.9 200 3-220 56-308 (355)
306 2ism_A Putative oxidoreductase 97.7 0.021 7.2E-07 48.8 25.3 236 39-292 31-333 (352)
307 2ism_A Putative oxidoreductase 97.7 0.021 7.3E-07 48.7 24.3 232 2-241 36-333 (352)
308 4a0p_A LRP6, LRP-6, low-densit 97.6 0.043 1.5E-06 50.8 32.3 224 10-254 8-238 (628)
309 1xi4_A Clathrin heavy chain; a 97.6 0.0075 2.6E-07 59.8 19.9 216 18-256 48-292 (1630)
310 2vpj_A Kelch-like protein 12; 97.6 0.021 7.2E-07 47.4 20.4 218 64-307 31-281 (301)
311 3ei3_A DNA damage-binding prot 97.5 0.11 3.7E-06 51.8 35.8 129 19-154 493-634 (1158)
312 1xi4_A Clathrin heavy chain; a 97.5 0.015 5E-07 57.9 19.8 236 4-253 73-331 (1630)
313 3pbp_A Nucleoporin NUP82; beta 97.4 0.0097 3.3E-07 51.2 16.4 155 92-249 29-208 (452)
314 3pbp_A Nucleoporin NUP82; beta 97.4 0.0054 1.9E-07 52.7 14.3 141 63-208 40-208 (452)
315 2xbg_A YCF48-like protein; pho 97.4 0.048 1.6E-06 46.0 30.7 253 38-325 35-301 (327)
316 2xn4_A Kelch-like protein 2; s 97.3 0.033 1.1E-06 46.3 18.8 188 94-307 61-279 (302)
317 3sre_A PON1, serum paraoxonase 97.3 0.057 2E-06 45.8 23.4 208 85-312 51-308 (355)
318 3a9g_A Putative uncharacterize 97.3 0.066 2.3E-06 45.7 25.6 237 38-292 28-330 (354)
319 3sbq_A Nitrous-oxide reductase 97.2 0.078 2.7E-06 47.3 20.0 296 10-308 72-482 (638)
320 2vpj_A Kelch-like protein 12; 97.2 0.076 2.6E-06 44.0 21.7 225 7-254 14-279 (301)
321 2xn4_A Kelch-like protein 2; s 97.2 0.077 2.6E-06 44.0 20.8 225 7-255 15-278 (302)
322 2be1_A Serine/threonine-protei 97.2 0.027 9.2E-07 47.4 16.1 195 96-309 11-236 (339)
323 3ii7_A Kelch-like protein 7; p 97.1 0.094 3.2E-06 43.6 21.7 219 63-307 23-275 (306)
324 2g8s_A Glucose/sorbosone dehyd 97.0 0.14 4.8E-06 43.6 25.5 242 2-247 23-348 (353)
325 3a9g_A Putative uncharacterize 97.0 0.14 4.9E-06 43.6 25.7 235 2-241 34-330 (354)
326 1zgk_A Kelch-like ECH-associat 96.9 0.14 4.6E-06 42.7 19.4 225 6-254 23-288 (308)
327 3ii7_A Kelch-like protein 7; p 96.9 0.15 5.2E-06 42.3 21.9 224 8-255 12-274 (306)
328 2uvk_A YJHT; unknown function, 96.8 0.16 5.4E-06 43.3 18.6 31 283-313 315-351 (357)
329 3sbq_A Nitrous-oxide reductase 96.7 0.32 1.1E-05 43.5 26.1 253 56-315 72-429 (638)
330 1zgk_A Kelch-like ECH-associat 96.7 0.22 7.5E-06 41.4 18.7 218 64-308 39-291 (308)
331 4asc_A Kelch repeat and BTB do 96.6 0.26 9.1E-06 41.0 18.8 220 64-309 13-282 (315)
332 2zwa_A Leucine carboxyl methyl 96.5 0.58 2E-05 44.0 21.3 145 6-155 396-576 (695)
333 2g8s_A Glucose/sorbosone dehyd 96.5 0.34 1.2E-05 41.3 25.2 237 40-291 19-340 (353)
334 1tl2_A L10, protein (tachylect 96.4 0.23 7.9E-06 38.6 17.2 180 95-295 4-201 (236)
335 1tl2_A L10, protein (tachylect 96.3 0.084 2.9E-06 41.0 11.8 146 85-248 42-205 (236)
336 4asc_A Kelch repeat and BTB do 96.2 0.43 1.5E-05 39.7 20.0 214 9-242 6-252 (315)
337 2woz_A Kelch repeat and BTB do 96.2 0.45 1.5E-05 39.7 18.8 220 65-310 25-293 (318)
338 2uvk_A YJHT; unknown function, 96.1 0.51 1.8E-05 40.1 17.3 93 7-104 19-128 (357)
339 1cru_A Protein (soluble quinop 95.9 0.41 1.4E-05 42.3 16.1 119 172-293 19-163 (454)
340 3s25_A Hypothetical 7-bladed b 95.9 0.61 2.1E-05 38.6 20.3 179 89-306 58-257 (302)
341 3das_A Putative oxidoreductase 95.8 0.76 2.6E-05 38.8 25.5 233 2-241 37-326 (347)
342 2woz_A Kelch repeat and BTB do 95.5 0.93 3.2E-05 37.7 18.7 137 9-155 17-183 (318)
343 3ott_A Two-component system se 95.3 2 7E-05 40.8 30.5 264 11-309 115-406 (758)
344 1suu_A DNA gyrase subunit A; t 95.3 1.1 3.6E-05 37.4 21.5 205 93-304 6-231 (312)
345 2zwa_A Leucine carboxyl methyl 95.2 2.1 7.3E-05 40.2 20.0 201 93-308 396-639 (695)
346 3l6v_A GYRA, DNA gyrase subuni 95.1 1.4 4.9E-05 37.6 21.8 207 91-304 3-265 (370)
347 1cru_A Protein (soluble quinop 94.8 2 6.8E-05 37.9 19.2 108 125-242 26-163 (454)
348 3uc1_A DNA gyrase subunit A; D 94.6 1.7 5.8E-05 36.4 16.9 204 96-304 4-228 (327)
349 3no0_A DNA gyrase subunit A; D 94.5 1.6 5.4E-05 35.6 18.3 205 86-303 26-245 (276)
350 3ott_A Two-component system se 94.5 3.4 0.00012 39.2 31.5 258 10-304 75-352 (758)
351 1zi0_A DNA gyrase subunit A; b 93.9 2.4 8.1E-05 35.2 20.2 205 93-304 1-226 (307)
352 3uc1_A DNA gyrase subunit A; D 93.9 2.5 8.6E-05 35.3 22.7 212 84-304 42-279 (327)
353 1wp5_A Topoisomerase IV; broke 93.3 3.1 0.00011 34.7 20.0 205 93-304 3-225 (323)
354 3das_A Putative oxidoreductase 92.7 4 0.00014 34.4 27.5 237 84-326 32-317 (347)
355 3qhy_B Beta-lactamase inhibito 92.7 3.5 0.00012 33.6 20.1 204 17-253 41-246 (282)
356 4gq2_M Nucleoporin NUP120; bet 90.7 13 0.00046 36.3 18.0 38 275-312 237-274 (950)
357 1suu_A DNA gyrase subunit A; t 90.7 6.4 0.00022 32.6 25.1 186 60-254 14-232 (312)
358 3qhy_B Beta-lactamase inhibito 90.3 6.4 0.00022 32.0 18.9 222 40-306 25-248 (282)
359 1zi0_A DNA gyrase subunit A; b 89.7 7.7 0.00026 32.1 24.9 235 60-304 9-277 (307)
360 3no0_A DNA gyrase subunit A; D 89.1 7.9 0.00027 31.4 17.0 166 126-304 24-196 (276)
361 3l6v_A GYRA, DNA gyrase subuni 87.7 12 0.00041 31.8 24.7 186 60-254 13-266 (370)
362 4hvt_A Ritya.17583.B, post-pro 87.1 20 0.00068 33.7 23.5 238 3-252 136-429 (711)
363 3s25_A Hypothetical 7-bladed b 86.4 13 0.00043 30.7 21.8 136 4-154 60-214 (302)
364 2wg3_C Hedgehog-interacting pr 85.7 18 0.00063 31.9 14.7 112 180-294 14-159 (463)
365 3b7f_A Glycosyl hydrolase, BNR 84.4 19 0.00063 30.9 26.7 230 85-325 116-391 (394)
366 3kci_A Probable E3 ubiquitin-p 82.8 22 0.00075 30.4 23.7 184 61-253 123-345 (389)
367 4fhn_B Nucleoporin NUP120; pro 82.7 2.8 9.6E-05 42.0 7.5 38 275-312 239-276 (1139)
368 4gq2_M Nucleoporin NUP120; bet 80.7 41 0.0014 32.9 14.5 38 181-220 237-274 (950)
369 1wp5_A Topoisomerase IV; broke 79.0 27 0.00091 29.1 25.0 187 60-253 11-225 (323)
370 3q6k_A 43.2 kDa salivary prote 76.5 35 0.0012 29.1 21.3 168 64-240 123-341 (381)
371 3kci_A Probable E3 ubiquitin-p 74.6 40 0.0014 28.8 29.7 236 61-304 69-345 (389)
372 4hvt_A Ritya.17583.B, post-pro 74.3 58 0.002 30.6 20.4 205 87-306 132-383 (711)
373 4d9s_A UVB-resistance protein 71.3 49 0.0017 28.4 32.1 208 85-304 122-357 (406)
374 3zwu_A Alkaline phosphatase PH 70.6 18 0.00062 33.0 8.5 58 86-143 478-548 (592)
375 3f7f_A Nucleoporin NUP120; nuc 69.6 6.7 0.00023 36.5 5.5 37 275-313 223-259 (729)
376 4a9v_A PHOX; hydrolase, beta-p 68.8 28 0.00097 31.5 9.1 61 84-144 476-549 (592)
377 4d9s_A UVB-resistance protein 65.8 64 0.0022 27.7 25.6 197 40-253 122-357 (406)
378 1zvt_A Topoisomerase IV subuni 59.2 66 0.0023 25.6 13.2 150 138-304 3-163 (256)
379 4a9v_A PHOX; hydrolase, beta-p 58.2 59 0.002 29.6 9.1 59 224-291 477-548 (592)
380 3q6k_A 43.2 kDa salivary prote 56.9 92 0.0032 26.6 22.8 124 180-304 152-306 (381)
381 4fhn_B Nucleoporin NUP120; pro 56.7 12 0.00043 37.4 5.2 37 85-121 239-275 (1139)
382 1zvt_A Topoisomerase IV subuni 53.5 83 0.0028 25.0 18.3 148 97-253 4-163 (256)
383 3b7f_A Glycosyl hydrolase, BNR 51.7 1.1E+02 0.0038 25.9 20.0 51 96-147 23-77 (394)
384 3f7f_A Nucleoporin NUP120; nuc 48.8 36 0.0012 31.8 6.4 29 193-221 231-259 (729)
385 2wg3_C Hedgehog-interacting pr 46.4 1.5E+02 0.0052 26.0 27.9 103 40-147 15-160 (463)
386 3al9_A Plexin-A2; beta-propell 45.7 79 0.0027 28.5 8.1 68 181-248 401-476 (539)
387 1q47_A Semaphorin 3A; beta pro 45.1 98 0.0033 27.5 8.5 68 181-248 405-487 (495)
388 3zwu_A Alkaline phosphatase PH 40.6 2.2E+02 0.0074 26.1 12.6 66 275-341 477-554 (592)
389 1q47_A Semaphorin 3A; beta pro 40.1 83 0.0028 28.0 7.3 65 235-299 422-487 (495)
390 3mvd_K Regulator of chromosome 38.5 1.9E+02 0.0065 24.8 34.7 246 41-304 77-374 (423)
391 4gz8_A Semaphorin-3A; multi-do 33.5 3E+02 0.01 25.6 10.0 55 194-248 430-495 (667)
392 4gz8_A Semaphorin-3A; multi-do 29.3 1.5E+02 0.0051 27.6 7.2 64 236-299 431-495 (667)
393 3ol2_B Plexin-B1; beta-propell 27.5 3.3E+02 0.011 24.4 8.9 68 181-248 388-461 (528)
394 1zvu_A Topoisomerase IV subuni 25.9 4.1E+02 0.014 24.9 15.9 150 93-253 470-633 (716)
395 3mvd_K Regulator of chromosome 25.7 3.1E+02 0.011 23.4 24.4 105 102-212 259-374 (423)
396 3nvq_A Semaphorin-7A; beta-pro 20.9 3.4E+02 0.012 24.8 7.8 55 97-151 382-444 (590)
397 3oky_A Plexin-A2; transmembran 20.5 2.9E+02 0.01 25.8 7.4 68 182-249 401-476 (681)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-49 Score=353.38 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=251.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++.+ +++++.|++|++||+.+++++..+.
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~----l~sgs~D~~i~iwd~~~~~~~~~~~ 189 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMH 189 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE----EEEEETTSCCCEEETTSSCEEECCC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE----EEEEeCCCeEEEEeCCCCceeEEEc
Confidence 579999999999999999999999999999999999999999999996544 4459999999999999988887776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++.|+|+++++++++.|+.|++||+
T Consensus 190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~------ 263 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV------ 263 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC------
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCC------------------CceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF------------------NSIIISCSMDCTCKFWRLLNGTHLSTVT-F 221 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 221 (387)
........+..|...|.+++|+|+.. +.+|++|+.|++|++||+++++++..+. |
T Consensus 264 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 264 ------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp ------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ------CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 55667788899999999999998632 4689999999999999999999998887 7
Q ss_pred CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
...|.+++|+|++++|++++.|+.|++||+.... ....+.+|...|++++|+|++.+|++|+.||+|++|+
T Consensus 338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 7889999999999999999999999999997632 2223457999999999999999999999999999998
Q ss_pred CC
Q 035621 302 IE 303 (387)
Q Consensus 302 ~~ 303 (387)
++
T Consensus 409 ~r 410 (410)
T 1vyh_C 409 CR 410 (410)
T ss_dssp --
T ss_pred CC
Confidence 63
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-48 Score=331.33 Aligned_cols=275 Identities=20% Similarity=0.280 Sum_probs=244.7
Q ss_pred ccccCC----CcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPC----NEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
++|+|+ +.+|++|+.|++|+|||+.+++. ...+.+|...|.+++|+++..+ +++++.|+.|++||+.+++
T Consensus 38 v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~----l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPI----AASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp EEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSE----EEEEETTSEEEEEETTTTE
T ss_pred EEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCE----EEEEeCCCcEEEEECCCCC
Confidence 467764 67999999999999999977653 4568899999999999996544 4458999999999999998
Q ss_pred cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
.+..+. +...+.+++|+|++++|++|+.+|.|++|++++++....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~ 193 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193 (321)
T ss_dssp EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 887776 5578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT 233 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 233 (387)
.....+..+.+|..+|.+++|+|++ ++|++++.|++|++||+++++....+. |...|.+++|+|+
T Consensus 194 ------------~~~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 194 ------------ATGKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp ------------TTTEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ------------CCCcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence 5667788899999999999999985 899999999999999999999888887 6788999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+++|++++.|+.|++||+.+. .....+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999873 2333345799999999999999999999999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.3e-48 Score=334.17 Aligned_cols=272 Identities=17% Similarity=0.213 Sum_probs=243.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc----c
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP----L 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----~ 77 (387)
++|+|++++|++|+.||.|+|||..+++.+..+..|...|.+++|+|++.+ +++++.|+.+++|++.+++. .
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~s~~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY----VACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSE----EEEEETTCEEEEEETTTCSBSCEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCE----EEEEeCCCeEEEEECccCCCcceeE
Confidence 579999999999999999999999999999999999999999999996554 44589999999999987642 2
Q ss_pred ccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 78 HNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 78 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
..+ .|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~-- 213 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV-- 213 (340)
T ss_dssp EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--
T ss_pred EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC--
Confidence 222 3778899999998875 889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPT 233 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~ 233 (387)
........+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+.++ ..|.+++|+|+
T Consensus 214 ----------~~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 214 ----------REGMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp ----------TTCSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred ----------CCCeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 5566788899999999999999985 89999999999999999999988887754 47999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
+++|++|+.||.|++||+.... ....+.+|...|.+++|+|++.+|++|+.||.|++||
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccCc---------EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999987632 2333458999999999999999999999999999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-47 Score=354.78 Aligned_cols=361 Identities=16% Similarity=0.150 Sum_probs=272.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceee-------------------------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAA------------------------- 54 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~------------------------- 54 (387)
++|||+|++||+|+.||+|+|||+.+++ ....+.+|.++|.+++|+|++...+
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 6899999999999999999999986543 3456667777777777777543221
Q ss_pred ----------------eccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621 55 ----------------SHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 55 ----------------~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
..+++++.|++|++||..+++....+. |...|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 136779999999999998887777665 778999999999999999999999999999999998
Q ss_pred eEEcc-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC-------------------------
Q 035621 118 LRSFS-------AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK------------------------- 165 (387)
Q Consensus 118 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------- 165 (387)
+..+. +|.+.|.+++|+|++++|++++.|++|++||+...........
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 88874 7999999999999999999999999999999864321100000
Q ss_pred ------CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE--------------------
Q 035621 166 ------NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-------------------- 219 (387)
Q Consensus 166 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------- 219 (387)
.........+.+|...|.+++|+|++ ++|++++.|++|++||+.+++....+
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 00122345667899999999999975 89999999999999999876543221
Q ss_pred ---------------------------------------------------------------ecCCceeEEEeCCCCCe
Q 035621 220 ---------------------------------------------------------------TFPCAIMGLALDPTETD 236 (387)
Q Consensus 220 ---------------------------------------------------------------~~~~~v~~~~~~~~~~~ 236 (387)
.+...+.+++|+|+|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~ 462 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF 462 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE
Confidence 11234678999999999
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-ccEEEE-eecc
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK-RQVVMV-LKNE 314 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~ 314 (387)
|++|+.|+.|++||+..... ..... .+|...|++++|+|+|++|++++.|++|++|++.+ ++++.. ....
T Consensus 463 lasgs~D~~v~lwd~~~~~~-------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASV-------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp EEEEETTSEEEEEEEETTEE-------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred EEEeCCCCeEEEEEccCCce-------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence 99999999999999976321 11112 47999999999999999999999999999999998 666554 2332
Q ss_pred cCCCceeEEEEec--------CCCceeeEEEecCCCCC--CCCC----cceee-e--ccceeccccccchhhhce
Q 035621 315 LAGSISEMVIATG--------IGGSRGCGVVKTGKAGN--DSGG----GVFEM-Y--GEKLLDLSIKNTIELENV 372 (387)
Q Consensus 315 ~~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~----~~~~~-~--~~~~~~~~~~~~~~~~~~ 372 (387)
+.+.|++++|++. .++.+.+|.+..+.... ...+ .+..+ | ..+.+..+.|+++++|+.
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence 4568999877653 34556888776544211 1111 11111 1 112566668888888875
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.8e-47 Score=322.14 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=240.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++.+ +++++.|+.|++||+.+++.+..+.
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~s~s~d~~i~vwd~~~~~~~~~~~ 94 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW----IIVGSDDFRIRVFNYNTGEKVVDFE 94 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCE----EEEECCCCEEEEEECCCCcEEEEEe
Confidence 689999999999999999999999999999999999999999999996544 4459999999999999998887776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-- 172 (304)
T 2ynn_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-- 172 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--
T ss_pred CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--
Confidence 7789999999999999999999999999999887 45567889999999999999 678999999999999999942
Q ss_pred ccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621 159 DEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 236 (387)
...... ...|...+..+.++|.+++.+|++++.|++|++||+++++++..+. |...|.+++|+|++++
T Consensus 173 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 173 ----------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp ----------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred ----------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 222233 3456688999999987767899999999999999999999999988 7789999999999999
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCc
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK--NLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~ 305 (387)
|++++.||.|++||..+. .+...+..|...+.+++|+|++. ++++|+.| .+.+|++.+.
T Consensus 243 l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEETTSCEEEEETTTC---------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred EEEEcCCCeEEEEECCCC---------ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 999999999999999873 23333457888999999999875 57777655 4778887653
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=330.54 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=226.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC-----------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG-----------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN 70 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~ 70 (387)
++|+|||++|++++ |+++++||.... ........|...|.+++|+|+..+ ++++.||+|++||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l-----~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGI-----LVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEE-----EEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeE-----EEEECCCEEEEEe
Confidence 57999999999887 678888873211 111112235677999999997543 3488999999999
Q ss_pred ccCCCccccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEe
Q 035621 71 LWSSTPLHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGG 144 (387)
Q Consensus 71 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 144 (387)
+.+++..... .|.+.|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|...|++++|+|++. +|++++
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred ccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec
Confidence 9998776543 3788999999999999999999999999999999999999999999999999999875 789999
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-F 221 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 221 (387)
.|+.|++||++ .......+ ..|...+.+++|+|.. +++|++|+.||+|++||+++++++..+. |
T Consensus 190 ~D~~v~iwd~~------------~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 190 EDNRILLWDTR------------CPKPASQIGCSAPGYLPTSLAWHPQQ-SEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp TTSCEEEEETT------------SSSCEEECC----CCCEEEEEECSSC-TTEEEEEETTSEEEEEESCC--CCEEEECC
T ss_pred ccccccccccc------------ccceeeeeecceeeccceeeeecCCC-CcceEEeccCCcEEEEECCCCcEEEEEcCC
Confidence 99999999993 44444444 3456678999999864 5789999999999999999999998887 7
Q ss_pred CCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEE
Q 035621 222 PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYI 299 (387)
Q Consensus 222 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i 299 (387)
...|++++|+|++ ++|++|+.|+.|++||+..+. +.. ..+|.+.|++++|+|+++ +|++++.||+|++
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------~~~-~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------LFR-SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------EEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------EEE-EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 7899999999998 578999999999999998732 222 358999999999999986 5679999999999
Q ss_pred EECCCccE
Q 035621 300 WEIEKRQV 307 (387)
Q Consensus 300 wd~~~~~~ 307 (387)
|++.+..+
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99987644
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-47 Score=334.35 Aligned_cols=280 Identities=17% Similarity=0.197 Sum_probs=226.6
Q ss_pred ccccCCCcEEEeeCC------CCcEEEEeCCCCceeEe----ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTSSP------EGPITAYNPSSGAILAH----FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
++|||||++||+|+. |+.|++|+..++..... ..+|...|.+++|+|+..++. ++.||+|++||+
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-----~s~dg~v~lWd~ 122 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-----ASDSGAVELWEI 122 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-----EETTSCEEEC--
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-----EECCCEEEEeec
Confidence 689999999999997 78899999887765433 346888999999999765443 678999999999
Q ss_pred cCCCccccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeC
Q 035621 72 WSSTPLHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGD 145 (387)
Q Consensus 72 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 145 (387)
.+++..... .|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|++++|+|++. ++++++.
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc
Confidence 888654432 3678999999999999999999999999999999999999999999999999999875 7899999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA 224 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 224 (387)
||.|++||++.. ..........|...+.+++|+|+. +.+|++|+.|+.|++||+++++++..+. +...
T Consensus 203 dg~v~~wd~~~~----------~~~~~~~~~~~~~~v~~v~~sp~~-~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 203 DGRILLWDTRKP----------KPATRIDFCASDTIPTSVTWHPEK-DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp TSCEEECCTTSS----------SCBCBCCCTTCCSCEEEEEECTTS-TTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred CCceEEEECCCC----------ceeeeeeeccccccccchhhhhcc-cceEEEeecccceeEEECCCCcEeEEEecccee
Confidence 999999999431 111222334577789999999875 5789999999999999999999988887 6789
Q ss_pred eeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 035621 225 IMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 225 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 302 (387)
|++++|+|++ ++|++++.|+.|++||++++ ++... .+|.+.|++++|+| ++++|++++.||+|++|++
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFS---------EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSC---------EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 9999999987 57899999999999999873 22222 27999999999998 7999999999999999999
Q ss_pred CCccE
Q 035621 303 EKRQV 307 (387)
Q Consensus 303 ~~~~~ 307 (387)
.+...
T Consensus 342 ~~~~~ 346 (357)
T 4g56_B 342 PSEGR 346 (357)
T ss_dssp C----
T ss_pred CCCCc
Confidence 76433
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-47 Score=330.40 Aligned_cols=295 Identities=16% Similarity=0.180 Sum_probs=237.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeE---eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--c
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA---HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--P 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~ 76 (387)
++|+|+|++||+|+.|+.|+|||+.++.... ...+|...|.+++|+|++.+ +++++.|+.+++|++..+. .
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~----l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY----LASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE----EEEEETTSCEEEEEECCC-EEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE----EEEEECCCcEEEEEccCCCeEE
Confidence 6899999999999999999999998776432 23689999999999996544 4459999999999998764 3
Q ss_pred ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
+..+. |...|.+++|+|++++|++|+.|+.|++||+.+++ ++..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 44444 77899999999999999999999999999998763 456778999999999999999999999999999999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---------------cEEE
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---------------THLS 217 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~ 217 (387)
|+.. ........+.+|...|.+++|+|++ ++|++++.|++|++||.... +++.
T Consensus 178 ~~~~----------~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 178 REEE----------DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEET----------TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EecC----------CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 9832 1223456788999999999999985 89999999999999996422 2233
Q ss_pred EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCC
Q 035621 218 TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAED 294 (387)
Q Consensus 218 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d 294 (387)
.+. +...|.+++|+|++..|++++.|+.|++|+....................+|...|++++|+|++ .+|++|+.|
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence 333 56789999999999999999999999999987643222211112233446899999999999998 499999999
Q ss_pred CcEEEEECCCccEEEEee
Q 035621 295 GSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 295 g~i~iwd~~~~~~~~~~~ 312 (387)
|+|++|++.+++.+....
T Consensus 326 g~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 326 GEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp SCEEEEEECC--------
T ss_pred CcEEEEEecCCCCccccc
Confidence 999999999988766543
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-46 Score=324.49 Aligned_cols=273 Identities=18% Similarity=0.232 Sum_probs=242.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP----- 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----- 76 (387)
++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++.. +++++.|+.+++|++.....
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~----lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA----IACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE----EEEESTTSEEEEEECCCCTTCCSGG
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE----EEEeeCCCCEEEEEEeccccccccc
Confidence 579999999999999999999999999999999999999999999996554 44599999999999865421
Q ss_pred -cccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 035621 77 -LHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATV 152 (387)
Q Consensus 77 -~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 152 (387)
...+ .|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+| ++++|++|+.||.|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 1112 2778899999999999999999999999999999999999999999999999988 56899999999999999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEE
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLA 229 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~ 229 (387)
|+ .....+..+..|...|.+++|+|++ .+|++++.|++|++||+++++.+..+... ..+.+++
T Consensus 226 d~------------~~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 226 DM------------RSGQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp ET------------TTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EC------------CCCcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 99 5666788889999999999999985 89999999999999999999887777633 4789999
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
|+|++++|++++.|+.|++||+..+. . ...+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~--------~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGS--------R-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCS--------E-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCc--------e-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999997632 2 233458999999999999999999999999999996
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-46 Score=331.10 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=243.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------ 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------ 75 (387)
++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++.+ +++++.|+.+++|++.+..
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~----las~~~d~~v~iw~~~~~~~~~~~~ 147 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS----VACGGLDSACSIFNLSSQADRDGNM 147 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE----EEECCSSSCCEEEECCCCSSCCCSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE----EEEeeCCCcEEEEECCCCccccCCc
Confidence 579999999999999999999999999999999999999999999996654 4459999999999997542
Q ss_pred -ccccc-CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEc-----cCCCCCeEEEEEcC-CCCEEEEEeCC
Q 035621 76 -PLHNI-PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSF-----SAHDKPVSCLKISP-DGSLLISGGDD 146 (387)
Q Consensus 76 -~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d 146 (387)
....+ .|...+.++.|.|+ +..|++|+.|++|++||+++++.+..+ .+|...|.+++|+| +++++++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 11222 36678999999996 457999999999999999999988776 57899999999987 88999999999
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---- 222 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---- 222 (387)
+.|++||++. ....+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.+..+...
T Consensus 228 ~~v~~wd~~~-----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 228 TTVRLWDLRI-----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SCEEEEETTT-----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred CeEEEEECCC-----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 9999999942 345677888999999999999985 89999999999999999999988887632
Q ss_pred ----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEE
Q 035621 223 ----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVY 298 (387)
Q Consensus 223 ----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 298 (387)
..+.+++|+|+|++|++|+.||.|++||........ .+.....+|.+.|++++|+|+|++|++|+.||+|+
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL-----NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE-----EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE-----EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 248999999999999999999999999987643211 11122357999999999999999999999999999
Q ss_pred EEECCCcc
Q 035621 299 IWEIEKRQ 306 (387)
Q Consensus 299 iwd~~~~~ 306 (387)
+|++...+
T Consensus 370 iW~~~~~~ 377 (380)
T 3iz6_a 370 IWAFSGHR 377 (380)
T ss_dssp EEECCSSS
T ss_pred EEecCCCc
Confidence 99998764
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-46 Score=348.80 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=258.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc--cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL--HN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~--~~ 79 (387)
++|+|||++||+++ ++.|++||+.+++....+.+|...|++++|+|++.+++ +++.|++|++||+.+++.. ..
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la----sg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA----SGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE----EEETTSEEEEEESSSTTCCEEEE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEE----EEeCCCCEEEeECCCCcceeeEe
Confidence 68999999999998 56999999999999999999999999999999765554 4999999999999765432 23
Q ss_pred c-CCCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621 80 I-PVPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP 153 (387)
Q Consensus 80 ~-~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 153 (387)
+ .|..+|.+++|+|++++|++++.+ +.|++|| .++....+.+|...|++++|+|++. .|++++.|++|++||
T Consensus 99 ~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd 176 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176 (611)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 3 367899999999999999998765 3678887 5667778899999999999999987 699999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE--------ecCCce
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV--------TFPCAI 225 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~v 225 (387)
. ........+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+ .|...|
T Consensus 177 ~------------~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 177 G------------PPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp T------------TTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred C------------CCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 8 4556778889999999999999985 89999999999999999999988887 367899
Q ss_pred eEEEeCCCCCeEEEEccCCcEEEEeccccccccccc----------------------------------cceeEeeccc
Q 035621 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK----------------------------------GQELVTLANR 271 (387)
Q Consensus 226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~~ 271 (387)
.+++|+|++++|++++.|+.|++||+.++....... .......+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 999999999999999999999999998754322110 0112234468
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|...|++++|+|+|++|++++.|++|++||+.+++....+...+...|.++.|++
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 9999999999999999999999999999999999988777444566888887753
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.1e-46 Score=320.58 Aligned_cols=283 Identities=16% Similarity=0.269 Sum_probs=241.4
Q ss_pred ccccCCC-cEEEeeCCCCcEEEEeCCC-----CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCN-EVILTSSPEGPITAYNPSS-----GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|.+++|+|++.+ +++++.|++|++||+.+++
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~----l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY----ALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE----EEEEeCCCEEEEEECCCCC
Confidence 5788865 8999999999999999864 3457788999999999999996554 4459999999999999998
Q ss_pred cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC------CCEEEEEeCCCc
Q 035621 76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD------GSLLISGGDDGV 148 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~ 148 (387)
.+..+. |...|.+++|+|++.+|++|+.|+.|++||++ ++++..+.+|...|.+++|+|. +..+++++.|+.
T Consensus 99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~ 177 (319)
T 3frx_A 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence 887765 77899999999999999999999999999985 5677888899999999999985 448999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL 228 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 228 (387)
|++||+ ........+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..+..+.++
T Consensus 178 i~~wd~------------~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 243 (319)
T 3frx_A 178 VKAWNL------------NQFQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243 (319)
T ss_dssp EEEEET------------TTTEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred EEEEEC------------CcchhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence 999999 4556677888999999999999985 89999999999999999999999999988999999
Q ss_pred EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
+|+|++.++++++.+ .+++|++........... ........|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 244 ~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 244 AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999998887755 599999876432221111 011112356778999999999999999999999999998764
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-45 Score=312.32 Aligned_cols=274 Identities=20% Similarity=0.207 Sum_probs=238.2
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
+...++.+|.+.|.+++|+|++.+ +++++.||.|++||+.+++.+..+. +..+|.+++|+|++++|++|+.|+.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~----l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPW----VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSE----EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCE----EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 456778899999999999996554 4458999999999999998887776 56789999999999999999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+.. .......+.+|...|.+++|
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~-----------~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-----------NWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG-----------TTEEEEEECCCCSCEEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC-----------CcchhhhhcccCCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999832 22345678899999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCC--CCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDP--TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
+|.. +.+|++|+.|++|++||++++.....+. +...+..+.|+| ++.+|++++.|+.|++||+++.
T Consensus 149 ~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------- 218 (304)
T 2ynn_A 149 NPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (304)
T ss_dssp CTTC-TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred CCCC-CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence 9853 4899999999999999999887766665 456788999986 6789999999999999999873
Q ss_pred eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
.....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+. ..+.++++.+..
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~ 282 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTG 282 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-SSEEEEEECTTC
T ss_pred ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-ccEEEEEECCCC
Confidence 2333446899999999999999999999999999999999999999998764 478888765543
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=310.79 Aligned_cols=276 Identities=14% Similarity=0.190 Sum_probs=239.8
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--cc-CCCCCeeeEEeccCCCEEEEecCC
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--NI-PVPEPVAPLATTADGSYLFTGGLS 104 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d 104 (387)
+.....+++|.++|.+++|+|+.......+++|+.|++|++|++.+++... .+ .|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 445567789999999999998543344567779999999999998765432 23 377899999999999999999999
Q ss_pred CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEE
Q 035621 105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA 184 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 184 (387)
+.|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+ ........+..|...+.+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~------------~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV------------ESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET------------TTCSEEEEEECSSSCEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc------------CCCceeEEecCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999 456667788889999999
Q ss_pred EEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 185 ITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 185 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
++|+|++ ++|++++.|+.|++||+++++.+..+. +...|.+++|+|++++|++++.|+.|++||++..
T Consensus 170 ~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------- 238 (321)
T 3ow8_A 170 IAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------- 238 (321)
T ss_dssp EEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------
T ss_pred EEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------
Confidence 9999985 899999999999999999999998887 6788999999999999999999999999999863
Q ss_pred eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.....+.+|...|.+++|+|++++|++++.|++|++||+.+++++..+..|. +.|.++.|++.
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~ 301 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGVKYNGN 301 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTT
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEEEECCC
Confidence 2233456899999999999999999999999999999999999999998774 58988888753
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-44 Score=333.96 Aligned_cols=293 Identities=22% Similarity=0.322 Sum_probs=256.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++++.|+.|++||. +++.+..+.+|..+|.+++|+|+.... ++++.|+.|++||...........
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l----~t~~~d~~i~~w~~~~~~~~~~~~ 342 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI----ASASDDKTVKLWNRNGQHLQTLTG 342 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE----EEEETTSCEEEEETTSCEEEEECC
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE----EEEeCCCeEEEEeCCCCeeEEEeC
Confidence 578999999999999999999996 678888899999999999999965444 448899999999987655544445
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
+...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||.
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~------- 414 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR------- 414 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-------
Confidence 7789999999999999999999999999995 67888889999999999999999999999999999999986
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 240 (387)
....+..+.+|...|.+++|+|++ ++|++++.|++|++||. +++.+..+. +...|.+++|+|++++|+++
T Consensus 415 ------~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 415 ------NGQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp ------TCCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred ------CCCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 345678889999999999999885 89999999999999996 456666665 78899999999999999999
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCce
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS 320 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 320 (387)
+.|+.|++||... .....+.+|...|++++|+|++++|++++.||.|++||. +++++..+.+|. +.|+
T Consensus 486 ~~d~~i~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~-~~v~ 553 (577)
T 2ymu_A 486 SDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVW 553 (577)
T ss_dssp ETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS-SCEE
T ss_pred eCCCEEEEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC-CCEE
Confidence 9999999999643 223334589999999999999999999999999999995 688999998874 5999
Q ss_pred eEEEEecC
Q 035621 321 EMVIATGI 328 (387)
Q Consensus 321 ~~~~~~~~ 328 (387)
+++|++..
T Consensus 554 ~~~fs~dg 561 (577)
T 2ymu_A 554 GVAFSPDG 561 (577)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCC
Confidence 99997643
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-44 Score=312.98 Aligned_cols=281 Identities=16% Similarity=0.168 Sum_probs=231.2
Q ss_pred cC-CCcEEEeeCCCCcEEEEeCCCC-------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 5 LP-CNEVILTSSPEGPITAYNPSSG-------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 5 s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+| ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|+..+. ++++.|++|++||+.+++.
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l----~s~s~D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA----ISSSWDKTLRLWDLRTGTT 110 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE----EEEETTSEEEEEETTSSCE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE----EEEcCCCcEEEEECCCCcE
Confidence 55 8999999999999999998743 4567789999999999999966544 4589999999999999988
Q ss_pred ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCC----------CEEEE
Q 035621 77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDG----------SLLIS 142 (387)
Q Consensus 77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~----------~~l~~ 142 (387)
+..+. |...|.+++|+|++++|++++.|+.|++||+... ..... ..|...|.+++|+|++ .++++
T Consensus 111 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 87765 7789999999999999999999999999999743 33333 2788999999999986 78999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEec
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVTF 221 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 221 (387)
++.|+.|++||. .......+.+|...|.+++|+|++ ++|++++.|+.|++||+. .......+.+
T Consensus 190 ~~~d~~i~iwd~-------------~~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 190 VGWDGRLKVWNT-------------NFQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp EETTSEEEEEET-------------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEEC
T ss_pred EcCCCEEEEEcC-------------CCceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecC
Confidence 999999999996 234566788999999999999985 899999999999999994 4555666667
Q ss_pred CCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc--ccccce--eEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621 222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ--MHKGQE--LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
...|.+++|+|++.++++ +.|+.|++|++.+..... ...... ......+|...|++++|+|+|++|++|+.||.|
T Consensus 255 ~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence 778999999999987764 568889999998754321 100000 000113688899999999999999999999999
Q ss_pred EEEECCCcc
Q 035621 298 YIWEIEKRQ 306 (387)
Q Consensus 298 ~iwd~~~~~ 306 (387)
++|++++++
T Consensus 334 ~~w~~~~g~ 342 (343)
T 2xzm_R 334 RTFSFETSA 342 (343)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEccC
Confidence 999987653
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=311.49 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=221.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEec-cC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHF-SG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--- 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--- 74 (387)
++|+|+ +||+|+.|+.|++||+.++ +....+ .+ |..+|.+++|+|++.+ +++++.|+.|++||+...
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~----las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL----LAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSE----EEEEETTSCEEEEEC------
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCE----EEEEeCCCcEEEEEcccCcCc
Confidence 456776 9999999999999999875 445555 44 9999999999996544 445899999999998542
Q ss_pred ----CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 75 ----TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 75 ----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
+....+. |...|.+++|+|++++|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++++|++++.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 2333343 7789999999999999999999999999999432 466778899999999999999999999999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--------cEEE
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--------THLS 217 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~ 217 (387)
|++|++||+.. ....++..+.+|...|.+++|+|+..+.+|++++.|++|++||+..+ .+..
T Consensus 174 D~~i~iW~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 174 DDTVRIWKDYD----------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp TSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCeEEEEECCC----------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 99999999832 12256778899999999999999865578999999999999998754 2333
Q ss_pred EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEec--CCCEEEEEe
Q 035621 218 TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMN--EGKNLVSAA 292 (387)
Q Consensus 218 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~ 292 (387)
.+. |...|.+++|++++ +|++++.||.|++|+...+.. .........|.. .|.+++|+| ++++|++|+
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW------KVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE------EEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce------EEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 443 67789999999765 899999999999999875321 122223346777 899999999 789999999
Q ss_pred CCCcEEEEECCC
Q 035621 293 EDGSVYIWEIEK 304 (387)
Q Consensus 293 ~dg~i~iwd~~~ 304 (387)
.||+|++||+++
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999865
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-44 Score=318.59 Aligned_cols=270 Identities=16% Similarity=0.257 Sum_probs=242.5
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA 109 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 109 (387)
...+.+|..+|++++|+|+.. .+++++.||.|++||+.+++....+. |...|.+++|+|++++|++|+.|+.|++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred eEeecccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 456778999999999999654 45559999999999999999888777 6789999999999999999999999999
Q ss_pred EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
||+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||+ .....+..+.+|...|.++.++|
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~------------~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------------QTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET------------TTCCEEEEEECCSSCEEEEEECT
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC------------CCCcEEEEEeCCCccEEEEEECC
Confidence 999999999999999999999999999999999999999999999 56677888999999999999988
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC--------------------CCeEEEEccCCcEEE
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT--------------------ETDFFAAGSDGLIYK 248 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~i 248 (387)
++ .+|++|+.|++|++||+.++++...+. |...|.+++|+|+ +.+|++|+.|+.|++
T Consensus 245 ~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 245 DG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp TS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 75 899999999999999999999888886 7789999999996 678999999999999
Q ss_pred EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
||+.++ . ....+.+|...|++++|+|++++|++|+.||.|++||+.+++++..+..|. ..|+++.|.+..
T Consensus 323 wd~~~~--------~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~ 392 (410)
T 1vyh_C 323 WDVSTG--------M-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFVTSLDFHKTA 392 (410)
T ss_dssp EETTTT--------E-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-SCEEEEEECSSS
T ss_pred EECCCC--------c-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-CcEEEEEEcCCC
Confidence 999873 2 233345799999999999999999999999999999999999999998875 489999887643
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-43 Score=303.64 Aligned_cols=275 Identities=20% Similarity=0.318 Sum_probs=239.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++.+..+.
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~~~~~~~~~ 104 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLK 104 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCE----EEEECCCCEEEEEECCCCcEEEEEc
Confidence 579999999999999999999999999999999999999999999996544 4458999999999999998887776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+
T Consensus 105 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~------ 178 (312)
T 4ery_A 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT------ 178 (312)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC------
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc---eeEEEeCCCCC
Q 035621 161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA---IMGLALDPTET 235 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~---v~~~~~~~~~~ 235 (387)
.....+..+ ..+..++..++|+|++ ++|++++.|+.|++||+++++.+..+. +... +......+++.
T Consensus 179 ------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 179 ------ASGQCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp ------TTCCEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred ------CCCceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 344444444 3466789999999885 899999999999999999999988886 3222 33334446788
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIE 303 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 303 (387)
++++|+.||.|++||+... .....+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECCTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999999873 33344568999999999999999999987 69999999864
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-43 Score=313.52 Aligned_cols=275 Identities=17% Similarity=0.253 Sum_probs=230.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC------------------CceeEEEcCccceeeeccccCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS------------------PRRGLTFAGKPFIAASHISPTTGS 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~~~~~~d 63 (387)
++|||||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++.++ ++++.|
T Consensus 70 v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l----~s~~~d 144 (393)
T 1erj_A 70 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL----ATGAED 144 (393)
T ss_dssp EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE----EEEETT
T ss_pred EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE----EEEcCC
Confidence 57999999999987 68999999999998888765542 38999999965544 458999
Q ss_pred CeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEE
Q 035621 64 GSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLI 141 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 141 (387)
+.|++||+.+++.+..+. |...|.+++|+|++++|++++.|+.|++||++++++...+. +...+.+++|+| ++++++
T Consensus 145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEE
T ss_pred CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEE
Confidence 999999999998877776 77889999999999999999999999999999998887775 567899999999 899999
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCCccceEee-------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
+++.|+.|++||+. ....+..+ .+|...|.+++|+|++ ++|++++.|++|++||+++..
T Consensus 224 ~~s~d~~v~iwd~~------------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 224 AGSLDRAVRVWDSE------------TGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEETTSCEEEEETT------------TCCEEEEEC------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC----
T ss_pred EEcCCCcEEEEECC------------CCcEEEeecccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCC
Confidence 99999999999983 33333333 5789999999999885 899999999999999997642
Q ss_pred ------------EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 215 ------------HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 215 ------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
+...+. |...|.+++|+|++.+|++++.|+.|++||..++. ....+.+|...|.+++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---------~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---------PLLMLQGHRNSVISVAV 360 (393)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEE
T ss_pred CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------EEEEECCCCCCEEEEEe
Confidence 333443 67789999999999999999999999999998732 23334589999999999
Q ss_pred ec------CCCEEEEEeCCCcEEEEECCCc
Q 035621 282 MN------EGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 282 s~------~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
++ ++++|++|+.||+|++|++...
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 86 6789999999999999998654
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-43 Score=303.66 Aligned_cols=272 Identities=18% Similarity=0.282 Sum_probs=237.0
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
.+...++.+|..+|.+++|+|++.+ +++++.||.|++||+.+++.+..+. +...|.+++|+|++++|++|+.|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~----l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRL----LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSE----EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCE----EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 4556788999999999999996554 4459999999999999998877766 5678999999999999999999999
Q ss_pred EEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 107 VYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 107 i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
+++|++.++ +....+.+|...|.++.|++++. +++++.|+.|++||+ .....+..+.+|...|
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~------------~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI------------ETGQQTTTFTGHTGDV 187 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET------------TTTEEEEEECCCSSCE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC------------CCCcEEEEEcCCCCce
Confidence 999999775 34566789999999999998765 899999999999999 5667788899999999
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 261 (387)
.+++|+|++ .++++|+.|++|++||++++.+...+. |...|.+++|+|++++|++++.||.|++||++...
T Consensus 188 ~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------ 259 (340)
T 1got_B 188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ 259 (340)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------
Confidence 999999975 899999999999999999999998887 77899999999999999999999999999998732
Q ss_pred cceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 262 GQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 262 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.+..+ ...+...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|. +.|+++.|++.
T Consensus 260 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~s~d 323 (340)
T 1got_B 260 --ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-NRVSCLGVTDD 323 (340)
T ss_dssp --EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTT
T ss_pred --EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC-CcEEEEEEcCC
Confidence 22222 12334579999999999999999999999999999999999998875 58999988754
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-43 Score=303.81 Aligned_cols=286 Identities=17% Similarity=0.231 Sum_probs=239.7
Q ss_pred ccccCC-CcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPC-NEVILTSSPEGPITAYNPSSGA-----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
|+|+|+ +++||+|+.||+|+|||+.+.+ +...+.+|...|.+++|+|++.++ ++++.|+.|++|+.....
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l----~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA----LSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE----EEEETTSEEEEEETTTTE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE----EEEcccccceEEeecccc
Confidence 589998 6899999999999999987643 467789999999999999966544 458999999999998876
Q ss_pred cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 035621 76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDG--SLLISGGDDGVIAT 151 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i 151 (387)
...... +...+..+.+++++++|++++.|+.+++||+..... .....+|...+..++|++++ .++++++.|+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 665554 556788899999999999999999999999876644 34456899999999999864 57889999999999
Q ss_pred EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD 231 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 231 (387)
||+ ........+.+|..+|.+++|+|++ ++|++++.|+.|++||+++.+++..+.+...+.+++|+
T Consensus 200 ~d~------------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 265 (340)
T 4aow_A 200 WNL------------ANCKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS 265 (340)
T ss_dssp EET------------TTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred EEC------------CCCceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecC
Confidence 999 5667788889999999999999875 89999999999999999999999999999999999999
Q ss_pred CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
|++. +++++.|+.|++||++...................|...|++++|+|++++|++|+.||.|+|||+++|+
T Consensus 266 ~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 266 PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9875 5566779999999998765444333333334455789999999999999999999999999999999885
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-43 Score=308.76 Aligned_cols=284 Identities=14% Similarity=0.204 Sum_probs=253.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+..+ +++++.||.|++||+.+++.+..+.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~ 113 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY----CVTGSADYSIKLWDVSNGQCVATWK 113 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTTEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCE----EEEEeCCCeEEEEECCCCcEEEEee
Confidence 679999999999999999999999999999999999999999999996543 4458999999999999999999988
Q ss_pred CCCCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCc-----------eeEEccCCCC--CeEEEEEcCCCCEEEEE
Q 035621 82 VPEPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGD-----------ILRSFSAHDK--PVSCLKISPDGSLLISG 143 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~ 143 (387)
+...+.+++|+|+++++++++.+ +.|.+||+.... ....+..|.. .+.+++|+|++++|+++
T Consensus 114 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 114 SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 99999999999999999999998 999999997653 3344455665 89999999999999999
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCC-ccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 035621 144 GDDGVIATVPIFQLVDEHTDDKNPD-DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP 222 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 222 (387)
+.||.|++||+ .. ...+..+..|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+.+.
T Consensus 194 ~~dg~i~i~d~------------~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 259 (369)
T 3zwl_B 194 HKDGKISKYDV------------SNNYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETD 259 (369)
T ss_dssp ETTSEEEEEET------------TTTTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred cCCCEEEEEEC------------CCCcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCC
Confidence 99999999999 33 56778888999999999999875 89999999999999999999999999999
Q ss_pred CceeEEEeCCCCCeEEEEccCC--------------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621 223 CAIMGLALDPTETDFFAAGSDG--------------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL 288 (387)
Q Consensus 223 ~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 288 (387)
..+.+++|+|+++++++++.++ .+++||.... .....+.+|...|++++|+|++++|
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEE
Confidence 9999999999999999999988 7899998763 2233345799999999999999999
Q ss_pred EEEeCCCcEEEEECCCccEEEEee
Q 035621 289 VSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
++++.||.|++|+++++.....+.
T Consensus 331 ~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp EEEETTSEEEEEEECHHHHTCCCH
T ss_pred EEEcCCCeEEEEECccccchhHHH
Confidence 999999999999999887665554
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-42 Score=299.00 Aligned_cols=295 Identities=17% Similarity=0.202 Sum_probs=255.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI- 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~- 80 (387)
++|+|||++++++..++.+.+|+...........+|..+|.+++|+|++.+.+. ++ ||.|++||+.+++....+
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT----GG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEE----EC-BSEEEEEETTSTTCCSCSE
T ss_pred EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEE----cC-CCeEEEEECCCCCceeeee
Confidence 579999999999988888878776655555555579999999999996655443 66 999999999877644333
Q ss_pred -----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 81 -----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 81 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
.+...+.+++|+|++++|++++.||.|++||+++++ ....+..|...|.+++|+|+++++++++.||.|++||
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 467889999999999999999999999999999887 5667788999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 233 (387)
+ ........+..|...+.+++|+|++ ++|++++.|+.|++||+++++.+..+.+...+.+++|+|+
T Consensus 170 ~------------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 170 L------------HNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235 (337)
T ss_dssp T------------TTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred C------------CCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence 9 5566778888999999999999975 8999999999999999999999999999999999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
++++++++.++.|++||+.... .. ....|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~---------~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~- 304 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPD---------KY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK- 304 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSC---------EE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred CCEEEEEcCCCcEEEEECCCCC---------eE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-
Confidence 9999999999999999998732 11 234789999999999999999999999999999999999886554
Q ss_pred ccCCCceeEEEEec
Q 035621 314 ELAGSISEMVIATG 327 (387)
Q Consensus 314 ~~~~~v~~~~~~~~ 327 (387)
+...++++.|++.
T Consensus 305 -~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 305 -ESSSVLSCDISVD 317 (337)
T ss_dssp -CSSCEEEEEECTT
T ss_pred -CCCcEEEEEECCC
Confidence 3457888888764
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=299.77 Aligned_cols=275 Identities=15% Similarity=0.201 Sum_probs=239.1
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
+...++.+|..+|++++|+|++. .+++++.|++|++||..+++....+. +...|.+++|+|++.++++|+.|+.+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 55678899999999999999654 44559999999999998888776665 45689999999999999999999999
Q ss_pred EEEeCCCC------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 108 YAISVPKG------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 108 ~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
++|++... .....+..|...|.+++|+|++..|++++.|++|++||+ .....+..+.+|...
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~------------~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV------------ESGQLLQSFHGHGAD 198 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET------------TTCCEEEEEECCSSC
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC------------CCCeEEEEEcCCCCC
Confidence 99998643 345566789999999999999999999999999999999 566788899999999
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH 260 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 260 (387)
|.+++++|..++++|++|+.||+|++||+++++++..+. |...|.+++|+|++.+|++++.|+.|++||++....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~---- 274 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE---- 274 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----
Confidence 999999997667899999999999999999999998887 778999999999999999999999999999987321
Q ss_pred ccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 261 KGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 261 ~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
...+ ...+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|. +.|+++.|++..
T Consensus 275 ----~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~~spdg 338 (354)
T 2pbi_B 275 ----VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-NRVSTLRVSPDG 338 (354)
T ss_dssp ----EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTS
T ss_pred ----EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC-CcEEEEEECCCC
Confidence 1111 11234578999999999999999999999999999999999998774 589999987643
No 26
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-42 Score=307.62 Aligned_cols=290 Identities=20% Similarity=0.240 Sum_probs=239.5
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
+++++..+++++.||.|++||+.+++....+.. |...|.+++|+|++.+ +++++.||.|++||+.+++.+..+.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSF----LSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCE----EEEECCCCeEEEEECcCCeEEEEecC
Confidence 444456688888999999999999998877765 7889999999996544 4448899999999999998887775
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|...|.+++| +++++++++.||.|++||++ ....+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~------ 246 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA------ 246 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC------
Confidence 6788999999 45799999999999999998 56677888899999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe--CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS--MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFF 238 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 238 (387)
........+..|...|.+++|+|++ ..++++++ .|+.|++||+.+++.+..+.+...+.+++|+|++++++
T Consensus 247 ------~~~~~~~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 247 ------RSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp ------TCSSEEEEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEE
T ss_pred ------CCCCccEEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEE
Confidence 4566777888999999999999975 46777765 79999999999999999999999999999999999999
Q ss_pred EE--ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621 239 AA--GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316 (387)
Q Consensus 239 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 316 (387)
++ +.||.|++|++..... .....+.+|...|.+++|+|++++|++++.||.|++|++.+++.+........
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 392 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITK 392 (401)
T ss_dssp EEECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------------
T ss_pred EEeecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccC
Confidence 94 4899999999987321 11222357999999999999999999999999999999999998877654444
Q ss_pred CCc
Q 035621 317 GSI 319 (387)
Q Consensus 317 ~~v 319 (387)
...
T Consensus 393 ~~~ 395 (401)
T 4aez_A 393 TPS 395 (401)
T ss_dssp ---
T ss_pred CCc
Confidence 333
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-41 Score=316.09 Aligned_cols=291 Identities=23% Similarity=0.354 Sum_probs=253.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++++.|+.|++||. +++.+..+.+|..+|.+++|+|++.. +++++.|+.+++|+.. ++....+.
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~----l~~~~~d~~i~~w~~~-~~~~~~~~ 300 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQT----IASASDDKTVKLWNRN-GQLLQTLT 300 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETT-SCEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCE----EEEEeCCCEEEEEeCC-CcEEEEEe
Confidence 579999999999999999999995 67888899999999999999996544 4458899999999974 44444444
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
|...|.+++|+|+++++++++.|+.|++||+. ++.+..+.+|...+.+++|+|+++++++++.|+.|++||.
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~------ 373 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR------ 373 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET------
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC------
Confidence 77899999999999999999999999999975 4556778889999999999999999999999999999997
Q ss_pred CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA 239 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 239 (387)
....+..+..|...|.+++|+|++ ++|++++.|+.|++||. +++.+..+. +...|.+++|+|++++|++
T Consensus 374 -------~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 374 -------NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443 (577)
T ss_dssp -------TCCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -------CCCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 445677888999999999999885 89999999999999995 566666666 7789999999999999999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI 319 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 319 (387)
++.|+.|++||... .....+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|. ..|
T Consensus 444 ~~~d~~v~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~-~~v 511 (577)
T 2ymu_A 444 ASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSV 511 (577)
T ss_dssp EETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS-SCE
T ss_pred EcCCCEEEEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC-CCE
Confidence 99999999999653 223334579999999999999999999999999999995 688899998874 589
Q ss_pred eeEEEEec
Q 035621 320 SEMVIATG 327 (387)
Q Consensus 320 ~~~~~~~~ 327 (387)
++++|++.
T Consensus 512 ~~l~~s~d 519 (577)
T 2ymu_A 512 RGVAFSPD 519 (577)
T ss_dssp EEEEECTT
T ss_pred EEEEEcCC
Confidence 99988763
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-42 Score=304.61 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=244.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++....
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR----IVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE----EEEEETTSCEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE----EEEEcCCCeEEEEECCCCeeeee
Confidence 5799999999999999999999999887 88899999999999999996544 44488999999999988864333
Q ss_pred ---cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce----eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 80 ---IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI----LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 80 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
..+...|.+++|+|++++|++++.|+.|++||++.++. ......|...|.+++|+|++++|++++.||.|++|
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 169 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 169 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence 44778999999999999999999999999999988763 33346789999999999999999999999999999
Q ss_pred eCCcccccCC------CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 035621 153 PIFQLVDEHT------DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAI 225 (387)
Q Consensus 153 d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v 225 (387)
|++....... .........+..+..|...|.+++|+|++ ++|++++.|+.|++||+++++++..+. +...+
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 247 (372)
T 1k8k_C 170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPL 247 (372)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCe
Confidence 9742111000 00013456777888999999999999875 899999999999999999999998887 56689
Q ss_pred eEEEeCCCCCeEEEEccCCcEEEEeccc--ccccc------------------------cccccee------Eeeccccc
Q 035621 226 MGLALDPTETDFFAAGSDGLIYKGLLKY--QSRQQ------------------------MHKGQEL------VTLANRHD 273 (387)
Q Consensus 226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~------------------------~~~~~~~------~~~~~~~~ 273 (387)
.+++|+|++.+++++ .|+.|++|++.. +.... ...+... ..+..+|.
T Consensus 248 ~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 326 (372)
T 1k8k_C 248 LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK 326 (372)
T ss_dssp EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS
T ss_pred EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccccc
Confidence 999999999988887 899999999987 32100 0001111 22334899
Q ss_pred ccEEEEEEe-cCC---CEEEEEeCCCcEEEEECCCccE
Q 035621 274 GVVVSVMMM-NEG---KNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 274 ~~v~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
..|++++|. ++| .+|++|+.||.|++||+.+++.
T Consensus 327 ~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 327 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred CCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 999999976 666 8999999999999999987654
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-42 Score=305.61 Aligned_cols=302 Identities=14% Similarity=0.124 Sum_probs=245.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI- 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~- 80 (387)
++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++.. +++++.|+.|++||+.+++....+
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR----FILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE----EEEEETTSCEEEECTTSCEEEEETT
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE----EEEEECCCCEEEEeCCCcceeeecc
Confidence 579999999999999999999999988877777666 33444567775543 445899999999999998888776
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~------ 210 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC------ 210 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET------
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC------
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEeeec---cCCCeEEEEEeeC-------------------CCCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621 161 HTDDKNPDDLMLQKFVA---HNDSVTAITCCIG-------------------SFNSIIISCSMDCTCKFWRLLNGTHLST 218 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~-------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 218 (387)
.....+..+.. |...+.++++.+. +++++|++++.||.|++||+++++.+..
T Consensus 211 ------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 211 ------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp ------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ------CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 34455555553 4456666665432 2358999999999999999999998887
Q ss_pred Ee--cCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 219 VT--FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 219 ~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
+. +...+.+++|+|++. +|++++.||.|++||++.... .+..+...|...|.++.+ +++++|++++.||
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-------PVGEFLINEGTPINNVYF-AAGALFVSSGFDT 356 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-------chhhhhccCCCCceEEEe-CCCCEEEEecCCc
Confidence 76 567899999999998 999999999999999987421 122333347778888855 5788999999999
Q ss_pred cEEEEECCCccE---------EEEeecccCCCceeEEEEecCC
Q 035621 296 SVYIWEIEKRQV---------VMVLKNELAGSISEMVIATGIG 329 (387)
Q Consensus 296 ~i~iwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~ 329 (387)
.|++|++...+. ...+.. +.+.|.+++|++...
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFETPTFLVS-NDDAVSQFCYVSDDE 398 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTSCEEECC-SSCCCCEEEEECCSS
T ss_pred cEEEEeccCCCCCccceeccCccEEcc-CCcceEEEEEccCCC
Confidence 999999887422 112222 345788888887654
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-42 Score=300.05 Aligned_cols=283 Identities=16% Similarity=0.236 Sum_probs=212.1
Q ss_pred EEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCC------CCeEEEEEccCCCccccc----
Q 035621 11 ILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG------SGSVHLYNLWSSTPLHNI---- 80 (387)
Q Consensus 11 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------d~~v~vw~~~~~~~~~~~---- 80 (387)
++.++.+.....|++.... ...|...|++++|+|++.++++ ++. |+.+++|+..++.+...+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las----~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~ 90 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLA----ASSLSSRTWGGSIWVFKDPEGAPNESLCTAG 90 (357)
T ss_dssp -------------------------CCCSEEEEEEECSSSCEEEE----EECSSSSSCCEEEEEESSCC---CGGGCSEE
T ss_pred EEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEE----EcCCCCccccCeEEEEECCCCCcceeEeccc
Confidence 3444456778889875433 3569999999999997765554 665 788999998887654433
Q ss_pred -CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 81 -PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR----SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 81 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
.+...|.+++|+|++. +++++.||.|++||+.+++... ...+|...|++++|+|++++|++++.|+.|++||+
T Consensus 91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~- 168 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL- 168 (357)
T ss_dssp EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET-
T ss_pred CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC-
Confidence 3678899999999986 5567789999999998876543 23479999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP 232 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~ 232 (387)
.....+..+.+|...|.+++|++++ ..++++++.|++|++||++++++...+. +...+.+++|+|
T Consensus 169 -----------~~~~~~~~~~~h~~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 169 -----------SQKAVLKSYNAHSSEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp -----------TTTEEEEEECCCSSCEEEEEECTTC-SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred -----------CCCcEEEEEcCCCCCEEEEEEccCC-CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 5677888899999999999999885 4689999999999999999988776654 456799999999
Q ss_pred CC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEE
Q 035621 233 TE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 233 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (387)
++ .+|++|+.|+.|++||++.... ...+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~---------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDS---------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGG---------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceEEEeecccceeEEECCCCcE---------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 85 6788899999999999987322 22345799999999999987 5899999999999999999998876
Q ss_pred eecccCCCceeEEEEe
Q 035621 311 LKNELAGSISEMVIAT 326 (387)
Q Consensus 311 ~~~~~~~~v~~~~~~~ 326 (387)
+ +| .+.|++++|++
T Consensus 308 ~-~H-~~~V~~vafsP 321 (357)
T 4g56_B 308 L-SH-RDFVTGVAWSP 321 (357)
T ss_dssp C-CC-SSCEEEEEECS
T ss_pred C-CC-CCCEEEEEEeC
Confidence 6 44 56899998875
No 31
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.4e-42 Score=299.33 Aligned_cols=280 Identities=11% Similarity=0.066 Sum_probs=221.8
Q ss_pred ccccCCCcEEEeeCCC-------CcEEEEeCCCCce----------eEeccCCCCCceeEEEcCccceee-----ecccc
Q 035621 2 LHHLPCNEVILTSSPE-------GPITAYNPSSGAI----------LAHFSGSRSPRRGLTFAGKPFIAA-----SHISP 59 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~ 59 (387)
++|+||+++|++|+.+ +.|++|++..+.. ...+.+|...|.+++++++..+.+ ..+++
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s 99 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQ 99 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEE
Confidence 6899999999998653 3599999875432 134678888999999887644432 24667
Q ss_pred CCCCCeEEEEEccCCCcccc-------c---CCCCCeeeEEeccCCCEEEEe--cCCCcEEEEeCCCCceeEEccCCCCC
Q 035621 60 TTGSGSVHLYNLWSSTPLHN-------I---PVPEPVAPLATTADGSYLFTG--GLSGNVYAISVPKGDILRSFSAHDKP 127 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~-------~---~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~ 127 (387)
++.|+.+++|++........ . .+...+.+++|+|||++++++ +.|++|++||+++++++..+. |...
T Consensus 100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~ 178 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGE 178 (365)
T ss_dssp TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSC
T ss_pred ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCc
Confidence 88899999999876543211 1 123458899999999998754 478999999999999988886 7788
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc--eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--
Q 035621 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM--LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-- 203 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-- 203 (387)
|.+++|+|+++++++++.++ +++|+.. .... ......|...|.+++|+|++ .++++++.|+
T Consensus 179 V~~v~fspdg~~l~s~s~~~-~~~~~~~------------~~~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~ 243 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGSS-LEVISTV------------TGSCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGK 243 (365)
T ss_dssp CCEEEECTTSSEEEEECSSC-EEEEETT------------TCCEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSC
T ss_pred eEEEEEccCCceEEecccee-EEEEEec------------cCcceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcc
Confidence 99999999999999998665 5555552 2222 23445688899999999985 8999998887
Q ss_pred --cEEEEeCCCCcEE----EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 204 --TCKFWRLLNGTHL----STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 204 --~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
.+++|++...... ..+. +...|++++|+|+|++|++|+.|+.|++||+.+ +..+..++.+|...|
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--------~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--------LSMSKIFKQAHSFAI 315 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--------TEEEEEETTSSSSCE
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--------CcEEEEecCcccCCE
Confidence 6889998776542 2233 667899999999999999999999999999987 445555667899999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
++++|+|||++|++|+.|++|+|||+..+
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999643
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-42 Score=306.21 Aligned_cols=297 Identities=15% Similarity=0.218 Sum_probs=252.4
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeC----CCCc------eeEeccC----------CCCCceeEEEcCccceeeeccccC
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNP----SSGA------ILAHFSG----------SRSPRRGLTFAGKPFIAASHISPT 60 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~ 60 (387)
++|+|+++ +||+|+.||.|++||+ .+++ ....+.. |...|.+++|+|++.+ ++++
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~ 126 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS----IVTG 126 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE----EEEE
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE----EEEE
Confidence 57999999 9999999999999999 8887 4555544 6779999999996544 4448
Q ss_pred CCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC------------
Q 035621 61 TGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP------------ 127 (387)
Q Consensus 61 ~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------ 127 (387)
+.||.|++|| .+++.+..+. |...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD 205 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCC
Confidence 8999999999 5666666665 7789999999999999999999999999999999999888877776
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621 128 ---VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT 204 (387)
Q Consensus 128 ---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~ 204 (387)
+.+++|+|++ .+++++.||.|++||+ .....+..+..|...|.+++|+|++ ++|++++.|+.
T Consensus 206 ~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~------------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~ 270 (425)
T 1r5m_A 206 GSLGVDVEWVDDD-KFVIPGPKGAIFVYQI------------TEKTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGT 270 (425)
T ss_dssp CCCBSCCEEEETT-EEEEECGGGCEEEEET------------TCSSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSC
T ss_pred cceeeEEEEcCCC-EEEEEcCCCeEEEEEc------------CCCceeeeeccCCCceEEEEECCCC--CEEEEEcCCCE
Confidence 9999999875 5889999999999999 4556677788999999999999985 89999999999
Q ss_pred EEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621 205 CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 283 (387)
|++||+++++.+..+. +...+.+++|+|++ ++++++.|+.|++||+... ........|...|.+++|+|
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECT
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcC
Confidence 9999999998888887 77899999999999 9999999999999999873 23333447889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCcc--------------------EEEEeecccCC-CceeEEEEecC
Q 035621 284 EGKNLVSAAEDGSVYIWEIEKRQ--------------------VVMVLKNELAG-SISEMVIATGI 328 (387)
Q Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~-~v~~~~~~~~~ 328 (387)
++++|++++.||.|++||+.+++ ++..+..|..+ .|+++.|++..
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 99999999999999999999998 88888887655 89999887644
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-42 Score=305.53 Aligned_cols=278 Identities=14% Similarity=0.179 Sum_probs=236.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc------eeEeccCCCCCceeEEEcCc----cceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA------ILAHFSGSRSPRRGLTFAGK----PFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
++|+| ++|++|+.||.|++||+.+++ .+..+.+|..+|.+++|+|+ +. ....+++++.|+.|++|++
T Consensus 22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~-~~~~l~s~~~dg~i~iw~~ 98 (397)
T 1sq9_A 22 VSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF-ELCLVATTSFSGDLLFYRI 98 (397)
T ss_dssp EEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE-EEEEEEEEETTSCEEEEEE
T ss_pred EEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCc-cccEEEEEcCCCCEEEEEc
Confidence 56888 799999999999999999888 78888999999999999995 30 0034455889999999999
Q ss_pred cCCCc-----ccccC-C-----CCCeeeEEec----cCCCE-EEEecCCCcEEEEeCCC------CceeE-----Ec---
Q 035621 72 WSSTP-----LHNIP-V-----PEPVAPLATT----ADGSY-LFTGGLSGNVYAISVPK------GDILR-----SF--- 121 (387)
Q Consensus 72 ~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~--- 121 (387)
.+++. ...+. + ...|.+++|+ |++++ |++++.||.|++||+++ ++.+. .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 98886 66555 4 3889999999 99999 99999999999999988 66655 66
Q ss_pred ----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec---c---CCCeEEEEEeeCC
Q 035621 122 ----SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---H---NDSVTAITCCIGS 191 (387)
Q Consensus 122 ----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~ 191 (387)
..|...|.+++|+|++ ++++++.||.|++||+ .....+..+.. | ...|.+++|+|++
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL------------STLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET------------TTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC------------CCCceeEEEeccccccccCCccceEEECCCC
Confidence 4588999999999999 9999999999999999 45667788888 8 9999999999985
Q ss_pred CCceEEEEeCC---CcEEEEeCCCCcEEEEEe--------------cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 192 FNSIIISCSMD---CTCKFWRLLNGTHLSTVT--------------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 192 ~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
.+|++++.| +.|++||+++++.+..+. +...|.+++|+|++++|++++.||.|++||+...
T Consensus 246 --~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 246 --SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp --TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred --CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 899999999 999999999999988886 5788999999999999999999999999999874
Q ss_pred ccccccccceeEeecc------cc---------------cccEEEEEEecCC----------CEEEEEeCCCcEEEEECC
Q 035621 255 SRQQMHKGQELVTLAN------RH---------------DGVVVSVMMMNEG----------KNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 255 ~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i~iwd~~ 303 (387)
... . .+. .| ...|++++|+|++ ++|++++.||.|++|++.
T Consensus 324 ~~~--------~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 324 ERI--------T-TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEE--------E-EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cee--------E-EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 322 1 122 44 8999999999998 799999999999999998
Q ss_pred Ccc
Q 035621 304 KRQ 306 (387)
Q Consensus 304 ~~~ 306 (387)
+|+
T Consensus 395 ~g~ 397 (397)
T 1sq9_A 395 GGK 397 (397)
T ss_dssp C--
T ss_pred CCC
Confidence 874
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-41 Score=290.66 Aligned_cols=283 Identities=13% Similarity=0.129 Sum_probs=220.1
Q ss_pred CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--ccccc--C-CCCCeeeEEeccCCCEEEEe
Q 035621 27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNI--P-VPEPVAPLATTADGSYLFTG 101 (387)
Q Consensus 27 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~~~ 101 (387)
+.+.+..+.+|..+|.+++|+|+ .+++++.|+.|++||+..+. ....+ . |...|.+++|+|++++|++|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred ccccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 45678889999999999999986 44558999999999998753 33333 2 77899999999999999999
Q ss_pred cCCCcEEEEeCCC-------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 102 GLSGNVYAISVPK-------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 102 ~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+.|+.|++||++. .+++..+.+|...|.+++|+|++++|++++.|++|++||+... ......+..
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~--------~~~~~~~~~ 148 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES--------GEEYECISV 148 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT--------CCCCEEEEE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC--------CCCeEEEEE
Confidence 9999999999853 3566778899999999999999999999999999999998321 012345677
Q ss_pred eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceeEEEeCCC--CCeEEEEccCCcEEEE
Q 035621 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVT-FPCAIMGLALDPT--ETDFFAAGSDGLIYKG 249 (387)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 249 (387)
+.+|...|.+++|+|++ .+|++++.|++|++||..++ +++..+. |...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 149 ~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp ECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred eccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 88999999999999985 89999999999999999876 5666665 7789999999999 6789999999999999
Q ss_pred eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc--EEEEe-ecccCCCceeEEEEe
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ--VVMVL-KNELAGSISEMVIAT 326 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~~~~~~v~~~~~~~ 326 (387)
|+................+...|...|.+++|++++ +|++++.||.|++||..+++ .+... ..|....|+++.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 997642211100011222223489999999999765 89999999999999998874 33333 344333788777765
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=297.37 Aligned_cols=275 Identities=17% Similarity=0.159 Sum_probs=215.4
Q ss_pred EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-------C-----CcccccCCCCCee
Q 035621 20 ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-------S-----TPLHNIPVPEPVA 87 (387)
Q Consensus 20 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-------~-----~~~~~~~~~~~v~ 87 (387)
.+.|++....+ ..|...|.+++|+|++.++++ ++ |+++++||... . .....+.+...|.
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~----~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 86 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLG----AS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA 86 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEE----EE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEE----Ee-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEE
Confidence 45677654332 346777999999998766553 44 66777776321 1 1111223456899
Q ss_pred eEEeccCCCEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
+++|+|++ .|++|+.||.|++||+.+++.+.. ..+|...|++++|+|++++|++|+.|+.|++||+
T Consensus 87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~--------- 156 (344)
T 4gqb_B 87 DLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL--------- 156 (344)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET---------
T ss_pred EEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC---------
Confidence 99999985 688999999999999998876543 3489999999999999999999999999999999
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCC-CeEEE
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTE-TDFFA 239 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~ 239 (387)
.....+..+.+|...|.+++|++++ ..+|++++.|++|++||++++++...+. +...+.+++|+|++ +++++
T Consensus 157 ---~~~~~~~~~~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 157 ---AQQVVLSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp ---TTTEEEEEECCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred ---CCCcEEEEEcCcCCceEEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 5677889999999999999999885 4688999999999999999999888775 34578999999964 67888
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 318 (387)
|+.||.|++||+++.. . ...+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++++. +.+| .+.
T Consensus 233 g~~dg~v~~wd~~~~~--------~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H-~~~ 301 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTS--------C-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH-RDF 301 (344)
T ss_dssp EETTSEEEEEESCC----------C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC-SSC
T ss_pred eccCCcEEEEECCCCc--------E-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC-CCC
Confidence 9999999999998732 2 22345899999999999998 589999999999999999998764 5565 458
Q ss_pred ceeEEEEecC
Q 035621 319 ISEMVIATGI 328 (387)
Q Consensus 319 v~~~~~~~~~ 328 (387)
|++++|++..
T Consensus 302 V~~v~~sp~~ 311 (344)
T 4gqb_B 302 VRDATWSPLN 311 (344)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEeCCC
Confidence 9999887543
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.3e-41 Score=291.05 Aligned_cols=272 Identities=15% Similarity=0.242 Sum_probs=233.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec---c--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF---S--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++|+|++++|++++ ||.|++||+.+++....+ . +|...|.+++|+|+... +++++.|+.|++||+.+++.
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT----LIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE----EEEEESSSEEEEEECCCC--
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE----EEEEcCCCcEEEEECCCCCc
Confidence 57999999999999 999999999877543332 2 78999999999996543 44488999999999988863
Q ss_pred --ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 77 --LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 77 --~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
...+. +...+.+++|+|+++++++++.||.|++||+++++.+..+..|...+.+++|+|+++++++++.||.|++||
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 33333 667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 233 (387)
+ .....+..+ .+...+.+++|+|++ +++++++.|+.|++||+++++......+...+.+++|+|+
T Consensus 212 ~------------~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 212 L------------REGRQLQQH-DFTSQIFSLGYCPTG--EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276 (337)
T ss_dssp T------------TTTEEEEEE-ECSSCEEEEEECTTS--SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred C------------CCCceEeee-cCCCceEEEEECCCC--CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCC
Confidence 9 344444444 578899999999885 8999999999999999999887766568899999999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+++|++++.||.|++|++.... .... ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~--------~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGA--------SIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCC--------EEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEecCCCcEEEEECCCCe--------EEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999998732 2221 2588899999999999999999999999999963
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-42 Score=307.84 Aligned_cols=282 Identities=13% Similarity=0.157 Sum_probs=237.1
Q ss_pred ccccCCCc-EEEee----------CCCCcEEEEeCCCCc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEE
Q 035621 2 LHHLPCNE-VILTS----------SPEGPITAYNPSSGA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH 67 (387)
Q Consensus 2 l~~s~~~~-~l~~~----------~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~ 67 (387)
++|+|+++ +|++| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|++.+ +++++.||.|+
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~----l~~~~~dg~v~ 92 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI----IAGALDNGSLE 92 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC----EEEEESSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe----EEEEccCCeEE
Confidence 68999987 99999 899999999998876 34444 58889999999996544 44588999999
Q ss_pred EEEccC----CCcccccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc------eeEE---ccCCCCCeEEEE
Q 035621 68 LYNLWS----STPLHNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD------ILRS---FSAHDKPVSCLK 132 (387)
Q Consensus 68 vw~~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~~~~~~~v~~~~ 132 (387)
+||+.+ .+....+. |...|.+++|+|+ +++|++++.||.|++||+.+++ .... +..|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 33555554 7789999999998 8999999999999999998876 3322 367899999999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCCCceEEEEeCCC--
Q 035621 133 ISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSFNSIIISCSMDC-- 203 (387)
Q Consensus 133 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~d~-- 203 (387)
|+|+ +.++++++.||.|++||+ .....+..+..+ ...+.+++|+|++ ..++++++.|+
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDL------------KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDND 239 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEET------------TTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSS
T ss_pred eCCCCCcEEEEEcCCCCEEEEEC------------CCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCC
Confidence 9998 789999999999999999 455566666665 7899999999984 46899999998
Q ss_pred -cEEEEeCCCC-cEEEEEe--cCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621 204 -TCKFWRLLNG-THLSTVT--FPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 204 -~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (387)
.|++||++++ .++..+. +...|.+++|+| ++++|++++.||.|++||+.+. .....+..|...|.+
T Consensus 240 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~ 310 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFK 310 (416)
T ss_dssp CCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCC
T ss_pred ceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEE
Confidence 9999999986 5666665 778999999999 8999999999999999999873 223334578999999
Q ss_pred EEEecCC-CEEEEEeCCCcEEEEECCCccEEEE
Q 035621 279 VMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 279 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (387)
++|+|++ .+|++++.||.|++||+.+++....
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 9999999 8999999999999999998775443
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-42 Score=302.93 Aligned_cols=290 Identities=19% Similarity=0.266 Sum_probs=237.2
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCC
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGS 96 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 96 (387)
..+..|+..+.....++.+|.++|++++|+|++. .+++++.|++|++||+.+++....+. |...|.+++|+|+++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC
Confidence 4456788888888999999999999999999654 45559999999999999988877776 667899999999999
Q ss_pred EEEEecCCCcEEEEeCCCCc-------eeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621 97 YLFTGGLSGNVYAISVPKGD-------ILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 97 ~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
+|++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+ ..
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~------------~~ 189 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV------------TT 189 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT------------TT
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc------------CC
Confidence 99999999999999986532 34567799999999999996 457999999999999999 34
Q ss_pred ccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621 169 DLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 169 ~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 241 (387)
...+..+ .+|...|.++++.+.. +++|++|+.|++|++||++ .++.+..+. |...|.+++|+|++++|++++
T Consensus 190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 190 GQRISIFGSEFPSGHTADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp CCEEEEECCCSSSSCCSCEEEEEECSSS-CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred CcEEEEeecccCCCCccCeEEEEeecCC-CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence 4445444 5789999999997742 5899999999999999998 456666666 788999999999999999999
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee---cccCCC
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK---NELAGS 318 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~ 318 (387)
.||.|++||++++........... ....+...|++++|+|+|++|++|+.||.|++||+.+++.+..+. ..+.+.
T Consensus 269 ~D~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 269 DDGTCRLFDMRTGHQLQVYNREPD--RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCS--SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred CCCeEEEEECCCCcEEEEeccccc--ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 999999999987543221111000 001233458999999999999999999999999999999888773 234568
Q ss_pred ceeEEEEe
Q 035621 319 ISEMVIAT 326 (387)
Q Consensus 319 v~~~~~~~ 326 (387)
|+++.|++
T Consensus 347 v~~l~~s~ 354 (380)
T 3iz6_a 347 ISCLGLSS 354 (380)
T ss_dssp CCEEEECS
T ss_pred eEEEEECC
Confidence 99988875
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-40 Score=286.22 Aligned_cols=271 Identities=20% Similarity=0.257 Sum_probs=226.6
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----cccccC-CCCCeeeEEeccCCCEEEEec
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----PLHNIP-VPEPVAPLATTADGSYLFTGG 102 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 102 (387)
.+..++.+|.++|.+++|+|+. ...+++++.|++|++|++.... ++..+. |...|.+++|+|++++|++|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~---~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQ---PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCC---ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4566789999999999999842 1234458999999999986532 233443 778999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
.|++|++||+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+ ....+..+.+|...|
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~-------------~~~~~~~~~~h~~~v 151 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-------------KGQCLATLLGHNDWV 151 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET-------------TSCEEEEECCCSSCE
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCeEEEEeccCCcE
Confidence 9999999999999999999999999999999999999999999999999998 344677888999999
Q ss_pred EEEEEeeCC----CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 183 TAITCCIGS----FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 183 ~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
.++.+.|.. ++..+++++.|+.|++||+++.+....+. |...|.+++|+|++++|++++.||.|++||+....
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-- 229 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-- 229 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 999998863 23589999999999999999998888776 78899999999999999999999999999998732
Q ss_pred cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc-------CCCceeEEEEe
Q 035621 258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL-------AGSISEMVIAT 326 (387)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~ 326 (387)
.+..+ .+...|.+++|+|++.+|++++.+ .+++|++..+..+..+..+. ...+.+++|++
T Consensus 230 ------~~~~~--~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 230 ------AMYTL--SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp ------EEEEE--ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred ------EEEEe--cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence 22222 245689999999999999988765 59999999988888776432 23455666554
No 40
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6e-41 Score=298.96 Aligned_cols=288 Identities=20% Similarity=0.307 Sum_probs=238.6
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+|+||++ ++||+|. |++|+|||..+++....+ .+|...|++++|+|++.+ +++|+.||.|++||+++++.+.
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~----lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY----LAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTTTEEEE
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE----EEEEECCCeEEEEEcCCCcEEE
Confidence 4789976 5788875 899999999999887765 467788999999996554 4459999999999999998888
Q ss_pred ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+. |...+.++++ ++.+|++|+.|+.+++||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+...
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 776 5667877766 5679999999999999998764 45677889999999999999999999999999999999843
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE--EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS--CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
.. .....+.....|...|.+++|+|.. ..++++ |+.|++|++||+.++++...+.....+.++.|+|++
T Consensus 262 ~~--------~~~~~~~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~ 332 (420)
T 4gga_A 262 GE--------GGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 332 (420)
T ss_dssp CS--------SCSCCSEEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred cc--------ccceeeeeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence 21 1223456778899999999999986 456655 457999999999999999999999999999999999
Q ss_pred CeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 235 TDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 235 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+.+++++ .|+.|++||+.+. .. ...+.+|.+.|++++|+|+|++|+||+.|++|+|||+.+..+....+
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~--------~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTM--------AK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTC--------CE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred CeEEEEEecCCCEEEEEECCCC--------cE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 9998865 6899999999873 22 33446899999999999999999999999999999998877666555
Q ss_pred cc
Q 035621 313 NE 314 (387)
Q Consensus 313 ~~ 314 (387)
.+
T Consensus 404 ~~ 405 (420)
T 4gga_A 404 RE 405 (420)
T ss_dssp --
T ss_pred hc
Confidence 44
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=288.54 Aligned_cols=286 Identities=13% Similarity=0.171 Sum_probs=228.1
Q ss_pred CceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----ccCCCCCeeeEEeccCCCEEEEec
Q 035621 28 GAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----NIPVPEPVAPLATTADGSYLFTGG 102 (387)
Q Consensus 28 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~ 102 (387)
.+.+.++++|.. .|.+++|+|++.+ +++++.|+.|++||+.++.... ...|...|.+++|+|++++|++|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~----las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTL----LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSC----EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCE----EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 456778889988 8999999996544 4559999999999998875332 124778999999999999999999
Q ss_pred CCCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621 103 LSGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180 (387)
Q Consensus 103 ~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (387)
.|+.+++||+..+ +++..+.+|...|.+++|+|++++|++++.|+.|++||+... .....+..+..|..
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE---------DEYECVSVLNSHTQ 151 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT---------SCEEEEEEECCCCS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC---------CCeEEEEEecCcCC
Confidence 9999999999876 456788899999999999999999999999999999998431 12235667789999
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
.|.+++|+|++ .+|++++.|++|++||+++++. ...+. |...|.+++|+|++++|++++.|+.|++|+.......
T Consensus 152 ~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 152 DVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp CEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999985 8999999999999999988753 34454 6789999999999999999999999999997543221
Q ss_pred ccc-------ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc--------EEEEeecccCCCceeE
Q 035621 258 QMH-------KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ--------VVMVLKNELAGSISEM 322 (387)
Q Consensus 258 ~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~ 322 (387)
... ....+......|...|.+++|+|++..|++++.|+.|++|+...+. ........+...|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 110 0111222333488999999999999999999999999999987653 1112222235688888
Q ss_pred EEEecC
Q 035621 323 VIATGI 328 (387)
Q Consensus 323 ~~~~~~ 328 (387)
+|++..
T Consensus 310 ~~~p~~ 315 (345)
T 3fm0_A 310 AWNPKE 315 (345)
T ss_dssp EECSSS
T ss_pred EEeCCC
Confidence 887643
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.6e-41 Score=302.43 Aligned_cols=289 Identities=18% Similarity=0.219 Sum_probs=252.6
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
++.+++++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+++. .+++++.||+|++||+.+++.+..+.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 456678899999999999999999999999999999999999999865 34458999999999999998888877
Q ss_pred CCCCeeeEEec--cCCCEEEEecCCCcEEEEeCCCCce-----------------------eEEccCCCCCeEEEEEcCC
Q 035621 82 VPEPVAPLATT--ADGSYLFTGGLSGNVYAISVPKGDI-----------------------LRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 82 ~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~ 136 (387)
|...|.+++|+ ++++++++|+.||.|++||+++++. +..+.+|...+.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 77899999998 5778999999999999999987652 45667888888887 567
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
++++++++.||.|++||+ .....+..+.+|...|.+++|+|++ +++++++.||.|++||+++++++
T Consensus 280 ~~~l~~~~~d~~i~vwd~------------~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDV------------AQMKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp TTEEEEEETTSCEEEEET------------TTTEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCeEEEEEC------------CCCcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEE
Confidence 899999999999999999 5667788889999999999999975 89999999999999999999999
Q ss_pred EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 217 STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 217 ~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
..+. |...|.+++|+ ++++++++.||.|++||+.... ..... .|...+..++|+|++++|++|+ ||
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--------RKFSY--HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------EEEEE--ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--------eeeee--cCCCCccEEEEEeCCCEEEEec-CC
Confidence 9987 77889999997 5899999999999999998732 22222 4667788899999999999998 89
Q ss_pred cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 296 SVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
.|++||+.+++++..+...+.+.|.++.|.
T Consensus 413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred eEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 999999999999987555557789999885
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.1e-41 Score=286.03 Aligned_cols=272 Identities=19% Similarity=0.290 Sum_probs=234.3
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
.....++.+|..+|++++|+|++.+ +++++.||.|++|++.+++....+. |...|.+++|+|++++|++++.|+.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~----l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCE----EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 4556778999999999999996544 4458999999999999988877766 6788999999999999999999999
Q ss_pred EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621 107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (387)
|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+ .....+..+..|..+|.+++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~------------~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------------KTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET------------TTCCEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------CCCEEEEEecCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999 55667788889999999999
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE 264 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 264 (387)
|+|++ .+|++++.|+.|++||+++++.+..+. +...+..++|+|+++++++++.|+.|++||+.... .
T Consensus 157 ~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~ 226 (312)
T 4ery_A 157 FNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--------C 226 (312)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------E
T ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------E
Confidence 99875 899999999999999999999888775 45679999999999999999999999999998732 2
Q ss_pred eEeecccccccEE--EEEE-ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 265 LVTLANRHDGVVV--SVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 265 ~~~~~~~~~~~v~--~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
...+.+|...+. ...+ .+++.+|++|+.||.|++||+.+++++..+.+|. ..|.++++.+.
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~ 290 (312)
T 4ery_A 227 -LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT-DVVISTACHPT 290 (312)
T ss_dssp -EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECSS
T ss_pred -EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC-CcEEEEeecCc
Confidence 222234544322 2234 4678899999999999999999999999999875 47888877653
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-42 Score=309.46 Aligned_cols=282 Identities=16% Similarity=0.156 Sum_probs=221.3
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
|+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.++|++++|+| ++. .+++++.||+|++||++++...
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~----~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN----QFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT----EEEEECSSSCEEEEETTSCEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC----EEEEEeCCCEEEEeeccCCcee
Confidence 68999 567999999999999999987754 445678999999999998 333 4455899999999999766443
Q ss_pred cccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621 78 HNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP 153 (387)
Q Consensus 78 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 153 (387)
.... +...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. ++++++.|+.|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 3222 23467899999999999999999999999985 456778889999999999999876 788999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC------Ccee
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP------CAIM 226 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~------~~v~ 226 (387)
++... .........+|...|.+++|+|++ .+|++++.|++|++||+.++.....+. +. ..+.
T Consensus 280 ~~~~~---------~~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 280 LRQVR---------GKASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp TTTCC---------SSSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred ccccc---------ccceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence 95421 112233446799999999999875 899999999999999999988776664 21 1344
Q ss_pred EEEeCCCCCeEEEEcc------------CCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEEEeC
Q 035621 227 GLALDPTETDFFAAGS------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAE 293 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~ 293 (387)
...|+|++..++++.. ++.|++||..+ +..+..+..+|...|.++ +|+|+|++|++|+
T Consensus 349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--------g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--------GKMMCQLYDPESSGISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS--------CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-
T ss_pred EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC--------CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-
Confidence 5677777777777642 35799999887 344455556788889887 6999999999876
Q ss_pred CCcEEEEECCCccEE
Q 035621 294 DGSVYIWEIEKRQVV 308 (387)
Q Consensus 294 dg~i~iwd~~~~~~~ 308 (387)
|+.|+||++++++..
T Consensus 420 d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 GYHILIWSQQEARTR 434 (435)
T ss_dssp SSEEEECCCC-----
T ss_pred CCcEEEEECCcCeee
Confidence 889999999998764
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-41 Score=319.42 Aligned_cols=284 Identities=16% Similarity=0.202 Sum_probs=232.9
Q ss_pred ccccCCC-cEEEeeCCCCcEEEEeCCCC-----ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCN-EVILTSSPEGPITAYNPSSG-----AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
++|+|++ ++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~----l~sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF----ALSGSWDGELRLWDLAAGV 463 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE----EEEEeCCCcEEEEECCCCc
Confidence 5688865 79999999999999998753 345678999999999999996554 4459999999999999998
Q ss_pred cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCC--CEEEEEeCCCcE
Q 035621 76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDG--SLLISGGDDGVI 149 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~dg~i 149 (387)
....+. |...|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++ ..+++++.|+.|
T Consensus 464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 543 (694)
T 3dm0_A 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence 777665 7789999999999999999999999999998655433322 4688999999999986 589999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLA 229 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~ 229 (387)
++||+ ........+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..+..+.+++
T Consensus 544 ~vwd~------------~~~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 544 KVWNL------------SNCKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609 (694)
T ss_dssp EEEET------------TTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred EEEEC------------CCCcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence 99999 4566778889999999999999985 899999999999999999999998888888999999
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeE----------eecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV----------TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
|+|++.++++++ ++.|++||+............... .....+...+++++|+|+|++|++|+.||.|++
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999988777665 566999999875433221110000 000112234789999999999999999999999
Q ss_pred EECCC
Q 035621 300 WEIEK 304 (387)
Q Consensus 300 wd~~~ 304 (387)
|++..
T Consensus 689 W~i~~ 693 (694)
T 3dm0_A 689 WGIGR 693 (694)
T ss_dssp EEC--
T ss_pred EeccC
Confidence 99853
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-42 Score=306.90 Aligned_cols=287 Identities=15% Similarity=0.160 Sum_probs=241.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC----CceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCC-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS----GAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSST- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~- 75 (387)
++|+|++++|++|+.||.|++||+.+ .+.+..+.+|..+|.+++|+|+ .. .+++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN----VLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT----BEEEECSSSCEEBCBTTTTSS
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC----EEEEEcCCCeEEEEECCCCcc
Confidence 57999999999999999999999987 4578889999999999999995 43 34458999999999998876
Q ss_pred -----ccccc----CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCC------CCCeEEEEEcCCC-C
Q 035621 76 -----PLHNI----PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAH------DKPVSCLKISPDG-S 138 (387)
Q Consensus 76 -----~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~ 138 (387)
....+ .+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+|++ .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 33332 36788999999998 789999999999999999999998888766 7899999999987 6
Q ss_pred EEEEEeCCC---cEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 139 LLISGGDDG---VIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 139 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
++++++.|+ .|++||++. ...+...+. +|...|.+++|+|.. +.+|++++.|+.|++||+++++
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~-~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRN-----------ANTPLQTLNQGHQKGILSLDWCHQD-EHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTS-----------TTSCSBCCCSCCSSCEEEEEECSSC-SSCEEEEESSSEEEEECSSSCC
T ss_pred EEEEEECCCCCceEEEEeCCC-----------CCCCcEEeecCccCceeEEEeCCCC-CCeEEEEeCCCCEEEeeCCCCc
Confidence 899999998 999999942 124556666 899999999999832 4899999999999999999999
Q ss_pred EEEEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccccc---------------------------cee
Q 035621 215 HLSTVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKG---------------------------QEL 265 (387)
Q Consensus 215 ~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------~~~ 265 (387)
++..+. +...|.+++|+|++ .++++++.|+.|++|++........... ...
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 998887 67889999999999 8999999999999999987543221100 000
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
.....|..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus 377 -~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 377 -QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred -cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 111226778889999999999999999999999999865
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-42 Score=306.04 Aligned_cols=293 Identities=11% Similarity=0.102 Sum_probs=222.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---c
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---P 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~ 76 (387)
++|+|++++|++|+.||.|+|||+.++ +.+..+.+|..+|.+++|+|++. .+++++.|+.|++||+.+++ .
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~----~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN----RIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC----CEEEEETTSSEEEC------CCCC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC----EEEEEeCCCeEEEEEcCCCCceee
Confidence 689999999999999999999999988 78888999999999999999654 44558999999999998877 3
Q ss_pred cc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621 77 LH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIAT 151 (387)
Q Consensus 77 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 151 (387)
.. ...|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|++++.|+.|++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 33 33477899999999999999999999999999998887 4677777 9999999999999999999999999999
Q ss_pred EeCCcccccCCC------CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE----EEEEe-
Q 035621 152 VPIFQLVDEHTD------DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH----LSTVT- 220 (387)
Q Consensus 152 wd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~- 220 (387)
||+......... ...+....+..+ .|...|.+++|+|++ ++|++++.|+.|++||+.+++. +..+.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG--NALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS--SCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC--CEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 998432111000 000124455556 899999999999985 8999999999999999999887 55555
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc-------------------------------c------
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-------------------------------Q------ 263 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------------~------ 263 (387)
+...|.+++|+|++++|++++.++.+ +|+............ .
T Consensus 250 ~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (377)
T 3dwl_C 250 SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD 328 (377)
T ss_dssp SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------
T ss_pred CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchh
Confidence 67789999999999999888766655 676652210000000 0
Q ss_pred ------eeEeecccccccEEEEEEecCC-C---EEEEEeCCCcEEEEEC
Q 035621 264 ------ELVTLANRHDGVVVSVMMMNEG-K---NLVSAAEDGSVYIWEI 302 (387)
Q Consensus 264 ------~~~~~~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~iwd~ 302 (387)
........|...|+++++.+.. . .|+||+.||.|++||+
T Consensus 329 ~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 329 LKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0011122499999999976543 3 6999999999999985
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.2e-42 Score=299.77 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=234.5
Q ss_pred ccccCC----CcEEEeeCCCCcEEEEeCCCCceeEeccC-----CCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 2 LHHLPC----NEVILTSSPEGPITAYNPSSGAILAHFSG-----SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+..-....+++++.||.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 578884 44566666677999999998887776654 557799999999632223455668999999999999
Q ss_pred CCCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621 73 SSTPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 73 ~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
+++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence 999888777 788999999999 9999999999999999999999988887 68999999999999999999999999
Q ss_pred cEEEEeCCcccccCC----------------CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 148 VIATVPIFQLVDEHT----------------DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
.|++||++....... ...............|...|.+++|+ ++++++++.|+.|++||++
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLILSKSCENAIVCWKPG 259 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEEEECSSSEEEEEEES
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEEEEecCCEEEEEeCC
Confidence 999999964311100 00000011223344599999999998 3799999999999999998
Q ss_pred CCcE--------------EEEEe-cCCceeEEEeCCC--CCeEEEEccCCcEEEEeccccccccccccceeEeecccc--
Q 035621 212 NGTH--------------LSTVT-FPCAIMGLALDPT--ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-- 272 (387)
Q Consensus 212 ~~~~--------------~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 272 (387)
++.. +..+. +...|.+++|+|+ +++|++++.||.|++||+....... .....+..|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~ 334 (366)
T 3k26_A 260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKC 334 (366)
T ss_dssp STTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTC
T ss_pred CccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEccccc
Confidence 7644 55555 6678999999999 9999999999999999998754321 122223355
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...|++++|+|++++|++++.||.|++||+.+
T Consensus 335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 335 GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 78999999999999999999999999999863
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-40 Score=288.48 Aligned_cols=289 Identities=15% Similarity=0.232 Sum_probs=231.9
Q ss_pred cEEEEeCCCCcee----EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-----------
Q 035621 19 PITAYNPSSGAIL----AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP----------- 83 (387)
Q Consensus 19 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~----------- 83 (387)
...+|+....... ....+|...|.+++|+|++.+++. ++ ++.+++|++.+++.+..+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~----g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT----GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEE----EC-BSCEEEEETTTCCEEEEECC------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEE----Ec-CCcEEEEEecCCCEEEEecCcccccccccccc
Confidence 3457776543321 122359999999999997765553 44 789999999998876655422
Q ss_pred --------CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 84 --------EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 84 --------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
..|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~- 194 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL- 194 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC-
Confidence 13899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceeE
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCAIMG 227 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~ 227 (387)
........+. +...+.+++++|.. +.+|++++.|+.|++||+++++.+..+. |...|.+
T Consensus 195 -----------~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 195 -----------RTGQCSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp -----------TTTEEEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred -----------CCCeeEEEEE-cCCCcEEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 3444444443 56789999999832 5899999999999999999998887762 5678999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
++|+|++++|++++.|+.|++||+......... ........+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999999864322111 01122233457999999999999999999999999999999999
Q ss_pred ccEEEEeecccCCCceeEEEEec
Q 035621 305 RQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 305 ~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
++++..+.+|. +.|.+++++++
T Consensus 342 ~~~~~~l~~h~-~~v~~v~~~~~ 363 (393)
T 1erj_A 342 GNPLLMLQGHR-NSVISVAVANG 363 (393)
T ss_dssp CCEEEEEECCS-SCEEEEEECSS
T ss_pred CeEEEEECCCC-CCEEEEEecCC
Confidence 99999998875 48888877653
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=296.95 Aligned_cols=281 Identities=18% Similarity=0.215 Sum_probs=243.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++|+.||.|++|| .+++.+..+.+|..+|.+++|+|+... +++++.|+.|++||+.+++.+..+.
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH----IISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE----EEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE----EEEEecCCeEEEEECCCCcEEEEee
Confidence 57999999999999999999999 678889999999999999999996543 4448899999999999998877776
Q ss_pred CC-CC---------------eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 82 VP-EP---------------VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 82 ~~-~~---------------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
.. .. +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++|++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 43 23 8999999985 5888889999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA 224 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 224 (387)
|+.|++||+ ........+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+. +...
T Consensus 268 d~~i~i~d~------------~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 268 DGTLRIWHG------------GNGNSQNCFYGHSQSIVSASWVGDD---KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp TSCEEEECS------------SSBSCSEEECCCSSCEEEEEEETTT---EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred CCEEEEEEC------------CCCccceEecCCCccEEEEEECCCC---EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 999999999 4556777888899999999999873 99999999999999999999988887 5789
Q ss_pred eeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-----------cccceeEeecccccc--cEEEEEEecCCCEEEEE
Q 035621 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----------HKGQELVTLANRHDG--VVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~ 291 (387)
+.+++|+|++++|++++.||.|++||+........ .........+..|.. .|++++|+|++++|+++
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999999999999999987441000 000113444556765 99999999999999999
Q ss_pred eCCCcEEEEECC
Q 035621 292 AEDGSVYIWEIE 303 (387)
Q Consensus 292 ~~dg~i~iwd~~ 303 (387)
+.||.|++||++
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.2e-41 Score=295.04 Aligned_cols=276 Identities=13% Similarity=0.163 Sum_probs=223.5
Q ss_pred ccccCCC-cEEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621 2 LHHLPCN-EVILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPL 77 (387)
Q Consensus 2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~ 77 (387)
++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| +. ..+++++.|+.|++||+.+....
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT----NQLFVSSIRGATTLRDFSGSVIQ 154 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE----EEEEEEETTTEEEEEETTSCEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC----CEEEEEeCCCEEEEEECCCCceE
Confidence 5799999 999999999999999999888777665 6999999999999 43 34445899999999999864332
Q ss_pred cccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621 78 HNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP 153 (387)
Q Consensus 78 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd 153 (387)
.... +...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence 2222 3367999999999999999999999999999 6778888999999999999999999 999999999999999
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC---------
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP--------- 222 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--------- 222 (387)
++... .....+..+ .|...|.+++|+| ++ .+|++++.|+.|++||+++++....+. +.
T Consensus 234 ~~~~~--------~~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T 3ei3_B 234 LRNIK--------DKNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP 302 (383)
T ss_dssp GGGCC--------STTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred CCCCC--------cccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence 94321 113344444 7999999999999 64 899999999999999999887665554 11
Q ss_pred --------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-cccccEEEEEEecCCCEEEEEeC
Q 035621 223 --------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-RHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 223 --------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
..+..++|+|++++ +++.|+.|++||+.++. .+..+.. .|...+..++|+|++++|++|+
T Consensus 303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~--------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s- 371 (383)
T 3ei3_B 303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG--------LVHQLRDPNAAGIISLNKFSPTGDVLASGM- 371 (383)
T ss_dssp CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC--------EEEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc--------eeeeecCCCCCceEEEEEEecCccEEEEec-
Confidence 23445677777766 77789999999998733 2333221 2567788889999999999997
Q ss_pred CCcEEEEECCC
Q 035621 294 DGSVYIWEIEK 304 (387)
Q Consensus 294 dg~i~iwd~~~ 304 (387)
||.|++||+++
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 99999999875
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-40 Score=332.42 Aligned_cols=365 Identities=14% Similarity=0.187 Sum_probs=283.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++.+..+.
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~d~~v~vwd~~~~~~~~~~~ 696 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY----IATCSADKKVKIWDSATGKLVHTYD 696 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCE----EEEEeCCCeEEEEECCCCceEEEEc
Confidence 589999999999999999999999999999999999999999999996544 4458999999999999999888775
Q ss_pred -CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 -VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 -~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
|...|.+++|+| ++.++++|+.|+.|++||+++++++..+.+|...|++++|+|+++++++++.||.|++||+....
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 678999999999 55689999999999999999999999999999999999999999999999999999999985432
Q ss_pred ccCCC-----------------------CCC-------------------CCccceEee-eccCCCeEEEEEeeCCCCce
Q 035621 159 DEHTD-----------------------DKN-------------------PDDLMLQKF-VAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 159 ~~~~~-----------------------~~~-------------------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 195 (387)
..... ... ........+ .+|...+.+++|+|++ .+
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~ 854 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HL 854 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TE
T ss_pred ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CE
Confidence 11000 000 011112222 3788899999999985 89
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc----------------
Q 035621 196 IISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ---------------- 258 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------- 258 (387)
+++++.|+.|++||+.++..+..+. |...|.+++|+|+++++++++.||.|++|++.......
T Consensus 855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 9999999999999999999888887 67889999999999999999999999999975321000
Q ss_pred ------------------------------------------------------ccccceeEeecccccccEEEEEEecC
Q 035621 259 ------------------------------------------------------MHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 259 ------------------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
............+|...|++++|+|+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence 00011122334578899999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe-------cCCCceeeEEEecCCCCCCC-------CCcc
Q 035621 285 GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT-------GIGGSRGCGVVKTGKAGNDS-------GGGV 350 (387)
Q Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~ 350 (387)
+++|++++.||.|++||+.+++.+... .| ...+.++.+.+ +.++.+.+|...++...... ....
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~~~~-~~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYVFLQ-AH-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEECCB-CC-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCceEEEe-cC-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence 999999999999999999999887533 33 45777775544 34455566665554431110 0111
Q ss_pred eeeeccceeccccccchhhhceee
Q 035621 351 FEMYGEKLLDLSIKNTIELENVMT 374 (387)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~ 374 (387)
+..-+...+..+.++++++|+..+
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSSS
T ss_pred ECCCCCEEEEEcCCCcEEEEECCC
Confidence 222233344555778888887654
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=294.56 Aligned_cols=292 Identities=13% Similarity=0.178 Sum_probs=230.1
Q ss_pred ccccCCCc-EEEeeCC---CCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-
Q 035621 2 LHHLPCNE-VILTSSP---EGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST- 75 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~- 75 (387)
++|+|++. ++++|+. ||.|+|||+.+++..... .+|..+|.+++|+|+.. ....+++++.||.|++||+.+++
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 102 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEM 102 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT-TTCCEEEEETTSCEEEECTTSCSS
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC-CCceEEEecCCCeEEEEeCCCCCc
Confidence 57999985 5566766 899999999988765443 36899999999999510 02344558999999999999887
Q ss_pred cccccC-CCCCeeeEE------eccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCC----CeEEEE----EcCCCCE
Q 035621 76 PLHNIP-VPEPVAPLA------TTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDK----PVSCLK----ISPDGSL 139 (387)
Q Consensus 76 ~~~~~~-~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~ 139 (387)
.+..+. |...|.+++ |+|++++|++++.||.|++||+++++ .+..+..|.+ .+.+++ |+|++++
T Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (357)
T 3i2n_A 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV 182 (357)
T ss_dssp CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE
T ss_pred cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE
Confidence 666665 678899995 57899999999999999999999887 6777766554 899998 7889999
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLST 218 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~ 218 (387)
+++++.||.|++||++ .... .....|...|.+++|+|.. ++.++++++.||.|++||+++++....
T Consensus 183 l~~~~~d~~i~i~d~~------------~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 183 VCAGYDNGDIKLFDLR------------NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEEEETTSEEEEEETT------------TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEEccCCeEEEEECc------------cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 9999999999999993 3333 4456788999999999821 248999999999999999987665433
Q ss_pred E------ecCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccc----------cceeEeecccccccEEEEEE
Q 035621 219 V------TFPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHK----------GQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 219 ~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~ 281 (387)
+ .+...|.+++|+|+++ ++++++.||.|++||++......... ..........|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 3 3778999999999998 89999999999999998654321100 01234445679999999999
Q ss_pred ecCCCEEE-EEeCCCcEEEEECCCccE
Q 035621 282 MNEGKNLV-SAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 282 s~~~~~l~-s~~~dg~i~iwd~~~~~~ 307 (387)
+|++++|+ +++.||.|++||+.+.+.
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCeEEEEecCCCcEEEEECCCccc
Confidence 99999998 899999999999987764
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-40 Score=297.75 Aligned_cols=285 Identities=13% Similarity=0.151 Sum_probs=234.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
..|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++.+..+.
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA----LISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCCCEEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE----EEEEeCCCeEEEEeCCCCcCceEEc
Confidence 368999999999999999999999999999999999999999999996544 4458999999999999998887776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC---CCCCeEE---------------------EEEcCC
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA---HDKPVSC---------------------LKISPD 136 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~---------------------~~~~~~ 136 (387)
|...|.+++|+|++++|++++.||.|++||+++++.+..+.. |...+.+ ++|+|+
T Consensus 179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 778999999999999999999999999999999998888864 3344444 455789
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
+++|++++.||.|++||++ .......+ ..|...|.+++|+|++ ..+|++++.||.|++||+++++.
T Consensus 259 ~~~l~~~~~dg~i~i~d~~------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVF------------SKEQTIQLPSKFTCSCNSLTVDGNN-ANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TEEEEEEETTSCEEEEETT------------TCCEEEEECCTTSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTS
T ss_pred CCEEEEEcCCCeEEEEECC------------CCceeEEcccccCCCceeEEEeCCC-CCEEEEEeCCCeEEEEEcCCCcC
Confidence 9999999999999999993 33444444 4588999999999985 23999999999999999998754
Q ss_pred -EEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC---EEE
Q 035621 216 -LSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK---NLV 289 (387)
Q Consensus 216 -~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~ 289 (387)
+..+. +...+.++.+ +++++|++++.|+.|++|++....................|...|.+++|+|+++ .++
T Consensus 326 ~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 326 PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 55555 5567777755 5788999999999999999987432221111111222347889999999999999 788
Q ss_pred EEeCCCcEEEEECCC
Q 035621 290 SAAEDGSVYIWEIEK 304 (387)
Q Consensus 290 s~~~dg~i~iwd~~~ 304 (387)
+.+.+|.+.+|++++
T Consensus 405 a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 405 EVGKNNFCALYNLSN 419 (420)
T ss_dssp EEETTTEEEEEESCC
T ss_pred EEcCCceEEEEeccC
Confidence 888899999999875
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=318.49 Aligned_cols=196 Identities=15% Similarity=0.234 Sum_probs=168.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++||+|+.||.|+||+..+.+....+. |..+|.+++|+| +. ++++++.|++|++||+.+++++..+.
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~~~~~~~~~ 96 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYSQKVLTTVF 96 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT----EEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCCCcEEEEEc
Confidence 6899999999999999999999998877766654 788999999999 33 34448899999999999999988888
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-----------EEccCCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-----------RSFSAHDKPVSCLKISPD-GSLLISGGDDGVI 149 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 149 (387)
+...|.+++|+|++++|++|+.||.|++||++++++. ..+.+|.++|++++|+|+ +..+++|+.||.|
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 8889999999999999999999999999999988753 234679999999999996 5789999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeec------------------cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVA------------------HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
+||++ ....+..+.. |...|.+++|+|++ .+|++++.||+|++||++
T Consensus 177 -lWd~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 177 -TYSLV------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp -EEETT------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETT
T ss_pred -EEECC------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECC
Confidence 99994 3344444443 35789999999985 899999999999999999
Q ss_pred CCcEEEE
Q 035621 212 NGTHLST 218 (387)
Q Consensus 212 ~~~~~~~ 218 (387)
+++++..
T Consensus 242 ~g~~~~~ 248 (902)
T 2oaj_A 242 SGHMIMA 248 (902)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 8877653
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-39 Score=292.18 Aligned_cols=286 Identities=16% Similarity=0.303 Sum_probs=248.9
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP- 81 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~- 81 (387)
+++++|++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+++ .+++++.||.|++||+.+++.+..+.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC------EEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 56788999999999999999999999999999999999999999863 34458899999999999998887776
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
|...|.+++|+ ++.+++|+.||.|++||+++++.+..+.+|...|.+++| +++++++++.||.|++||+
T Consensus 198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~------- 266 (445)
T 2ovr_B 198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP------- 266 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG-------
T ss_pred CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC-------
Confidence 67789999995 568999999999999999999999999999999999999 7789999999999999999
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 240 (387)
.....+..+.+|...|.++.+ + +.++++++.|+.|++||+++++.+..+. +...+.++.+ ++++++++
T Consensus 267 -----~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 335 (445)
T 2ovr_B 267 -----ETETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSG 335 (445)
T ss_dssp -----GGTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEE
T ss_pred -----CCCcEeEEecCCCCceEEEEE--C--CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEE
Confidence 556678888899999999998 3 4899999999999999999999998887 5667777776 56799999
Q ss_pred ccCCcEEEEeccccccccccccceeEeec--ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee----cc
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLA--NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK----NE 314 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~ 314 (387)
+.||.|++||+.++. ....+. ..|...|++++|+ +++|++|+.||.|++||+.+++.+..+. ..
T Consensus 336 ~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 405 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQ--------CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405 (445)
T ss_dssp ETTSCEEEEETTTCC--------EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred eCCCeEEEEECCCCc--------EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence 999999999998732 222221 2488899999995 5799999999999999999999998883 24
Q ss_pred cCCCceeEEEEe
Q 035621 315 LAGSISEMVIAT 326 (387)
Q Consensus 315 ~~~~v~~~~~~~ 326 (387)
+.+.|+++.|++
T Consensus 406 ~~~~v~~~~~s~ 417 (445)
T 2ovr_B 406 SGGVVWRIRASN 417 (445)
T ss_dssp GTCEEEEEEECS
T ss_pred CCceEEEEEecC
Confidence 466888888875
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-39 Score=277.88 Aligned_cols=274 Identities=16% Similarity=0.190 Sum_probs=234.5
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---ccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~ 78 (387)
++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|+..+. ++++.|+.+++|++.... ...
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l----~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL----LFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE----EEEETTSCEEEEETTCCTTSCC-C
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE----EEecCCCeEEEEEeeecCCCCccc
Confidence 467 899999999999999999999999999999999999999999965544 448999999999997653 333
Q ss_pred ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCc
Q 035621 79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+. |...|.+++| +++++++++.||.|++|| .++....+..|...+.+++|.| +++++++++.||.|++||..
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~- 173 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND- 173 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-
Confidence 333 6788999999 577999999999999999 6778888889999999999998 89999999999999999862
Q ss_pred ccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE 234 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 234 (387)
.....+.. |...+.+++|+|++ . +++++.|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus 174 -------------~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 174 -------------KVIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp -------------EEEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred -------------ceEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 23445555 88999999999985 4 9999999999999999999999887 77899999999999
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.+++++.||.|++||+.... ....+..|...|.+++|+|+++ +++++.||.|++||+++++.+....
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGS---------LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCC---------EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred -CEEEEecCCEEEEEECCCCc---------eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 69999999999999998732 2333457888999999999998 6678999999999999988776554
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-39 Score=279.31 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=206.1
Q ss_pred ceeEeccCCCCCceeEEE-----cC-ccceeeeccccCCCCCeEEEEEccCCC-------ccccc-CCCCCeeeEEeccC
Q 035621 29 AILAHFSGSRSPRRGLTF-----AG-KPFIAASHISPTTGSGSVHLYNLWSST-------PLHNI-PVPEPVAPLATTAD 94 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~-----~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~-------~~~~~-~~~~~v~~~~~~~~ 94 (387)
+....+.+|..+|++++| ++ +. ..+++++.|++|++||+.+.+ +...+ .|...|.+++|+|+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~----~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDS----PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCC----CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCC----CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 456678999999999999 54 33 345569999999999997543 22233 37789999999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
+.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. .....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-------------~~~~~ 154 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-------------ECKFS 154 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-------------CEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-------------Cceee
Confidence 99999999999999999999999999999999999999999999999999999999999831 11222
Q ss_pred ---eeccCCCeEEEEEeeCCC--------CceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 175 ---FVAHNDSVTAITCCIGSF--------NSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 175 ---~~~~~~~i~~~~~~~~~~--------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
...|...|.+++|+|... +.+|++++.|+.|++||. +.+....+. |...|.+++|+|++++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 236888999999998742 268999999999999994 455555665 7789999999999999999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
||.|++||+.... .....+ .+...|.+++|+|++.+++++ .|+.|++||+.+++...
T Consensus 234 dg~v~iwd~~~~~-------~~~~~~--~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 234 DKKLLIWDILNLT-------YPQREF--DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp TCEEEEEESSCCS-------SCSEEE--ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred CCeEEEEECCCCc-------ccceee--cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence 9999999995421 111111 245679999999999887755 57889999998876554
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=297.32 Aligned_cols=282 Identities=15% Similarity=0.178 Sum_probs=226.3
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCC---Cc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSS---GA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-- 72 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-- 72 (387)
++|+| ++++|++|+.||.|+|||+.+ +. ....+ +|..+|.+++|+|+... +++++.||.|++||+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~----l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA----FAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE----EEEEETTSEEEEEEEEEE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE----EEEEeCCCEEEEEEeccc
Confidence 57999 999999999999999999876 43 22333 48999999999995543 4458999999999995
Q ss_pred -CCCcccccC-------------CCCCeeeEE--eccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEc
Q 035621 73 -SSTPLHNIP-------------VPEPVAPLA--TTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKIS 134 (387)
Q Consensus 73 -~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~ 134 (387)
+++...... +...+.++. +++++.+|++++.||.|++||+++++++..+.. |...|++++|+
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 223 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID 223 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC
Confidence 444433222 345566666 557899999999999999999999999999987 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeC--CCCceEEEEeCCCcEEEEeCC
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIG--SFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~~~l~s~~~d~~i~iwd~~ 211 (387)
|++++|++|+.||.|++||+ .....+..+. .|..+|.+++++|. .++.+|++++.|+.|++||++
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDI------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp TTSCEEEEEETTSCEEEEET------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCEEEEEcCCCeEEEEEc------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 99999999999999999999 4556667665 78889999988765 346799999999999999999
Q ss_pred CCcEEEEEe---------------------------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc-
Q 035621 212 NGTHLSTVT---------------------------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ- 263 (387)
Q Consensus 212 ~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 263 (387)
+++++..+. +...|.+++|+ ++++|++++.|+.|++||+..+.........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 999888876 33458888999 7789999999999999999886543322110
Q ss_pred ---------------------------eeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEE
Q 035621 264 ---------------------------ELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 264 ---------------------------~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd 301 (387)
........|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000112248999999999998 77999999999999995
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-41 Score=302.83 Aligned_cols=286 Identities=9% Similarity=0.013 Sum_probs=213.2
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCcee----EeccCCCCCceeEEEcCccce--eeeccccCCCCCeEEEEEccCCCcc-
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAIL----AHFSGSRSPRRGLTFAGKPFI--AASHISPTTGSGSVHLYNLWSSTPL- 77 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~- 77 (387)
+|+++.|++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+... ....+++++.||+|++||+.++...
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344455666778999999999877642 346678889999999995211 1235666999999999999876432
Q ss_pred ----------ccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEE--EEcCCC-CEEEE
Q 035621 78 ----------HNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCL--KISPDG-SLLIS 142 (387)
Q Consensus 78 ----------~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~ 142 (387)
..+ .|...|.+++|++++ .|++|+.||+|++||+++++ +...+.+|...|+++ +|+|++ .+|++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 122 256789999999864 89999999999999998764 455688999999999 578887 89999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 220 (387)
++.|++|++||++ .......+.+|.. .|.+++|+|++ ..+++++.|++|++||++++.++..+.
T Consensus 329 ~S~D~tvklWD~~------------~~~~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 329 VAVDGYFYIFNPK------------DIATTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp EETTSEEEEECGG------------GHHHHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred eccCCeEEEEECC------------CCCcccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceeee
Confidence 9999999999993 4445555666653 57899999975 789999999999999999998876665
Q ss_pred -cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc---------------c--c-cc-----------------ce
Q 035621 221 -FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ---------------M--H-KG-----------------QE 264 (387)
Q Consensus 221 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------~--~-~~-----------------~~ 264 (387)
|...|++++|+|++++|++|+.||.|++||........ . . .+ ..
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~ 474 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV 474 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence 78899999999999999999999999999864321100 0 0 00 11
Q ss_pred eEeecccccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCc
Q 035621 265 LVTLANRHDGVVVSVMMMNEGK---NLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 265 ~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~ 305 (387)
....+.+|...|.+++|+|++. .+|+|+.||.|+||++...
T Consensus 475 ~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 475 SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 2233457889999999999964 9999999999999997743
No 61
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=275.55 Aligned_cols=280 Identities=21% Similarity=0.306 Sum_probs=231.7
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++.+. ++|+.||.|++||+++++++.
T Consensus 30 ~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l----~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 30 LVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL----AVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE----EEEETTSEEEEEETTTTEEEE
T ss_pred EEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE----EEEECCCcEEEeecCCceeEE
Confidence 37899886 777765 8999999999999887664 677889999999965544 459999999999999998887
Q ss_pred ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+. |...+.+ +++++..+++++.++.+++|+.... ..+..+.+|...+..+.++++++++++++.|+.|++||+..
T Consensus 104 ~~~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 104 NMTSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EecCccceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 776 4445554 4556789999999999999998766 45667789999999999999999999999999999999953
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE--EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII--ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE 234 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 234 (387)
.. ...........+...|.++.++|.. +..+ ++++.+++|++||...........+...+..+.|+|++
T Consensus 182 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 182 GE--------GGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 252 (318)
T ss_dssp BT--------TBSCCSEEECCCCSCEEEEEECTTS-TTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTT
T ss_pred Cc--------ccccceeeecccCCceEEEEecCCC-CcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccc
Confidence 21 1223445566788899999999876 3333 46677899999999999999888899999999999999
Q ss_pred CeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 235 TDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 235 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
+.+++++ .|+.|++||+.++ .. ...+.+|.+.|++++|+|++++|+||+.||+|+|||+.+..
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~--------~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTM--------AK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTC--------CE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cceEEEEEcCCCEEEEEECCCC--------cE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9888764 6999999999873 22 33446899999999999999999999999999999997653
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-39 Score=274.26 Aligned_cols=254 Identities=13% Similarity=0.155 Sum_probs=207.2
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--CcccccC-CCCCeeeEEecc--CCCEEEEecCCCc
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLHNIP-VPEPVAPLATTA--DGSYLFTGGLSGN 106 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~ 106 (387)
..+.+|...|++++|+|++.. +++++.|++|++||+... +.+..+. |..+|.+++|++ ++++|++|+.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~----las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKR----MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSE----EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCCE----EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 457889999999999996544 455999999999999753 4555554 778999999986 3899999999999
Q ss_pred EEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 107 VYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 107 i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.. .......+.+|...|
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~----------~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN----------GTTSPIIIDAHAIGV 148 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS----------SCBCCEEEECCSSCE
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC----------CceeeeeeecccCcc
Confidence 9999998874 56677889999999999997 889999999999999999431 111235678899999
Q ss_pred EEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceeEEEeCCCC---CeEEEEccC
Q 035621 183 TAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGT----HLSTVT-FPCAIMGLALDPTE---TDFFAAGSD 243 (387)
Q Consensus 183 ~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~---~~l~~~~~d 243 (387)
.+++|+|+. ++++|++|+.|++|++||+++++ ....+. |...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 999999863 24699999999999999998776 445555 77899999999985 889999999
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.|++||+....... .........|...|.+++|+|++++|++++.||.|++|+..
T Consensus 229 ~~v~iWd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CcEEEEEeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999997632110 00011113678899999999999999999999999999976
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.6e-40 Score=293.22 Aligned_cols=281 Identities=14% Similarity=0.213 Sum_probs=234.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.++++++++|++|+.||.|++||+.+++....+.+|..+|.+++|.++ .+++++.||.|++||+.+++.+..+.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER------VIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS------EEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCC------EEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 467789999999999999999999999999999999999999999542 34458899999999999998887776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee---EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL---RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
|...|.+++|++ +.+++|+.||.|++||+++++.. ..+.+|...|.+++| +++++++++.||.|++||+
T Consensus 211 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~--- 283 (435)
T 1p22_A 211 HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT--- 283 (435)
T ss_dssp CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---
T ss_pred CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC---
Confidence 667899999974 59999999999999999888765 667789999999999 7789999999999999999
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD 236 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 236 (387)
.....+..+.+|...|.++.+. +.++++|+.||.|++||+++++++..+. +...|.+++| ++.+
T Consensus 284 ---------~~~~~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 284 ---------STCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp ---------TTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred ---------CcCcEEEEEcCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 5667888899999999999883 3799999999999999999999999888 7788999999 7889
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
+++|+.||.|++||+.................+.+|.+.|++++| ++++|++|+.||.|++||+.+........
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 999999999999999875432222122244445689999999999 78899999999999999999877655443
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-39 Score=299.90 Aligned_cols=294 Identities=13% Similarity=0.102 Sum_probs=249.0
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++|+|+++ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +.+ +++++.|+.|++||+.+++.
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCCE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE----EEEEeCCCeEEEEECCCCCE
Confidence 57999998 899999999999999999999999999999 9999999996 544 44488999999999999999
Q ss_pred cccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCC
Q 035621 77 LHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 77 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
+..+ .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ...+.++.|. +++++++++.||
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 8888 678899999999 9999999999999999999999998888766 3678888886 889999999999
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEee---------------------------------eccCCCeEEEEEeeCCCCc
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKF---------------------------------VAHNDSVTAITCCIGSFNS 194 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~~~~~~~~~~ 194 (387)
.|++||+.. ...+..+ ..|...|.+++| +. +.
T Consensus 320 ~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~--~~ 384 (615)
T 1pgu_A 320 TLNFYELGH------------DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SK--AQ 384 (615)
T ss_dssp CEEEEETTE------------EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CS--TT
T ss_pred CEEEEECCC------------CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CC--Cc
Confidence 999999953 2233333 345566666666 22 36
Q ss_pred eEEEEeCCCcEEEEeCC----------------------------------CCcEEEEEecCCceeEEEeCCCCCeEEEE
Q 035621 195 IIISCSMDCTCKFWRLL----------------------------------NGTHLSTVTFPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 240 (387)
.+++++.|+.+++||+. +++.+..+.+...+.+++|+ +++++++
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 462 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVG 462 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEE
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEe
Confidence 88888888888888875 45566667778899999999 8899999
Q ss_pred cc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621 241 GS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI 319 (387)
Q Consensus 241 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 319 (387)
+. |+.|++||+..... .......|...|++++|+|++++|++++.||.|++||+.+++++..+...+...|
T Consensus 463 ~~~d~~i~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEV--------SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 534 (615)
T ss_dssp ETTTSCEEEEETTEEEE--------EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred ecCCCeEEEEECCCccc--------cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence 99 99999999987321 1134457999999999999999999999999999999999999999887346689
Q ss_pred eeEEEEe
Q 035621 320 SEMVIAT 326 (387)
Q Consensus 320 ~~~~~~~ 326 (387)
+++.|++
T Consensus 535 ~~~~~sp 541 (615)
T 1pgu_A 535 NAISWKP 541 (615)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999987
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=287.36 Aligned_cols=297 Identities=12% Similarity=0.116 Sum_probs=233.2
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCCCceeEecc-------------CCCCCceeEEEcC-ccceeeeccccCCCCCeE
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSSGAILAHFS-------------GSRSPRRGLTFAG-KPFIAASHISPTTGSGSV 66 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v 66 (387)
++|+| ++++|++|+.||.|++||+.+++....+. +|..+|.+++|+| +..+ +++++.||.|
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~s~~~d~~i 124 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM----FTSSSFDKTL 124 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC----EEEEETTSEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE----EEEEeCCCeE
Confidence 67999 99999999999999999999887655443 5999999999999 4433 3448899999
Q ss_pred EEEEccCCCcccccCCCCCeeeEEeccC---CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEE
Q 035621 67 HLYNLWSSTPLHNIPVPEPVAPLATTAD---GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLIS 142 (387)
Q Consensus 67 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 142 (387)
++||+.+++....+.+...+.++.+++. +.++++++.+|.|++||+++++.+..+..|...|.+++|+|+++ ++++
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT 204 (408)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE
T ss_pred EEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE
Confidence 9999999999988889999999999984 45999999999999999999999999999999999999999998 5899
Q ss_pred EeCCCcEEEEeCCcccccCC----CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621 143 GGDDGVIATVPIFQLVDEHT----DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST 218 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 218 (387)
++.||.|++||++....... ...............|...|.+++|+|++ ++|++++.|+.|++||+.+++....
T Consensus 205 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCcccee
Confidence 99999999999964321100 00001112223336789999999999974 8999999999999999999876544
Q ss_pred Eec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 219 VTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 219 ~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
+.. ...+........+..+++++.++.|++||+... .....+.+|...|++++|+|++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 331 122223333345567888888999999999873 22333457999999999999999999999
Q ss_pred CCCcEEEEECCCccEEEEeec
Q 035621 293 EDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~ 313 (387)
.||.|++||+.+++.+.....
T Consensus 354 ~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 354 RDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp TTSCEEEEEECC---------
T ss_pred CCCeEEEEeCCCCCccCCCCc
Confidence 999999999999988876554
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-39 Score=312.58 Aligned_cols=316 Identities=11% Similarity=0.093 Sum_probs=229.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee-----------EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL-----------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN 70 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~ 70 (387)
++|+|++++|++|+.||.|++||+.+++.. ..+.+|.++|.+++|+|+. ...+++++.|+.| +||
T Consensus 104 v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~---~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 104 IDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD---IGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE---EEEEEEECSSCEE-EEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC---CCEEEEEeCCCcE-EEE
Confidence 679999999999999999999999988753 3457799999999999952 2344558999999 999
Q ss_pred ccCCCcccccCCC-------------------CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--cc---C---
Q 035621 71 LWSSTPLHNIPVP-------------------EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FS---A--- 123 (387)
Q Consensus 71 ~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~---~--- 123 (387)
+.+++++..+... ..|.+++|+|+|++|++|+.||.|++||+++++++.. +. .
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~ 259 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP 259 (902)
T ss_dssp TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence 9998877666532 6799999999999999999999999999999987653 21 1
Q ss_pred ----------CCCCeEEEEEc----CCC-CEEEEEeCC-----CcEEEEeCCc-----------------------cccc
Q 035621 124 ----------HDKPVSCLKIS----PDG-SLLISGGDD-----GVIATVPIFQ-----------------------LVDE 160 (387)
Q Consensus 124 ----------~~~~v~~~~~~----~~~-~~l~~~~~d-----g~i~iwd~~~-----------------------~~~~ 160 (387)
|..+|++++|+ |++ .++++|+.| ..+.+|++.. ....
T Consensus 260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (902)
T 2oaj_A 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL 339 (902)
T ss_dssp CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence 34579999995 443 467777665 3677887410 0000
Q ss_pred -CC------------CC-----CC------------------CCccce-------EeeeccCCCeEEEEE----------
Q 035621 161 -HT------------DD-----KN------------------PDDLML-------QKFVAHNDSVTAITC---------- 187 (387)
Q Consensus 161 -~~------------~~-----~~------------------~~~~~~-------~~~~~~~~~i~~~~~---------- 187 (387)
.. .. .. ..+... ..+..|...|+++++
T Consensus 340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 00 00 00 000000 011223345555555
Q ss_pred ------------------------eeCCCCceEEEEeCCCcEEEEeCCCCcEE----EEE--------ecCCceeEEEeC
Q 035621 188 ------------------------CIGSFNSIIISCSMDCTCKFWRLLNGTHL----STV--------TFPCAIMGLALD 231 (387)
Q Consensus 188 ------------------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~--------~~~~~v~~~~~~ 231 (387)
+|+ +++|++|+.|++|++||+.++... ... .|...|.+++|+
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~spd--g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPAEY--GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCCSE--EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred HHhcccCCCCcccCCcCCCCccccccc--CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 343 589999999999999999887421 111 356789999999
Q ss_pred CCCCeEEEEccCCcEEEEecccccccc------------------c------------------cccceeEeeccccccc
Q 035621 232 PTETDFFAAGSDGLIYKGLLKYQSRQQ------------------M------------------HKGQELVTLANRHDGV 275 (387)
Q Consensus 232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------~------------------~~~~~~~~~~~~~~~~ 275 (387)
|++++|++|+.||.|++|++....... . ..+......+.+|.+.
T Consensus 498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~ 577 (902)
T 2oaj_A 498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK 577 (902)
T ss_dssp TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence 999999999999999999998652100 0 0001234455679999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE--e---e-cccCCCceeEEEE
Q 035621 276 VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV--L---K-NELAGSISEMVIA 325 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~---~-~~~~~~v~~~~~~ 325 (387)
|++++|+||| +||+|+.|++|++||+++++.+.. + . +| .+.|++++|+
T Consensus 578 V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs 631 (902)
T 2oaj_A 578 TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFV 631 (902)
T ss_dssp EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEE
T ss_pred EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEE
Confidence 9999999999 999999999999999998887652 2 1 33 4579999998
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.4e-39 Score=299.51 Aligned_cols=291 Identities=16% Similarity=0.209 Sum_probs=254.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCC-ceeEEEcC--ccceeeeccccCCCCCeEEEEEccCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHFSGSRSP-RRGLTFAG--KPFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
++|+|+|++|++++ ++.|+|||+.++ +....+.+|... |.+++|+| ++.++++ ++.||.|++||+.++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s----~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDESGKVIVWGWTFD 98 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETTSEEEEEEEEEE
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE----ecCCCEEEEEeCCCC
Confidence 68999999999998 789999999999 889999999999 99999999 8765544 889999999999754
Q ss_pred --------CcccccC-CCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EE
Q 035621 75 --------TPLHNIP-VPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LL 140 (387)
Q Consensus 75 --------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 140 (387)
+....+. +..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|+++ ++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE
Confidence 4444444 67899999999999999999887 6888888 6778889999999999999999998 89
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC---CeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND---SVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
++++.|+.|++||+ .....+..+..|.. .|.+++|+|+ + ++|++++.|+.|++||+++++.+
T Consensus 177 ~~~~~d~~v~vwd~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 177 MTVGDDGSVVFYQG------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EEEETTTEEEEEET------------TTBEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcEEEEeC------------CCcceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEe
Confidence 99999999999998 56677888889999 9999999988 5 89999999999999999999999
Q ss_pred EEE-----ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEE
Q 035621 217 STV-----TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNL 288 (387)
Q Consensus 217 ~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l 288 (387)
..+ .+...|.+++|+ +++++++++.|+.|++||+..... ...+. ..+...+.++.|+ +++++
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~l 312 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC--------VQKWTLDKQQLGNQQVGVVAT-GNGRI 312 (615)
T ss_dssp EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE--------EEEEECCTTCGGGCEEEEEEE-ETTEE
T ss_pred EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE--------EEEEcCCCCcccCceeEEEeC-CCCeE
Confidence 998 678899999999 999999999999999999987432 22211 1235678888886 88999
Q ss_pred EEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 289 VSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
++++.||.|++||+.+++++..+..|. +.|+++.|
T Consensus 313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~v~~~~~ 347 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEVLKTISGHN-KGITALTV 347 (615)
T ss_dssp EEEETTSCEEEEETTEEEEEEEECCCS-SCEEEEET
T ss_pred EEEECCCCEEEEECCCCcEEEEEeCCC-CCEEEEEe
Confidence 999999999999999999999998764 48888876
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-39 Score=310.80 Aligned_cols=279 Identities=15% Similarity=0.179 Sum_probs=242.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|++++|++|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++.. +++++.||.|++||+.+++.+..+.
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW----IIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE----EEEEeCCCeEEEEECCCCcEEEEEe
Confidence 689999999999999999999999999999999999999999999996544 4458899999999999998888776
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~--- 171 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--- 171 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT---
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC---
Confidence 7789999999999999999999999999999887 66778889999999999999 88999999999999999993
Q ss_pred ccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621 159 DEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 236 (387)
.......+..+. ..+.+++|+|.+++.++++++.||.|++||+.+++.+..+. +...+.+++|+|++++
T Consensus 172 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 172 ---------QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (814)
T ss_dssp ---------CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred ---------CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 334444554444 89999999995556999999999999999999999988887 6789999999999999
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCcc
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK--NLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~ 306 (387)
+++++.||.|++||+.+.. .......|...+.+++|+|++. +++++ .|+.+.+|++..+.
T Consensus 243 l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEEETTSCEEEEETTTCS---------EEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred EEEEeCCCeEEEEECCCCc---------EEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence 9999999999999998732 2233446788999999999987 35555 56678999977543
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=292.54 Aligned_cols=287 Identities=8% Similarity=0.124 Sum_probs=221.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-----------eeEeccCCC------------CCceeEEEcCccceeeeccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-----------ILAHFSGSR------------SPRRGLTFAGKPFIAASHIS 58 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~ 58 (387)
++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. .+|.+++|+|+.. ...++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~--~~~l~ 111 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN--AAQFL 111 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS--SSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC--cceEE
Confidence 6899999999999999999999998877 577889998 8899999999541 03344
Q ss_pred cCCCCCeEEEEEccCCCcc-----------------------------------------cccCCCCCeeeEEeccCCCE
Q 035621 59 PTTGSGSVHLYNLWSSTPL-----------------------------------------HNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 59 ~~~~d~~v~vw~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~~~~~~~ 97 (387)
+++.|+.|++||+.++... ....|...|.+++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 5889999999999764331 01347788999999999999
Q ss_pred EEEecCCCcEEEEeCCC-CceeE-------EccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621 98 LFTGGLSGNVYAISVPK-GDILR-------SFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 98 l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
|++| .|+.|++||+++ ++.+. .+..|...|++++|+|++ ++|++++.||.|++||++.... .
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------~ 262 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL--------C 262 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS--------S
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc--------c
Confidence 9999 799999999984 44444 366899999999999998 9999999999999999943211 0
Q ss_pred ccceEeeeccCC------------CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEecCCc-----------
Q 035621 169 DLMLQKFVAHND------------SVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTFPCA----------- 224 (387)
Q Consensus 169 ~~~~~~~~~~~~------------~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~----------- 224 (387)
......+..|.. .|.+++|+|++ ++|++++. +.|++||+++ ++++..+..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS--SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCC--CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 112456666665 99999999974 89999998 9999999997 888777774443
Q ss_pred -----eeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc-----------------------ceeEeecccccccE
Q 035621 225 -----IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-----------------------QELVTLANRHDGVV 276 (387)
Q Consensus 225 -----v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~v 276 (387)
+..++|+|++++|++++.||.|++||+..+........ .........+...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 33499999999999999999999999987543211000 00000011345679
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
..++|+|++++||+++.++ +++|.-+
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eEEEECCCCCEEEEEecce-eeeeccc
Confidence 9999999999999998775 8888644
No 70
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.8e-38 Score=270.40 Aligned_cols=276 Identities=18% Similarity=0.250 Sum_probs=228.7
Q ss_pred CCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----ccccC-CCCCeeeEEeccCCCEEE
Q 035621 26 SSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-----LHNIP-VPEPVAPLATTADGSYLF 99 (387)
Q Consensus 26 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~l~ 99 (387)
++.++..+|++|.++|++++|+|+. ...++|++.|++|++||+.+.+. ...+. |...|.+++|+|++++|+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~---~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTC---TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCC---CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 3445667899999999999999952 12345589999999999987653 22333 678999999999999999
Q ss_pred EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC
Q 035621 100 TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN 179 (387)
Q Consensus 100 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (387)
+++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.. .........+|.
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~-----------~~~~~~~~~~~~ 171 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-----------VCKYTVQDESHS 171 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-----------CEEEEECSSSCS
T ss_pred EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC-----------CceEEEEecccc
Confidence 999999999999999988888888889999999999999999999999999999832 223345567889
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ 258 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 258 (387)
..+..++++++....++++++.|+.|++||+++++.+..+. +...|.+++|+|++++|++++.||.|++||++...
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--- 248 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--- 248 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE---
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc---
Confidence 99999999998777889999999999999999999988887 77899999999999999999999999999998732
Q ss_pred ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc--------cCCCceeEEEEe
Q 035621 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE--------LAGSISEMVIAT 326 (387)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~ 326 (387)
.+..+ .+...|.+++|+|++.+ ++++.|+.|++||++++..+..+..+ +.+.|++++|++
T Consensus 249 -----~~~~~--~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 249 -----HLYTL--DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp -----EEEEE--ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred -----eeeee--cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 22222 35568999999998765 55667999999999999888777642 344677776544
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=291.60 Aligned_cols=287 Identities=9% Similarity=0.098 Sum_probs=232.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccC---CC-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWS---ST- 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~---~~- 75 (387)
..|+|++..+++++ .|+ .+++.+..+ .+|.++|++++|+| ++.+++ +++.||.|++||+.+ +.
T Consensus 33 ~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~----s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLI----TGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEE----EEETTSEEEEEEHHHHHTTCC
T ss_pred hhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEE----EecCCceEEEeECcccccCcc
Confidence 35889998888776 388 468888888 89999999999999 765444 489999999999976 43
Q ss_pred --cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---CCceeEEcc----------C--CCCCeEEEE--EcCC
Q 035621 76 --PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---KGDILRSFS----------A--HDKPVSCLK--ISPD 136 (387)
Q Consensus 76 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~----------~--~~~~v~~~~--~~~~ 136 (387)
....+.|...|.+++|+|++++|++++.||.|++||++ +++....+. . +...+.++. ++++
T Consensus 102 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 102 YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 34444588999999999999999999999999999994 555444332 1 456677777 5678
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
++++++++.|+.|++||+ .....+..+.. |...|.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 182 ~~~l~~~~~d~~i~iwd~------------~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDI------------RTLERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp CEEEEEEETTSEEEEEET------------TTCCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEeCCCeEEEEeC------------CCCeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCcc
Confidence 999999999999999999 56667788877 89999999999884 999999999999999999999
Q ss_pred EEEEEe--cCCceeEEEeC----CCCCeEEEEccCCcEEEEeccccccccccccce--eE--e-----------eccc--
Q 035621 215 HLSTVT--FPCAIMGLALD----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE--LV--T-----------LANR-- 271 (387)
Q Consensus 215 ~~~~~~--~~~~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~--~-----------~~~~-- 271 (387)
++..+. +...|.+++|+ |++.+|++++.||.|++||+..+.......... +. . .+.+
T Consensus 248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (437)
T 3gre_A 248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR 327 (437)
T ss_dssp EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence 998875 56789999555 567899999999999999998754322211100 00 0 0122
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
|...|++++|+ ++++|++|+.||.|++||+.+++.+..+.++
T Consensus 328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 88889999999 7799999999999999999999999988876
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-39 Score=325.62 Aligned_cols=298 Identities=18% Similarity=0.248 Sum_probs=256.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc----
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL---- 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~---- 77 (387)
++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++.. +++++.|+.|++|++.+....
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~----l~s~s~dg~v~vw~~~~~~~~~~~~ 921 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS----FLTASDDQTIRVWETKKVCKNSAIV 921 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE----EEEEeCCCeEEEEEccccceeeeec
Confidence 579999999999999999999999999999999999999999999996544 445899999999997532110
Q ss_pred ----------------------------------cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621 78 ----------------------------------HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 78 ----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 123 (387)
........+.+++|+|+++++++|+.+|.|++||+.+++....+.+
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence 0011345789999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
|...|++++|+|+++++++++.||.|++||+. ... ......|...+.++.++++ ..+++++.|+
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~------------~~~-~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg 1065 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ------------TGD-YVFLQAHQETVKDFRLLQD---SRLLSWSFDG 1065 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETT------------TTE-EECCBCCSSCEEEEEECSS---SEEEEEESSS
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECC------------CCc-eEEEecCCCcEEEEEEcCC---CcEEEEECCC
Confidence 99999999999999999999999999999993 332 2345689999999999986 5789999999
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEe
Q 035621 204 TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM 282 (387)
Q Consensus 204 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (387)
.|++||+.+++....+. +...|.+++|+|+++++++++.||.|++||+..... ...+.+|...|++++|+
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~---------~~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP---------LHELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC---------SBCCCCCSSCEEEEEEC
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce---------eeeeccCCCcEEEEEEC
Confidence 99999999999988887 778899999999999999999999999999987432 22345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCccEEEEee--------cccCCCceeEEEEecC
Q 035621 283 NEGKNLVSAAEDGSVYIWEIEKRQVVMVLK--------NELAGSISEMVIATGI 328 (387)
Q Consensus 283 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~ 328 (387)
|++++|++|+.||.|++||+.+++.+..+. ..+.+.|++++|++..
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence 999999999999999999999999887661 2345689999887654
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-38 Score=280.15 Aligned_cols=275 Identities=14% Similarity=0.147 Sum_probs=227.8
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------ccccc-CCCCCeeeEEeccC----C---
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------PLHNI-PVPEPVAPLATTAD----G--- 95 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------~~~~~-~~~~~v~~~~~~~~----~--- 95 (387)
....+.+|..+|++++|+| ..+++++.||.|++|++.+++ ....+ .|...|.+++|+|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp EEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 3556789999999999998 234458899999999999887 34444 37789999999999 9
Q ss_pred CEEEEecCCCcEEEEeCCCCce-----eEEccCC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEeCCccccc
Q 035621 96 SYLFTGGLSGNVYAISVPKGDI-----LRSFSAH-----DKPVSCLKIS----PDGSL-LISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~~~~~ 160 (387)
++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+......
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 9999999999999999998887 8888888 5899999999 99999 999999999999999431000
Q ss_pred CCCCCCCCccceE-----ee-------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-------
Q 035621 161 HTDDKNPDDLMLQ-----KF-------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF------- 221 (387)
Q Consensus 161 ~~~~~~~~~~~~~-----~~-------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------- 221 (387)
.....+. .+ ..|...|.+++|+|+ + ++++++.|+.|++||+++++.+..+..
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 162 ------SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp ------HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred ------cccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 0022222 45 448899999999987 4 999999999999999999999988875
Q ss_pred CCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeeccc-------------ccccEEEEEEecCC
Q 035621 222 PCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANR-------------HDGVVVSVMMMNEG 285 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~ 285 (387)
...+.+++|+|++++|++++.| |.|++||+..... + ..+.. |...|.+++|+|++
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------I-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------E-EEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------c-ceeccCcccccccccccccCCcEEEEEECCCC
Confidence 7899999999999999999999 9999999987422 2 22234 89999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCccEEEEee------cc--------------cCCCceeEEEEecC
Q 035621 286 KNLVSAAEDGSVYIWEIEKRQVVMVLK------NE--------------LAGSISEMVIATGI 328 (387)
Q Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~~~~~~~~ 328 (387)
++|++++.||.|++||+.+++++..+. .| +...|+++.|++..
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 999999999999999999999999998 54 15588888887653
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-38 Score=279.27 Aligned_cols=283 Identities=14% Similarity=0.149 Sum_probs=229.0
Q ss_pred EeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEecc-CCCEE
Q 035621 23 YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTA-DGSYL 98 (387)
Q Consensus 23 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l 98 (387)
|+..+.+....+.+|...|.+++|+|++ ...+++++.||.|++||+.+++....+. |...|.+++|+| ++++|
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTH---PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSC---TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCC---CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence 3445566778889999999999999964 0234448999999999999888776654 778999999999 78999
Q ss_pred EEecCCCcEEEEeCCCCceeEEccC---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621 99 FTGGLSGNVYAISVPKGDILRSFSA---HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF 175 (387)
Q Consensus 99 ~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 175 (387)
++++.|+.|++||+++ +.+..+.. |...|.+++|+|++++|++++.|+.|++||+ ....+..+
T Consensus 135 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-------------~~~~~~~~ 200 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-------------DGHEIFKE 200 (383)
T ss_dssp EEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-------------TSCEEEEE
T ss_pred EEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-------------CCCEEEEe
Confidence 9999999999999985 55555544 3478999999999999999999999999998 34567888
Q ss_pred eccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC----CcEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEE
Q 035621 176 VAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKG 249 (387)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 249 (387)
..|...|.+++|+|++ . +|++++.|+.|++||+++ +..+..+.+...|.+++|+| ++++|++++.|+.|++|
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence 8999999999999985 5 999999999999999998 67888888999999999999 99999999999999999
Q ss_pred eccccccccccccceeE--------eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc-CCCce
Q 035621 250 LLKYQSRQQMHKGQELV--------TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL-AGSIS 320 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~ 320 (387)
|+++............. .........+..++|+|++++ +++.||.|++||+.+++++..+..+. .+.++
T Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~ 356 (383)
T 3ei3_B 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIIS 356 (383)
T ss_dssp ETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCC
T ss_pred ECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEE
Confidence 99875443221110000 000011245566778888877 88899999999999999999998753 55676
Q ss_pred eEEEEe
Q 035621 321 EMVIAT 326 (387)
Q Consensus 321 ~~~~~~ 326 (387)
.++|++
T Consensus 357 ~~~~s~ 362 (383)
T 3ei3_B 357 LNKFSP 362 (383)
T ss_dssp EEEECT
T ss_pred EEEEec
Confidence 667765
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.1e-39 Score=275.87 Aligned_cols=253 Identities=15% Similarity=0.167 Sum_probs=199.9
Q ss_pred eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC-CCCCeeeEEecc--CCCEEEEecCCCcE
Q 035621 33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP-VPEPVAPLATTA--DGSYLFTGGLSGNV 107 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i 107 (387)
.+.+|.++|++++|+|++. .+++++.|++|++||+.+++. +..+. |..+|.+++|++ ++++|++|+.|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~----~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGT----RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ------CCEEEEEECGGGC----EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred ecccccCeEEEeeEcCCCC----EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 4578999999999999654 455599999999999987743 34443 788999999986 48999999999999
Q ss_pred EEEeCCCC--ceeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 108 YAISVPKG--DILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 108 ~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
++||++++ +....+.+|...|++++|+|+ +.+|++++.|+.|++||+... ........+.+|...+.
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~---------~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE---------GQWEVKKINNAHTIGCN 154 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS---------SCEEECCBTTSSSSCBC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC---------CCcceeeeeccccCCcc
Confidence 99999887 456678899999999999997 789999999999999998421 01112344567889999
Q ss_pred EEEEeeCCC---------------CceEEEEeCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEeCCCC----CeEEEE
Q 035621 184 AITCCIGSF---------------NSIIISCSMDCTCKFWRLLNG---THLSTVT-FPCAIMGLALDPTE----TDFFAA 240 (387)
Q Consensus 184 ~~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~----~~l~~~ 240 (387)
+++|+|+.. +.+|++|+.|++|++||++.. +++..+. |...|.+++|+|++ .+|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 999988631 368999999999999999765 3445554 67889999999987 789999
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.|+.|++|++....... .....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 235 s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCeEEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999987632110 0111224688999999999999999999999999999976
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.1e-38 Score=265.83 Aligned_cols=242 Identities=14% Similarity=0.194 Sum_probs=199.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCC--CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSS--GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~ 77 (387)
++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.++|.+++|++.. ....+++++.|++|++||+.+++ .+
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 57999999999999999999999974 46788999999999999998631 12345569999999999998774 33
Q ss_pred cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCC-------------CCE
Q 035621 78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPD-------------GSL 139 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~-------------~~~ 139 (387)
..+. |...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++|+|+ +++
T Consensus 93 ~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 93 AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence 3333 6788999999997 88999999999999999987632 4567789999999999997 579
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCc---E
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGT---H 215 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~---~ 215 (387)
|++|+.|+.|++||++... ........+.+|...|.+++|+|++ .+.+|++++.|++|++||+++.. .
T Consensus 173 l~sgs~D~~v~lwd~~~~~--------~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244 (297)
T ss_dssp EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred EEEEcCCCcEEEEEEcCCC--------ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc
Confidence 9999999999999983210 1112456788999999999999974 24799999999999999998753 1
Q ss_pred EEEE---ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 216 LSTV---TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 216 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
...+ .+...+.+++|+|++++|++++.|+.|++|+...
T Consensus 245 ~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 2222 2567899999999999999999999999999864
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-37 Score=293.01 Aligned_cols=263 Identities=20% Similarity=0.274 Sum_probs=218.6
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc-----ccc-CCCCCeeeEEeccCCCEEEEecC
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL-----HNI-PVPEPVAPLATTADGSYLFTGGL 103 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~ 103 (387)
....+++|.+.|++++|+++. ...+++++.|++|++|++.+.... ..+ .|...|.+++|+|++++|++|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~---~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDN---ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTC---CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred hhhhcccCCceeEEEEecCCC---CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 345688999999999999842 234556999999999999765322 222 37789999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.... .........+|...|.
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---------KYTISEGGEGHRDWVS 521 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---------EEEECSSTTSCSSCEE
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---------ceeeccCCCCCCCcEE
Confidence 9999999999999999999999999999999999999999999999999983210 0001111246888999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 262 (387)
+++|+|+.....+++++.|++|++||+++++....+. |...|.+++|+|++++|++++.||.|++||+.++.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~------- 594 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK------- 594 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-------
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence 9999998655789999999999999999999888887 77899999999999999999999999999998743
Q ss_pred ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
.+..+ .+...|.+++|+|++.+|++++ |+.|++||+.+++++..+..+.
T Consensus 595 -~~~~~--~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 595 -KLYSL--EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp -EEECC--BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCC
T ss_pred -eEEEe--cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccc
Confidence 22222 3456799999999998887775 5669999999999998887553
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-38 Score=280.73 Aligned_cols=281 Identities=12% Similarity=0.132 Sum_probs=227.9
Q ss_pred ccccCCCcE-EEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCC-
Q 035621 2 LHHLPCNEV-ILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSS- 74 (387)
Q Consensus 2 l~~s~~~~~-l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~- 74 (387)
++++|+... +++++.||.|+||++... ..+..+.+|..+|.+++|+| +..+++ +++.||.|++||+.++
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~----s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA----SGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEE----EEETTSEEEEEECCTTC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEE----EEeCCCeEEEEEccCCC
Confidence 456777654 445789999999998654 23556788999999999999 655444 4899999999999887
Q ss_pred ------CcccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEc--cCCCCCeEEEEEcCCCCEEEEEe
Q 035621 75 ------TPLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSF--SAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 75 ------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
+++..+. |...|.+++|+|++ ++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3444444 77899999999998 69999999999999999999999998 78999999999999999999999
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCC-eEEEEEeeCCCCceEEEE---eCCCcEEEEeCCCCcE---E
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDS-VTAITCCIGSFNSIIISC---SMDCTCKFWRLLNGTH---L 216 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~---~ 216 (387)
.||.|++||+ .....+..+ ..|.+. +.++.|+|++ .+|++| +.|+.|++||+++++. .
T Consensus 196 ~d~~i~iwd~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 196 RDKRVRVIEP------------RKGTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp TTSEEEEEET------------TTTEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred cCCcEEEEeC------------CCCceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceE
Confidence 9999999999 455666777 678776 8999999874 888888 7899999999998764 3
Q ss_pred EEEecCCceeEEEeCCCCCeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 217 STVTFPCAIMGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
..+.+...+.+++|+|+++++++ ++.||.|++|++...... ...+.. . .|...|.+++|+|++.++++ .++
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----~~~l~~-~-~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----LHYLSM-F-SSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----EEEEEE-E-CCSSCCSEEEECCGGGSCGG--GTE
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----eEeecc-c-ccCCcccceEEeccccccee--cce
Confidence 33346788999999999999975 557999999999874310 001111 1 25689999999999998875 466
Q ss_pred cEEEEECCCccEE
Q 035621 296 SVYIWEIEKRQVV 308 (387)
Q Consensus 296 ~i~iwd~~~~~~~ 308 (387)
.+++|++.++++.
T Consensus 334 ~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 334 IARFYKLHERKCE 346 (402)
T ss_dssp EEEEEEEETTEEE
T ss_pred eEEEEEcCCCcEE
Confidence 9999999987653
No 79
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-38 Score=272.11 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=198.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~ 77 (387)
++|+|+|++||+|+.|++|+|||+.++. .+..+.+|..+|.+++|++.. ....+++++.|++|++||+++++ ..
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEEEECCCCcceEE
Confidence 5799999999999999999999998774 467889999999999997521 12345568999999999998874 33
Q ss_pred cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCce---eEEccCCCCCeEEEEEcCC---------------
Q 035621 78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDI---LRSFSAHDKPVSCLKISPD--------------- 136 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~--------------- 136 (387)
..+. |...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 3333 7789999999997 78999999999999999987632 3456789999999999997
Q ss_pred --CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCC
Q 035621 137 --GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 137 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~ 212 (387)
+++|++|+.|+.|++||+... ........+.+|...|.+++|+|+. ++.+|++++.|++|++||+.+
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~---------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEED---------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTT---------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccceEEEecCCCeEEEEEeCCC---------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 468999999999999998321 1123566788999999999999974 237899999999999999876
Q ss_pred Cc----EEEE-EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 213 GT----HLST-VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 213 ~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
.. .... ..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 31 1122 23678999999999999999999999999999764
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-37 Score=269.79 Aligned_cols=270 Identities=14% Similarity=0.106 Sum_probs=226.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCcc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~ 77 (387)
++|+|++++|++|+.||.|++||+.+++ ....+.+|..+|.+++|+|++.. .+++++.||.|++||+ .+++..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~ 93 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL---QIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE---EEEEEETTSCEEEECSSSSSSEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc---EEEEEcCCCeEEEEEeccCCceE
Confidence 5799999999999999999999998877 34555689999999999996440 3445889999999999 888775
Q ss_pred cccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC---------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621 78 HNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK---------GDILRSFSAHDKPVSCLKISPDGSLLISGGDD 146 (387)
Q Consensus 78 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 146 (387)
.... |...|.+++|+| ++++++++.|+.|++||+++ ++++..+. |...|.+++|+|++ +++++.|
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEEST
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCC
Confidence 5556 888999999999 99999999999999999987 77777776 88999999999887 9999999
Q ss_pred CcEEEEeCCc-ccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeCCCC------cEEEE
Q 035621 147 GVIATVPIFQ-LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRLLNG------THLST 218 (387)
Q Consensus 147 g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~ 218 (387)
+.|++||++. . ..........|...+.+++|+| ++ +++++++.||.|++|++... +....
T Consensus 170 ~~i~i~d~~~~~----------~~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 170 SQVQWFRLPLCE----------DDNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp TEEEEEESSCCT----------TCCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CeEEEEECCccc----------cccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 9999999943 1 1123334557888999999998 74 89999999999999999887 66777
Q ss_pred Ee-cCC---------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCE
Q 035621 219 VT-FPC---------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKN 287 (387)
Q Consensus 219 ~~-~~~---------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 287 (387)
+. +.. .|.+++|+|++++|++++.||.|++||+.+. .. ...+..| ...|.+++ |++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~-~~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KK-IKNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EE-EEECCCCSSSEEEEEE--ECSSE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--------hH-hhhhhcccCCCceEec--CCCCe
Confidence 76 333 8999999999999999999999999999873 22 2334466 99999999 99999
Q ss_pred EEEEeCCCc-EEEEE
Q 035621 288 LVSAAEDGS-VYIWE 301 (387)
Q Consensus 288 l~s~~~dg~-i~iwd 301 (387)
|++++.||. .+.|.
T Consensus 307 l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 307 LCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEECTHHHHCSS
T ss_pred EEEEecCCccccccc
Confidence 999999998 55544
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.2e-37 Score=275.25 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=232.7
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP 85 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~ 85 (387)
++++|++|+.||.|++||+.+++.+..+.+|...|.++.++++. +++++.||.|++||+.+++.+..+. +...
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR------VVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE------EEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCE------EEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 46799999999999999999999999999999999999997643 4457899999999999998887765 6788
Q ss_pred eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+.+++| +++++++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++.||.|++||+
T Consensus 242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~----------- 306 (445)
T 2ovr_B 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV----------- 306 (445)
T ss_dssp EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET-----------
T ss_pred EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC-----------
Confidence 999999 7889999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEc
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 241 (387)
.....+..+.+|...+.++.+. ++++++++.||.|++||+++++.+..+. +...|.+++|+ ++++++++
T Consensus 307 -~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 379 (445)
T 2ovr_B 307 -ETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS 379 (445)
T ss_dssp -TTCCEEEEECCCCSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE
T ss_pred -CCCCEEEEEcCCcccEEEEEEe----CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe
Confidence 5667788889999999988764 3699999999999999999999999887 56789999996 57999999
Q ss_pred cCCcEEEEeccccccccccccceeEee----cccccccEEEEEEecCCCEEEEEeCCCc----EEEEECCCc
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTL----ANRHDGVVVSVMMMNEGKNLVSAAEDGS----VYIWEIEKR 305 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~iwd~~~~ 305 (387)
.||.|++||+.++.. +..+ ...|.+.|++++|+|++.++++|+.||+ |.+||++..
T Consensus 380 ~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEF--------IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTSEEEEEETTTCCE--------EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCeEEEEECCCCce--------eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999987432 2222 1468889999999999999999999998 999998753
No 82
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=270.96 Aligned_cols=266 Identities=13% Similarity=0.166 Sum_probs=216.0
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccC-CCCCeeeEEeccC--CCEEEEec
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIP-VPEPVAPLATTAD--GSYLFTGG 102 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~ 102 (387)
|+.+..+.+|..+|++++|+|++.+ +++++.||.|++||+. +++....+. |...|.+++|+++ +++|++++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKR----LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCE----EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 3556778899999999999996544 4458899999999998 445555554 7789999999987 99999999
Q ss_pred CCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc
Q 035621 103 LSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH 178 (387)
Q Consensus 103 ~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (387)
.||.|++||+.+++ .+..+..|...|.+++|+|+ ++++++++.|+.|++||+.. ........+..|
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~ 146 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE----------NGTTSPIIIDAH 146 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT----------TSCCCEEEEECC
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC----------CCceeeEEecCC
Confidence 99999999999887 67778889999999999999 99999999999999999943 122345567789
Q ss_pred CCCeEEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCcE----EEEEe-cCCceeEEEeCCC---CCeEEE
Q 035621 179 NDSVTAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGTH----LSTVT-FPCAIMGLALDPT---ETDFFA 239 (387)
Q Consensus 179 ~~~i~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~-~~~~v~~~~~~~~---~~~l~~ 239 (387)
...|.+++|+|.. ++.++++++.|+.|++||++++.. ...+. |...|.+++|+|+ +++|++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999999941 258999999999999999987653 33444 6788999999999 899999
Q ss_pred EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
++.||.|++||+....... .........|...|++++|+|++++|++++.||.|++|++..+.....+
T Consensus 227 ~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 294 (379)
T ss_dssp EETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEE
T ss_pred EeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccc
Confidence 9999999999998743110 1111122358889999999999999999999999999999865544333
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=265.96 Aligned_cols=273 Identities=13% Similarity=0.154 Sum_probs=221.7
Q ss_pred EeccCCCCCceeEEEcCcc-ceeeeccccCCC---CCeEEEEEccCCCccc--ccCCCCCeeeEEeccC---CCEEEEec
Q 035621 32 AHFSGSRSPRRGLTFAGKP-FIAASHISPTTG---SGSVHLYNLWSSTPLH--NIPVPEPVAPLATTAD---GSYLFTGG 102 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~---d~~v~vw~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~ 102 (387)
..+.+|..+|.+++|+|+. .+. ++++. |+.|++||+.+++... ...+..+|.+++|+|+ +++|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~----~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFV----TMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEE----EEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEE----EecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 3457799999999999965 332 23555 9999999999887643 3457889999999998 69999999
Q ss_pred CCCcEEEEeCCCCc-eeEEccCCCCCeEEEE------EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc-ceEe
Q 035621 103 LSGNVYAISVPKGD-ILRSFSAHDKPVSCLK------ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL-MLQK 174 (387)
Q Consensus 103 ~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~ 174 (387)
.||.|++||+.+++ .+..+.+|...|.++. |+|++++|++++.||.|++||+. ... ....
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~------------~~~~~~~~ 155 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR------------QKDDPVAN 155 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT------------SCSSCSEE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC------------CCCCccee
Confidence 99999999999988 8888999999999995 47899999999999999999994 222 4555
Q ss_pred eeccCC----CeEEEEE----eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC---CCCeEEEEccC
Q 035621 175 FVAHND----SVTAITC----CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP---TETDFFAAGSD 243 (387)
Q Consensus 175 ~~~~~~----~i~~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d 243 (387)
+..|.+ .+.++++ +|+ ++++++++.|+.|++||+++++......+...+.+++|+| ++.++++++.|
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQE--ERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-C--CCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred ccccCCCCCCceEEEEEEeccCCC--CCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 655544 7888884 455 5899999999999999999999888878899999999999 99999999999
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCc-----------------
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKR----------------- 305 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~----------------- 305 (387)
|.|++||++........ .......|...|++++|+|+++ +|++++.||.|++||+.++
T Consensus 234 g~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGF----ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp TEEEEEEEEEEETTTEE----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred CeEEEEeCcCCCcccce----eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 99999999875432211 1112347999999999999998 8999999999999999864
Q ss_pred --cEEEEeecccCCCceeEEEEec
Q 035621 306 --QVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 306 --~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+++..+..| .+.|+++.|++.
T Consensus 310 ~~~~~~~~~~~-~~~v~~~~~s~~ 332 (357)
T 3i2n_A 310 SVSLLQNVTLS-TQPISSLDWSPD 332 (357)
T ss_dssp EEEEEEEEECC-SSCEEEEEECSS
T ss_pred ccceeeccccC-CCCeeEEEEcCC
Confidence 456666666 457888877653
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=261.05 Aligned_cols=279 Identities=13% Similarity=0.173 Sum_probs=235.9
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
....+.+|..+|++++|+|++.+ +++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDL----LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCE----EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCE----EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 34567899999999999996544 4458899999999999999888887 778999999999999999999999999
Q ss_pred EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCC--C
Q 035621 109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--S 181 (387)
Q Consensus 109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 181 (387)
+||+.+++.+..+. +...+.+++|+|+++++++++.+ +.|++||+.......... .........+..|.. .
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-KVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-EECSSCSEEEECCTTCCC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec-ccccceeeeccCCcCccc
Confidence 99999999998887 88999999999999999999999 999999995432111000 011234455666766 9
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
+.+++|+|++ ++|++++.||.|++||+++ .+.+..+. +...|.+++|+|++++|++++.|+.|++||+...
T Consensus 178 ~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----- 250 (369)
T 3zwl_B 178 ATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL----- 250 (369)
T ss_dssp EEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----
T ss_pred eeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-----
Confidence 9999999975 8999999999999999998 67777777 6789999999999999999999999999999873
Q ss_pred cccceeEeecccccccEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG--------------SVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
.....+ .+...+..++|+|+++++++++.++ .+++||+.+++.+..+..|. +.|+++.|+
T Consensus 251 ---~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s 324 (369)
T 3zwl_B 251 ---QVLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF-GPLNTVAIS 324 (369)
T ss_dssp ---CEEEEE--ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS-SCEEEEEEC
T ss_pred ---ceeeee--cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc-CcEEEEEEC
Confidence 222222 3778899999999999999999988 89999999999999998874 589999887
Q ss_pred ec
Q 035621 326 TG 327 (387)
Q Consensus 326 ~~ 327 (387)
+.
T Consensus 325 ~~ 326 (369)
T 3zwl_B 325 PQ 326 (369)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-38 Score=280.28 Aligned_cols=277 Identities=12% Similarity=0.105 Sum_probs=207.8
Q ss_pred eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc---CCCCCeeeEEecc-CCCEEEEecCCC
Q 035621 30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI---PVPEPVAPLATTA-DGSYLFTGGLSG 105 (387)
Q Consensus 30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~dg 105 (387)
......+|...|++|+|+|.. ...+++|+.||.|+|||+.+++....+ .|.+.|++++|+| ++++|++|+.||
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~---~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTH---PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSC---TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ecccCCCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 344556788899999999831 123455999999999999877654433 3778999999998 689999999999
Q ss_pred cEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 106 NVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
+|++||++++....... .+...+.+++|+|++++|++|+.||.|++||+. ...+..+.+|...|.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-------------~~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-------------GKELWNLRMHKKKVT 254 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-------------SCBCCCSBCCSSCEE
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-------------cceeEEEecccceEE
Confidence 99999997765433333 334567899999999999999999999999982 345667789999999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE----ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV----TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
+++|+|++ ..++++++.|+.|++||+++.+....+ .|...|.+++|+|++++|++++.||.|++||+........
T Consensus 255 ~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 255 HVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp EEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred eeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence 99999986 468999999999999999887644333 3678999999999999999999999999999987543221
Q ss_pred cccceeEeecccccccEEEEEEecCCCEEEEEe------------CCCcEEEEECCCccEEEEeecccCCCceeE-EEEe
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA------------EDGSVYIWEIEKRQVVMVLKNELAGSISEM-VIAT 326 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~ 326 (387)
....... ......+....|+|++.++++++ .++.|++||..+++++..+..++...|.++ +|++
T Consensus 334 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 334 LIPHPHR---HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp ECCCCCC---CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred Eeccccc---ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 1100000 00011223345555555555443 346899999999999999876666677776 4543
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-36 Score=273.53 Aligned_cols=269 Identities=12% Similarity=0.155 Sum_probs=227.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc--
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-- 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-- 79 (387)
++|+|++ +|++|+.||+|++||+.+++.+..+.+|..+|.+++|++.. ....+++++.|+.|++||+.++.....
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 5688888 99999999999999999999999999999999999998521 223455589999999999987754321
Q ss_pred ---------------------c-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621 80 ---------------------I-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 80 ---------------------~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (387)
+ .+...+.++ +++++++++|+.||.|++||+++++++..+.+|...|.+++|+|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 1 134455554 6788999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS 217 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 217 (387)
+++++++.||.|++||+ .....+..+.+|...|.+++++ +.++++++.||.|++||+.++....
T Consensus 323 ~~l~sg~~dg~i~vwd~------------~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDL------------ENGELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp TEEEEEETTSCEEEEET------------TTTEEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCcEEEEEC------------CCCcEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999999999 5677888999999999999986 3799999999999999999999888
Q ss_pred EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621 218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
...+...+..++|+|+++++++++ ||.|++||+.++ ..+......|...|.+++|+ +..++++++.||.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g--------~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG--------KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC--------CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC--------cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 888888899999999999999988 899999999983 34444455789999999997 34455566677765
Q ss_pred EEEE
Q 035621 298 YIWE 301 (387)
Q Consensus 298 ~iwd 301 (387)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.6e-37 Score=294.65 Aligned_cols=274 Identities=20% Similarity=0.201 Sum_probs=239.1
Q ss_pred ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
+..+.+.+|.+.|.+++|+|++.+. ++++.||.|++||+.+++.+..+. |..+|.+++|+|++++|++++.||.|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~l----a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWV----LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEE----EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred ccceeeecCCCceEEEEECCCCCEE----EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 4566788999999999999965544 448899999999999998887776 77899999999999999999999999
Q ss_pred EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621 108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (387)
++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.. .......+..|...|.+++|
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-----------~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-----------NWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG-----------TSEEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC-----------CceEEEEEcCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999932 23566778899999999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCC--CCCeEEEEccCCcEEEEeccccccccccccc
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDP--TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
+|.. +..+++++.||.|++||+.++.....+. +...+.+++|+| ++.++++++.||.|++||+...
T Consensus 149 ~p~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------- 218 (814)
T 3mkq_A 149 NPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (814)
T ss_dssp ETTE-EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---------
T ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------
Confidence 9831 4899999999999999999888777776 337899999999 9999999999999999999863
Q ss_pred eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
.....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+. ..+.++.+++..
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~ 282 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTG 282 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-SSEEEEEECTTC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-CcEEEEEEccCC
Confidence 2233345789999999999999999999999999999999999999998764 477777765543
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-37 Score=272.88 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=224.7
Q ss_pred ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCCCeeeEEeccC----CCEEEEecC
Q 035621 34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPEPVAPLATTAD----GSYLFTGGL 103 (387)
Q Consensus 34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~~v~~~~~~~~----~~~l~~~~~ 103 (387)
..+|..+|.+++|+|...-....+++++.++.|++||+.+++.+..+. +...|.+++|+|+ +.+|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 458999999999998310001122235667799999999887765554 5578999999998 679999999
Q ss_pred CCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee---eccC
Q 035621 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF---VAHN 179 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~ 179 (387)
||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+ .....+..+ ..|.
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------------QTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET------------TTTEEEEEECSTTSCS
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe------------ecCeEEEEeccccccc
Confidence 99999999999999999999999999999999 8999999999999999999 455566666 6899
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----------------------------cCCceeEEEe
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----------------------------FPCAIMGLAL 230 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~ 230 (387)
..|.+++|+|++ .+|++++.||.|++||+++++....+. +...|.+++|
T Consensus 162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 999999999975 899999999999999999875443222 6788999999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccc-----cccceeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~ 303 (387)
+ ++++++++.|+.|++||+........ .........+..|...|++++|+|+ +++|++|+.||.|++||+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8 77999999999999999987543111 0111334445678899999999999 9999999999999999999
Q ss_pred CccE----EEEeeccc-CCCceeEEEEe
Q 035621 304 KRQV----VMVLKNEL-AGSISEMVIAT 326 (387)
Q Consensus 304 ~~~~----~~~~~~~~-~~~v~~~~~~~ 326 (387)
++++ ...+..|. ...|+++.|++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred CCCCccccceEEcccccCCceEEEEeCC
Confidence 9764 34666653 56899998876
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=258.04 Aligned_cols=265 Identities=20% Similarity=0.230 Sum_probs=224.4
Q ss_pred CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
.+....+.+|.++|++++| ++.. .+++++.||.|++||+.+++....+. +...|.+++|+|++++|++++.||.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 3678889999999999999 7433 34558999999999998887666555 6789999999999999999999999
Q ss_pred EEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 107 VYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 107 i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
|++|++... +.+..+..|...|.+++| +++++++++.||.|++||. ......+..|...+.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--------------~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--------------GSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------------TEEEEEEECCSSCEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------------CcEEEecccCCCcee
Confidence 999998654 557778899999999999 5779999999999999984 235667788999999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 261 (387)
++.+.|.. ++++++++.|+.|++|| ..+....+. +...+.+++|+|++. +++++.||.|++||++...
T Consensus 147 ~~~~~~~~-~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~------ 216 (313)
T 3odt_A 147 DAKVVSFS-ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD------ 216 (313)
T ss_dssp EEEEEETT-TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC------
T ss_pred EEEEccCC-CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh------
Confidence 99999832 48999999999999999 445555555 678999999999998 9999999999999998732
Q ss_pred cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
....+..|...|++++|+|++ .|++++.||.|++||+.+++++..+..+. ..|+++.|++..
T Consensus 217 ---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~ 278 (313)
T 3odt_A 217 ---VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA-ISIWSVDCMSNG 278 (313)
T ss_dssp ---EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS-SCEEEEEECTTS
T ss_pred ---hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC-ceEEEEEEccCC
Confidence 223345799999999999999 68999999999999999999999998774 488888887654
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-36 Score=263.26 Aligned_cols=277 Identities=14% Similarity=0.155 Sum_probs=214.4
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccccc-CCCCCeeeEEecc--CCCEEEEecCC
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNI-PVPEPVAPLATTA--DGSYLFTGGLS 104 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d 104 (387)
..+.+|.++|++++|+|++.+ +++++.||.|++||+.++. ....+ .|...|.+++|+| ++++|++++.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRH----VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSE----EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccCcccccceeEEEEcCCCCE----EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 346789999999999996544 4458999999999998764 33333 3778999999999 69999999999
Q ss_pred CcEEEEeCCCC---------ceeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCC-Cccce
Q 035621 105 GNVYAISVPKG---------DILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNP-DDLML 172 (387)
Q Consensus 105 g~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~ 172 (387)
|.|++||++++ +.+..+..|...|.+++|+|+ ++++++++.||.|++||++............ .....
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999887 557788899999999999999 9999999999999999995432111000000 00000
Q ss_pred EeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEeCCCC----CeEEEEccCC
Q 035621 173 QKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTH--LSTVT-FPCAIMGLALDPTE----TDFFAAGSDG 244 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~----~~l~~~~~dg 244 (387)
.....|...+.+++|+|+. ++.++++++.|+.+.+|+...++. +..+. |...|.+++|+|++ ++|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 0112577899999999861 248999999999998888887765 44444 67899999999998 8999999999
Q ss_pred cEEEEecccccccccc-------------------------------------ccceeEeecccccccEEEEEEecCCCE
Q 035621 245 LIYKGLLKYQSRQQMH-------------------------------------KGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 245 ~i~i~d~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
.|++||++........ ........+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999874211100 011334445689999999999999999
Q ss_pred EEEEeCCCcEEEEECCCccEEEEee
Q 035621 288 LVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
|++++.||.|++|++.+++.+..+.
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEecCCCcEEEEecCcCcchhhee
Confidence 9999999999999999887665554
No 91
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-37 Score=272.50 Aligned_cols=250 Identities=11% Similarity=0.088 Sum_probs=199.1
Q ss_pred ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
++.+..+|++++|+|++. .+++++.|+.|++||+.++ +....+. |...|.+++|+|++++|++++.|+.|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT----EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEECSSCCSCCEECSSSS----EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred EecCCCcEEEEEECCCCC----EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 344677899999999654 4455889999999999988 5666665 67899999999999999999999999999
Q ss_pred eCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEE
Q 035621 111 SVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAIT 186 (387)
Q Consensus 111 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 186 (387)
|+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+... ........+.. |...|.+++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE---------NDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------------CCCCEEECSSCCSCEEEEE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc---------ccceeeeEeecccCCCeEEEE
Confidence 998877 67778889999999999999999999999999999999431 11113566666 999999999
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCC------------------CcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLN------------------GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 248 (387)
|+|++ ++|++++.|+.|++||+.. ++++..+.+...|.+++|+|++++|++++.||.|++
T Consensus 154 ~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 99975 8999999999999999852 445555567788999999999999999999999999
Q ss_pred EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
||+...... ......+..|...|.+++|+|++++|++|+.|+.+ +|+...
T Consensus 232 wd~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 232 AYPSAPEQP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CEECSTTSC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EECCCCCCc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999874321 11123345789999999999999999999766655 676653
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=273.40 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=205.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|++ .++.+.+|+.+ +.....+.
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~-~~~~~~~~ 83 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-----------FENKLDFELAQ-QNGLLNSQ 83 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-----------CCCTTTTSCCC-SSCSSTTS
T ss_pred EEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-----------CcceEEEEeCC-CceEeecC
Confidence 68999999999999999999 755554 457999999999999953 34444444432 22344445
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK-----PVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
+...|.+++|+|+|++||+++.||.|++||... ++..+. |.. .+.+++|+|||++|++|+.||+|++||+..
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 678899999999999999999999999999544 666677 665 499999999999999999999999999932
Q ss_pred ccccCCCCCCCCccceEee----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEe--cCCceeE
Q 035621 157 LVDEHTDDKNPDDLMLQKF----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVT--FPCAIMG 227 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~ 227 (387)
.... .+.-..+..+ .+|...|.+++|+|+ + +++++.|++|++||+..+.. ..++. +...|.+
T Consensus 161 ~~l~-----~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 161 NSEN-----TPEFYFESSIRLSDAGSKDWVTHIVWYED--V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp CTTT-----CCCCEEEEEEECSCTTCCCCEEEEEEETT--E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred Cccc-----cccceeeeeeecccccccccEEEEEEcCC--c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 1000 0000134555 567789999999987 3 88899999999999988773 34553 5578999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE--ecCCCEEEEEeCCCcEEEEECC
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM--MNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
++|+ |+.|++++ ++.|++||+... .......+|...|..++| +|++..|+++++||+ ++|..+
T Consensus 232 vaFs--g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV--DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE--TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE--CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999 68888887 699999999862 222223379999999999 999999999999999 999875
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-36 Score=262.69 Aligned_cols=275 Identities=13% Similarity=0.159 Sum_probs=218.9
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----cccccCCCCCeeeEEeccCCC-EEEEecCCCc
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNIPVPEPVAPLATTADGS-YLFTGGLSGN 106 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~ 106 (387)
....+|.+.|.+++|+|++.+ +++++.|+.|++|++.+++ ......+...|.+++|+|+++ +|++|+.||.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~----l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSL----LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTE----EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred ecccCCCCcEEEEEEcCCCCE----EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 345689999999999996543 4458899999999999887 555556889999999999999 9999999999
Q ss_pred EEEEeC-CCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621 107 VYAISV-PKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183 (387)
Q Consensus 107 i~i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (387)
|++||+ .+++. ..+.. |...|.+++|+| ++++++++.|+.|++||++....... .....++..+. |...+.
T Consensus 81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI---AVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE---EEEESCSSSSS-SCCCEE
T ss_pred EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc---cccCCeeeEEe-eCCceE
Confidence 999999 77765 67778 999999999999 99999999999999999843100000 00023333444 888999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEE---EEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEecccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHL---STVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQ 258 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 258 (387)
+++|+++ . +++++.|+.|++||+++ +... ....+...+.+++|+| +++++++++.||.|++|++.......
T Consensus 155 ~~~~~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 155 TMDTNSS---R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEECSS---E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred EEEecCC---c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 9999866 2 99999999999999998 5432 2223678899999999 99999999999999999998741000
Q ss_pred ccccceeEeecccc---------cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621 259 MHKGQELVTLANRH---------DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMV 323 (387)
Q Consensus 259 ~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 323 (387)
. ......+..| ...|.+++|+|++++|++++.||.|++||+.+++++..+..|+.+.|+++.
T Consensus 231 ~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 231 N---SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp T---CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred c---cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 0 0111112234 449999999999999999999999999999999999999987566888887
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=266.92 Aligned_cols=276 Identities=10% Similarity=0.081 Sum_probs=223.2
Q ss_pred ccccCC---CcEEEeeCCCCcEEEEeCCC-Ccee-EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPC---NEVILTSSPEGPITAYNPSS-GAIL-AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~---~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|..+|.+++|+|++.+ +++++.||.|++||+.+++.
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK----VFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTEE
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE----EEEEcCCCcEEEEEcCCCCc
Confidence 579999 69999999999999999987 5554 778899999999999996544 44589999999999999998
Q ss_pred ccccCCCCCeeeEEe--ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 77 LHNIPVPEPVAPLAT--TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
.....|...|.+++| +|++++|++++.||.|++||+++++.+..+..+. .+.++.+.+ ..+++++.++.+++|++
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 121 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQL 197 (368)
T ss_dssp EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEEC
T ss_pred eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEe
Confidence 888889999999999 8999999999999999999999999988887654 566666654 57899999999999999
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC--CceEEEEeCCCcEEEEeCCCC---cEEEEEecCC------
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF--NSIIISCSMDCTCKFWRLLNG---THLSTVTFPC------ 223 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~------ 223 (387)
... ..........+...+.++.+.+... ...+++++.|+.|++||++.. ..+..+..+.
T Consensus 198 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 198 ENQ----------PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp SSS----------CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred ccc----------cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 431 1111122223445666777766542 234999999999999999987 4555555332
Q ss_pred -------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 224 -------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 224 -------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
.|.+++|+|++++|++++.||.|++||+.+. .....+..|...|.+++|+|++++|++++.|+.
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 6999999999999999999999999999873 233344578999999999999999999999886
Q ss_pred EEEEECC
Q 035621 297 VYIWEIE 303 (387)
Q Consensus 297 i~iwd~~ 303 (387)
.+.|++.
T Consensus 339 ~~~~~~~ 345 (368)
T 3mmy_A 339 SKGHEFY 345 (368)
T ss_dssp TTCGGGC
T ss_pred ccccccc
Confidence 5555543
No 95
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-35 Score=260.54 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=206.5
Q ss_pred ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
+..|..+|.+++|+|++.+. ++++.|+.|++||+.+++ .+..+. |...|.+++|+|++++|++++.||.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l----~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQI----AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTTSSEE----EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCCCCEE----EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 34588999999999965544 448899999999999886 666664 77899999999999999999999999999
Q ss_pred eCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCc-cceEeeeccCCCeEEEEE
Q 035621 111 SVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDD-LMLQKFVAHNDSVTAITC 187 (387)
Q Consensus 111 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 187 (387)
|+++++.... +..|...|.+++|+|++++|++++.|+.|++||+... ... ........|...|.+++|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---------~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE---------NDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT---------TTEEEEEEECTTCCSCEEEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC---------CcceeeeeeecccCCCeeEEEE
Confidence 9988875443 4678999999999999999999999999999999321 001 122233568899999999
Q ss_pred eeCCCCceEEEEeCCCcEEEEeCC------------------CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621 188 CIGSFNSIIISCSMDCTCKFWRLL------------------NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 188 ~~~~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 248 (387)
+|++ ++|++++.|+.|++||++ .++.+..+. +...+.+++|+|++++|++++.|+.|++
T Consensus 151 ~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 151 HPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp CTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred cCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9975 899999999999999953 677777775 6788999999999999999999999999
Q ss_pred EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
||++... . ...+..|..+|.+++|+|++++|++| .|+.|++|++.+
T Consensus 229 ~d~~~~~--------~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 229 ADADKKM--------A-VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEGGGTT--------E-EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EECCCCc--------e-eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9998732 2 22334788899999999999988887 899999999988
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=268.16 Aligned_cols=277 Identities=15% Similarity=0.150 Sum_probs=222.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc---eeEeccC------------------------------------------
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA---ILAHFSG------------------------------------------ 36 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------------ 36 (387)
++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 10 v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (450)
T 2vdu_B 10 LLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA 88 (450)
T ss_dssp EEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred EEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence 5799999977766 46899999999998 6655543
Q ss_pred ------------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCccccc---CCCCCeeeEEeccCCCEEE
Q 035621 37 ------------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNI---PVPEPVAPLATTADGSYLF 99 (387)
Q Consensus 37 ------------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 99 (387)
|...|.+++|+|++..+ +++++.||.|++||+. +++.+..+ .+...|.+++|+|++++|+
T Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l---~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 89 AKVPSPGLGAPPIYSYIRNLRLTSDESRL---IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp -----------CCCCCEEEEEECTTSSEE---EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccccCCCCCCCccCCceEEEEEcCCCCEE---EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 33369999999965442 1348899999999998 78777776 4668899999999999999
Q ss_pred EecCCCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621 100 TGGLSGNVYAISVPKGDILR----SFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 100 ~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
+|+.+|.+++|++.+++... .+.+|...|++++|+|+ +++|++++.|+.|++||+ .....+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~------------~~~~~~ 233 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY------------PQCFIV 233 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE------------SCTTCE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC------------CCCcee
Confidence 99999999999998877554 77789999999999999 999999999999999999 444555
Q ss_pred Ee-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--------------------------CCce
Q 035621 173 QK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--------------------------PCAI 225 (387)
Q Consensus 173 ~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~v 225 (387)
.. +.+|...|.+++|+ + +.+|++++.|+.|++||+.+++++..+.. ...+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-K--DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp EEECCCCSSCEEEEEEC-S--TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eeeecCCCCceEEEEEC-C--CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55 55899999999999 5 59999999999999999999998888752 2468
Q ss_pred eEEEeCCCCCeEEEEc-cCCcEEEEec--cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC------CCc
Q 035621 226 MGLALDPTETDFFAAG-SDGLIYKGLL--KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE------DGS 296 (387)
Q Consensus 226 ~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~ 296 (387)
.+++|+|+++++++++ .++.|++|++ ..... ......+..| ..|.+++|+|++.++++++. +..
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~ 383 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD------LALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNF 383 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC------EEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCS
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc------eeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcc
Confidence 8999999999999998 8999999999 33110 1222333355 78999999996544444443 556
Q ss_pred EEEEECCC
Q 035621 297 VYIWEIEK 304 (387)
Q Consensus 297 i~iwd~~~ 304 (387)
|.+|.+..
T Consensus 384 i~v~~~~~ 391 (450)
T 2vdu_B 384 AKFIEYNL 391 (450)
T ss_dssp EEEEEEET
T ss_pred eEEEEEEc
Confidence 88887653
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=262.50 Aligned_cols=265 Identities=10% Similarity=0.053 Sum_probs=211.0
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc---------C
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW---------S 73 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~---------~ 73 (387)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+.. +
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-------EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-------eEEecCCCeEEEEEccCceEEeecCC
Confidence 355788999999999999999999999888876 466888889885 5568999999999765 4
Q ss_pred CCcccccC--CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 74 STPLHNIP--VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 74 ~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
++.+..+. +.++|.+++|+| +++++++++.||.|++||+++++...... .|...+++++|+|++.+|++|+.||.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 44333333 557899999999 99999999999999999999999876664 45568999999999999999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccce-Eeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cC
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLML-QKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FP 222 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~ 222 (387)
|++||++ ..... ..+.. |..+|.+++|+|++ .+|++++ |+.|++||+++++.+..+. +.
T Consensus 194 i~iwd~~------------~~~~~~~~~~~~h~~~v~~l~fs~~g--~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 194 LDVYNLS------------SPDQASSRFPVDEEAKIKEVKFADNG--YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE 258 (343)
T ss_dssp EEEEESS------------CTTSCCEECCCCTTSCEEEEEECTTS--SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred EEEEECC------------CCCCCccEEeccCCCCEEEEEEeCCC--CEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence 9999993 44444 56677 99999999999985 8999999 5599999999987654443 11
Q ss_pred Cce--eEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEec---CCCEEEEEeCCCc
Q 035621 223 CAI--MGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN---EGKNLVSAAEDGS 296 (387)
Q Consensus 223 ~~v--~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~ 296 (387)
..+ .+++|+|++++|++++. |+.+++|++...... .. ..++..++|.+ +...+++++.||.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~ 325 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--------WT-----KDEESALCLQSDTADFTDMDVVCGDGG 325 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--------EE-----EEEEEECCC----CCCCEEEEEEETTE
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--------eE-----ecCceeEecCccccccceeEEEecCCc
Confidence 223 46999999999999988 999999999763211 10 15677888888 8889999999999
Q ss_pred EEEEECCC
Q 035621 297 VYIWEIEK 304 (387)
Q Consensus 297 i~iwd~~~ 304 (387)
+.++-...
T Consensus 326 ~~~~~~~~ 333 (343)
T 3lrv_A 326 IAAILKTN 333 (343)
T ss_dssp EEEEEECS
T ss_pred eEEEEecC
Confidence 99886443
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.4e-35 Score=259.14 Aligned_cols=265 Identities=15% Similarity=0.124 Sum_probs=216.9
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCC
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 113 (387)
....++++|+.. ..+++++.||.|++|++.... ....+ .|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 36 ~~~~~~~~~~~~---~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFM---ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEE---EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeE---EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 355678888532 344558899999999996542 22223 3778999999999 99999999999999999998
Q ss_pred CC-------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeE
Q 035621 114 KG-------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVT 183 (387)
Q Consensus 114 ~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~ 183 (387)
++ +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+ .....+..+ ..|...|.
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV------------GTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET------------TTTEEEEEECTTTCCSCEE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC------------CCCCccEEEecCCCCCceE
Confidence 87 5678888999999999999998 69999999999999999 556677777 78999999
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-e-cCCc-eeEEEeCCCCCeEEEE---ccCCcEEEEeccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-T-FPCA-IMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~ 257 (387)
+++|+|++ .+|++++.|+.|++||+++++.+..+ . +... +.+++|+|++.++++| +.|+.|++||++....
T Consensus 181 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~- 257 (402)
T 2aq5_A 181 SVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE- 257 (402)
T ss_dssp EEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-
T ss_pred EEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-
Confidence 99999974 89999999999999999999999888 3 4443 8999999999999999 7899999999987432
Q ss_pred cccccceeEeecccccccEEEEEEecCCCEEE-EEeCCCcEEEEECCCccE-EEEeecc-cCCCceeEEEEecC
Q 035621 258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAEDGSVYIWEIEKRQV-VMVLKNE-LAGSISEMVIATGI 328 (387)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~v~~~~~~~~~ 328 (387)
........|...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..+ +...+.+++|++..
T Consensus 258 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~ 325 (402)
T 2aq5_A 258 ------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR 325 (402)
T ss_dssp ------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG
T ss_pred ------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc
Confidence 11112225778899999999999986 455799999999999884 4444433 35689999998754
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-35 Score=258.18 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=215.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|||++|++|+.++ ++|||+.+++.......+ .+..+++.+..... .++++.|+.|++||..+++++..+.
T Consensus 25 v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~d~~v~iWd~~~~~~~~~~~ 98 (355)
T 3vu4_A 25 YEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYV---AFVTGVKEVVHIWDDVKKQDVSRIK 98 (355)
T ss_dssp EEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEE---EEECSSTTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEE---EEEECCccEEEEEECCCCcEEEEEE
Confidence 68999999999998775 789999888766554322 46777777643322 1337788999999999999999998
Q ss_pred CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEeCCccc
Q 035621 82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLIS--GGDDGVIATVPIFQLV 158 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~ 158 (387)
+..+|.+++++++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++++ |+.||.|++||+....
T Consensus 99 ~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 99 VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence 99999999999864 4444 4788999999988 66666654 445566777 55665 6899999999995421
Q ss_pred ccCCCCC---CCCccc-eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceeEEEe
Q 035621 159 DEHTDDK---NPDDLM-LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIMGLAL 230 (387)
Q Consensus 159 ~~~~~~~---~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~ 230 (387)
....... .....+ +..+.+|..+|.+++|+|++ .+|++|+.|++ |++||+++++++..+. |...|.+++|
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp ----------------CCEEECCCSSCEEEEEECTTS--SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred ccccccccccccccCcccEEEEccCCceEEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 1100000 001112 67889999999999999975 99999999998 9999999999999998 7889999999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccc--------------eeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ--------------ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
+|++++|++++.|+.|++||+............ ....+...+......++|++++++|++++.||.
T Consensus 249 s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~ 328 (355)
T 3vu4_A 249 STDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM 328 (355)
T ss_dssp CTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence 999999999999999999999764321110000 001111122233467899999999999999999
Q ss_pred EEEEECCCcc
Q 035621 297 VYIWEIEKRQ 306 (387)
Q Consensus 297 i~iwd~~~~~ 306 (387)
+++|++..++
T Consensus 329 ~~~~~~~~~~ 338 (355)
T 3vu4_A 329 IETFKVVFDD 338 (355)
T ss_dssp EEEEEEEEET
T ss_pred EEEEEEEcCC
Confidence 9999987643
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.8e-35 Score=260.52 Aligned_cols=262 Identities=16% Similarity=0.144 Sum_probs=211.5
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC----------CCcccccC-CCCCeeeEEeccCCC-EEE
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS----------STPLHNIP-VPEPVAPLATTADGS-YLF 99 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~l~ 99 (387)
.....|.+.|++++|+|+. ...+++++.+|.|++|++.+ ......+. |...+.+++|+|++. +|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred EEEEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 3445699999999999951 23445589999999999976 34444443 678899999999988 999
Q ss_pred EecCCCcEEEEeCCCCce-------eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621 100 TGGLSGNVYAISVPKGDI-------LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 100 ~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
+|+.||.|++||+..+.. ...+..|...|.+++|+| ++.+|++++.||.|++||++.. .....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~---------~~~~~ 269 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN---------NTSKP 269 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS---------CSSSC
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC---------CCCcc
Confidence 999999999999987422 455678999999999999 6789999999999999999532 11246
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEeCCCCC-eEEEEccCCcEEE
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVT-FPCAIMGLALDPTET-DFFAAGSDGLIYK 248 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 248 (387)
+..+..|...|++++|+|++ ..++++|+.||.|++||+++ ..++..+. +...|.+++|+|+++ +|++++.|+.|++
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp SEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 66778999999999999985 35799999999999999998 55677776 788999999999995 5888999999999
Q ss_pred Eecccccccccc-----ccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCcc
Q 035621 249 GLLKYQSRQQMH-----KGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 249 ~d~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 306 (387)
||+......... ....+.....+|...|++++|+|+++ +|++++.||.|++|++....
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 999873221110 01134444568899999999999999 89999999999999998653
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.2e-34 Score=253.28 Aligned_cols=277 Identities=12% Similarity=0.155 Sum_probs=230.2
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA 87 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~ 87 (387)
+.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++... +++++.|+.|++||+.+++.+..+.....+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l---~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~ 77 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKV---YVANAHSNDVSIIDTATNNVIATVPAGSSPQ 77 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEE---EEEEGGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEE---EEECCCCCeEEEEECCCCeEEEEEECCCCcc
Confidence 35788999999999999999999998887754 8999999976432 1236789999999999999988888888999
Q ss_pred eEEeccCCCEEEE-ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCCC
Q 035621 88 PLATTADGSYLFT-GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 88 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
+++|+|++++|++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~----------- 145 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINT----------- 145 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEET-----------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC-----------
Confidence 9999999998865 456799999999999988887654 578999999999977 68888999999999
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc---
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG--- 241 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 241 (387)
........+..+ ..+.+++|+|++ +.+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++
T Consensus 146 -~~~~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 146 -VTKAVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp -TTTEEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred -CCCcEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc
Confidence 445555666554 456899999885 555 778889999999999999999888888999999999999999988
Q ss_pred cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCccEEEEeecc
Q 035621 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
.++.|++||+.... .... ...| ..+.+++|+|++++| ++++.|+.|++||+.+++++..+..+
T Consensus 222 ~~~~v~~~d~~~~~--------~~~~-~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 222 YFNTVSMIDTGTNK--------ITAR-IPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp SCCEEEEEETTTTE--------EEEE-EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCcEEEEECCCCe--------EEEE-EecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 68999999998732 2222 2233 357899999999977 67788999999999999999888755
No 102
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=274.11 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=194.0
Q ss_pred eccCCCCCceeEEEcCcc---------ceeee---------------ccccCCCCCeEEEEEccCCCcc----cccC-CC
Q 035621 33 HFSGSRSPRRGLTFAGKP---------FIAAS---------------HISPTTGSGSVHLYNLWSSTPL----HNIP-VP 83 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~---------~~~~~---------------~~~~~~~d~~v~vw~~~~~~~~----~~~~-~~ 83 (387)
.+. +.+.|.+++|+|+. .+++. .+++++.|++|+||++.+++.. ..+. +.
T Consensus 129 ~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~ 207 (524)
T 2j04_B 129 IYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF 207 (524)
T ss_dssp EEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred EEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence 444 56789999999864 33332 3677899999999999887643 2233 45
Q ss_pred CCeeeEEeccC------CCEEEEecCCCcEEEEeCCCCce-----------eEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621 84 EPVAPLATTAD------GSYLFTGGLSGNVYAISVPKGDI-----------LRSFSAHDKPVSCLKISPDGSLLISGGDD 146 (387)
Q Consensus 84 ~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 146 (387)
+.|.+++|+|+ +.+||+++.||+|++||+.+++. ...+.+|...|++++|+|+ ..|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence 78999999996 57999999999999999976642 2367789999999999986 489999999
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcEEEEEe-cC--
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTHLSTVT-FP-- 222 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-- 222 (387)
|+|++||+.. ...+...+.+|...|.++++...+++ .+|++++.|++|++||+++++++..+. +.
T Consensus 287 gtV~lWD~~~-----------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 287 GFVAEFDLTD-----------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp SEEEEEETTB-----------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CEEEEEECCC-----------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 9999999942 12345567899999999954322334 799999999999999999887765554 32
Q ss_pred CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 223 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
..+.+++|+|+++.+++++.|+.|++||++.. ..+.. +.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~--------~~~~~-l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA--------FAVHP-LVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCT--------TCCEE-EEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECccc--------cccee-eecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 35889999999999999999999999999873 22222 3479999999999999999999999999999998
Q ss_pred CCc
Q 035621 303 EKR 305 (387)
Q Consensus 303 ~~~ 305 (387)
..+
T Consensus 427 ~~~ 429 (524)
T 2j04_B 427 ARR 429 (524)
T ss_dssp CSS
T ss_pred hHh
Confidence 654
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=256.13 Aligned_cols=259 Identities=18% Similarity=0.202 Sum_probs=215.0
Q ss_pred CCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621 36 GSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAIS 111 (387)
Q Consensus 36 ~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 111 (387)
+|... +.++.|+++. +++++.|+.|++||+.+++....+. +...|.+++|+|++++|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~~~------l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLN------VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECTTS------EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecCCC------EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 44443 4456676643 3336789999999999998776655 578899999999999999999999999999
Q ss_pred CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621 112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
+.+++.+..+.+|...|.+++| +++++++++.||.|++||++. .......+..|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI-----------ANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS-----------SSCEEEEEECCSSCEEEEEECTTS
T ss_pred CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc-----------CcceeeEEcCCCCCeeEEEEcCCC
Confidence 9999999999999999999999 457999999999999999932 345677888999999999999974
Q ss_pred CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE-EEc--cCCcEEEEeccccccccccccceeEe
Q 035621 192 FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF-AAG--SDGLIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
.+|++++.|+.|++||+++++.+..+. +...|.+++|+|++..++ +++ .|+.|++||+.++. ....
T Consensus 230 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--------~~~~ 299 (401)
T 4aez_A 230 --LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--------RVNT 299 (401)
T ss_dssp --SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--------EEEE
T ss_pred --CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--------EEEE
Confidence 899999999999999999999988886 778999999999875554 443 69999999998732 2222
Q ss_pred ecccccccEEEEEEecCCCEEEE--EeCCCcEEEEECCCccEEEE--eecccCCCceeEEEEe
Q 035621 268 LANRHDGVVVSVMMMNEGKNLVS--AAEDGSVYIWEIEKRQVVMV--LKNELAGSISEMVIAT 326 (387)
Q Consensus 268 ~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~ 326 (387)
+ .+...|.+++|+|++++|++ |+.||.|++||+.+++.... +..| .+.|.++.|++
T Consensus 300 ~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~ 359 (401)
T 4aez_A 300 V--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSP 359 (401)
T ss_dssp E--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECT
T ss_pred E--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECC
Confidence 2 36778999999999999998 45899999999999766654 4455 45888887765
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=260.40 Aligned_cols=304 Identities=12% Similarity=0.100 Sum_probs=239.4
Q ss_pred CCCcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcccccC-------------
Q 035621 16 PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------------- 81 (387)
Q Consensus 16 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------------- 81 (387)
.++.+++|+...++....+.+|.++|++++|+| ++.+++ +++.||.|++||+.+++....+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML----SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD 96 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEE----EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEE----EEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence 345688899988888889999999999999999 765544 48899999999999887766554
Q ss_pred -CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCc
Q 035621 82 -VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 82 -~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 156 (387)
|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.++|. +.++++++.|+.|++||+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-- 173 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-- 173 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES--
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC--
Confidence 778999999999 78899999999999999999999888776 7788999999984 449999999999999999
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEE----------------
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTV---------------- 219 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---------------- 219 (387)
.....+..+..|...|.+++|+|++ ..++++++.||.|++||++++. ++..+
T Consensus 174 ----------~~~~~~~~~~~~~~~v~~~~~~~~~-~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 174 ----------KSGSCSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp ----------SSSCCCEEECCCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred ----------CCcceeeeecCCCCcEEEEEECCCC-CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 4556778888999999999999986 2369999999999999998765 33333
Q ss_pred ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 220 TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 220 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
.+...|.+++|+|++++|++++.||.|++||+.............. ......+........+..+++++.|+.|++
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC----NNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC----CCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc----ccccccceeEEecCCCceEEEEecCCEEEE
Confidence 2567899999999999999999999999999988554322211111 011112222222334556777788999999
Q ss_pred EECCCccEEEEeecccCCCceeEEEEecC--------CCceeeEEEecCCC
Q 035621 300 WEIEKRQVVMVLKNELAGSISEMVIATGI--------GGSRGCGVVKTGKA 342 (387)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~ 342 (387)
||+.+++++..+.+|. +.|+++.|++.. ++.+.+|...++..
T Consensus 319 ~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 319 YTVYSGEQITMLKGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EETTTCCEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred EECcCCcceeeeccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 9999999999998774 589888776532 44456666665543
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.9e-34 Score=255.76 Aligned_cols=255 Identities=20% Similarity=0.231 Sum_probs=211.4
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
++.|+|+++..+. .+.|++|+|||..+++....+. |...|++++|+|+|++|++|+.||.|++||++++++
T Consensus 108 ~~~l~wS~~n~lA------vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 108 LNLVDWSSGNVLA------VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CBCEEECTTSEEE------EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ceeEEECCCCEEE------EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 5668888754332 3459999999999998877654 556799999999999999999999999999999999
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
+..+.+|...+.++.++ +.++++|+.|+.+++||... ....+..+.+|...+..+.+.|++ .+++
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~-----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~ 246 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV-----------AEHHVATLSGHSQEVCGLRWAPDG--RHLA 246 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS-----------SSCEEEEEECCSSCEEEEEECTTS--SEEE
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc-----------cceeeEEecccccceeeeeecCCC--Ceee
Confidence 99999999999998874 67999999999999999842 345667788999999999999885 8999
Q ss_pred EEeCCCcEEEEeCCCCcE----EEEE-ecCCceeEEEeCCCCCeE-EE--EccCCcEEEEeccccccccccccceeEeec
Q 035621 198 SCSMDCTCKFWRLLNGTH----LSTV-TFPCAIMGLALDPTETDF-FA--AGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l-~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
+++.|+.+++||..+++. +... .+...|.+++|+|.+..+ ++ |+.|+.|++||+.++. .....
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--------~~~~~- 317 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAV- 317 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--------EEEEE-
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--------cceee-
Confidence 999999999999987653 2333 367899999999987544 44 3569999999998732 22222
Q ss_pred ccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.+...+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|. +.|++++|++.
T Consensus 318 -~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~-~~V~~l~~spd 375 (420)
T 4gga_A 318 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSPD 375 (420)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECTT
T ss_pred -ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCC
Confidence 3456789999999999888765 79999999999999999999875 58999988763
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.4e-34 Score=255.82 Aligned_cols=274 Identities=10% Similarity=0.089 Sum_probs=227.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-----eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-----HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.+. ++++.|+.|++||+.+++.
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~s~~~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELW----VSQMQANAVHVFDLKTLAY 203 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEE----EEEGGGTEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEE----EEECCCCEEEEEECCCceE
Confidence 5789988899999999999999999998887 556889999999999865444 4478999999999999888
Q ss_pred ccccC-CCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe--------CC
Q 035621 77 LHNIP-VPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG--------DD 146 (387)
Q Consensus 77 ~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d 146 (387)
+..+. +...+.+++|+|++++++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+++++++++ .|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 87775 567899999999999885 4557899999999999988888754 5699999999999999888 58
Q ss_pred CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCcee
Q 035621 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIM 226 (387)
Q Consensus 147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 226 (387)
+.|++||+ ........ ..|...+.+++|+|++ ..++++++.|+.|++||+.+++.+..+.+...+.
T Consensus 283 g~i~~~d~------------~~~~~~~~-~~~~~~~~~~~~~~~g-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 348 (433)
T 3bws_A 283 GRLGIYSM------------DKEKLIDT-IGPPGNKRHIVSGNTE-NKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPN 348 (433)
T ss_dssp EEEEEEET------------TTTEEEEE-EEEEECEEEEEECSST-TEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred CeEEEEEC------------CCCcEEee-ccCCCCcceEEECCCC-CEEEEEecCCCEEEEEECCCCcEEEEecCCCCCC
Confidence 89999999 33333333 3566688899999885 3466777899999999999999999998888999
Q ss_pred EEEeCCCCCeEEEEcc---------------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 227 GLALDPTETDFFAAGS---------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
+++|+|+++++++++. ||.|++||..+.. ....+ .+...+.+++|+|+|++|+++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--------VKEFW--EAGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTTSCEEEEE
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc--------EEEEe--cCCCCCceEEEcCCCCEEEEE
Confidence 9999999999988876 4799999998732 22222 234578999999999999887
Q ss_pred eC-CCcEEEEECCC
Q 035621 292 AE-DGSVYIWEIEK 304 (387)
Q Consensus 292 ~~-dg~i~iwd~~~ 304 (387)
+. |+.|++|+++.
T Consensus 419 ~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 419 DFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEETT
T ss_pred ECCCCeEEEEEecC
Confidence 75 99999999864
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=256.59 Aligned_cols=243 Identities=14% Similarity=0.199 Sum_probs=203.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~ 77 (387)
++|+|++++|++|+.||.|+|||+. +++.+..+.+|..+|++++|+++. ....+++++.||.|++||+.+++ ..
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~ 94 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLIWKEENGRWSQI 94 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccCCEEEEEEcCCCceeEe
Confidence 5799999999999999999999997 667788899999999999998741 12345558999999999999886 44
Q ss_pred cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcC-------------CCCE
Q 035621 78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISP-------------DGSL 139 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~ 139 (387)
..+. +...|.+++|+|+ +.+|++++.|+.|++||++++. ....+..|...|.+++|+| ++.+
T Consensus 95 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence 4444 7789999999999 9999999999999999998873 3445678999999999999 6999
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCc---E
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGT---H 215 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~---~ 215 (387)
+++++.||.|++||++... ........+..|...|.+++|+|+.. +.+|++++.||.|++||++++. .
T Consensus 175 l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred EEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence 9999999999999984210 12235567788999999999999821 3899999999999999999874 2
Q ss_pred EEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 216 LSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 216 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
...+. +...+.+++|+|++++|++++.||.|++|++...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 22222 5678999999999999999999999999999863
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=263.01 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=196.6
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----------cccccC-CC------------CCeeeEEec
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----------PLHNIP-VP------------EPVAPLATT 92 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~-~~------------~~v~~~~~~ 92 (387)
+.+.|.+++|+|++.+ +++++.||.|++||+.+++ ....+. |. ..|.+++|+
T Consensus 27 ~~~~V~~v~~s~~g~~----la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADIISTVEFNHSGEL----LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGSEEEEEECSSSSE----EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCcEEEEEECCCCCE----EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 6778999999996544 4458999999999998776 233333 55 779999999
Q ss_pred cCC--CEEEEecCCCcEEEEeCCCCcee---------------------------------------EE-ccCCCCCeEE
Q 035621 93 ADG--SYLFTGGLSGNVYAISVPKGDIL---------------------------------------RS-FSAHDKPVSC 130 (387)
Q Consensus 93 ~~~--~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~ 130 (387)
|++ .+|++++.|+.|++||+.+++.. .. ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999998764432 12 3679999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE-------eeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 131 LKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ-------KFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 131 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
++|+|++++|+++ .|+.|++||+.. ...... .+..|...|.+++|+|++ .++|++++.||
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg 249 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEI-----------TDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG 249 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTE-----------EEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCC-----------CCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC
Confidence 9999999999998 799999999942 112222 356899999999999884 37999999999
Q ss_pred cEEEEeCCCCcE----EEEEecC-C------------ceeEEEeCCCCCeEEEEccCCcEEEEeccc-ccccccccccee
Q 035621 204 TCKFWRLLNGTH----LSTVTFP-C------------AIMGLALDPTETDFFAAGSDGLIYKGLLKY-QSRQQMHKGQEL 265 (387)
Q Consensus 204 ~i~iwd~~~~~~----~~~~~~~-~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~ 265 (387)
.|++||+++++. ...+..+ . .|.+++|+|++++|++++. +.|++||++. ....
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~-------- 320 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV-------- 320 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS--------
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc--------
Confidence 999999999886 6677643 2 8999999999999999998 9999999986 2221
Q ss_pred Eeecccccc---------------cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 266 VTLANRHDG---------------VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 266 ~~~~~~~~~---------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
..+..|.. .+..++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 321 -~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 321 -ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp -CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred -ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 11223432 13459999999999999999999999999998874
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.5e-35 Score=252.85 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=200.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
++|+|++++|++|+.||.|++||+.++ +....+.+|..+|.+++|+|. .. .+++++.||.|++||+.+++
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~----~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR----IIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS----EEEEEETTSCEEEEEECTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC----EEEEEcCCCeEEEEecCCCc
Confidence 679999999999999999999999876 467778899999999999982 33 34458999999999998874
Q ss_pred ---------cccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCceeEEcc-------------CCCCCeEE
Q 035621 76 ---------PLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDILRSFS-------------AHDKPVSC 130 (387)
Q Consensus 76 ---------~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~v~~ 130 (387)
....+. +...|.+++|+|+ +++|++++.||.|++||+++++.+..+. .|...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 233333 6789999999999 9999999999999999998887544332 57889999
Q ss_pred EEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC--ceEEEEeCCCcE
Q 035621 131 LKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN--SIIISCSMDCTC 205 (387)
Q Consensus 131 ~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~d~~i 205 (387)
++|+|+ +.++++++.|+.+.+|+... ........+.+|...|.+++|+|++.. ++|++++.||.|
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKD----------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTT----------SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCC----------CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 999997 89999999999998877622 122346778889999999999998522 799999999999
Q ss_pred EEEeCCCC----------------------------------------------cEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621 206 KFWRLLNG----------------------------------------------THLSTVT-FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 206 ~iwd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~ 238 (387)
++||++++ +.+..+. |...|++++|+|++++|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 99999875 3444454 678899999999999999
Q ss_pred EEccCCcEEEEecccc
Q 035621 239 AAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~~ 254 (387)
+++.||.|++|++..+
T Consensus 323 s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYS 338 (351)
T ss_dssp EEETTSCEEEEEECTT
T ss_pred EecCCCcEEEEecCcC
Confidence 9999999999999873
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=249.46 Aligned_cols=283 Identities=12% Similarity=0.124 Sum_probs=222.5
Q ss_pred EEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcc-cccC-CCCCeeeEEeccCCCEE
Q 035621 22 AYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPL-HNIP-VPEPVAPLATTADGSYL 98 (387)
Q Consensus 22 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~l 98 (387)
.++....+.+..+.+|.+.|++++|+|+.. ....+++++.||.|++||+.+ +..+ ..+. |...|.+++|+|++++|
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 345566778888999999999999999620 023444589999999999987 4443 3333 78899999999999999
Q ss_pred EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621 99 FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKI--SPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176 (387)
Q Consensus 99 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 176 (387)
++++.||.|++||+++++.+. +..|...|++++| +|++++|++++.||.|++||+ .....+..+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~------------~~~~~~~~~~ 168 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT------------RSSNPMMVLQ 168 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS------------SCSSCSEEEE
T ss_pred EEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC------------CCCcEEEEEe
Confidence 999999999999999988766 4569999999999 899999999999999999999 4455666666
Q ss_pred ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCe----EEEEccCCcEEEE
Q 035621 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETD----FFAAGSDGLIYKG 249 (387)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~ 249 (387)
.+. .+.++.+.+ ..+++++.++.+++|+++......... ......++++.++... +++++.||.|++|
T Consensus 169 ~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 169 LPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp CSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred cCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 554 555555542 578888899999999998876544332 3455666766666554 9999999999999
Q ss_pred eccccccccccccceeEeeccccc------------ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHD------------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG 317 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (387)
++...... .....+..|. ..|++++|+|++++|++++.||.|++||+.+++++..+..| .+
T Consensus 244 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 316 (368)
T 3mmy_A 244 YINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQ 316 (368)
T ss_dssp ESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred ecCCCCcc------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CC
Confidence 99875321 1111112333 37999999999999999999999999999999999999876 45
Q ss_pred CceeEEEEecCCC
Q 035621 318 SISEMVIATGIGG 330 (387)
Q Consensus 318 ~v~~~~~~~~~~~ 330 (387)
.|++++|++...-
T Consensus 317 ~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 317 PISACCFNHNGNI 329 (368)
T ss_dssp CEEEEEECTTSSC
T ss_pred CceEEEECCCCCe
Confidence 9999999875543
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=280.09 Aligned_cols=258 Identities=13% Similarity=0.162 Sum_probs=210.5
Q ss_pred eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcccccC-CCCCeeeEEeccC--CCEEEEecCCC
Q 035621 31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSG 105 (387)
Q Consensus 31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg 105 (387)
+..+.+|.++|++++|+|++. .+++++.||.|++||+.. ++....+. |..+|.+++|+|+ +++|++|+.||
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp ------CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 346789999999999999654 455589999999999984 44555554 7789999999988 99999999999
Q ss_pred cEEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621 106 NVYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS 181 (387)
Q Consensus 106 ~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
.|++||+.+++ .+..+..|...|++++|+|+ ++++++++.||.|++||++.. .......+..|...
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~----------~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN----------GTTSPIIIDAHAIG 147 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS----------SCCCCEEEECCSSC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC----------CCcceeEeecCCCc
Confidence 99999999886 67778889999999999999 999999999999999999531 22345567789999
Q ss_pred eEEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceeEEEeCCC---CCeEEEEcc
Q 035621 182 VTAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGT----HLSTVT-FPCAIMGLALDPT---ETDFFAAGS 242 (387)
Q Consensus 182 i~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~ 242 (387)
|.+++|+|.. ++.++++|+.||.|++||++++. ....+. |...|.+++|+|+ ++++++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 9999999841 35899999999999999998873 444444 6789999999999 899999999
Q ss_pred CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
||.|++||+........ ........|...|++++|+|++++|++|+.||.|++|++..+.
T Consensus 228 Dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCEEEEEESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEecCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999987532111 1111223688899999999999999999999999999998643
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-33 Score=253.38 Aligned_cols=253 Identities=18% Similarity=0.263 Sum_probs=214.3
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVP 113 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 113 (387)
.+|...|.++.+..+ .+++++.||.|++||+.+++....+. |...|.+++| ++++|++|+.||.|++||+.
T Consensus 130 ~~~~~~v~~~~~d~~------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQYDDQ------KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEECCSS------EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEECCC------EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 456677998888542 34458899999999999998888776 7788999998 78899999999999999999
Q ss_pred CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC
Q 035621 114 KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN 193 (387)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (387)
+++.+..+..|...|.+++|++ .++++++.||.|++||+... ........+.+|...|.++++ + +
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~--~--~ 266 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP---------TDITLRRVLVGHRAAVNVVDF--D--D 266 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS---------SCCEEEEEECCCSSCEEEEEE--E--T
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC---------CCceeeeEecCCCCcEEEEEe--C--C
Confidence 9999999999999999999974 59999999999999999431 111223667889999999998 3 4
Q ss_pred ceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc
Q 035621 194 SIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH 272 (387)
Q Consensus 194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 272 (387)
+++++++.||.|++||+++++.+..+. +...+.++++ +++++++|+.||.|++||++++ .....+.+|
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h 335 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVLEGH 335 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEEeCC
Confidence 799999999999999999999999888 6788999998 4689999999999999999873 223334579
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc---------EEEEeecccCCCceeEEE
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ---------VVMVLKNELAGSISEMVI 324 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~ 324 (387)
...|.+++| ++.+|++|+.||.|++||+.+++ ++..+..|. +.|+++.|
T Consensus 336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~ 393 (435)
T 1p22_A 336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS-GRVFRLQF 393 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS-SCCCCEEE
T ss_pred cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC-CCeEEEEe
Confidence 999999999 78899999999999999998877 788887764 48888865
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-34 Score=250.38 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=192.1
Q ss_pred ccccCCCcEEEee-----------CCCCcEEEEeCCCCcee----Eec-----cCCCCCceeEEEcCccceeeeccccCC
Q 035621 2 LHHLPCNEVILTS-----------SPEGPITAYNPSSGAIL----AHF-----SGSRSPRRGLTFAGKPFIAASHISPTT 61 (387)
Q Consensus 2 l~~s~~~~~l~~~-----------~~dg~i~iwd~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~ 61 (387)
++++++++.+++| +.|+.+++|++.+.... ... ..+...+.+++|+|++.+.+ +++++
T Consensus 77 ~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la--~as~~ 154 (365)
T 4h5i_A 77 TAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA--IASSK 154 (365)
T ss_dssp CEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE--EEESC
T ss_pred EEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE--EEECC
Confidence 4567777777665 45788999998654321 111 22344588999999776542 23477
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCE
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 139 (387)
.|++|++||+.+++++..+.+...|.+++|+|+|+++++++.+ .+.+|+..+++.+. ....|...|.+++|+|++++
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 233 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV 233 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence 8999999999999999999999999999999999999999855 57777777776654 34568889999999999999
Q ss_pred EEEEeCCC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 140 LISGGDDG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 140 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
+++++.|+ .++.|++.... ........+..|..+|++++|+|++ ++|++|+.|++|+|||++++++
T Consensus 234 l~~~s~d~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~V~~~~~Spdg--~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 234 LIAASLKKGKGIVLTKISIKSGN--------TSVLRSKQVTNRFKGITSMDVDMKG--ELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEEESSSCCEEEEEEEEETTE--------EEEEEEEEEESSCSCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEecCCcceeEEeecccccce--------ecceeeeeecCCCCCeEeEEECCCC--CceEEEcCCCEEEEEECCCCcE
Confidence 99999887 57888873210 1112345677899999999999985 9999999999999999999999
Q ss_pred EEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 216 LSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 216 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
+..+. |...|++++|+|||++|++++.|++|+||++..
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 98874 788999999999999999999999999999965
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=252.58 Aligned_cols=271 Identities=11% Similarity=0.089 Sum_probs=215.0
Q ss_pred CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---cccccC----------------------------------
Q 035621 39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLHNIP---------------------------------- 81 (387)
Q Consensus 39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~---------------------------------- 81 (387)
.++.+++|++++.++. ++.++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~-----~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-----AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEE-----EEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEE-----EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 5689999999765443 3468899999999888 433322
Q ss_pred ---------------------CCCCeeeEEeccCCCEE-EEecCCCcEEEEeCC--CCceeEEcc--CCCCCeEEEEEcC
Q 035621 82 ---------------------VPEPVAPLATTADGSYL-FTGGLSGNVYAISVP--KGDILRSFS--AHDKPVSCLKISP 135 (387)
Q Consensus 82 ---------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~ 135 (387)
+...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|++++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 12259999999999996 899999999999999 888888876 5678999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc-ceEeeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC
Q 035621 136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL-MLQKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
++++|++++.+|.+++|++.... ... ....+.+|...|.+++|+|+ ..+.+|++++.|+.|++||++++
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIP---------EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCC---------CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CCCEEEEEeCCCcEEEEecCCcc---------cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999984321 111 33467789999999999998 11389999999999999999999
Q ss_pred cEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee----------------Eeeccccccc
Q 035621 214 THLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL----------------VTLANRHDGV 275 (387)
Q Consensus 214 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 275 (387)
+.+..+. |...|.+++|+ ++++|++++.|+.|++||+.++........... ..........
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 9887754 77899999999 999999999999999999987543222110000 0000023457
Q ss_pred EEEEEEecCCCEEEEEe-CCCcEEEEEC--CCc---cEEEEeecccCCCceeEEEEe
Q 035621 276 VVSVMMMNEGKNLVSAA-EDGSVYIWEI--EKR---QVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|.+++|+|++++|++++ .|+.|++|++ .++ +.+..+..+ +.|.+++|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~ 364 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHN 364 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecC
Confidence 99999999999999998 8999999999 666 777777776 6899999987
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.5e-33 Score=237.05 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=210.4
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
.++|+|+++..+. .+.|++|++||+.+++++..+. |...|.+++|+|++++|++|+.||.|++||++++++
T Consensus 28 ~~~l~WS~~~~lA------vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGNVLA------VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTSEEE------EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCCEEE------EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 5789999876433 3469999999999999887664 556799999999999999999999999999999999
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
+..+.+|...+.++.+ ++..+++++.++.+++|+.. .....+..+.+|...+..+.+.+.+ ++++
T Consensus 102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ 166 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDG--RHLA 166 (318)
T ss_dssp EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----------SSSCEEEEEECCSSCEEEEEECTTS--SEEE
T ss_pred EEEecCccceEEEeec--CCCEEEEEecCCceEeeecC-----------CCceeEEEEcCccCceEEEEEcCCC--CEEE
Confidence 9999999998887665 56799999999999999883 2345667788999999999998875 8999
Q ss_pred EEeCCCcEEEEeCCCCcEE-----EEEecCCceeEEEeCCCCCeEE---EEccCCcEEEEeccccccccccccceeEeec
Q 035621 198 SCSMDCTCKFWRLLNGTHL-----STVTFPCAIMGLALDPTETDFF---AAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
+++.|+.|++||+++++.. ....+...+.+++++|++..++ +++.++.|++||..... ....
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--------~~~~-- 236 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSA-- 236 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--------EEEE--
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--------cccc--
Confidence 9999999999999886532 2223667899999999876543 45678999999988732 2222
Q ss_pred ccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
..+...+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|. +.|++++|++
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l~~sp 294 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSP 294 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECT
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcC
Confidence 25677899999999999887654 79999999999999999999875 5899998875
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.9e-33 Score=249.15 Aligned_cols=238 Identities=16% Similarity=0.215 Sum_probs=201.7
Q ss_pred ccccCC-CcEEEeeCCCCcEEEEeCCC----------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621 2 LHHLPC-NEVILTSSPEGPITAYNPSS----------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN 70 (387)
Q Consensus 2 l~~s~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~ 70 (387)
++|+|+ +.+||+++.+|.|++||+.+ .+.+..+.+|...|.+++|+|+.. ..+++++.||.|++|+
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~~l~s~~~dg~i~vwd 210 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN---GYLLSASDDHTICLWD 210 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST---TEEEEECTTSCEEEEE
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC---CeEEEEeCCCeEEEEe
Confidence 578997 78999999999999999976 577888899999999999999543 1345589999999999
Q ss_pred ccCCCc-------cccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCC
Q 035621 71 LWSSTP-------LHNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 71 ~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
+.++.. ...+ .|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|++++|+|++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 290 (430)
T 2xyi_A 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290 (430)
T ss_dssp TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence 987432 1222 4678899999999 7789999999999999999887 56777889999999999999887
Q ss_pred -EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-----
Q 035621 139 -LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN----- 212 (387)
Q Consensus 139 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----- 212 (387)
++++|+.||.|++||++. ...++..+..|...|.+++|+|++ ..+|++++.|+.|++||+..
T Consensus 291 ~~l~tg~~dg~v~vwd~~~-----------~~~~~~~~~~h~~~v~~i~~sp~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 291 FILATGSADKTVALWDLRN-----------LKLKLHSFESHKDEIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp TEEEEEETTSEEEEEETTC-----------TTSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CEEEEEeCCCeEEEEeCCC-----------CCCCeEEeecCCCCEEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCcccc
Confidence 688999999999999943 234677888999999999999985 46799999999999999987
Q ss_pred ---------CcEEEEEe-cCCceeEEEeCCCCC-eEEEEccCCcEEEEecccc
Q 035621 213 ---------GTHLSTVT-FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 213 ---------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 254 (387)
.+.+..+. |...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 24555554 567899999999999 8899999999999999764
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.6e-31 Score=237.87 Aligned_cols=277 Identities=11% Similarity=0.060 Sum_probs=220.8
Q ss_pred cEEEEeCCCC--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCCCeeeEE
Q 035621 19 PITAYNPSSG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPEPVAPLA 90 (387)
Q Consensus 19 ~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~~v~~~~ 90 (387)
.|..+|..++ +.+..+..+. .+.+++|+|+..+.. +++.++.|++||+.+++...... +...+.+++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~----~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI----PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE----EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE----EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 4555555445 5566666554 466999999554443 37889999999999988776332 556899999
Q ss_pred eccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEeCCcccccCCCCCCCCc
Q 035621 91 TTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS-GGDDGVIATVPIFQLVDEHTDDKNPDD 169 (387)
Q Consensus 91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~ 169 (387)
|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||+ ...
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~------------~~~ 244 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR------------KTK 244 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET------------TTT
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC------------CCC
Confidence 9999999999999999999999999999999889999999999999998854 458999999999 344
Q ss_pred cceEeeeccCCCeEEEEEeeCCCCceEEEEe--------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeE-EEE
Q 035621 170 LMLQKFVAHNDSVTAITCCIGSFNSIIISCS--------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDF-FAA 240 (387)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 240 (387)
..+..+.. ...+.+++|+|++ +++++++ .|+.|++||+.+++.+..+.+...+.+++|+|+++.+ +++
T Consensus 245 ~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 245 LEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp EEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred cEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence 45555544 3458899999875 7888777 5889999999999988888777889999999999765 555
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC---------------CCcEEEEECCCc
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE---------------DGSVYIWEIEKR 305 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~ 305 (387)
+.++.|++||+.... ....+ .+...+.+++|+|++++|++++. ||.|++||+.++
T Consensus 322 ~~~~~v~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 322 MCCSKIEVYDLKEKK--------VQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp TTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred cCCCEEEEEECCCCc--------EEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 889999999998632 22222 36678999999999999888876 579999999999
Q ss_pred cEEEEeecccCCCceeEEEEec
Q 035621 306 QVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+.+..+..+ ..+.++.|++.
T Consensus 392 ~~~~~~~~~--~~~~~~~~s~d 411 (433)
T 3bws_A 392 TVKEFWEAG--NQPTGLDVSPD 411 (433)
T ss_dssp EEEEEEECS--SSEEEEEECTT
T ss_pred cEEEEecCC--CCCceEEEcCC
Confidence 999988763 46788877653
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-31 Score=233.42 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=179.1
Q ss_pred EEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE-EE
Q 035621 22 AYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL-FT 100 (387)
Q Consensus 22 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 100 (387)
||++.+.+.+..+..|..+|++++|+|++.+++. ++.+ .+++|++++++......+. .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~----g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLIL----STLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEE----ECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEE----EcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEE
Confidence 5677777888888899999999999997665543 6655 5789999877665544333 57888899988877 56
Q ss_pred ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621 101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180 (387)
Q Consensus 101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (387)
++.|+.|++||+.+++++..+. +...|.+++|+++. ++++ .|+.|++||+... ...+..+..
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~-----------~~~~~~~~~--- 138 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNP-----------WKRITDDIR--- 138 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTT-----------CCBSSCCEE---
T ss_pred ECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCC-----------ceeeEEecc---
Confidence 7788999999999999998886 67799999998764 4443 4789999999431 023333333
Q ss_pred CeEEEEEeeCCCCceEEE--EeCCCcEEEEeCCCCc---------------E-EEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621 181 SVTAITCCIGSFNSIIIS--CSMDCTCKFWRLLNGT---------------H-LSTVT-FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~---------------~-~~~~~-~~~~v~~~~~~~~~~~l~~~~ 241 (387)
+...+++++ .+++. |+.||.|++||+.+++ + +..+. |...|.+++|+|++++|++++
T Consensus 139 ~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 333445555 34444 6889999999999865 1 44554 788999999999999999999
Q ss_pred cCCc-EEEEeccccccccccccceeEeeccc-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 242 SDGL-IYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 242 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
.|+. |++||+++ +..+..+..+ |...|.+++|+|++++|++++.|++|++||+..+.
T Consensus 215 ~d~~~v~iwd~~~--------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 215 QDGTIIRVFKTED--------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTCSEEEEEETTT--------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCCEEEEEECCC--------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9998 99999987 3344444324 99999999999999999999999999999998764
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=268.12 Aligned_cols=243 Identities=14% Similarity=0.190 Sum_probs=203.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~ 77 (387)
++|+|++++|++|+.||.|+|||+. +++.+..+.+|.++|++++|+++. ....+++++.||.|++||+.+++ ..
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLIWKEENGRWSQI 92 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeEEEEECCCCccccc
Confidence 6899999999999999999999997 567788899999999999999751 12345558999999999999885 44
Q ss_pred cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcC-------------CCCE
Q 035621 78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISP-------------DGSL 139 (387)
Q Consensus 78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~ 139 (387)
..+. |...|.+++|+|+ ++++++|+.||.|++||++++. ....+..|...|.+++|+| ++.+
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 4443 7789999999999 9999999999999999998773 3455678999999999999 5899
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEE--
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHL-- 216 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~-- 216 (387)
+++|+.||.|++||++... ........+.+|..+|.+++|+|+.. +.++++++.||.|++||+++++..
T Consensus 173 l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred EEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence 9999999999999994310 12245667889999999999999821 389999999999999999986421
Q ss_pred ----EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 217 ----STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 217 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
....+...+.+++|+|+++++++++.||.|++|++...
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 11126678999999999999999999999999999853
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.5e-32 Score=228.72 Aligned_cols=257 Identities=12% Similarity=0.037 Sum_probs=181.3
Q ss_pred EEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccc--ee----------eeccccCCCCCeEEEEEccCC
Q 035621 10 VILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPF--IA----------ASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~--~~----------~~~~~~~~~d~~v~vw~~~~~ 74 (387)
-++++++ ..|++|+..++ +.++++..|+.+|..+.+.|+.. +. ...++.+..|..+.-|.+..+
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 4666765 68999999998 88999999999999999998321 10 111222233232222222211
Q ss_pred CcccccCCCCCeeeEEeccCCCEEEEec--CCCcEEEEeC-CCCceeEEccCCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 035621 75 TPLHNIPVPEPVAPLATTADGSYLFTGG--LSGNVYAISV-PKGDILRSFSAHDKPVSCLKISP---DGSLLISGGDDGV 148 (387)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~ 148 (387)
. ...+..+ ++++++.+++ .|+.|++|++ ++++.+..+..|...++.++|+| ++.+|++++.|++
T Consensus 135 ~-------~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~T 204 (356)
T 2w18_A 135 N-------IKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNN 204 (356)
T ss_dssp E-------EEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSE
T ss_pred C-------eEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCc
Confidence 1 1112222 4555555533 5899999999 55888888889999999999999 7799999999999
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccC---CCeEEEEEeeCCCCceE------------EEEeCCCcEEEEeCCCC
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---DSVTAITCCIGSFNSII------------ISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l------------~s~~~d~~i~iwd~~~~ 213 (387)
|++||+ .+++.++.+.+|. ..+.+++|+|++ .++ ++|+.|++|++||..++
T Consensus 205 IkIWDl------------~TGk~l~tL~g~~~~v~~v~~vafSpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 205 IVIWNL------------KTGQLLKKMHIDDSYQASVCHKAYSEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp EEEEET------------TTCCEEEEEECCC---CCCEEEEEEETT--EEEEEEC------------CCEEEEEEETTTT
T ss_pred EEEEEC------------CCCcEEEEEcCCCcceeeeEEEEECCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 999999 6777888887654 367778899975 554 67888999999999999
Q ss_pred cEEEEEe------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCC
Q 035621 214 THLSTVT------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGK 286 (387)
Q Consensus 214 ~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~ 286 (387)
+.+..+. +...+.+..+ ++..+++++.|++|++||+.++ .. ...+.+|...+. .++|+|||+
T Consensus 271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG--------k~-l~tL~gH~~~vvs~vafSPDG~ 339 (356)
T 2w18_A 271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG--------QC-TALLPPVSDQHWSFVKWSGTDS 339 (356)
T ss_dssp EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------SE-EEEECCC--CCCCEEEECSSSS
T ss_pred EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC--------cE-EEEecCCCCCeEEEEEECCCCC
Confidence 8877652 1222333333 3778999999999999999883 33 333456776655 689999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 035621 287 NLVSAAEDGSVYIWEI 302 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~ 302 (387)
+|++|+.|++|+|||+
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999995
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=254.60 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=170.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++|+|+| .++.+.+|+.+ +.....+ .|...|.+++|+|++...+ +++.||.|++||.+. ++..+.
T Consensus 58 V~FsPdg-------~~~~~~~~~~~-~~~~~~~-~~~~~V~~vawSPdG~~LA----s~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 58 VKEFPLE-------FENKLDFELAQ-QNGLLNS-QPVCYPRVCKPSPIDDWMA----VLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp EEEECCC-------CCCTTTTSCCC-SSCSSTT-SCSCCEEEEEECSSSSCEE----EEETTSCEEEEETTE--EEEECC
T ss_pred EEECCCC-------CcceEEEEeCC-CceEeec-CCCCcEEEEEECCCCCEEE----EEeCCCcEEEEeCCc--eeeecc
Confidence 4677777 45555555532 2223333 4578899999999665544 499999999999544 444445
Q ss_pred CCC-----CeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-------eEEc----cCCCCCeEEEEEcCCCCEEEEEeC
Q 035621 82 VPE-----PVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-------LRSF----SAHDKPVSCLKISPDGSLLISGGD 145 (387)
Q Consensus 82 ~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~ 145 (387)
+.. .+.+++|+|||++|++|+.||+|++||+.++.. +.++ .+|...|.+++|+|+| +++++.
T Consensus 123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence 333 499999999999999999999999999988753 5665 6788899999999999 888999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEecCC
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVTFPC 223 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~ 223 (387)
|++|++||+... ........+ .+|...|.+++|+ + +.+++++ +++|++||+.+++. ...+.|..
T Consensus 201 D~tVrlWd~~~~---------~~~~~~~tL~~~h~~~V~svaFs-g---~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 201 NNSVFSMTVSAS---------SHQPVSRMIQNASRRKITDLKIV-D---YKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp TCCEEEECCCSS---------SSCCCEEEEECCCSSCCCCEEEE-T---TEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred CCeEEEEECCCC---------ccccceeeecccccCcEEEEEEE-C---CEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 999999999321 000123455 4788999999998 2 7888887 69999999998887 44446889
Q ss_pred ceeEEEe--CCCCCeEEEEccCCcEEEEecc
Q 035621 224 AIMGLAL--DPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 224 ~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
.+..++| +|++..+++++.+|. ++|...
T Consensus 267 ~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999999 999999999999999 999874
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.8e-33 Score=244.88 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=189.8
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCC----------ceeEeccCCCCCceeEEEcCccc----------------eeeeccc
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSG----------AILAHFSGSRSPRRGLTFAGKPF----------------IAASHIS 58 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~ 58 (387)
+|++..|++++.++.|.+|+.... ..+..+ .+..++..+.|.+... .....++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 444444444445788999976321 111111 2444555666553211 1223567
Q ss_pred cCCCCCeEEEEEccCCCccc-----ccC-CCCCeeeEEecc--------CCCEEEEecCCCcEEEEeCCCCceeEEccCC
Q 035621 59 PTTGSGSVHLYNLWSSTPLH-----NIP-VPEPVAPLATTA--------DGSYLFTGGLSGNVYAISVPKGDILRSFSAH 124 (387)
Q Consensus 59 ~~~~d~~v~vw~~~~~~~~~-----~~~-~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 124 (387)
+++.|++|++||+.+++... .+. |.+.|.+++|+| ++++|++|+.|++|++||++++.++..+..|
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~ 185 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL 185 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence 79999999999998875432 233 778999999998 7899999999999999999988888888889
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCC-------------CccceEeeeccCCCeEEEEEeeC
Q 035621 125 DKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNP-------------DDLMLQKFVAHNDSVTAITCCIG 190 (387)
Q Consensus 125 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~ 190 (387)
..++.+++|+|++. +|++++.|++|++||++............ .........+|...+.++.|.+.
T Consensus 186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence 99999999999874 89999999999999996532211111000 00111223568888999998742
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc------------------eeEEEeCC--CCCeEEEEccCCcEEEE
Q 035621 191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA------------------IMGLALDP--TETDFFAAGSDGLIYKG 249 (387)
Q Consensus 191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~------------------v~~~~~~~--~~~~l~~~~~dg~i~i~ 249 (387)
++..+++++.|+++++||+..++....+. +... .....++| ++.++++|+.||.|++|
T Consensus 266 -dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 266 -DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp -TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred -CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 25899999999999999998876554443 1111 22233333 33456678889999999
Q ss_pred eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
|...+. .... ...|..+|.+++|+|||++||+++.|| +.+|.+.
T Consensus 345 d~~~~~--------~~~~-~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 345 NTYEKD--------SNSI-PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ETTCTT--------CCEE-EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ECCCCc--------EEEE-ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 998732 2222 236888999999999999999998776 6666543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=232.12 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=182.3
Q ss_pred eeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---------CCceeEEcc-
Q 035621 53 AASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---------KGDILRSFS- 122 (387)
Q Consensus 53 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~- 122 (387)
....+++|+.||.|++||+.+++.+..+. ...|.++.++|+ +++++.|+.|++|+.. +++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 34566779999999999999998877776 467888899988 9999999999999664 555454444
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEE
Q 035621 123 AHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 123 ~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~ 199 (387)
.|...|.+++|+| +++++++++.||.|++||+ ......... ..|...+.+++|+|++ .+|++|
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~------------~~~~~~~~~~~~~~~~i~~~~~~pdg--~~lasg 188 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY------------EDDSQYIVHSAKSDVEYSSGVLHKDS--LLLALY 188 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEES------------SSSCEEEEECCCSSCCCCEEEECTTS--CEEEEE
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC------------CCCcEEEEEecCCCCceEEEEECCCC--CEEEEE
Confidence 6778999999999 9999999999999999999 344444444 3455689999999975 899999
Q ss_pred eCCCcEEEEeCCCCcEE-EEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 200 SMDCTCKFWRLLNGTHL-STVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 200 ~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
+.||.|++||+++++.+ ..+. |...|.+++|+|++.+|++++ ++.|++||++.......... +..|...+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~------~~~~~~~~ 261 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT------YTIPEFKT 261 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC------CBC-----
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc------cccccccc
Confidence 99999999999999877 6665 578999999999999999999 55999999988543222111 11123333
Q ss_pred --EEEEEecCCCEEEEEeC-CCcEEEEECCCccE
Q 035621 277 --VSVMMMNEGKNLVSAAE-DGSVYIWEIEKRQV 307 (387)
Q Consensus 277 --~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~ 307 (387)
.+++|+|++++|++++. |+.|++|++.....
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 46999999999999998 99999999976544
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2e-32 Score=241.42 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=179.7
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCce-----eEeccCCCCCceeEEEcCcc----ceeeeccccCCCCCeEEEEEccC
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAI-----LAHFSGSRSPRRGLTFAGKP----FIAASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~d~~v~vw~~~~ 73 (387)
.+++++.+|++|+.|++|+|||..+++. +..+.+|.+.|++++|+|.. ......+++++.|++|++||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 4567788999999999999999988754 34578999999999999721 12345677799999999999987
Q ss_pred CCcc-cccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEE-------------------------ccCCCC
Q 035621 74 STPL-HNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRS-------------------------FSAHDK 126 (387)
Q Consensus 74 ~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~~ 126 (387)
+.+. ..+.+..++.+++|+|++ .+|++++.|++|++||+++++.... ..+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 7654 455688999999999987 4799999999999999987754322 235777
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCCC-------CCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621 127 PVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDKN-------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS 198 (387)
Q Consensus 127 ~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 198 (387)
.+.++.|+ |+++.+++++.|+.+++||+............ ...........+ .......+++..++.++++
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEECSSCTTEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEccCCCCEEEEE
Confidence 88999986 79999999999999999998532211110000 000011111112 2223344556555667888
Q ss_pred EeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621 199 CSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK 252 (387)
Q Consensus 199 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 252 (387)
|+.||+|++||+.+++...... +..+|.+++|+|+|++|++++.+| +.+|.+.
T Consensus 335 gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999999988766554 788999999999999999998766 5555543
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.3e-30 Score=227.52 Aligned_cols=284 Identities=10% Similarity=0.106 Sum_probs=218.2
Q ss_pred ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.... ++++.++.|++||+.+++.+..+
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~---~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY---VTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE---EEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE---EEECCCCEEEEEECCCCeEEEEE
Confidence 5799999876 677789999999999999998887665 899999999654321 22667899999999999988888
Q ss_pred CCCCCeeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCccc
Q 035621 81 PVPEPVAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 158 (387)
.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+
T Consensus 113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~---- 187 (391)
T 1l0q_A 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT---- 187 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET----
T ss_pred eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC----
Confidence 888889999999999977 67888999999999999988888765 457999999999877 57788999999999
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET 235 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 235 (387)
........+ .+...+.+++|+|++ +++++++ .++.|++||+.+++.+..+..+..+.+++|+|+++
T Consensus 188 --------~~~~~~~~~-~~~~~~~~~~~~~~g--~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 256 (391)
T 1l0q_A 188 --------VTNSVIDTV-KVEAAPSGIAVNPEG--TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256 (391)
T ss_dssp --------TTTEEEEEE-ECSSEEEEEEECTTS--SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred --------CCCeEEEEE-ecCCCccceEECCCC--CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCC
Confidence 344444444 356678899999875 7777776 68999999999999999988777899999999999
Q ss_pred eE-EEEccCCcEEEEeccccccccccccc-e-------eEeecccccccEEEEEEecCC----------CEEEEEeCCCc
Q 035621 236 DF-FAAGSDGLIYKGLLKYQSRQQMHKGQ-E-------LVTLANRHDGVVVSVMMMNEG----------KNLVSAAEDGS 296 (387)
Q Consensus 236 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-~-------~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~ 296 (387)
++ ++++.|+.|++||+.++......... . +.....++..+ ...|+.+. ..+...+.|..
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~fs~~~~~~~~~~~~~~~~~~~~~~~~ 334 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYP--SADFKSNITSGYIFLSEPVQFTDLSKDAT 334 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCC--BCCEEESCCSSEEETTCCEEEEECCBSCS
T ss_pred EEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccc--ccccccccccccccccceEEEEeCCCCce
Confidence 88 55678999999999875432211100 0 00000000111 12232221 34566677889
Q ss_pred EEEEECCCccE
Q 035621 297 VYIWEIEKRQV 307 (387)
Q Consensus 297 i~iwd~~~~~~ 307 (387)
+++|++.++..
T Consensus 335 ~~~W~~~~g~~ 345 (391)
T 1l0q_A 335 EWKWDFGDGSS 345 (391)
T ss_dssp EEEEECSSSCE
T ss_pred EEEEECCCCcc
Confidence 99999988875
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=4.9e-31 Score=233.87 Aligned_cols=296 Identities=12% Similarity=0.078 Sum_probs=221.2
Q ss_pred cccCCCc-EEEeeC----CCC----cEEEEeC--CCCcee--EeccCCCCCceeEEEcCcc----------ceeeecccc
Q 035621 3 HHLPCNE-VILTSS----PEG----PITAYNP--SSGAIL--AHFSGSRSPRRGLTFAGKP----------FIAASHISP 59 (387)
Q Consensus 3 ~~s~~~~-~l~~~~----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~----------~~~~~~~~~ 59 (387)
+|++.|. ++++|+ .+| .|++||+ .+++.+ ..+.+|...+..+++.+.. ......++.
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~ 148 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 148 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEE
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEE
Confidence 4667764 566775 567 8999999 899877 4588888888877776410 000111211
Q ss_pred CCC---C---CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC---cEEEEeCCCCceeEEccCCCCCeEE
Q 035621 60 TTG---S---GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG---NVYAISVPKGDILRSFSAHDKPVSC 130 (387)
Q Consensus 60 ~~~---d---~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~ 130 (387)
++. + +.|++||+..+.......+...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+
T Consensus 149 ~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 149 VVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred EEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 222 2 799999997655444445778999999999999999998775 9999999998875 46678889999
Q ss_pred EEEcCCCCEEE-EEeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--c
Q 035621 131 LKISPDGSLLI-SGGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--T 204 (387)
Q Consensus 131 ~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~ 204 (387)
++|+|+|++|+ +++.++. |++||+. .. ....+..|...+.+++|+|++ +.|++++. ++ .
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~------------~~-~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLA------------SG-QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQ 292 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETT------------TC-CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECC------------CC-CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcE
Confidence 99999999877 6666655 9999982 22 235677788899999999985 77777775 44 6
Q ss_pred EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 205 CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
|.+||+.+++......+...+.+++|+|+|++|++++.+ ..|++||+.++.. ..+ ..+. .+.+++|
T Consensus 293 i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------~~l-~~~~-~~~~~~~ 361 (415)
T 2hqs_A 293 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------QVL-SSTF-LDETPSL 361 (415)
T ss_dssp EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------EEC-CCSS-SCEEEEE
T ss_pred EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------EEe-cCCC-CcCCeEE
Confidence 888899888754333356788899999999999988764 5899999987321 122 2343 7899999
Q ss_pred ecCCCEEEEEeCCC---cEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 282 MNEGKNLVSAAEDG---SVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 282 s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+|+|++|++++.++ .|++||+. ++.+..+..+ .+.|.+++|++-
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~ 408 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPY 408 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCccccc
Confidence 99999999988877 79999987 4455667655 568988888764
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=2.9e-29 Score=229.06 Aligned_cols=307 Identities=9% Similarity=0.032 Sum_probs=221.5
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc--cCCCccccc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL--WSSTPLHNI 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~--~~~~~~~~~ 80 (387)
.|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++.++.. ++.|+.|.+||+ .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v----~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLV----IGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEE----EETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEE----ECCCCeEEEEECcCCCCcEEEEE
Confidence 5789999999999999999999999999999984433 889999997654443 677899999999 788888888
Q ss_pred CCCCCeeeEEecc----CCCEEEEec-CCCcEEEEeCCCCceeEEccCC-----------CCCeEEEEEcCCCC-EEEEE
Q 035621 81 PVPEPVAPLATTA----DGSYLFTGG-LSGNVYAISVPKGDILRSFSAH-----------DKPVSCLKISPDGS-LLISG 143 (387)
Q Consensus 81 ~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~-~l~~~ 143 (387)
.....+..++|+| +|+++++++ .+++|.+||..+++++..+..+ ...+..+.++|++. ++++.
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 8878899999999 999999987 4899999999998887766531 12455666666443 33444
Q ss_pred eCCCcEEEEeCCcccccC-------CCC----CC---------------------CCccceEeeec----cCCCeEEEEE
Q 035621 144 GDDGVIATVPIFQLVDEH-------TDD----KN---------------------PDDLMLQKFVA----HNDSVTAITC 187 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~-------~~~----~~---------------------~~~~~~~~~~~----~~~~i~~~~~ 187 (387)
..++.|.+||+....... ... .. .+.+.+..+.. |.+....+ +
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~ 377 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V 377 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence 455566666553210000 000 00 23333343432 43333222 3
Q ss_pred eeCCCCceEEEEe-CCCcEEEEeCCC-------CcEEEEEec-CCceeEEEeCCCCCeEEEEc-------cCCcEEEEec
Q 035621 188 CIGSFNSIIISCS-MDCTCKFWRLLN-------GTHLSTVTF-PCAIMGLALDPTETDFFAAG-------SDGLIYKGLL 251 (387)
Q Consensus 188 ~~~~~~~~l~s~~-~d~~i~iwd~~~-------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~ 251 (387)
+|+. +.+++++. .|++|.+||+.+ +++++++.. ...+..++++|++++|++++ .++.|.+||+
T Consensus 378 ~p~~-g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 378 HPKY-GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp ETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCC-ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 4543 46777776 589999999998 889999984 56788999999999999987 3789999999
Q ss_pred cccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEe-----CCCcEEEEECCCccEEEEeecccCCCcee
Q 035621 252 KYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAA-----EDGSVYIWEIEKRQVVMVLKNELAGSISE 321 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 321 (387)
.+..... ..... +..+...+..+.|+|+|+.++++. .|+.|.|||.++++++..++......+++
T Consensus 457 ~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g 531 (543)
T 1nir_A 457 KNLDAKY-----QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 531 (543)
T ss_dssp TCTTSCC-----EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEE
T ss_pred CCCCCCe-----EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCe
Confidence 9854320 11100 124577899999999999888652 47999999999999999998654434443
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.5e-29 Score=210.69 Aligned_cols=207 Identities=14% Similarity=0.102 Sum_probs=152.1
Q ss_pred ccccCC----CcEEEeeCCCCcEEEEeCCCCceeEe-ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCC
Q 035621 2 LHHLPC----NEVILTSSPEGPITAYNPSSGAILAH-FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSST 75 (387)
Q Consensus 2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~ 75 (387)
|+|+|| +..+++++. .+.+|++.+++.+.. ..+| |+.|++|++ .+++
T Consensus 117 la~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~-------------------------d~~V~~~~~s~dG~ 169 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLS-------------------------DQQVEVMTFAEDGG 169 (356)
T ss_dssp ECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSST-------------------------TCEEEEEEECTTSC
T ss_pred EEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCC-------------------------CCcEEEEEECCCCc
Confidence 678999 888888774 488888876666554 3444 455555555 2233
Q ss_pred ccccc-CCCCCeeeEEecc---CCCEEEEecCCCcEEEEeCCCCceeEEccCCC---CCeEEEEEcCCCCEE--------
Q 035621 76 PLHNI-PVPEPVAPLATTA---DGSYLFTGGLSGNVYAISVPKGDILRSFSAHD---KPVSCLKISPDGSLL-------- 140 (387)
Q Consensus 76 ~~~~~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l-------- 140 (387)
.+..+ .|...+..++|++ ++.+|++++.|++|++||++++++++++.+|. ..+.+++|+|++.++
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence 33332 3667788889998 77999999999999999999999999998654 467888999999876
Q ss_pred ----EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621 141 ----ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL 211 (387)
Q Consensus 141 ----~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 211 (387)
++|+.|++|++||. .....+..+ .+|...+.+..+ + +.++++++.|++|+|||+.
T Consensus 250 ~w~laSGs~D~tIklWd~------------~tgk~l~v~~~~~p~Gh~~~~lsg~~--s--g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 250 KESESLRSPVFQLIVINP------------KTTLSVGVMLYCLPPGQAGRFLEGDV--K--DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp --------CCEEEEEEET------------TTTEEEEEEEECCCTTCCCCEEEEEE--E--TTEEEEEETTSCEEEEETT
T ss_pred cceeeccCCCcEEEEEEC------------CCCEEEEEEEeeccCCCcceeEcccc--C--CCEEEEEcCCCcEEEEECC
Confidence 56788999999998 344444433 255555443333 2 4789999999999999999
Q ss_pred CCcEEEEEe-cCCce-eEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 212 NGTHLSTVT-FPCAI-MGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 212 ~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
+++++.++. |...+ .+++|+|+|++|++|+.|++|++||+
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999997 44444 46899999999999999999999985
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=3.2e-28 Score=232.46 Aligned_cols=294 Identities=9% Similarity=0.008 Sum_probs=217.8
Q ss_pred ccccCCCcEEEeeCC-CC-----cEEEEeCCCCceeEeccCCCC------------------------CceeEEEcCccc
Q 035621 2 LHHLPCNEVILTSSP-EG-----PITAYNPSSGAILAHFSGSRS------------------------PRRGLTFAGKPF 51 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~ 51 (387)
++|||||++|++++. |+ .|++||+.+++....+..+.. .+.+++|+|++.
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 579999999999988 88 899999999987766654433 388999999776
Q ss_pred eeeeccccCCCCCeEEEEEccCC---CcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-
Q 035621 52 IAASHISPTTGSGSVHLYNLWSS---TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP- 127 (387)
Q Consensus 52 ~~~~~~~~~~~d~~v~vw~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 127 (387)
.++. ++ ++.|.+||+.++ +......+...+..++|+|||++|++++ ++.|++||+.+++.......+...
T Consensus 122 ~l~~----~~-~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~ 195 (741)
T 2ecf_A 122 RLLF----PL-GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTI 195 (741)
T ss_dssp EEEE----EE-TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSE
T ss_pred EEEE----Ee-CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccce
Confidence 5443 33 399999999988 5555555667899999999999999887 568999999988776555444332
Q ss_pred ---------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEeCCcccc
Q 035621 128 ---------------VSCLKISPDGSLLISGGDDG---------------------------------VIATVPIFQLVD 159 (387)
Q Consensus 128 ---------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~~~~~ 159 (387)
+.+++|+|||++|++++.|+ .|.+||+.
T Consensus 196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---- 271 (741)
T 2ecf_A 196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA---- 271 (741)
T ss_dssp EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS----
T ss_pred eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC----
Confidence 47899999999999988765 78888872
Q ss_pred cCCCCCCCC-ccceEeee--ccCCCeEEEEEeeCCCCceEEEEeC-----CCcEEEEeCCCCcEEEEEecCC-----cee
Q 035621 160 EHTDDKNPD-DLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSM-----DCTCKFWRLLNGTHLSTVTFPC-----AIM 226 (387)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~v~ 226 (387)
. ........ .|...+..++| |++ +.|+.++. +..|++||+.+++....+.... .+.
T Consensus 272 --------~~~~~~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 272 --------EQAQTQWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp --------TTCCCEEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred --------CCCceEEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 2 22222221 47778999999 986 77776543 5689999999998777665322 456
Q ss_pred EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEE-EeCCC--cEEEEEC
Q 035621 227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVS-AAEDG--SVYIWEI 302 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~i~iwd~ 302 (387)
.++|+|||+++++++.+|.+.+|.+... +. ...+..|...+..+ .|+|+++.|+. ++.++ .++||++
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~-------~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSK-------GK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSS-------SC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCC-------CC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 8999999998888999998888877631 12 22234567778887 59999997764 55555 8999998
Q ss_pred CC-ccEEEEeecccCCCceeEEEEec
Q 035621 303 EK-RQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 303 ~~-~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.. ++.+..+.. ...+..+.|++.
T Consensus 412 ~~~g~~~~~l~~--~~~~~~~~~spd 435 (741)
T 2ecf_A 412 PLQGGQPQRLSK--APGMHSASFARN 435 (741)
T ss_dssp ETTCCCCEECCC--SCSEEEEEECTT
T ss_pred EcCCCCeeeccc--CCCceEEEECCC
Confidence 74 555666654 335666666653
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=1.1e-27 Score=206.52 Aligned_cols=290 Identities=11% Similarity=0.019 Sum_probs=205.1
Q ss_pred cccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-cccc
Q 035621 3 HHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHNI 80 (387)
Q Consensus 3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~~ 80 (387)
.|.++++ .+++++.++.|.+||..+++....+..+...+ .++|+|++.... +++..++.|.+||+.+++. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~---~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVV---VTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEE---EEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEE---EEeCCCCeEEEEECCCCceeEEec
Confidence 3555554 57788889999999999999988887766667 999999764221 2245588999999999887 6666
Q ss_pred CCCCCeee-EEeccCCCEEEEecCCC---cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCc-EEEEeC
Q 035621 81 PVPEPVAP-LATTADGSYLFTGGLSG---NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGV-IATVPI 154 (387)
Q Consensus 81 ~~~~~v~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~ 154 (387)
........ ++|+|+|++++++..++ .|.+||+.+++.+..+.. .....+++|+|++++++++ ..++. |.+|++
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 65554555 99999999999665553 899999999998887764 4456999999999865555 55588 999998
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCCCcE---EEEEecCCceeEEEe
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLNGTH---LSTVTFPCAIMGLAL 230 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~ 230 (387)
...... .... ............++|+|++ + +++++..++.|.+||+.+++. +..+.....+..++|
T Consensus 159 ~~~g~~-------~~~~-~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
T 3u4y_A 159 DADGVL-------FDTG-QEFISGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV 228 (331)
T ss_dssp CTTCCE-------EEEE-EEEECSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEE
T ss_pred CCCCcE-------eecC-CccccCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEE
Confidence 421000 0000 1222344567899999885 5 455566789999999999988 888887888899999
Q ss_pred CCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccE
Q 035621 231 DPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQV 307 (387)
Q Consensus 231 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~ 307 (387)
+|+|+++++++. ++.|.+||..++........................++|+|++++|++++ .++.|.+||+.....
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 999998877654 78899999987543111000000000011112235689999999886555 566999999987554
No 131
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=1e-26 Score=200.80 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=204.7
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCC--CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRS--PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE-- 84 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~-- 84 (387)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|++... ++++..++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l---~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA---YATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE---EEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEE---EEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5789999999999999999998887763332 47899999976322 1225678999999999998877666544
Q ss_pred ----CeeeEEeccCCCEEEEec------------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 85 ----PVAPLATTADGSYLFTGG------------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 85 ----~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
.+..++|+|+|++++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence 788999999999998885 579999999999888777764 4567889999999988887 689
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEe-CCC----------------------
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCS-MDC---------------------- 203 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~-~d~---------------------- 203 (387)
|.+||+ ........+..+. .+ +.|+|++ ..++..+ .++
T Consensus 156 i~~~d~------------~~~~~~~~~~~~~~~~~---~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 156 LHVMDP------------EAGTLVEDKPIQSWEAE---TYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp EEEEET------------TTTEEEEEECSTTTTTT---TBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred EEEEEC------------CCCcEeeeeeccccCCC---ceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccc
Confidence 999999 3334444443332 22 2556664 3333322 222
Q ss_pred -cEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 204 -TCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 204 -~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
.|.+||+.+++.. .+. +...+.+++|+|++++++++ ++.|++||+.+.. ..... .....+.++
T Consensus 219 ~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--------~~~~~--~~~~~~~~~ 285 (337)
T 1pby_B 219 TGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--------SIKRV--PLPHSYYSV 285 (337)
T ss_dssp EEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--------EEEEE--ECSSCCCEE
T ss_pred cceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--------Cccee--cCCCceeeE
Confidence 4789999998875 332 45678899999999999988 7999999997632 22222 123457899
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 280 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
+|+|+|++|++++.++.|++||+.+++.+..+...
T Consensus 286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99999999999999999999999999999888754
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=8.8e-27 Score=206.55 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=191.4
Q ss_pred CcEEEeeCCC------CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC---CeEEEEEccCCCccc
Q 035621 8 NEVILTSSPE------GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS---GSVHLYNLWSSTPLH 78 (387)
Q Consensus 8 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d---~~v~vw~~~~~~~~~ 78 (387)
+..++.++.+ +.|++||+. +.....+.+|...+.+++|+|++...+. ++.+ ..|++||+.+++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~----~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAY----VTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEE----EECTTSSCEEEEEETTTCCEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEE----EEecCCCcEEEEEECCCCcEEE
Confidence 5566665543 799999986 5556778889999999999997654433 4555 499999999998876
Q ss_pred ccCCCCCeeeEEeccCCCEEE-EecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEE
Q 035621 79 NIPVPEPVAPLATTADGSYLF-TGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATV 152 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iw 152 (387)
...+...+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|++++|++++. ++ .|++|
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 666778899999999999888 666555 499999988876 567778889999999999998888876 45 57777
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLA 229 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~ 229 (387)
|+. .. ....+..+...+.+++|+|++ ++|++++.+ ..|++||+.+++.. .+.....+.+++
T Consensus 297 d~~------------~~-~~~~l~~~~~~~~~~~~spdG--~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~ 360 (415)
T 2hqs_A 297 NIN------------GG-APQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS 360 (415)
T ss_dssp ETT------------SS-CCEECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred ECC------------CC-CEEEEecCCCcccCeEECCCC--CEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeE
Confidence 872 22 234455567788899999985 778777764 58999999988764 344344899999
Q ss_pred eCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 230 LDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
|+|+|++|+.++.++ .|++||+... . ...+..|.+.|.+++|+|...
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~---------~-~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTDGR---------F-KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTSC---------C-EEECCCSSSEEEEEEECCCCC
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECCCC---------c-EEEeeCCCCCCcCCccccccc
Confidence 999999999988876 7999998642 2 223347889999999999754
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=3.9e-27 Score=224.33 Aligned_cols=303 Identities=11% Similarity=0.062 Sum_probs=207.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeecccc-----CCCCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISP-----TTGSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~-----~~~d~~v~vw~~~~ 73 (387)
++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|++..++..... .+.++.+.+||+.+
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999997776 6889999999999998888877765 49999999987654431110 12248899999998
Q ss_pred CCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe------------------EEEE
Q 035621 74 STPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV------------------SCLK 132 (387)
Q Consensus 74 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------------------~~~~ 132 (387)
++...... +...+..++|+|||+.|+.++. +.|++||+.+++.......+...+ .+++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 87622222 2234889999999999999875 789999999888766655444333 7899
Q ss_pred EcCCCCEEEEEeCCC----------------------------------cEEEEeCCcccccCCCCCCCCccceEeeec-
Q 035621 133 ISPDGSLLISGGDDG----------------------------------VIATVPIFQLVDEHTDDKNPDDLMLQKFVA- 177 (387)
Q Consensus 133 ~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 177 (387)
|+|||++|++++.|+ .|++||+. .......+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~------------~~~~~~~l~~~ 247 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN------------GPTHDLEMMPP 247 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS------------SSCCCEECCCC
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC------------CCceeEEeeCC
Confidence 999999999887653 67888872 2222233333
Q ss_pred -----cCCCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCcEEEEEe--cCCce----eEEEeCCCCCeEEEE--
Q 035621 178 -----HNDSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGTHLSTVT--FPCAI----MGLALDPTETDFFAA-- 240 (387)
Q Consensus 178 -----~~~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~l~~~-- 240 (387)
+...+..++|+|++ +++++.+. +..|++||+.+++....+. +...+ ..++|+|||+.|+..
T Consensus 248 ~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCGGGSSEEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred ccCCCccceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 35678899999985 77766643 3579999999998766654 22333 378999999988764
Q ss_pred ccCC------cEEEEec-cccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCC---CcEEEEECCCcc--E
Q 035621 241 GSDG------LIYKGLL-KYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAED---GSVYIWEIEKRQ--V 307 (387)
Q Consensus 241 ~~dg------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~--~ 307 (387)
..++ .|++||. ..+... ....+. .+...+. .++|+|||+.|+..+.+ +.+++|++.... .
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~------~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSND------NIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSC------CCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred cccCCCcceeEEEEEeccCCCCcc------ceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 3466 4666663 321100 011111 2233344 46999999999766555 789999986532 3
Q ss_pred EEEeecc--cCCCceeEEEEec
Q 035621 308 VMVLKNE--LAGSISEMVIATG 327 (387)
Q Consensus 308 ~~~~~~~--~~~~v~~~~~~~~ 327 (387)
...+... +.+.+..+.|++.
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHS 420 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTT
T ss_pred cceecccccCCCCeEEEEECCC
Confidence 3344431 2345677777764
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=6.4e-26 Score=197.14 Aligned_cols=265 Identities=12% Similarity=0.129 Sum_probs=204.9
Q ss_pred ccccCCCcEEEeeCC-------CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621 2 LHHLPCNEVILTSSP-------EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|++... +++...++.|.+||..++
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l---~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTL---WFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEE---EEEETTTTEEEEEETTTC
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEE---EEEecCCCEEEEEeCCCC
Confidence 578999988887763 568999999999988888643 447889999965421 122567899999999999
Q ss_pred CcccccCCCC----------CeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621 75 TPLHNIPVPE----------PVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 75 ~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
+.+..+.... .+.+++|+|+++++++++ .++.|.+||+.+++.+..+..+...+.+++|+|+++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence 8877665432 268899999999888776 4788999999999998888756667899999999999999
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcEEE
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTHLS 217 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~ 217 (387)
++.++.|.+||+ ........+.. +...+..++++|++ ++++. ...++.|.+||+.+++.+.
T Consensus 202 ~~~~~~i~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 202 TNADGELITIDT------------ADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp ECTTSEEEEEET------------TTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEE
T ss_pred EcCCCeEEEEEC------------CCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEE
Confidence 999999999998 44444544443 45567889999986 54444 4456999999999999988
Q ss_pred EEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 218 TVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
.+..... ..++|+|+++++++++ .++.|.+||..+.. ....+ .....+.+++|+|+|++|+.+..++
T Consensus 268 ~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 268 KVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK--------VVKTF--DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEE--ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCe--------EEEEE--ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 8876554 6799999999776665 68999999998732 22222 1234679999999999777766554
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=5.7e-26 Score=196.59 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=196.7
Q ss_pred cEEEeeCCCCcEEEEeCC-CC--ceeEeccCCCCCceeEEEcCccceeeeccccCCC-CCeEEEEEcc--CCC--ccccc
Q 035621 9 EVILTSSPEGPITAYNPS-SG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLW--SST--PLHNI 80 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~--~~~--~~~~~ 80 (387)
.++++++.++.|++||+. ++ +.+..+ .+...+.+++|+|++..+.. ++. ++.|.+|++. +++ .+..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~----~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYV----GVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEE----EETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEE----eecCCCeEEEEEecCCCCceeecccc
Confidence 345555789999999985 34 333333 46777999999997653322 334 4999999997 454 33344
Q ss_pred CCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCC---CCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 035621 81 PVPEPVAPLATTADGSYLFTGGL-SGNVYAISVP---KGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIF 155 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 155 (387)
.....+..++|+|++++|++++. ++.|.+||+. ..+.+..+.. ...+.+++|+|+++++++++ .++.|++||+.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 44558899999999998876654 7889999994 3344555543 34688999999999888877 89999999993
Q ss_pred cccccCCCCCCCCccce--E--eeec-cCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCC--CcE--EEEEe-c---
Q 035621 156 QLVDEHTDDKNPDDLML--Q--KFVA-HNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLN--GTH--LSTVT-F--- 221 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~--~~~~-~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~-~--- 221 (387)
. ..... . .... ....+..++|+|++ +++ +++..++.|.+||+.. ++. ...+. .
T Consensus 160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 160 D-----------DGHLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp T-----------TSCEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred C-----------CCceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 2 02111 1 2222 33477889999885 655 4555889999999953 432 22332 1
Q ss_pred ---CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCc
Q 035621 222 ---PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGS 296 (387)
Q Consensus 222 ---~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~ 296 (387)
...+..++|+|++++|+++. .++.|.+|++...... .........+. .+..++|+|+|++|++++ .++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCE
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCC-ccceEEECCCCCEEEEecCCCCe
Confidence 23566899999999887554 6899999999731110 11111122233 388999999999888877 6899
Q ss_pred EEEEE--CCCccE--EEEeecccCCCceeEEEEecC
Q 035621 297 VYIWE--IEKRQV--VMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 297 i~iwd--~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 328 (387)
|.+|+ ..++++ +..+.. ...+.+++|.+..
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC
T ss_pred EEEEEEcCCCceeeEcccccc--CCCCeeEEEEccc
Confidence 99995 446644 333332 3456677766533
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1e-25 Score=213.87 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=203.0
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCcee-EeccCCC-----------------CCceeEEEcCccceeeeccccCCCC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL-AHFSGSR-----------------SPRRGLTFAGKPFIAASHISPTTGS 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~~~d 63 (387)
+.|+ |+.+++++.++ | +||+.+++.+ ..+..|. ..|.+++|+|+..+... .+
T Consensus 31 ~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~------~~ 100 (706)
T 2z3z_A 31 LQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF------TQ 100 (706)
T ss_dssp CEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE------ET
T ss_pred CcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE------EC
Confidence 3566 55667777777 8 9999999873 3333332 56999999998444432 45
Q ss_pred CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-----CceeEEccCCCCC-----------
Q 035621 64 GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-----GDILRSFSAHDKP----------- 127 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~----------- 127 (387)
+.+++||+.+++......+...+..++|+|||++|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999999988776666677789999999999999985 679999999988 7766544443332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEeCCcccccCCCCCCCCccc
Q 035621 128 ---VSCLKISPDGSLLISGG---------------------------------DDGVIATVPIFQLVDEHTDDKNPDDLM 171 (387)
Q Consensus 128 ---v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 171 (387)
+.+++|+|||++|++++ .+..|++||+. ....
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~------------~~~~ 247 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA------------TGKT 247 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT------------TTEE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC------------CCce
Confidence 48999999999999987 44679999983 2222
Q ss_pred eEee--eccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEEEEe---cCC---ceeEEEeCC--CCCe
Q 035621 172 LQKF--VAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLSTVT---FPC---AIMGLALDP--TETD 236 (387)
Q Consensus 172 ~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~~~---~v~~~~~~~--~~~~ 236 (387)
.... ..|...+..++|+|++ +.|++++.++ .|++||+.+++....+. ... .+..++|+| +|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred EeeccCCCCceeEeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 2221 2466789999999985 7888877765 89999999984443332 222 246789999 9999
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEEEEeC-CC----cEEEEECCCccEEEE
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAE-DG----SVYIWEIEKRQVVMV 310 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~ 310 (387)
++++..++.+.+|++... +.... .+..|...+.. ++|+|+++.|+.++. ++ .|..||+.+++ +..
T Consensus 326 l~~~~~~g~~~l~~~~~~-------~~~~~-~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~ 396 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTT-------GRLIR-QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD 396 (706)
T ss_dssp EEEECTTSSCEEEEEETT-------SCEEE-ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE
T ss_pred EEEEccCCccEEEEEECC-------CCEEE-ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee
Confidence 999999999999988631 12222 22356667776 799999998765544 44 67777887776 334
Q ss_pred eecccCCCceeEEEEec
Q 035621 311 LKNELAGSISEMVIATG 327 (387)
Q Consensus 311 ~~~~~~~~v~~~~~~~~ 327 (387)
+. + ...+..+.|++.
T Consensus 397 l~-~-~~~~~~~~~spd 411 (706)
T 2z3z_A 397 LT-P-ESGMHRTQLSPD 411 (706)
T ss_dssp SC-C-SSSEEEEEECTT
T ss_pred cc-C-CCceEEEEECCC
Confidence 43 2 335667777653
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=6.7e-25 Score=208.36 Aligned_cols=272 Identities=12% Similarity=0.082 Sum_probs=198.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-----CCc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-----STP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-----~~~ 76 (387)
++|||| +.++.+. ++.|++||+.+++... +..+...+.+++|+|++...+. ..++.|++|++.+ ++.
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~-----~~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAY-----VRNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEE-----EETTEEEEEECBCTTSCCCCC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEE-----EECCeEEEEecCcccccCCCc
Confidence 579999 5555543 5999999998887654 4456777999999997755443 3679999999998 776
Q ss_pred ccccCCCCC---------------eeeEEeccCCCEEEEec---------------------------------CCCcEE
Q 035621 77 LHNIPVPEP---------------VAPLATTADGSYLFTGG---------------------------------LSGNVY 108 (387)
Q Consensus 77 ~~~~~~~~~---------------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~ 108 (387)
......... +.++.|+|||++|++++ .+..|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 654443322 58999999999999987 346799
Q ss_pred EEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeee--ccC
Q 035621 109 AISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHN 179 (387)
Q Consensus 109 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~ 179 (387)
+||+.+++...... .|...+.+++|+|||++|++++.++ .|++||+. .+.....+. .+.
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~------------~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE------------TGRFVRTLFVETDK 306 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT------------TCCEEEEEEEEECS
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC------------CCceeeEEEEccCC
Confidence 99999887654432 4667899999999999999988776 89999983 331222221 122
Q ss_pred C---CeEEEEEee--CCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeE-EEeCCCCCeEEEEcc-CC----cE
Q 035621 180 D---SVTAITCCI--GSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMG-LALDPTETDFFAAGS-DG----LI 246 (387)
Q Consensus 180 ~---~i~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~-dg----~i 246 (387)
. .+..++|+| ++ +++++++.|+.+++|++. ++..+..+. +...+.. ++|+|+++.|+.++. ++ .|
T Consensus 307 ~~~~~~~~~~~sp~~dg--~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNN--QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp SCCCCCSCCEECTTCSS--EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred CeECccCCceeecCCCC--EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 2 246788998 64 799999999999999886 566666665 4455666 799999998876655 44 55
Q ss_pred EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCcc
Q 035621 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKRQ 306 (387)
Q Consensus 247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 306 (387)
+.||...+. ...+ .|...+.+++|+|||++|+..+.+ +.|++||+.+++
T Consensus 385 ~~~d~~~~~---------~~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGGK---------TKDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCCC---------CEES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEcCCCC---------ceec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 556655421 1111 256678999999999988876443 469999999887
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.4e-25 Score=189.91 Aligned_cols=254 Identities=13% Similarity=0.053 Sum_probs=189.3
Q ss_pred eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCCC--CCeeeEE
Q 035621 14 SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPVP--EPVAPLA 90 (387)
Q Consensus 14 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~~--~~v~~~~ 90 (387)
++.++.|++||+.+++... +..|...+.+++|+|++...+. + .++.|.+||+.+ ++........ ..+.+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~----~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLL----N-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEE----E-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEE----E-cCCeEEEEeCCCCCCceEeccccccccccceE
Confidence 4678999999999887664 4558889999999997665543 3 488999999998 7776655433 6789999
Q ss_pred eccCCCEEEEec--CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCcccccCCCCC
Q 035621 91 TTADGSYLFTGG--LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 91 ~~~~~~~l~~~~--~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 165 (387)
|+|++++|++++ .++ .|..++..+++ ...+..+ ..+..++|+|++++|+ +++.++.+++|++..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~--------- 160 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI--------- 160 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET---------
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC---------
Confidence 999999999988 333 45555555555 3444433 3489999999999877 778899999998621
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
.......+..+...+.+++|+|++ +.++.++ .++.+++|++. .+.....+. +...+..++|+|++++|++++.
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 161 --DSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp --TTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred --CCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 222345566778889999999885 6666555 58999999886 455555554 5567889999999999998877
Q ss_pred C-----------CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 243 D-----------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 243 d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
+ +.|++||+..+.. ........|...+..++|+|++++|++++.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5 5699999876421 11112235778899999999999998877654
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=3.1e-25 Score=218.88 Aligned_cols=291 Identities=9% Similarity=0.054 Sum_probs=213.5
Q ss_pred ccccCCCcEEEeeCCC------CcEEEEeCCCCceeE-------------------------------------------
Q 035621 2 LHHLPCNEVILTSSPE------GPITAYNPSSGAILA------------------------------------------- 32 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~------------------------------------------- 32 (387)
++|||||+++++++.+ ..|++|++.+++...
T Consensus 112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 5799999977777754 357778876554321
Q ss_pred ------eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCCCCCeeeEEeccCCCEEEEecCCC
Q 035621 33 ------HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPVPEPVAPLATTADGSYLFTGGLSG 105 (387)
Q Consensus 33 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 105 (387)
.+.+|...+.++.|+++..+ ++++.++.+.+|.+.. +.....+.....+...+|+|+|+.|+.+ .++
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d~l~-----~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~ 265 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGHRIY-----FITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG 265 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETTEEE-----EEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred CCCCeEECcCCCCcccceEEeCCEEE-----EEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence 12345566777777776322 2256788889998754 4444445444557778999999999887 589
Q ss_pred cEEEEeCCCCceeEEccC-----------CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621 106 NVYAISVPKGDILRSFSA-----------HDKPVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
.|++||+...+ +..+.. |...+.+++|+ |+|+++++++ ++.|.+|++. .. ...
T Consensus 266 ~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~------------~~-~~~ 330 (1045)
T 1k32_A 266 SIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS------------GT-YVL 330 (1045)
T ss_dssp EEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT------------SS-BEE
T ss_pred EEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC------------CC-ceE
Confidence 99999995444 445554 33468999999 9999998887 7899999982 22 233
Q ss_pred eeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEE-EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 174 KFVAHND-SVTAITCCIGSFNSIIISCSMDCTCK-FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 174 ~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
.+..|.. .+..++|+ + ++.|++++.++.+. +||+.+++......+...+..++|+|+|++|++++.++.|++||+
T Consensus 331 ~~~~~~~~~~~~~~~s-d--g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~ 407 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-T--KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407 (1045)
T ss_dssp ECSCCSCEEEEEECSS-S--EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EccCCCcceEEeeeEc-C--CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence 4556666 88889888 5 58888888888888 999988765443345578999999999999999999999999999
Q ss_pred cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC----------cEEEEECCCccEEEEeecccCCCcee
Q 035621 252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG----------SVYIWEIEKRQVVMVLKNELAGSISE 321 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~v~~ 321 (387)
.++. .......|...+.+++|+|||++|++++.++ .|++||+.+++ +..+..+. ..+..
T Consensus 408 ~tg~---------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~-~~~~~ 476 (1045)
T 1k32_A 408 ETGK---------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN-SHDYA 476 (1045)
T ss_dssp TTCC---------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS-SBEEE
T ss_pred CCCc---------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC-cccCC
Confidence 8732 2233336888899999999999999887654 89999999987 55565553 35666
Q ss_pred EEEEec
Q 035621 322 MVIATG 327 (387)
Q Consensus 322 ~~~~~~ 327 (387)
+.|++.
T Consensus 477 ~~~spd 482 (1045)
T 1k32_A 477 PAFDAD 482 (1045)
T ss_dssp EEECTT
T ss_pred ceEcCC
Confidence 666543
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=4.8e-25 Score=186.50 Aligned_cols=244 Identities=12% Similarity=0.063 Sum_probs=182.3
Q ss_pred CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-CceeEEccCC-CCCeEEEEEcCCC
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDILRSFSAH-DKPVSCLKISPDG 137 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~v~~~~~~~~~ 137 (387)
.+.++.|++||+.+++......+...+.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 5688999999999988877777888999999999999999986 78999999998 8877666555 3678999999999
Q ss_pred CEEEEEe--CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeC--CC
Q 035621 138 SLLISGG--DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRL--LN 212 (387)
Q Consensus 138 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~--~~ 212 (387)
++|++++ .++...+|.+.. .. .....+..+ ..+..++|+|++ +.|+ +++.++.+++|++ .+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~----------~~-~~~~~~~~~-~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPS----------TG-GTPRLMTKN-LPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEET----------TC-CCCEECCSS-SSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEeCCCCcceEEEEEC----------CC-CceEEeecC-CCccceEECCCC--CEEEEEECCCCceEEEEEECCC
Confidence 9999998 445566665521 11 122333333 348889999885 5555 7888999999985 44
Q ss_pred CcEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 213 GTHLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
++......+...+.+++|+|+++++++++ .++.+.+|++.... ... ..+..|...+..++|+|++++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------~~~-~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------SSV-ERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------SCE-EECCCCSEEEEEEEECTTSSEEEEE
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------CCc-EEEecCCcccCCeEECCCCCEEEEE
Confidence 44433334667899999999999888766 48999999987421 112 2234567789999999999999988
Q ss_pred eCC-----------CcEEEEECCCccEEEEe--ecccCCCceeEEEEec
Q 035621 292 AED-----------GSVYIWEIEKRQVVMVL--KNELAGSISEMVIATG 327 (387)
Q Consensus 292 ~~d-----------g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~ 327 (387)
+.+ +.|++||+.+++..... ..+ .+.+..+.|++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spd 282 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPD 282 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTT
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCC
Confidence 766 56999999988764433 333 446777777643
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.6e-24 Score=196.41 Aligned_cols=248 Identities=14% Similarity=0.091 Sum_probs=192.1
Q ss_pred EEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEcc
Q 035621 45 TFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFS 122 (387)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~ 122 (387)
+++|+..+. ++++.+++|.+||..+++++..+.....+..++|+|+|++|++++.++.|.+||+ .+++.+..+.
T Consensus 144 ~~~p~~~~~----vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFS----VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEE----EEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEE----EEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 367754433 3478899999999999999988885555899999999999999999999999999 8888888887
Q ss_pred CCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCC-CeEEEE
Q 035621 123 AHDKPVSCLKISP----DGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HND-SVTAIT 186 (387)
Q Consensus 123 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~ 186 (387)
+...+..++|+| +++++++++. +++|.+||. .+.+++..+.. |.. .+..+.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET------------TTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec------------cccccceeecccCcccCccccccCCceEEEE
Confidence 455689999999 9999999884 899999998 44455555543 223 688899
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccc
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQ 263 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 263 (387)
+++++ +.++++...+++|.+||+.+.+.+. .+.+...+..++|+|+|+++++++ .++.|.+||..++.......
T Consensus 287 ~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~-- 363 (543)
T 1nir_A 287 ASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD-- 363 (543)
T ss_dssp ECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred ECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec--
Confidence 99875 4778888889999999998876544 556677788999999999877665 58999999998843221110
Q ss_pred eeEeecccccccEEEEEEecC-CCEEEEEe-CCCcEEEEECCC-------ccEEEEeecccC
Q 035621 264 ELVTLANRHDGVVVSVMMMNE-GKNLVSAA-EDGSVYIWEIEK-------RQVVMVLKNELA 316 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~ 316 (387)
.-...|.+....+ ++|+ +.+++++. .|++|.+||+.+ +++++++..+..
T Consensus 364 ---~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 364 ---VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp ---CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred ---cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 0011355444443 5777 66677775 689999999998 899999998754
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=6e-24 Score=184.35 Aligned_cols=281 Identities=12% Similarity=0.072 Sum_probs=191.1
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++... +++...++.|.+||+.+++....+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~---~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA---YVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE---EEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4688999999999999999999999999888876543 257899999976422 122567899999999998877666
Q ss_pred CCCC-------CeeeEEeccCCCEEEEecCC------------CcEEEEeCCCCce---eEEccCCCCCeEEEEEcCCCC
Q 035621 81 PVPE-------PVAPLATTADGSYLFTGGLS------------GNVYAISVPKGDI---LRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 81 ~~~~-------~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 138 (387)
.... .+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence 5332 37899999999999998865 8999999988543 33333 344688999999999
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC--------------------C----CeEEEEEeeCCCCc
Q 035621 139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--------------------D----SVTAITCCIGSFNS 194 (387)
Q Consensus 139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~----~i~~~~~~~~~~~~ 194 (387)
+++++. .|.+||+.. ......+..+. . ....+++.+++...
T Consensus 161 -l~~~~~--~i~~~d~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKT------------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp -EEEESS--SEEEECTTT------------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred -EEEccC--cEEEEeCCC------------CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 665544 499999832 22222222111 0 12334444332000
Q ss_pred eEEEEeCCCcEEEEeCCCCcEEE-E-EecCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621 195 IIISCSMDCTCKFWRLLNGTHLS-T-VTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR 271 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~~~~~-~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 271 (387)
.........+..+|..+++... . -.....+..++++| ++++++++ ++.|++||+.+.. ....+.
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~--------~~~~~~-- 292 (349)
T 1jmx_B 226 -PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--------LIKAAN-- 292 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE--------EEEEEE--
T ss_pred -ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe--------EEEEEc--
Confidence 0000000112224444443211 0 11456788999999 99999988 8899999998732 222221
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
....+.+++|+|++++|++++.++.|++||+.+++.+..++..
T Consensus 293 ~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 293 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 2335678999999998888888999999999999999888654
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=9.9e-25 Score=208.34 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=200.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~ 79 (387)
++|||||++|++++. +.|++||+.++. ....+..|...+..++|+|++...+. + .++.|++||+.+++....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~----~-~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF----I-RGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE----E-ETTEEEEEETTTTEEEEC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE----E-eCCcEEEEecCCCCEEEe
Confidence 579999999999886 899999998873 45567778888999999998765443 2 356999999988766554
Q ss_pred cCCCCC-----------------eeeEEeccCCCEEEEecCCC---------------------------------cEEE
Q 035621 80 IPVPEP-----------------VAPLATTADGSYLFTGGLSG---------------------------------NVYA 109 (387)
Q Consensus 80 ~~~~~~-----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~i 109 (387)
...... +..++|+|||++|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 443221 47899999999999987665 7899
Q ss_pred EeCCC-CceeEEcc--CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCC-
Q 035621 110 ISVPK-GDILRSFS--AHDKPVSCLKISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND- 180 (387)
Q Consensus 110 ~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 180 (387)
||+.+ ++...... .|...+..++| |||++|++++. +..|++||+ ........+..+..
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------------~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------------ASNQQRVLAHETSPT 334 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------------TTCCEEEEEEEECSS
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------------CCCceEEEEEcCCCC
Confidence 99988 87655443 47778999999 99999987754 567999998 34444444444443
Q ss_pred ---CeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEE-EeCCCCCeEEEE-ccCC--cEEEEec
Q 035621 181 ---SVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGL-ALDPTETDFFAA-GSDG--LIYKGLL 251 (387)
Q Consensus 181 ---~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~-~~~~~~~~l~~~-~~dg--~i~i~d~ 251 (387)
.+..++|+|++ +++++++.|+.+++|.+. ++. ...+. +...+..+ .|+|+++.|+.. +.++ .+++|++
T Consensus 335 ~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 335 WVPLHNSLRFLDDG--SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCCCCSCCEECTTS--CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred cCCcCCceEECCCC--eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 45678999885 688999999988888765 344 55554 45667777 599999987655 4455 8999998
Q ss_pred cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCc
Q 035621 252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKR 305 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~ 305 (387)
.... .....+ . ....+..++|+|||++|+....+ ..+.+|+...+
T Consensus 412 ~~~g-------~~~~~l-~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 412 PLQG-------GQPQRL-S-KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ETTC-------CCCEEC-C-CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EcCC-------CCeeec-c-cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 6521 111222 1 25567899999999988866443 46899997654
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=2.9e-24 Score=211.96 Aligned_cols=297 Identities=13% Similarity=0.094 Sum_probs=218.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-----------CCCCceeEEEc-CccceeeeccccCCCCCeEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-----------SRSPRRGLTFA-GKPFIAASHISPTTGSGSVHLY 69 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~~~~~~d~~v~vw 69 (387)
.+|||||+.|+.+. ++.|++||+...+ +..+.+ |...+.+++|+ |++...+. ++ ++.+.+|
T Consensus 250 ~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~----~~-~~~i~~~ 322 (1045)
T 1k32_A 250 RHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF----VS-RGQAFIQ 322 (1045)
T ss_dssp EEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE----EE-TTEEEEE
T ss_pred eeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE----EE-cCEEEEE
Confidence 47899999999884 7999999995444 445554 33468999999 97654443 23 7899999
Q ss_pred EccCCCcccccCCCC-CeeeEEeccCCCEEEEecCCCcEE-EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621 70 NLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVY-AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
++..++......+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +..|...+..++|+|||++|++++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 323 DVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp CTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCC
Confidence 998877655555666 79999999 999999988888888 99998776544 447888999999999999999999999
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----------cEEEEeCCCCcEEE
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----------TCKFWRLLNGTHLS 217 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~ 217 (387)
.|++||+ ..+........|...+.+++|+|++ ++|++++.++ .|++||+.+++...
T Consensus 401 ~v~~~d~------------~tg~~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~ 466 (1045)
T 1k32_A 401 EIMTVDL------------ETGKPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 466 (1045)
T ss_dssp EEEEEET------------TTCCEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred eEEEEEC------------CCCceEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEEECCCCcEEE
Confidence 9999999 4455555566888999999999985 8888777644 89999999887333
Q ss_pred EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc---------------------------------ccc-c
Q 035621 218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM---------------------------------HKG-Q 263 (387)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~-~ 263 (387)
...+...+..++|+|+|++|+.++.++....|+......... ..+ .
T Consensus 467 l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 546 (1045)
T 1k32_A 467 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 546 (1045)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred eeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHh
Confidence 333667788999999999999999887777776532211000 000 0
Q ss_pred eeEeecccccccEEEEEEecCCCEEEE-------------EeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 264 ELVTLANRHDGVVVSVMMMNEGKNLVS-------------AAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
.....+..|.+.+..++++|+|+++++ ...+..|++||+.+++..... ..+..+.|++
T Consensus 547 ~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~~~S~ 617 (1045)
T 1k32_A 547 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSA 617 (1045)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEEEECT
T ss_pred HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----cCcceEEECC
Confidence 011122346678999999999987775 123557899999988764333 2355555443
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5.7e-23 Score=178.50 Aligned_cols=261 Identities=11% Similarity=0.076 Sum_probs=199.7
Q ss_pred CCCceeEEEcCccceeeeccccCC-----CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE-ecCCCcEEEEe
Q 035621 38 RSPRRGLTFAGKPFIAASHISPTT-----GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT-GGLSGNVYAIS 111 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~~~~~~~-----~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d 111 (387)
...+..++|+|++..... .... .++.|.+||..+++....+.....+..++|+|+|+++++ ...++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~--~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWL--ATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEE--EECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEE--EcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 345788999996543321 1111 278999999999998888887777899999999996655 45578999999
Q ss_pred CCCCceeEEccCCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621 112 VPKGDILRSFSAHDKP---------VSCLKISPDGSLLISGG--DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180 (387)
Q Consensus 112 ~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (387)
+.+++.+..+..+... +.+++|+|+++++++++ .++.|.+||+ ........+..+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~------------~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG------------GNIKLKTAIQNTGK 185 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET------------TTTEEEEEECCCCT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC------------CCCceEEEecCCCC
Confidence 9999988877654322 78999999999877776 4788999999 45555666654566
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceeEEEeCCCCCeEEEEcc-CCcEEEEecccc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-----PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQ 254 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 254 (387)
.+..++|+|++ +++++++.++.|.+||+.+++....+.. ...+..++|+|+++++++++. ++.|++||..+.
T Consensus 186 ~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 186 MSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp TCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 67889999885 7888888899999999999998888764 345788999999998877765 599999999774
Q ss_pred ccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 255 SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.. ......+. ...++|+|++++++.++ .++.|.+||..+++.+..+... ..+..++|++.
T Consensus 264 ~~--------~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d 324 (353)
T 3vgz_A 264 NI--------LAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSAD 324 (353)
T ss_dssp CE--------EEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTT
T ss_pred cE--------EEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCC
Confidence 32 22221111 25689999999665554 7899999999999999888754 36778887643
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=7.2e-23 Score=177.52 Aligned_cols=274 Identities=8% Similarity=0.112 Sum_probs=180.7
Q ss_pred CCcEEEEeC--CCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccc-cCCCCCeeeEE
Q 035621 17 EGPITAYNP--SSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHN-IPVPEPVAPLA 90 (387)
Q Consensus 17 dg~i~iwd~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~-~~~~~~v~~~~ 90 (387)
++.|++|++ .+++... ....+...+..++|+|++.+.+.. ..+.++.|.+|++.+++. +.. ..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~--~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVD--KEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEE--EETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEE--ecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 455777655 4565433 233455668889999976532210 013478999999977653 222 22456788999
Q ss_pred eccCCCEEEEec-CCCcEEEEeCC-CCc--eeEEccC---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 91 TTADGSYLFTGG-LSGNVYAISVP-KGD--ILRSFSA---------HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 91 ~~~~~~~l~~~~-~dg~i~i~d~~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
|+|+|++|++++ .++.+.+|++. ++. .+..+.. +...+.+++|+|+++++++...++.|.+|++...
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999888887 67899999995 332 2333321 1224889999999996666667889999998310
Q ss_pred cccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC--CcE--EEEEe-cC------Cc
Q 035621 158 VDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN--GTH--LSTVT-FP------CA 224 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~--~~~--~~~~~-~~------~~ 224 (387)
........+..+ ......++|+|++ + +++++..++.|.+|++.. ++. +..+. .+ ..
T Consensus 173 ---------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 173 ---------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp ---------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred ---------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 011112222222 2367789999885 6 445566789999999874 443 22222 12 45
Q ss_pred eeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-CcEEEE--
Q 035621 225 IMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-GSVYIW-- 300 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw-- 300 (387)
+..++|+|+|++|+++ ..++.|.+|++..... .........+...+..++|+|+|++|++++.+ +.|.+|
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTTEEEEEEECGGGC------EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 8899999999988655 4589999999974211 11222223455668899999999988887754 899999
Q ss_pred ECCCccEEE
Q 035621 301 EIEKRQVVM 309 (387)
Q Consensus 301 d~~~~~~~~ 309 (387)
|..++++..
T Consensus 316 d~~tg~l~~ 324 (347)
T 3hfq_A 316 DLTSGKLSL 324 (347)
T ss_dssp CTTTCCEEE
T ss_pred eCCCCeEEe
Confidence 556677654
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.2e-23 Score=180.31 Aligned_cols=238 Identities=9% Similarity=0.035 Sum_probs=170.5
Q ss_pred ccccCCCcEEEeeCCC-CcEEEEeCC--CCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc---C
Q 035621 2 LHHLPCNEVILTSSPE-GPITAYNPS--SGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW---S 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~---~ 73 (387)
++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++.... +++..++.|.+||+. .
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~---~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVF---VGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEE---EEETTTTEEEEEEEETTEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEE---EEecCCCeEEEEECCCCcc
Confidence 5799999988888776 899999987 554 344555444 789999999764322 124568999999994 3
Q ss_pred CCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC-CceeE----EccC-CCCCeEEEEEcCCCCEEEEEe-C
Q 035621 74 STPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK-GDILR----SFSA-HDKPVSCLKISPDGSLLISGG-D 145 (387)
Q Consensus 74 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~ 145 (387)
.+....+.....+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|+++++++++ .
T Consensus 119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 44555556667799999999999888877 889999999987 65432 2222 345788999999999776554 7
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeee---cc---CCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCC--C--Cc
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---AH---NDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLL--N--GT 214 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~--~--~~ 214 (387)
++.|.+|++.... .......... .. ...+..++|+|++ ++|+ ++..++.|.+||+. + .+
T Consensus 199 ~~~i~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 199 NSSVDVWELKDPH--------GNIECVQTLDMMPENFSDTRWAADIHITPDG--RHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp TTEEEEEESSCTT--------SCCEEEEEEECSCTTCCSCCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEEecCCC--------CcEEEEeeccccCccccccCCccceEECCCC--CEEEEEecCCCEEEEEEEcCCCCceE
Confidence 8999999983210 0011111221 11 2356679999875 5555 56679999999998 2 34
Q ss_pred EEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccc
Q 035621 215 HLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKY 253 (387)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 253 (387)
.+..+.....+..++|+|++++|++++ .++.|.+|++..
T Consensus 269 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 269 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 555555555689999999999998888 589999997654
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=9.5e-24 Score=195.85 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=190.3
Q ss_pred ccccCCCcEEEeeCC-CCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcc
Q 035621 2 LHHLPCNEVILTSSP-EGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPL 77 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~ 77 (387)
++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|+ .+....-. ...+....+|.+.. ....
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~-~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDV-SKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEEC-STTSCCEEEEEEETTSTTCC
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEecc-CCCCcceEEEEEeccCCCcc
Confidence 578999999999886 999999998666654 454455 67999999998 33322100 12245556655543 2222
Q ss_pred cccCCCCCeeeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 035621 78 HNIPVPEPVAPLATTADGSY-LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATV 152 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw 152 (387)
..+.........+|+|+|+. +++.+.++.+.+||+.+++.......+ . .+++|+|||+++++++.+ +.|++|
T Consensus 104 ~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~ 180 (582)
T 3o4h_A 104 QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTS 180 (582)
T ss_dssp EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence 23433344557788998863 333344455669999888765554433 2 789999999999988877 789999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--cEEEEeCCCCcEEEEEe-cCCceeEEE
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--TCKFWRLLNGTHLSTVT-FPCAIMGLA 229 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~ 229 (387)
|+ ..+ ....+..|...+..++|+|++ +.|+++..++ .|++||+.+++.. .+. +...+..++
T Consensus 181 d~------------~~g-~~~~l~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 181 NL------------SSG-GLRVFDSGEGSFSSASISPGM--KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp ET------------TTC-CCEEECCSSCEEEEEEECTTS--CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred cC------------CCC-CceEeecCCCccccceECCCC--CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 98 222 234667888889999999985 8888888888 8999999998877 444 445566666
Q ss_pred --------eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC---cEE
Q 035621 230 --------LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG---SVY 298 (387)
Q Consensus 230 --------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~ 298 (387)
|+|||..+++++.++.+++|++ +... . ...+.+.+++|+ +++++++++.+. .++
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~---------~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERV---------E---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV 309 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE---------C---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee---------c---cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence 9999988888999999999998 2111 0 234568899999 999999888774 477
Q ss_pred EEECCC
Q 035621 299 IWEIEK 304 (387)
Q Consensus 299 iwd~~~ 304 (387)
+||..+
T Consensus 310 ~~d~~~ 315 (582)
T 3o4h_A 310 SLPSGE 315 (582)
T ss_dssp EETTCC
T ss_pred EEcCCC
Confidence 777654
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=8.3e-22 Score=171.79 Aligned_cols=303 Identities=14% Similarity=0.123 Sum_probs=192.3
Q ss_pred cCCCcEEEeeC----CCCcEEEEeC--CCCceeEeccCCCCCceeEEEcCccceeeeccccCCC----CCeEEEEEccC-
Q 035621 5 LPCNEVILTSS----PEGPITAYNP--SSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG----SGSVHLYNLWS- 73 (387)
Q Consensus 5 s~~~~~l~~~~----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----d~~v~vw~~~~- 73 (387)
.+...+++.|+ .++.|++|++ .+++.......+...+..++|+|++..+.. ++. ++.+.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~----~~~~~~~~~~v~~~~~~~~ 85 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYS----VNEFSKDQAAVSAFAFDKE 85 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEE----EECCSSTTCEEEEEEEETT
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEE----EEccCCCCCcEEEEEEeCC
Confidence 34455666664 4567899866 456543322226677889999997654332 333 48999999876
Q ss_pred -CCc--ccccC-CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEc------cC--------CCCCeEEEEEc
Q 035621 74 -STP--LHNIP-VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSF------SA--------HDKPVSCLKIS 134 (387)
Q Consensus 74 -~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~v~~~~~~ 134 (387)
++. +.... +......+++ ++++|++++ .++.|.+|++.....+..+ .+ +...+.+++|+
T Consensus 86 ~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 86 KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence 332 22222 3345667777 788777765 5789999999754332211 11 12345889999
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCC-ccc----eEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEE
Q 035621 135 PDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPD-DLM----LQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKF 207 (387)
Q Consensus 135 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~i 207 (387)
|+++++++++ .++.|.+|++....... ... ... ......+......++|+|++ +++++++ .++.|.+
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANAD----NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIA 237 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTT----TCCCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcc----cccceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEE
Confidence 9999766655 58899999883210000 000 000 11122344567889999885 6666665 6899999
Q ss_pred EeCCCCcE--EEEEec----CCceeEEEeCCCCCeEEEEccC--CcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 208 WRLLNGTH--LSTVTF----PCAIMGLALDPTETDFFAAGSD--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 208 wd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
||+.+++. +..+.. ...+..++|+|+|++|+++..+ +.|.+|++...... ......... ...+..+
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~ 311 (361)
T 3scy_A 238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNF 311 (361)
T ss_dssp EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEE
T ss_pred EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceE
Confidence 99987754 233321 2346799999999999777654 89999999632110 111111112 4567899
Q ss_pred EEecCCCEEEEEe-CCCcEEEE--ECCCccEEEEeecccCCCceeEEEE
Q 035621 280 MMMNEGKNLVSAA-EDGSVYIW--EIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 280 ~~s~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
+|+|+|++|++++ .++.|.+| |..++++...........+.++.|.
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999999888887 67899995 5557877665544344578888775
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.4e-22 Score=174.43 Aligned_cols=233 Identities=15% Similarity=0.143 Sum_probs=171.7
Q ss_pred ccccCCCcEEEeeC-CCCcEEEEeCCCCce-eEeccCCCCCceeEEEcCccceeeeccccCCCC-C--eEEEEEccCCCc
Q 035621 2 LHHLPCNEVILTSS-PEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS-G--SVHLYNLWSSTP 76 (387)
Q Consensus 2 l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-~--~v~vw~~~~~~~ 76 (387)
++|+|+|+++++++ .++.|.+||+.+++. ...+..+..+..+++|+|++..... +..+ + .|.+||+.+++.
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~----~~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT----VTGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE----CCCSSSSCEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE----ecCCCCcccEEEEECCCCCe
Confidence 57999998665554 488999999999987 7777777776666999997654432 3334 3 999999999988
Q ss_pred ccccCCCCCeeeEEeccCCCEEEEe-cCCCc-EEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEE-eCCCcE
Q 035621 77 LHNIPVPEPVAPLATTADGSYLFTG-GLSGN-VYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISG-GDDGVI 149 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 149 (387)
+..+.....+.+++|+|+|++++++ ..++. |.+|++.....+ .........+..++|+|++++++++ ..++.|
T Consensus 121 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 121 ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence 8888777788999999999866655 45578 999998754332 1111334568999999999966555 468999
Q ss_pred EEEeCCcccccCCCCCCCCccc---eEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCCcE--EEEEecC-
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLM---LQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNGTH--LSTVTFP- 222 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~--~~~~~~~- 222 (387)
.+||+. .... +..+.. ...+..++|+|++ ++++ +...++.|.+||+.+++. +..+...
T Consensus 201 ~v~d~~------------~~~~~~~~~~~~~-~~~~~~~~~spdg--~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 201 GILETQ------------NPENITLLNAVGT-NNLPGTIVVSRDG--STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp EEEECS------------STTSCEEEEEEEC-SSCCCCEEECTTS--SEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred EEEECC------------CCcccceeeeccC-CCCCceEEECCCC--CEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 999983 3333 455543 3567789999885 6554 445578899999999877 4443321
Q ss_pred ----C---ceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621 223 ----C---AIMGLALDPTETDFFAAGS-DGLIYKGLLKY 253 (387)
Q Consensus 223 ----~---~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 253 (387)
. ....++|+|++++|++++. ++.|.+||+..
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 1 2355899999998876655 67999999976
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=198.26 Aligned_cols=272 Identities=12% Similarity=0.115 Sum_probs=189.6
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeeccccCC---------CCCeEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISPTT---------GSGSVHLY 69 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~---------~d~~v~vw 69 (387)
++|+|||++++++ .|+.|++||+.+++....+.+|.. .+.+++|+|++..++. ++ .++.|++|
T Consensus 21 ~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~----~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 21 PNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYL----ESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEE----EEEEEECSSSCEEEEEEEE
T ss_pred cEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEE----EecCceeEEeecceEEEEE
Confidence 5799999766655 589999999999988777765543 4899999997765443 33 27899999
Q ss_pred EccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cCCCCCe-----------------EEE
Q 035621 70 NLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SAHDKPV-----------------SCL 131 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~~~ 131 (387)
|+.+++.+........+..++|+|||+.|+.+. ++.|++|++.+++..... .++...| .++
T Consensus 96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred ECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 999887643233346789999999999999885 789999999888765433 2222222 489
Q ss_pred EEcCCCCEEEEEeCCC----------------------------------cEEEEeCCcccccCCCCCCCCccce-----
Q 035621 132 KISPDGSLLISGGDDG----------------------------------VIATVPIFQLVDEHTDDKNPDDLML----- 172 (387)
Q Consensus 132 ~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~----- 172 (387)
+|+|||++|++++.|. .|++||+.. ....
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------------~~~~~~~~~ 242 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------------PAYVGPQEV 242 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------------HHHHCCEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC------------CCccceeEc
Confidence 9999999999988652 678888832 2211
Q ss_pred ---EeeeccCCCeEEEEEeeCCCCceEEEEeCC----CcEEEEe----CCCCcEEEEE-----ecCCcee-----EEEeC
Q 035621 173 ---QKFVAHNDSVTAITCCIGSFNSIIISCSMD----CTCKFWR----LLNGTHLSTV-----TFPCAIM-----GLALD 231 (387)
Q Consensus 173 ---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~~ 231 (387)
..+..|...+..++|+|++ +++++.... ..|.+|| +.+++....+ .+...+. .+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred cCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence 1234577889999999984 677764432 2488899 7776654333 2344455 78999
Q ss_pred CCCCeEEE--EccCCc--EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEEEEEC
Q 035621 232 PTETDFFA--AGSDGL--IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVYIWEI 302 (387)
Q Consensus 232 ~~~~~l~~--~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~ 302 (387)
|||+.++. ...+|. |++|++..+. ... +..+...+..+.++ +++.|+..+.+ +..++|.+
T Consensus 321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~---------~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKHIHYIKDTVEN---------AIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp TTSSCEEEEEECTTSCEEEEEESSCSTT---------CEE-CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CCCCeEEEEEEccCCceEEEEEECCCCc---------eEe-cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 99997655 445554 5556654421 111 22345567777777 88877766554 78899987
Q ss_pred CC
Q 035621 303 EK 304 (387)
Q Consensus 303 ~~ 304 (387)
..
T Consensus 390 ~~ 391 (719)
T 1z68_A 390 SI 391 (719)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.2e-22 Score=193.32 Aligned_cols=284 Identities=9% Similarity=0.007 Sum_probs=192.6
Q ss_pred ccccCCCcEEEeeCCC---------CcEEEEeCCCCceeEec---cCCCCCceeEEEcCccceeeeccccCCCCCeEEEE
Q 035621 2 LHHLPCNEVILTSSPE---------GPITAYNPSSGAILAHF---SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLY 69 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw 69 (387)
++|||||++|++++.+ +.|++||+.+++. ..+ .+|...+..++|+|++...+. ++ ++.|++|
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~----~~-~~~i~~~ 139 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF----IF-ENNIYYC 139 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE----EE-TTEEEEE
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE----EE-CCeEEEE
Confidence 5799999999998764 7788999998876 333 345556899999997755443 33 4799999
Q ss_pred EccCCCcccccCC-CCC------------------eeeEEeccCCCEEEEecCCC-------------------------
Q 035621 70 NLWSSTPLHNIPV-PEP------------------VAPLATTADGSYLFTGGLSG------------------------- 105 (387)
Q Consensus 70 ~~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~l~~~~~dg------------------------- 105 (387)
|+.+++....... ... +.+++|+|||+.|++++.++
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 9998877654443 222 37899999999999887543
Q ss_pred ---------cEEEEeCCCCceeEEccCC------CCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCCCCCC
Q 035621 106 ---------NVYAISVPKGDILRSFSAH------DKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHTDDKN 166 (387)
Q Consensus 106 ---------~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~ 166 (387)
.|++||+.+++....+..+ ...+..++|+|||+++++... +..|++||+
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~------------ 287 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA------------ 287 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET------------
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC------------
Confidence 7999999888865666544 567899999999998877653 357999998
Q ss_pred CCccceEeeec-cCCCe----EEEEEeeCCCCceEEE--EeCCC------cEEEEe-CCCCc--EEEEEe-cCCceeE-E
Q 035621 167 PDDLMLQKFVA-HNDSV----TAITCCIGSFNSIIIS--CSMDC------TCKFWR-LLNGT--HLSTVT-FPCAIMG-L 228 (387)
Q Consensus 167 ~~~~~~~~~~~-~~~~i----~~~~~~~~~~~~~l~s--~~~d~------~i~iwd-~~~~~--~~~~~~-~~~~v~~-~ 228 (387)
..+.....+.. +...+ ..++|+|++ +.|+. +..++ .|.+|| ...+. +...+. ....+.. +
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~ 365 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDG--RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL 365 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTS--CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCC--CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence 33444443333 33333 378899886 54443 55677 577777 34443 144444 3344554 6
Q ss_pred EeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecc--cccccEEEEEEecCCCEEEEEeCC-C--cEEEE
Q 035621 229 ALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLAN--RHDGVVVSVMMMNEGKNLVSAAED-G--SVYIW 300 (387)
Q Consensus 229 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iw 300 (387)
+|+|+|+.|+..+.+ +.+++|++...... ....+.. .|...+..++|+|+|++|+..... + ...++
T Consensus 366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~ 439 (723)
T 1xfd_A 366 AYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH 439 (723)
T ss_dssp EEETTTTEEEEEESSSCTTCCEEEEECSSTTC------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred EEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE
Confidence 999999999876554 78999998753211 1111111 156678899999999988865332 2 34456
Q ss_pred ECCCccEEEEe
Q 035621 301 EIEKRQVVMVL 311 (387)
Q Consensus 301 d~~~~~~~~~~ 311 (387)
+..+++.+..+
T Consensus 440 ~~~~~~~~~~~ 450 (723)
T 1xfd_A 440 NTTDKKKMFDL 450 (723)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 76666655444
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=3e-22 Score=178.09 Aligned_cols=235 Identities=11% Similarity=0.036 Sum_probs=160.9
Q ss_pred CccccCCCcEEEeeCCCCcEEEEeCCCC----------ceeEec-----cCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621 1 LLHHLPCNEVILTSSPEGPITAYNPSSG----------AILAHF-----SGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65 (387)
Q Consensus 1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 65 (387)
+|++++++.++++++.++ ++||+.... ..+... ..+...|.+++|+|++.+++....+++.|+.
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~ 119 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI 119 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence 478999999999999888 899875311 011111 1255679999999976544310015899999
Q ss_pred EEEEEccCC--------Ccc---cccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621 66 VHLYNLWSS--------TPL---HNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK 132 (387)
Q Consensus 66 v~vw~~~~~--------~~~---~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 132 (387)
|++||+.++ +.+ ..+. |...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|++++
T Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ 199 (434)
T 2oit_A 120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC 199 (434)
T ss_dssp EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence 999999764 221 2222 5678999999997 88999999999999999999877766677889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-------cCCCeEEEEEeeCCCCceEEE-EeCCC-
Q 035621 133 ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-------HNDSVTAITCCIGSFNSIIIS-CSMDC- 203 (387)
Q Consensus 133 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~l~s-~~~d~- 203 (387)
|+|+|++|++|+.||.|++||++ ......+.. |...+.+++|+++. .++++ ...||
T Consensus 200 wspdg~~lasgs~dg~v~iwd~~-------------~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~--~~l~~~~~~dg~ 264 (434)
T 2oit_A 200 WSPKGKQLAVGKQNGTVVQYLPT-------------LQEKKVIPCPPFYESDHPVRVLDVLWIGTY--VFAIVYAAADGT 264 (434)
T ss_dssp ECTTSSCEEEEETTSCEEEECTT-------------CCEEEEECCCTTCCTTSCEEEEEEEEEETT--EEEEEEEETTCC
T ss_pred EcCCCCEEEEEcCCCcEEEEccC-------------CcccccccCCcccCCCCceeEEEEEEecCc--eEEEEEccCCCc
Confidence 99999999999999999999984 112222222 33478899998864 55543 33443
Q ss_pred -----cEEEEeCCCCc-----EEEEEec------C--CceeEEEeCCCCCeEEEEcc-CCcEEEEec
Q 035621 204 -----TCKFWRLLNGT-----HLSTVTF------P--CAIMGLALDPTETDFFAAGS-DGLIYKGLL 251 (387)
Q Consensus 204 -----~i~iwd~~~~~-----~~~~~~~------~--~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~ 251 (387)
.+++|++++.+ ....+.. . .+...+.+-++.+++++++. .+.|.++..
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999998652 1122110 1 11122333366667666554 555666654
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.5e-22 Score=174.62 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=182.2
Q ss_pred cccCCCCCeEEEEEccCCCcccccCCCC---CeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCC-----CCC
Q 035621 57 ISPTTGSGSVHLYNLWSSTPLHNIPVPE---PVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAH-----DKP 127 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~ 127 (387)
+++++.++.|.+||+.+++.+..+.... .+..++|+|++++++ ++..++.|.+||+.+++.+..+... ...
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 4457789999999999998888877666 689999999998765 5556789999999999888766531 125
Q ss_pred eEEEEEcCCCCEEEEEe------------CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 128 VSCLKISPDGSLLISGG------------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
+.+++|+|+++++++++ .++.|.+||+ ........+.. ...+..++|+|++ ++
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~------------~~~~~~~~~~~-~~~~~~~~~s~dg--~~ 148 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------------ETLSRRKAFEA-PRQITMLAWARDG--SK 148 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------------TTTEEEEEEEC-CSSCCCEEECTTS--SC
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEEC------------CCCcEEEEEeC-CCCcceeEECCCC--CE
Confidence 77899999999988886 5799999999 34444444443 4567788898885 66
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC------------------------cEEEEec
Q 035621 196 IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG------------------------LIYKGLL 251 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~ 251 (387)
++++ ++.|.+||+.+++....+........+.|+|+++.+++.+..+ .|.+||+
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 7776 6889999999999888776443222348899998776655433 3578888
Q ss_pred cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.+.... ......+...+.+++|+|++++++++ ++.|++||+.+++.+..+... ..+.+++|++.
T Consensus 227 ~~~~~~--------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d 290 (337)
T 1pby_B 227 ETGEMA--------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTD 290 (337)
T ss_dssp TTCCEE--------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTT
T ss_pred CCCCce--------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCC
Confidence 764321 11123456678899999999999988 789999999999998887643 35777777653
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=4.8e-22 Score=176.71 Aligned_cols=259 Identities=13% Similarity=0.071 Sum_probs=175.0
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----------------cccccC
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----------------PLHNIP 81 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----------------~~~~~~ 81 (387)
+.+++|+.. .. .+...++.++++++..+.+. ++.++ +++|+..... ....+.
T Consensus 23 ~~vri~~~~-~~------~~~~~~n~lavs~~~~~l~~----~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSP-EE------LPKERSSLLAVSNKYGLVFA----GGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCC-SS------CCCSCCBCEEEETTTTEEEE----EETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC
T ss_pred eeEEecCCc-cc------cCCCCccEEEEecCCCEEEE----ECCCE-EEEEEchHhhhhcccccCcccccccCcccccc
Confidence 457777642 11 12345788999985544432 56666 8888763210 111233
Q ss_pred CCCCeeeEEeccCCCEEE----EecCCCcEEEEeCCCC--------ce---eEEccCCCCCeEEEEEcCC-CCEEEEEeC
Q 035621 82 VPEPVAPLATTADGSYLF----TGGLSGNVYAISVPKG--------DI---LRSFSAHDKPVSCLKISPD-GSLLISGGD 145 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 145 (387)
+...|.+++|+|++++|+ +|+.|+.|++||++++ +. +..+.+|...|.+++|+|+ +++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 556799999999999999 7889999999998654 21 4556679999999999997 789999999
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec----
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---- 221 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 221 (387)
||+|++||++ ..........|...|.+++|+|++ ++|++|+.||+|++||++ ++....+..
T Consensus 171 Dg~v~iwD~~------------~~~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 171 DGSIAVLQVT------------ETVKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp TSCEEEEEES------------SSEEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred CCeEEEEEcC------------CCcceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence 9999999993 344455566789999999999984 899999999999999998 666655542
Q ss_pred ----CCceeEEEeCCCCCeEEEEc-cCC------cEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCE
Q 035621 222 ----PCAIMGLALDPTETDFFAAG-SDG------LIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKN 287 (387)
Q Consensus 222 ----~~~v~~~~~~~~~~~l~~~~-~dg------~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~ 287 (387)
...+.+++|++++.++++.+ .+| .+++|++......... ....+.........+-..+.+-++.++
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 12789999999887776543 343 3899999864221100 000000000122223233444467676
Q ss_pred EEEEe-CCCcEEEEECC
Q 035621 288 LVSAA-EDGSVYIWEIE 303 (387)
Q Consensus 288 l~s~~-~dg~i~iwd~~ 303 (387)
+++++ ..+.|.+....
T Consensus 316 ~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 316 VLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEETTCSBCEEEEEC
T ss_pred EEEecCCCCceeEEEec
Confidence 65544 45557776643
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=2.2e-20 Score=162.79 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=169.4
Q ss_pred ccccCCCcEEEeeCCC----CcEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSPE----GPITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~ 73 (387)
++|+|||++|++++.+ +.|.+|++.. ++. +.....+...+..+++ ....+.. +...++.+.+|++..
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~----~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVT----ANYSGGSITVFPIGQ 129 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEE----EETTTTEEEEEEBCT
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEE----EECCCCEEEEEEeCC
Confidence 6899999999988875 7999998764 433 3344445556677777 3222222 245789999999975
Q ss_pred CCcccccC----C-----------CCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCc-------ee------EEccCC
Q 035621 74 STPLHNIP----V-----------PEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGD-------IL------RSFSAH 124 (387)
Q Consensus 74 ~~~~~~~~----~-----------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------~~------~~~~~~ 124 (387)
...+..+. + ...+.+++|+|+|+++++++ .++.|.+|++.... +. .....+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 54332221 1 12357899999999776654 57899999886543 11 112234
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEee---eccCCCeEEEEEeeCCCCceEEEEe
Q 035621 125 DKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF---VAHNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
...+..++|+|+++++++++ .++.|.+||+... ....+..+ ..+......++|+|++ ++|+++.
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------~~~~~~~~~~~~~~~~~~~~i~~spdg--~~l~v~~ 277 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------MLDEIQTVAADTVNAQGSGDIHLSPDG--KYLYASN 277 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT----------EEEEEEEEESCSSCCCCEEEEEECTTS--SEEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC----------ceEEeEEEecCCCCCCCcccEEECCCC--CEEEEEC
Confidence 55688999999999887777 6899999998311 11112222 2233456789999885 7775555
Q ss_pred C--CCcEEEEeCC--CCc--EEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeec-ccc
Q 035621 201 M--DCTCKFWRLL--NGT--HLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLA-NRH 272 (387)
Q Consensus 201 ~--d~~i~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~ 272 (387)
. ++.|.+|++. +++ .+..+.....+..++|+|+|++|++++ .++.|.+|++..... .+.... ..+
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g-------~~~~~~~~~~ 350 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG-------LLTDIKKDIK 350 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC-------CEEECSCCEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC-------cEeecceeee
Confidence 4 5899999996 444 344444555788999999999988887 578999976654221 111111 124
Q ss_pred cccEEEEEEe
Q 035621 273 DGVVVSVMMM 282 (387)
Q Consensus 273 ~~~v~~~~~s 282 (387)
...+.|++|.
T Consensus 351 ~~~p~~v~~~ 360 (361)
T 3scy_A 351 VDKPVCLKFV 360 (361)
T ss_dssp CSSEEEEEEE
T ss_pred CCCCeEEEEc
Confidence 4568888886
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=1.4e-20 Score=164.11 Aligned_cols=274 Identities=10% Similarity=0.036 Sum_probs=180.6
Q ss_pred EEEeeCCC--CcEEEEeC--CCCceeE--ecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc-CCCcccccC
Q 035621 10 VILTSSPE--GPITAYNP--SSGAILA--HFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SSTPLHNIP 81 (387)
Q Consensus 10 ~l~~~~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~~~~~~~~ 81 (387)
++++|+.. +.|.+|++ .+++... ... .....+..++|+|++..+.. ++.+ .|.+|++. +++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~----~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG----AAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE----EEBT-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE----Eccc-eEEEEEECCCCCEEEeeE
Confidence 45555543 46888764 5665432 221 23346889999997654322 4444 89999997 776543332
Q ss_pred C--CCCeeeEEeccCCCE--EEEec-------------CCCcEEEEeCC-CCceeEEcc----CCCCCeEEEEEcCCCCE
Q 035621 82 V--PEPVAPLATTADGSY--LFTGG-------------LSGNVYAISVP-KGDILRSFS----AHDKPVSCLKISPDGSL 139 (387)
Q Consensus 82 ~--~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~ 139 (387)
+ .+.+.+++|+|+|++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|+|++
T Consensus 79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence 2 234677999999994 55553 68899999997 466544433 24567999999999998
Q ss_pred EEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCC--CC
Q 035621 140 LISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLL--NG 213 (387)
Q Consensus 140 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~~ 213 (387)
++++.. ++.|++||+... .....+..+. .|...+..++|+|++ +++++++. ++.|.+|++. ++
T Consensus 159 l~~~~~~~~~v~~~~~~~~---------g~~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLAS---------GEVELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEEEETTTTEEEEEEECTT---------SCEEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEcCCCCEEEEEEECCC---------CCEEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCCCC
Confidence 887764 679999998310 0111122232 245678899999885 77776664 7899999765 56
Q ss_pred cEE---EEEe-cC------C-------ceeEEE-eCCCCCeEEEEccCC------cEEEEeccc-cccccccccceeEee
Q 035621 214 THL---STVT-FP------C-------AIMGLA-LDPTETDFFAAGSDG------LIYKGLLKY-QSRQQMHKGQELVTL 268 (387)
Q Consensus 214 ~~~---~~~~-~~------~-------~v~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~ 268 (387)
+.. ..+. .+ . .+..++ |+|||++|++++.+. .|.+|++.. +.. ......
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~------~~~~~~ 301 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI------EKQLFL 301 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE------EEEEEE
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE------EEeeee
Confidence 543 2232 11 1 478999 999999998876533 799999863 111 011111
Q ss_pred cccccccEEEEEEec---CCCEEEEEeCC-CcEEEEECCCc
Q 035621 269 ANRHDGVVVSVMMMN---EGKNLVSAAED-GSVYIWEIEKR 305 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iwd~~~~ 305 (387)
...+...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 302 ~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 122344566789999 89999988764 89999998776
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=7.5e-22 Score=187.78 Aligned_cols=287 Identities=10% Similarity=0.007 Sum_probs=191.0
Q ss_pred ccccCCCcEEEeeCC---------CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 2 LHHLPCNEVILTSSP---------EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 2 l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|++...+. + .++.|++|++.
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~----~-~~~~i~~~~~~ 138 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAY----V-YQNNIYLKQRP 138 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEE----E-ETTEEEEESST
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEE----E-ECCeEEEEeCC
Confidence 479999999998876 7899999999887631111 1246889999997765543 3 47899999998
Q ss_pred CCCcccccCCC--C-----------------CeeeEEeccCCCEEEEecCCC----------------------------
Q 035621 73 SSTPLHNIPVP--E-----------------PVAPLATTADGSYLFTGGLSG---------------------------- 105 (387)
Q Consensus 73 ~~~~~~~~~~~--~-----------------~v~~~~~~~~~~~l~~~~~dg---------------------------- 105 (387)
+++........ . ...+++|+|||++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433211 1 125899999999999987542
Q ss_pred ------cEEEEeCCCCcee--------EEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEe----CCcccccCCC
Q 035621 106 ------NVYAISVPKGDIL--------RSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATVP----IFQLVDEHTD 163 (387)
Q Consensus 106 ------~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~ 163 (387)
.|++||+.+++.. ..+..|...+..++|+||++++++.... ..|.+|| +.
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------- 290 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-------- 290 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--------
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--------
Confidence 7889999887653 1234678889999999998777764432 2488888 52
Q ss_pred CCCCCccceEee----eccCCCeE-----EEEEeeCCCCceEE--EEeCCC--cEEEEeCCCCcEEEEEe-cCCceeEEE
Q 035621 164 DKNPDDLMLQKF----VAHNDSVT-----AITCCIGSFNSIII--SCSMDC--TCKFWRLLNGTHLSTVT-FPCAIMGLA 229 (387)
Q Consensus 164 ~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~ 229 (387)
.+.....+ ..|...+. .+.|+|++ +.++ +...+| .|.+||+.+++ ...+. ....+..+.
T Consensus 291 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 291 ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA--ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF 363 (719)
T ss_dssp ----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTS--SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE
T ss_pred ----CCceEEEEecccccCCceEccccCCccEECCCC--CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE
Confidence 22222222 35666665 78899886 5333 344555 57778887776 33444 345577777
Q ss_pred eCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE-EeCC--CcEEEEE
Q 035621 230 LDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS-AAED--GSVYIWE 301 (387)
Q Consensus 230 ~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d--g~i~iwd 301 (387)
+. +++.++..+.+ +...+|.+........ ...+...+.+|...+..+.|+|++++++. ++.+ ..+.+||
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS--KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC--EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC--ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 77 77777766654 7888998765211000 00110001235667889999999987774 3333 4689999
Q ss_pred CCCccEEEEee
Q 035621 302 IEKRQVVMVLK 312 (387)
Q Consensus 302 ~~~~~~~~~~~ 312 (387)
+.+++.+..+.
T Consensus 441 ~~~g~~~~~~~ 451 (719)
T 1z68_A 441 GRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCCCEEEEee
Confidence 99888766554
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=2.4e-20 Score=161.92 Aligned_cols=292 Identities=13% Similarity=0.145 Sum_probs=200.7
Q ss_pred CCCcEEEeeC------CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cc----ccCCCCCeEEEEEccC
Q 035621 6 PCNEVILTSS------PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HI----SPTTGSGSVHLYNLWS 73 (387)
Q Consensus 6 ~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~d~~v~vw~~~~ 73 (387)
++++++++.. .|+.|++||..+++.+.++..+..+ .++|+|++..+.. .+ ..+..++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4666666543 3679999999999999888877665 8999997654332 11 1123467899999998
Q ss_pred CCcccccCC-------CCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCC-CEEEE
Q 035621 74 STPLHNIPV-------PEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDG-SLLIS 142 (387)
Q Consensus 74 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~ 142 (387)
++.+..+.. ......++++|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence 888776652 245788999999999998864 57899999999998887 6532 22335677765 67888
Q ss_pred EeCCCcEEEEeCCcccccCCCCCCCCccce------EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-
Q 035621 143 GGDDGVIATVPIFQLVDEHTDDKNPDDLML------QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH- 215 (387)
Q Consensus 143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 215 (387)
.+.||.+.+|++.. ..... ..+..+..++ .+.+.+++ ..++..+.++.+.++|+.....
T Consensus 169 ~~~dg~~~~v~~~~-----------~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 169 ICGDGGLLTINLGE-----------DGKVASQSRSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp EETTSSEEEEEECT-----------TSSEEEEEECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCE
T ss_pred ECCCCcEEEEEECC-----------CCcEeeeccccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCce
Confidence 88999999998732 11111 1111222222 22224543 4556667889999999875542
Q ss_pred -EEEEec-----------CCceeEEEeCCCCCeEEEEcc-----------CCcEEEEeccccccccccccceeEeecccc
Q 035621 216 -LSTVTF-----------PCAIMGLALDPTETDFFAAGS-----------DGLIYKGLLKYQSRQQMHKGQELVTLANRH 272 (387)
Q Consensus 216 -~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 272 (387)
...+.. +.....++++|+++.++++.. .+.|.+||..+. +.+..+ ..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------~~v~~i-~~~ 305 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------QRVARI-PGR 305 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------EEEEEE-ECT
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------cEEEEE-ecC
Confidence 222221 112223789999998888754 347999998873 333333 234
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEECCCc--cEEEEeecccCCCceeEEEEecC
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR--QVVMVLKNELAGSISEMVIATGI 328 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 328 (387)
. +.+++|+|||++|++++. +.|.+||..++ +++..+... ...+..+++++..
T Consensus 306 ~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G 359 (361)
T 2oiz_A 306 D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVG 359 (361)
T ss_dssp T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCS
T ss_pred C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCC
Confidence 4 899999999999998876 99999999999 999887543 3366777777643
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=2.1e-20 Score=162.03 Aligned_cols=238 Identities=15% Similarity=0.096 Sum_probs=162.6
Q ss_pred ccccCCCcEEEeeCC---CCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CC
Q 035621 2 LHHLPCNEVILTSSP---EGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-ST 75 (387)
Q Consensus 2 l~~s~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~ 75 (387)
++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++..+.. +...++.+.+|++.. +.
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~---~~~~~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYS---ANYHKGTAEVMKIAADGA 120 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEE---EETTTTEEEEEEECTTSC
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEE---EeCCCCEEEEEEeCCCCC
Confidence 67999999 554443 6899999997765 44454557778899999997653322 134789999999963 22
Q ss_pred --cccccCCC----------CCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeE--EccC-CCCCeEEEEEcCCCCE
Q 035621 76 --PLHNIPVP----------EPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILR--SFSA-HDKPVSCLKISPDGSL 139 (387)
Q Consensus 76 --~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~ 139 (387)
.+..+... ..+.+++|+|+|+++++...++.|.+|++. +++... .+.. ....+..++|+|+|++
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 22222221 247889999999966666678899999998 554332 2222 2336789999999996
Q ss_pred EEE-EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC------CCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCC
Q 035621 140 LIS-GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN------DSVTAITCCIGSFNSII-ISCSMDCTCKFWRLL 211 (387)
Q Consensus 140 l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~ 211 (387)
+++ ...++.|.+|++.... ........+.... ..+..++|+|++ ++| ++...++.|.+|++.
T Consensus 201 l~v~~~~~~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQT--------GAFTQLGIVKTIPADYTAHNGAAAIRLSHDG--HFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEETTTTEEEEEEEETTT--------TEEEEEEEEESSCTTCCSCCEEEEEEECTTS--CEEEEEEETTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEecCCC--------CceEEeeeeeecCCCCCCCCcceeEEECCCC--CEEEEEeCCCCEEEEEEEC
Confidence 665 5578899999983200 0111122222222 347889999885 655 666678999999997
Q ss_pred CC---cEEEEEec-CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621 212 NG---THLSTVTF-PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKY 253 (387)
Q Consensus 212 ~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 253 (387)
.. +.+..+.. ...+..++|+|+|++|++++. ++.|.+|++..
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 32 44444443 456889999999999888876 58999996653
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=3.5e-21 Score=169.52 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=182.8
Q ss_pred ccccCCCcEEEeeCC-CCc--EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSP-EGP--ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
.+|||||++|+.++. +|. |.+||+.+++......++...+..+.|+|++..++. ++.++.+++||+.+++...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~----~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY----VKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE----EETTTEEEEEETTTCCEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE----EeCCCeEEEEECCCCccee
Confidence 469999999988876 663 888999999888777777666668899997654433 5567899999999988766
Q ss_pred ccCCCCC-eee--EEeccCCCEEEEe----------------------cCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621 79 NIPVPEP-VAP--LATTADGSYLFTG----------------------GLSGNVYAISVPKGDILRSFSAHDKPVSCLKI 133 (387)
Q Consensus 79 ~~~~~~~-v~~--~~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 133 (387)
....+.. +.. ..++|++++++.. ..+..|.+||+.+++... +..+...+..++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~ 195 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIY 195 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEE
T ss_pred eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEE
Confidence 5554433 322 3458999988742 234689999999887544 4346677899999
Q ss_pred cC-CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEeC-CC
Q 035621 134 SP-DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCSM-DC 203 (387)
Q Consensus 134 ~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~-d~ 203 (387)
+| +++.|+....+ ..|.++|+. ......+..+. ..+..+.|+|++ +.|+..+. ++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-------------~~~~~~l~~~~~~~~~~~~~~spdg--~~l~~~~~~~~ 260 (388)
T 3pe7_A 196 RPYDDSTVAFCHEGPHDLVDARMWLINED-------------GTNMRKVKTHAEGESCTHEFWVPDG--SALVYVSYLKG 260 (388)
T ss_dssp ETTEEEEEEEEECSCTTTSSCSEEEEETT-------------SCCCEESCCCCTTEEEEEEEECTTS--SCEEEEEEETT
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEEeCC-------------CCceEEeeeCCCCcccccceECCCC--CEEEEEecCCC
Confidence 99 99988877653 367777762 12223333333 357788899886 65544332 22
Q ss_pred ----cEEEEeCCCCcEEEEEecCCc------eeEEEeCCCCCeEEEE---------ccCCcEEEEeccccccccccccce
Q 035621 204 ----TCKFWRLLNGTHLSTVTFPCA------IMGLALDPTETDFFAA---------GSDGLIYKGLLKYQSRQQMHKGQE 264 (387)
Q Consensus 204 ----~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~ 264 (387)
.|++||+.+++.......+.. ....+|+|||+.|+.. ..+..|++||+..+...
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------- 333 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------- 333 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-------
T ss_pred CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-------
Confidence 399999999875433232220 1223799999988864 44668999999874321
Q ss_pred eEeecccccc-----------cEEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 035621 265 LVTLANRHDG-----------VVVSVMMMNEGKNLVSAA-EDGSVYIWEI 302 (387)
Q Consensus 265 ~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~-~dg~i~iwd~ 302 (387)
.+ ..+.. .+..++|+|||+.|+..+ .+|...||.+
T Consensus 334 --~l-~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 334 --RV-ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp --EE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred --Ee-ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 11 12333 477889999999888655 4666666654
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=7.3e-21 Score=176.48 Aligned_cols=248 Identities=12% Similarity=0.029 Sum_probs=174.4
Q ss_pred CCCceeEEEcCccceeeeccccCCC-CCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecC---CCcEEEEeC
Q 035621 38 RSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGL---SGNVYAISV 112 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~ 112 (387)
..+|.+++|+|++...+. ++. ||+++||++.+++..+...+. ..+..++|+|| +.+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~----~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLV----VGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEE----EEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEE----EEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 457999999997655443 444 999999999777666555565 57999999999 77777664 444556544
Q ss_pred CC---CceeEEccCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 113 PK---GDILRSFSAHDKPVSCLKISPDGSL-LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 113 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
.. +... .+... ..+...+|+|+++. +++.+.++.+.+||+ ..+.. ..+..+.. .+++|+
T Consensus 96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~------------~~g~~-~~l~~~~~--~~~~~s 158 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYAL------------DGGGL-RELARLPG--FGFVSD 158 (582)
T ss_dssp ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEE------------ETTEE-EEEEEESS--CEEEEE
T ss_pred eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEc------------cCCcE-EEeecCCC--ceEEEC
Confidence 32 3322 33322 23456688888763 334444455569998 23332 23333333 788999
Q ss_pred eCCCCceEEEEeCC----CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC--cEEEEecccccccccccc
Q 035621 189 IGSFNSIIISCSMD----CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG--LIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 189 ~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~ 262 (387)
|++ +++++++.+ +.|++||+.+++......+...+..++|+|||+.|+++..++ .|++||+.++..
T Consensus 159 pDG--~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~------ 230 (582)
T 3o4h_A 159 IRG--DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV------ 230 (582)
T ss_dssp EET--TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE------
T ss_pred CCC--CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE------
Confidence 985 889988777 789999999888764444677889999999999999877888 899999886322
Q ss_pred ceeEeecccccccEEEEE--------EecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 263 QELVTLANRHDGVVVSVM--------MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
. ....|...+..++ |+|||.++++++.||.+++|++ ++.+.. ..+.+..+.|+
T Consensus 231 --~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~~~~v~~~~~s 291 (582)
T 3o4h_A 231 --E--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----PQGNHGRVVLW 291 (582)
T ss_dssp --E--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----CSSEEEEEEEE
T ss_pred --E--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----CCCceEEEEec
Confidence 1 3335555555566 9999999999999999999999 666542 23467777766
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1.1e-19 Score=172.93 Aligned_cols=306 Identities=13% Similarity=0.120 Sum_probs=187.4
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----eeEEEcCccceeeeccccCCCC---------CeEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----RGLTFAGKPFIAASHISPTTGS---------GSVH 67 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~d---------~~v~ 67 (387)
++|+|||++++++ ||.|++||+.+++....+.+|.... ..+.|+|++...+. ++.+ +.+.
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~----~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILL----EYNYVKQWRHSYTASYD 95 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEE----EEEEEECSSSCEEEEEE
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEE----EECCeeeEEEccceEEE
Confidence 5799999999987 8999999999999888787776442 33788997765433 3333 6778
Q ss_pred EEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cCCCCCe-----------------E
Q 035621 68 LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SAHDKPV-----------------S 129 (387)
Q Consensus 68 vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~ 129 (387)
+||+.+++......+...+...+|||||+.||.+ .++.|++|++.+++..+.. .++...+ .
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9999999876655567889999999999999988 4689999999888754422 2222222 3
Q ss_pred EEEEcCCCCEEEEEeCCCc-EEEEeCCccccc-------------CCCCCC----------CC---cc--ceEeee----
Q 035621 130 CLKISPDGSLLISGGDDGV-IATVPIFQLVDE-------------HTDDKN----------PD---DL--MLQKFV---- 176 (387)
Q Consensus 130 ~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~-------------~~~~~~----------~~---~~--~~~~~~---- 176 (387)
.+.|+|||++|+.++.|.. +.+|++...... .....+ .. +. ....+.
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 5899999999998864433 444433110000 000000 11 11 122232
Q ss_pred --ccCCCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCc----EE--EE---EecCCce-----eEEEeCCCCCe
Q 035621 177 --AHNDSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGT----HL--ST---VTFPCAI-----MGLALDPTETD 236 (387)
Q Consensus 177 --~~~~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~--~~---~~~~~~v-----~~~~~~~~~~~ 236 (387)
+|...+..++|+|++ +.++.... +..|.+||+.+++ +. .. -.+...+ ....|+|||+.
T Consensus 255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 267778999999996 65554432 3479999999887 21 11 1233333 37889999998
Q ss_pred EE-EEcc-CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE-EEeC----CC--cEEEEECCCc
Q 035621 237 FF-AAGS-DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAE----DG--SVYIWEIEKR 305 (387)
Q Consensus 237 l~-~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----dg--~i~iwd~~~~ 305 (387)
++ ..+. +| .|++|+...+. ...+. ...-.+..+.. +|++.|+ ++.. .+ .|+..++..+
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~---------~~~lT-~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD---------CTFIT-KGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS---------CEESC-CSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEEEEcCCCceEEEEEECCCCc---------eEecc-cCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 77 5543 44 57777776532 12222 22334555432 4466554 4433 23 4555566555
Q ss_pred cEEEEeecc---cCCCceeEEEEec
Q 035621 306 QVVMVLKNE---LAGSISEMVIATG 327 (387)
Q Consensus 306 ~~~~~~~~~---~~~~v~~~~~~~~ 327 (387)
+....+... ..+......|++.
T Consensus 402 ~~~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 402 TKVTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp EEEEESSTTTSTTTBCBEEEEECTT
T ss_pred CcceeeccccCCCCCceEEEEECCC
Confidence 443344322 1234455555543
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=1.2e-19 Score=157.20 Aligned_cols=243 Identities=9% Similarity=0.075 Sum_probs=169.3
Q ss_pred EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEE
Q 035621 44 LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRS 120 (387)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~ 120 (387)
++++++..+ +++++.++.|.+||+.+++.+..+..+. .+..++|+|++++++ ++..++.|.+||+.+++.+..
T Consensus 5 ~~~~~~~~~----~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEY----MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCTTCEE----EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccCCCEE----EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 445554333 3346789999999999998887777665 788999999998665 455788999999999988777
Q ss_pred ccCCC------CCeEEEEEcCCCCEEEEEeCC------------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621 121 FSAHD------KPVSCLKISPDGSLLISGGDD------------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 121 ~~~~~------~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
+..+. ..+..++|+|+++++++++.+ +.|.+||+.... ....+..+. +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~-~~~~~ 150 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---------EAKPVRTFP-MPRQV 150 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------GBCCSEEEE-CCSSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc---------ccceeeecc-CCCcc
Confidence 65332 237889999999999998865 899999984311 011222332 33467
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------------------ceeEEEeCCCCCeE
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------------------AIMGLALDPTETDF 237 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l 237 (387)
.+++|+|++ + ++.++ +.|.+||+.+++....+.... ....+++++++...
T Consensus 151 ~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 151 YLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp CCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred cceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 888999886 5 44444 349999999999888776432 34456666554211
Q ss_pred -----------EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCc
Q 035621 238 -----------FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 238 -----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
.....++.+.++++. .+...+..++|+| ++++++++ ++.|.+||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEFA------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEE------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred ccccccceeEEEEeccCCcEEecccc------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 122223444444332 2455788999999 99999988 889999999999
Q ss_pred cEEEEeecccCCCceeEEEEec
Q 035621 306 QVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+.+..+... ..+.+++|++.
T Consensus 286 ~~~~~~~~~--~~~~~~~~s~d 305 (349)
T 1jmx_B 286 KLIKAANLD--HTYYCVAFDKK 305 (349)
T ss_dssp EEEEEEECS--SCCCEEEECSS
T ss_pred eEEEEEcCC--CCccceEECCC
Confidence 998888643 34677777654
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.4e-18 Score=152.92 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=178.0
Q ss_pred EEEeCCCCceeEeccCCCCCcee-----EEEcCccceeeeccccCCCCC--eEEEEEccCCCcccccCCCC-CeeeEEec
Q 035621 21 TAYNPSSGAILAHFSGSRSPRRG-----LTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHNIPVPE-PVAPLATT 92 (387)
Q Consensus 21 ~iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~~~~~~-~v~~~~~~ 92 (387)
..+|..++..+..+..|...... .+|+|++..++.. ...++ .|.+||+.+++......... .+....|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~---~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFG---GAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEE---ECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEE---EcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 34677888888888887765555 8899976544321 22255 58888998887766655443 44578999
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE--EcCCCCEEEEE----------------------eCCCc
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK--ISPDGSLLISG----------------------GDDGV 148 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~ 148 (387)
|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++.. ..+..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9999999999889999999999987766666655554443 48999988742 24467
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCC------CcEEEEeCCCCcEEEEEec
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTF 221 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~ 221 (387)
|.+||+ ..+ ....+..+...+..+.|+| ++ +.|+..+.+ ..|.++|+..+........
T Consensus 170 l~~~d~------------~~g-~~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 170 LMRVDL------------KTG-ESTVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp EEEEET------------TTC-CEEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred EEEEEC------------CCC-ceEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 889988 233 3445556777889999999 74 777766653 3788888776554332233
Q ss_pred C--CceeEEEeCCCCCeEEEEcc-CC----cEEEEeccccccccccccceeEeeccccccc---EEEEEEecCCCEEEEE
Q 035621 222 P--CAIMGLALDPTETDFFAAGS-DG----LIYKGLLKYQSRQQMHKGQELVTLANRHDGV---VVSVMMMNEGKNLVSA 291 (387)
Q Consensus 222 ~--~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~ 291 (387)
. ..+...+|+|||+.|+..+. ++ .|++||+.++..... .. ...+... ...++|+|||+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l------~~-~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL------TS-MPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE------EE-ECCEEEEEECTTSSEEEEEECCC---
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE------Ec-CCCceeeeecCCCCeEccCCCcceeE
Confidence 3 35778899999998866544 22 399999987542211 11 1111000 1123799999988753
Q ss_pred ---------eCCCcEEEEECCCccEEE
Q 035621 292 ---------AEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 292 ---------~~dg~i~iwd~~~~~~~~ 309 (387)
..+..|++||+.+++...
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEE
Confidence 456789999999887643
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=6.8e-20 Score=161.63 Aligned_cols=277 Identities=11% Similarity=-0.003 Sum_probs=177.0
Q ss_pred ccccCCCcEEEeeCCC---CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSPE---GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
++|||||++|+..... ..|++||+.+++......++......+.|+|++..++. ++.++.|.+||+.+++...
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~----~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY----VKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE----EETTTEEEEEETTTCCEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE----EEcCCcEEEEECCCCCcEE
Confidence 4699999998776432 36888999888765544433333444889997654432 5567789999998887655
Q ss_pred ccCCCCC-eee-------------------EEeccCCCEEEEe-----cCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621 79 NIPVPEP-VAP-------------------LATTADGSYLFTG-----GLSGNVYAISVPKGDILRSFSAHDKPVSCLKI 133 (387)
Q Consensus 79 ~~~~~~~-v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 133 (387)
....+.. ... ..|+|+++.++.. ..+..|.+||+.+++..... .+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence 4442221 111 3567777776654 35568999999888765544 45677899999
Q ss_pred cC-CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCC--
Q 035621 134 SP-DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMD-- 202 (387)
Q Consensus 134 ~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d-- 202 (387)
+| +++.|+..+.+ ..|.+||+. .. ....+..+ ...+..++|+|++ +.|+..+.+
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------~~-~~~~l~~~~~~~~~~~~~~spdg--~~l~~~~~~~~ 260 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNED------------GS-NVRKIKEHAEGESCTHEFWIPDG--SAMAYVSYFKG 260 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETT------------SC-CCEESSCCCTTEEEEEEEECTTS--SCEEEEEEETT
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECC------------CC-ceeEeeccCCCccccceEECCCC--CEEEEEecCCC
Confidence 99 78877766543 357888772 11 12222222 2357788999885 666665443
Q ss_pred ---CcEEEEeCCCCcEEEEEecCCceeEEEeCC-CCCeEEEEc----------------cCCcEEEEecccccccccccc
Q 035621 203 ---CTCKFWRLLNGTHLSTVTFPCAIMGLALDP-TETDFFAAG----------------SDGLIYKGLLKYQSRQQMHKG 262 (387)
Q Consensus 203 ---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~ 262 (387)
+.|++||+.+++.......+. .. +.|+| +|+.++.++ .+..|++||+..+...
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~----- 333 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ----- 333 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-----
T ss_pred CccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-----
Confidence 449999999887654433332 33 89999 999888754 3478999998764321
Q ss_pred ceeEeecccccc-----------cEEEEEEecCCCEEEEEeC-CCc--EEEEECCCccEEEE
Q 035621 263 QELVTLANRHDG-----------VVVSVMMMNEGKNLVSAAE-DGS--VYIWEIEKRQVVMV 310 (387)
Q Consensus 263 ~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~ 310 (387)
.+ ..+.. .+..++|+|+|+.|+..+. ++. |..+++.+++....
T Consensus 334 -~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 334 -KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp -EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred -Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 11 12222 2566789999998887664 454 44455555554433
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=4.9e-19 Score=154.36 Aligned_cols=238 Identities=9% Similarity=0.074 Sum_probs=165.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCC-CCceeEeccCC-CCCceeEEEcCccceeeeccccCC-------------CCCeE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPS-SGAILAHFSGS-RSPRRGLTFAGKPFIAASHISPTT-------------GSGSV 66 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-------------~d~~v 66 (387)
++|+|+|++|++++.+ .|.+|++. +++........ .+.+..++|+|++..+ .++++. .++.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l--~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI--FLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE--EEEECSSTTCCEEEEEESSSCCEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEE--EEEEecCCcceeccceeecCCceE
Confidence 5789999999988887 89999997 77765433211 1236678999976521 111232 68899
Q ss_pred EEEEcc-CCCcccccC-----CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCC-CCcee--EEcc--CCCCCeEEEEEc
Q 035621 67 HLYNLW-SSTPLHNIP-----VPEPVAPLATTADGSYLFTGG-LSGNVYAISVP-KGDIL--RSFS--AHDKPVSCLKIS 134 (387)
Q Consensus 67 ~vw~~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~~~~~ 134 (387)
.+|++. +++....+. +...+.+++|+|+|++++++. .++.|.+|++. +++.. ..+. .|...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999997 455443332 346789999999999888765 36799999998 67653 2333 245679999999
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccc------eEeee----ccCC------CeEEEE-EeeCCCCceE
Q 035621 135 PDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLM------LQKFV----AHND------SVTAIT-CCIGSFNSII 196 (387)
Q Consensus 135 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~----~~~~------~i~~~~-~~~~~~~~~l 196 (387)
|+|+++++++. ++.|.+|++.. ..+.. +..+. +|.. .+..++ |+|++ ++|
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~~----------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG--~~l 269 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVIDP----------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYM 269 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECT----------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEE
T ss_pred CCCCEEEEEECCCCeEEEEEEeC----------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC--CEE
Confidence 99999888775 68999998731 01111 11111 1222 478899 99885 676
Q ss_pred EEEeCC-C-----cEEEEeCC-CCcEEE---EEe-cCCceeEEEeCC---CCCeEEEEcc-CCcEEEEecccc
Q 035621 197 ISCSMD-C-----TCKFWRLL-NGTHLS---TVT-FPCAIMGLALDP---TETDFFAAGS-DGLIYKGLLKYQ 254 (387)
Q Consensus 197 ~s~~~d-~-----~i~iwd~~-~~~~~~---~~~-~~~~v~~~~~~~---~~~~l~~~~~-dg~i~i~d~~~~ 254 (387)
+++..+ . .|.+|++. +++... .+. ....+..++|+| +|++|++++. ++.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 665542 2 89999996 566443 233 344677899999 8999999987 489999998763
No 168
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.85 E-value=3.3e-18 Score=146.66 Aligned_cols=277 Identities=9% Similarity=0.006 Sum_probs=198.8
Q ss_pred CCCcEEEEeCCCCceeEecc------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeE
Q 035621 16 PEGPITAYNPSSGAILAHFS------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPL 89 (387)
Q Consensus 16 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~ 89 (387)
.++.|.++|.++++....+. ........+.+..+..+.. ...++.|.+||..+++.+..+........+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~-----~~~~~~v~viD~~t~~~~~~i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIV-----VNNSHVIFAIDINTFKEVGRITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEE-----EGGGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEE-----EcCCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence 47899999999998776542 1223367788877655554 346789999999999998888766789999
Q ss_pred EeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-----CCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCcccccCC
Q 035621 90 ATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-----KPVSCLKISPDGSLLISGG--DDGVIATVPIFQLVDEHT 162 (387)
Q Consensus 90 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~ 162 (387)
+++++++..++...++.|.+||+.+++....+.... .....+++ ++..++++. .++.|.++|+
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~-------- 159 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT-------- 159 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEET--------
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC--------
Confidence 999998544444378999999999998877665332 14567777 344555554 4889999998
Q ss_pred CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC----------CcEEEEeCCCCcEEEEEec--CCceeEEEe
Q 035621 163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD----------CTCKFWRLLNGTHLSTVTF--PCAIMGLAL 230 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~ 230 (387)
.+......+... .....+.+.+++ ++++++..+ +.|.++|..+++....+.. ...+..+++
T Consensus 160 ----~t~~~~~~i~~g-~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 160 ----ETDKVVDELTIG-IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp ----TTTEEEEEEECS-SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred ----CCCeEEEEEEcC-CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 344444444432 234567777764 777776654 7899999999988877765 347899999
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEE----eCCCcEEEEECCCc
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSA----AEDGSVYIWEIEKR 305 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~~dg~i~iwd~~~~ 305 (387)
+|+++.++++.. .|++||..+...... .+.......+..++++| ++.++++. ..++.|.+||.. +
T Consensus 233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~-------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 233 NGTRDTLYWINN--DIWRMPVEADRVPVR-------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp CTTSCEEEEESS--SEEEEETTCSSCCSS-------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred ecCCCEEEEEcc--EEEEEECCCCceeee-------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 999999998865 899999876442110 01111245688999999 55566665 578899999998 9
Q ss_pred cEEEEeecccCCCceeEEEEe
Q 035621 306 QVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 306 ~~~~~~~~~~~~~v~~~~~~~ 326 (387)
+.+.++... ..+..++|..
T Consensus 303 ~~~~~i~~G--~~P~~~~~~~ 321 (328)
T 3dsm_A 303 KLIDEFYVG--IIPGAFCWKL 321 (328)
T ss_dssp CEEEEEEEE--ESEEEEEEEC
T ss_pred CEEEEEEec--cCcceEEEec
Confidence 999988743 3566666653
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=5.7e-18 Score=159.56 Aligned_cols=283 Identities=12% Similarity=-0.004 Sum_probs=188.7
Q ss_pred ccccCCCcEEEee--CCCCcEEEEeCCCCceeEeccCCCCCce---------eEEEc--Cccce-eeeccccCCCCCeEE
Q 035621 2 LHHLPCNEVILTS--SPEGPITAYNPSSGAILAHFSGSRSPRR---------GLTFA--GKPFI-AASHISPTTGSGSVH 67 (387)
Q Consensus 2 l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~~~~~~~d~~v~ 67 (387)
++|++++-+++.. +.++...||....+.....+..|...+. ...|+ |++.. ++. +...+..|.
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~---~~~~~~~l~ 105 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF---THFGDQRLY 105 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE---EBTTTCCEE
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE---EECCCCeEE
Confidence 3577776677776 6688899999655555667777776666 66666 75543 221 133466777
Q ss_pred EEEcc--C-CCcccccC-----CCCCeeeEEeccCCCEEEEecCC----------CcEEEEeCCC------CceeEEcc-
Q 035621 68 LYNLW--S-STPLHNIP-----VPEPVAPLATTADGSYLFTGGLS----------GNVYAISVPK------GDILRSFS- 122 (387)
Q Consensus 68 vw~~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~- 122 (387)
++++. . ++...... +...+..++|+|||+.|++++.+ ..|++||+.+ ++. ..+.
T Consensus 106 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~ 184 (662)
T 3azo_A 106 AFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD 184 (662)
T ss_dssp EECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC
T ss_pred EEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe
Confidence 77775 3 44333333 34568899999999999988876 5899999987 554 4555
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEeCCcccccCCCCCCCCc---cceEeeeccCCCeEEEEEeeCC
Q 035621 123 AHDKPVSCLKISPDGSLLISGGDDG--------VIATVPIFQLVDEHTDDKNPDD---LMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 123 ~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
.+...+..++|+|||++|+.++.++ .|++||+.. .+ ........|...+..+.|+|++
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~-----------~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE-----------DGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT-----------TSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC-----------CCcccccEEeCCCCCceEcceEECCCC
Confidence 5567788899999999999887553 799999821 22 2333334457889999999986
Q ss_pred CCceEEEEeCCC--cEEEEeCCCCcEEEEEecCCc---------eeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621 192 FNSIIISCSMDC--TCKFWRLLNGTHLSTVTFPCA---------IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH 260 (387)
Q Consensus 192 ~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 260 (387)
++++++..++ .|.+||+.+++.......... +..++|+|++++++++.. +.+++|.+....
T Consensus 254 --~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~----- 325 (662)
T 3azo_A 254 --SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES----- 325 (662)
T ss_dssp --CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-----
T ss_pred --eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-----
Confidence 6888888888 677777766765443332221 467899999999999998 999999554311
Q ss_pred ccceeEeecccccccEEEE-EEecCCCEEEEEeCCC--cEEEEECCCccEEEE
Q 035621 261 KGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAEDG--SVYIWEIEKRQVVMV 310 (387)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 310 (387)
... ..+..|...+..+ +++++.-++++++.+. .|.+||+.+++....
T Consensus 326 --~~~-~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 326 --GEL-VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp --TEE-EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred --CcE-EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 122 2223456667766 5544333444555554 466667777776543
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=2e-17 Score=139.11 Aligned_cols=239 Identities=13% Similarity=0.156 Sum_probs=171.4
Q ss_pred CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-------CCCeeeEEe-ccCCCEEEEecC-CCc
Q 035621 36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-------PEPVAPLAT-TADGSYLFTGGL-SGN 106 (387)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-------~~~v~~~~~-~~~~~~l~~~~~-dg~ 106 (387)
++-..+.++++++++.+.. +...++.|.+||.. ++....+.. ...+..+++ .++++++++... ++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v----~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIV----ADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECTTCCEEE----EEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEECCCCCEEE----EECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 4555688999998654333 24678999999976 555544432 246788999 467766666533 789
Q ss_pred EEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeE
Q 035621 107 VYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVT 183 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 183 (387)
|.+|| .+++.+..+. .+...+.+++++|+++++++...++.|.+||. ....+..+. .+...+.
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-------------~g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-------------NGNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-------------TSCEEEEEECTTTCSSEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-------------CCCEEEEeCCCCccCCcE
Confidence 99999 5777776664 34467899999999998888778899999986 222333332 3445688
Q ss_pred EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCCCCeEEEEccCC-cEEEEeccccccccc
Q 035621 184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPTETDFFAAGSDG-LIYKGLLKYQSRQQM 259 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~ 259 (387)
.+++.+++ +++++...++.|++||. +++.+..+... ..+..++++++|+++++...++ .|.+|+...
T Consensus 168 ~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g------ 238 (286)
T 1q7f_A 168 GVVVNDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG------ 238 (286)
T ss_dssp EEEECSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS------
T ss_pred EEEECCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC------
Confidence 99998874 78888778999999997 56666666533 5789999999998888887775 999999543
Q ss_pred cccceeEeecc-cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 260 HKGQELVTLAN-RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 260 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
..+..+.. .....+.+++++|+|+++++ +.|+.|++|++....
T Consensus 239 ---~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 239 ---QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ---CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred ---CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 11111111 12234789999999987777 579999999986543
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=9.8e-17 Score=146.17 Aligned_cols=297 Identities=10% Similarity=0.066 Sum_probs=205.9
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccCC
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIPV 82 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~~ 82 (387)
+|.+.++++...++.|.++|..+++.+.++.... .+..+.++|++.++.. ++.++.|.+||+. +++.+..+..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv----~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFV----IGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEE----EETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEE----EcCCCeEEEEECCCCCCcEeEEEec
Confidence 3445677888889999999999999998887443 4678999997654432 5678999999996 7777777777
Q ss_pred CCCeeeEEec----cCCCEEEEecC-CCcEEEEeCCCCceeEEccCC---------------------------------
Q 035621 83 PEPVAPLATT----ADGSYLFTGGL-SGNVYAISVPKGDILRSFSAH--------------------------------- 124 (387)
Q Consensus 83 ~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--------------------------------- 124 (387)
......++|+ |||++++++.. ++++.++|..+.+.+..+...
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 6778899999 69999888764 589999999888776654311
Q ss_pred ----------------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec----
Q 035621 125 ----------------------DKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---- 177 (387)
Q Consensus 125 ----------------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---- 177 (387)
......+.|+|++++++++. .++.|.++|+ .+.+....+..
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~------------~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT------------KEGKLVAIEDTGGQT 386 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET------------TTTEEEEEEECSSSS
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC------------CCCcEEEEEeccCcC
Confidence 01123567889998876665 5788999998 33344433332
Q ss_pred -cCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCC-------CcEEEEEecC-CceeEEEeCCCCCeEEEEcc-----
Q 035621 178 -HNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLN-------GTHLSTVTFP-CAIMGLALDPTETDFFAAGS----- 242 (387)
Q Consensus 178 -~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----- 242 (387)
|.+.-..+ ++|+. +..++++. .+++|.++|..+ .+.++++... ..-..+..+|+++++++...
T Consensus 387 Phpg~g~~~-~~p~~-g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 387 PHPGRGANF-VHPTF-GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp BCCTTCEEE-EETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCccceee-ECCCC-CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 32211112 45553 45555554 468999999987 6778888754 33456789999999999773
Q ss_pred --CCcEEEEeccccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEe-----CCCcEEEEECCCccEEEE
Q 035621 243 --DGLIYKGLLKYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAA-----EDGSVYIWEIEKRQVVMV 310 (387)
Q Consensus 243 --dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~ 310 (387)
.+.|.++|+.+............... +......+..+.|+|+|+.+..+. .++.|.|+|.++++++..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 46999999987411000001011110 011245789999999999877653 378999999999999999
Q ss_pred eecccCCCce
Q 035621 311 LKNELAGSIS 320 (387)
Q Consensus 311 ~~~~~~~~v~ 320 (387)
++...-..++
T Consensus 545 i~~~~~~~P~ 554 (567)
T 1qks_A 545 IKDERLVTPT 554 (567)
T ss_dssp ECCTTCCSEE
T ss_pred eCCCcccCCC
Confidence 9864333333
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=8.6e-18 Score=144.24 Aligned_cols=235 Identities=13% Similarity=0.134 Sum_probs=173.9
Q ss_pred ccccCCCcEEEeeCCC------------------------CcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeec
Q 035621 2 LHHLPCNEVILTSSPE------------------------GPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASH 56 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 56 (387)
++++|+|+++++...+ +.|.+||..+++.+..+. ++...+..+++++++.+..
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v-- 106 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWV-- 106 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEE--
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEE--
Confidence 5789999999988877 479999999898877664 4445688999998655433
Q ss_pred cccCCCCCeEEEEEccCCC-cccccC----------CCCCeeeEEecc-CCCEEEEec-CCCcEEEEeCCCCceeEEccC
Q 035621 57 ISPTTGSGSVHLYNLWSST-PLHNIP----------VPEPVAPLATTA-DGSYLFTGG-LSGNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 123 (387)
+...++.|++|+..... .+..+. +-..+..++++| ++.++++.+ .++.|++|+ .+++.+..+..
T Consensus 107 --~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~ 183 (329)
T 3fvz_A 107 --TDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE 183 (329)
T ss_dssp --EETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred --EECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence 35678999999975442 344332 223688999999 788888876 689999999 57777776642
Q ss_pred C----------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeC
Q 035621 124 H----------DKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIG 190 (387)
Q Consensus 124 ~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~ 190 (387)
. ......++++|+ +.++++...++.|++||. ..+..+..+ ..+...+..++++|.
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~------------~~G~~~~~~~~~~~~~~~~~~~~~pg 251 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT------------DTKEFVREIKHASFGRNVFAISYIPG 251 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET------------TTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC------------CCCcEEEEEeccccCCCcceeeecCC
Confidence 2 234899999998 777777778899999998 334445554 245567788888871
Q ss_pred C----CCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 191 S----FNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 191 ~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
. +++.+++...+..|++||+.+++.+..+. +...+..++++|+|..+++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 0 01223333345689999999999998874 345689999999997777788899999999864
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=8.9e-18 Score=144.15 Aligned_cols=219 Identities=10% Similarity=0.143 Sum_probs=162.4
Q ss_pred CeEEEEEccCCCcccccCC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEc---------cCCCCCeEEE
Q 035621 64 GSVHLYNLWSSTPLHNIPV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSF---------SAHDKPVSCL 131 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~v~~~ 131 (387)
+.|.+||..+++....+.. -..+..++++|+|+++++...++.|++||..... .+..+ ..+...+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 5799999988887665542 2478899999999988888888999999975442 44544 2345578999
Q ss_pred EEcC-CCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEE
Q 035621 132 KISP-DGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 132 ~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~ 199 (387)
+++| +++++++.+ .++.|++||. .+..+..+.. +-.....+++.|+. +.++++.
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~-------------~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d 214 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSP-------------SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVAD 214 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECT-------------TSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcC-------------CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEE
Confidence 9999 788888876 6899999985 2333333322 22347889998873 4788888
Q ss_pred eCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC------CCCeEEEEccCCcEEEEeccccccccccccceeEee--
Q 035621 200 SMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP------TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-- 268 (387)
Q Consensus 200 ~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 268 (387)
..++.|++||..+++.+..+. ....+..++++| +++.+++...+..|++|+..++... ..+
T Consensus 215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~--------~~~~~ 286 (329)
T 3fvz_A 215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII--------DVFKP 286 (329)
T ss_dssp TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE--------EEECC
T ss_pred CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE--------EEEcC
Confidence 889999999999899888885 345788999999 3332223334558999998774322 221
Q ss_pred cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...+...+..++++|+|.++++...++.|++|++..
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 135667799999999998888888999999999764
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=2.6e-17 Score=141.61 Aligned_cols=263 Identities=10% Similarity=0.045 Sum_probs=181.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI- 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~- 80 (387)
++|+|++..++..+.++.++.| .++....+..+...+.+++|++++.+.. ++..++.|.+||..+++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFL----LDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEE----EETTTCEEEEECTTTCCEEEEEE
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEE----EECCCCEEEEEeCCCCcEEEEee
Confidence 5788988888887888999999 3556666777777789999998665433 2567889999999887765443
Q ss_pred CCCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeC------CCc
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGD------DGV 148 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~ 148 (387)
.....+.+++++++|+++++...+ +.|.+||..+++....+. .+...+.+++++|+++++++... .+.
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 355789999999999988877665 689999998877553332 24457899999999987776653 245
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC-CcEEEEE------e
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN-GTHLSTV------T 220 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~------~ 220 (387)
|..+|. ... ....+..+...+..++++|++ + ++++.+.++.|.+||+.+ +..+..+ .
T Consensus 164 l~~~~~------------~~~-~~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 164 VYYVSP------------DFR-TVTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EEEECT------------TSC-CEEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EEEEeC------------CCC-EEEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 555554 111 222233334457889998874 5 445556678999999964 3332211 1
Q ss_pred cC--CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-----cccccEEEEEEecCCCEEEEEeC
Q 035621 221 FP--CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-----RHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 221 ~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
.. ..+..++++++|+++++...++.|.+||.... ....+.. +|...+.+++|+|+++.|+.++.
T Consensus 229 ~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~---------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 229 FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY---------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC---------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC---------EEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 12 36788999999988777777889999987431 1111110 12226889999999877766555
Q ss_pred CC
Q 035621 294 DG 295 (387)
Q Consensus 294 dg 295 (387)
++
T Consensus 300 ~g 301 (333)
T 2dg1_A 300 DI 301 (333)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=2.4e-17 Score=138.64 Aligned_cols=228 Identities=11% Similarity=0.148 Sum_probs=168.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc------CCCCCceeEEEc-CccceeeeccccCC-CCCeEEEEEccC
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS------GSRSPRRGLTFA-GKPFIAASHISPTT-GSGSVHLYNLWS 73 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~~~~~~~~~~-~d~~v~vw~~~~ 73 (387)
++++|+|+++++...++.|.+||.. ++.+..+. ++...+..+++. +++.+... .. .++.|.+|| .+
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~----~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT----ERSPTHQIQIYN-QY 108 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE----ECGGGCEEEEEC-TT
T ss_pred EEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEE----cCCCCCEEEEEC-CC
Confidence 5688999988888888999999976 66666553 234568899994 54433322 22 378999999 56
Q ss_pred CCcccccCC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621 74 STPLHNIPV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVI 149 (387)
Q Consensus 74 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i 149 (387)
++.+..+.. ...+..++++++|+++++...++.|.+||. +++.+..+. .+...+..++++|+++++++...++.|
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 187 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 187 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence 666655542 356899999999998888778899999996 466666553 345678999999999988887889999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecC---C
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFP---C 223 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~---~ 223 (387)
++||. ....+..+..+ ...+..+++.+++ +++++...++ .|.+||. +++.+..+... .
T Consensus 188 ~~~~~-------------~g~~~~~~~~~g~~~~p~~i~~d~~G--~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 251 (286)
T 1q7f_A 188 KVFNY-------------EGQYLRQIGGEGITNYPIGVGINSNG--EILIADNHNNFNLTIFTQ-DGQLISALESKVKHA 251 (286)
T ss_dssp EEEET-------------TCCEEEEESCTTTSCSEEEEEECTTC--CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred EEEcC-------------CCCEEEEEccCCccCCCcEEEECCCC--CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence 99997 22233444332 3567889988764 7888887775 9999995 56677776532 3
Q ss_pred ceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 224 AIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
.+..++++|+|+++++ +.++.|++|++..
T Consensus 252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 4789999999986666 5689999998765
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=1e-17 Score=145.43 Aligned_cols=261 Identities=8% Similarity=0.016 Sum_probs=176.7
Q ss_pred ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC------CCCceeEEEcCccceeeeccccCCCCCe
Q 035621 2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS------RSPRRGLTFAGKPFIAASHISPTTGSGS 65 (387)
Q Consensus 2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 65 (387)
++|||||+++++++ .++.|.+||..+++.+.++... ......++++|++.++... ....++.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~--n~~~~~~ 132 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQ--NASPATS 132 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEE--EESSSEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEE--CCCCCCe
Confidence 57999999998875 3677999999999988877532 3457889999976544320 0123689
Q ss_pred EEEEEccCCCcccc-cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCC-CceeE------EccCCCCCeEEEEEcCC
Q 035621 66 VHLYNLWSSTPLHN-IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPK-GDILR------SFSAHDKPVSCLKISPD 136 (387)
Q Consensus 66 v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~------~~~~~~~~v~~~~~~~~ 136 (387)
|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++... .+.....++ .+.++|+
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 99999999988777 665433 224566765 5677788899999999865 55441 222222222 3344677
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec------c----CCCeEEEEEeeCCCCceEEEEe------
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------H----NDSVTAITCCIGSFNSIIISCS------ 200 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~~~l~s~~------ 200 (387)
+..++..+.++.+.++|+... .......+.. + ......++++|++ +.++++..
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGD----------EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEG 279 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSS----------SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTT
T ss_pred CCEEEEEeCCCeEEEEEecCC----------CceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcc
Confidence 777777888999999998321 1011111110 0 0111226788875 23344333
Q ss_pred ----CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 201 ----MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 201 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
..+.|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.+||..+... ..+.. ...+....
T Consensus 280 ~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l------~~~~~-i~~~G~~P 350 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP------KLLRT-IEGAAEAS 350 (361)
T ss_dssp CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSC------EEEEE-ETTSCSSE
T ss_pred cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc------eeeEE-eccCCCCc
Confidence 13489999999999999998777 999999999999999887 9999999987310 22222 22456778
Q ss_pred EEEEEecCCC
Q 035621 277 VSVMMMNEGK 286 (387)
Q Consensus 277 ~~~~~s~~~~ 286 (387)
..++++|+|+
T Consensus 351 ~~~~~~p~G~ 360 (361)
T 2oiz_A 351 LQVQFHPVGG 360 (361)
T ss_dssp EEEEECCCSC
T ss_pred EEEEecCCCC
Confidence 8999999985
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=1.1e-16 Score=151.47 Aligned_cols=280 Identities=8% Similarity=-0.031 Sum_probs=185.2
Q ss_pred ccCCCcEEEeeCCCC-----cEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEc
Q 035621 4 HLPCNEVILTSSPEG-----PITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNL 71 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~ 71 (387)
.+|+|++++....++ .|++.+...++....+ .+|...+..++|+|++..++-... .|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 568898887765433 2455554445433322 245556889999998765552221 4666789999999
Q ss_pred cCCCcc-cccCCCCCeeeEEeccCCCEEEEecCCCc-------------EEEEeCCCCc----eeEEccCCCCCeEEEEE
Q 035621 72 WSSTPL-HNIPVPEPVAPLATTADGSYLFTGGLSGN-------------VYAISVPKGD----ILRSFSAHDKPVSCLKI 133 (387)
Q Consensus 72 ~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~v~~~~~ 133 (387)
.+++.+ ...........++|+|||+.|+.++.+.. |++|++.+++ ++.....|...+..+.|
T Consensus 155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 998865 21111112378999999999999887765 9999998876 33334445667899999
Q ss_pred cCCCCEEEEEeCCC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---CCCcEE
Q 035621 134 SPDGSLLISGGDDG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---MDCTCK 206 (387)
Q Consensus 134 ~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~ 206 (387)
+|||++|+.++.++ .|.+|+. ... ....+..+...+....+ +++ .+++... .++.|.
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~------------~~~-~~~~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRP------------GEK-DFRLLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVF 298 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECT------------TCS-SCEEEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcC------------CCC-ceEEeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEE
Confidence 99999988887666 5666654 222 34445556666666655 554 4444444 257899
Q ss_pred EEeCCCCcE---EEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621 207 FWRLLNGTH---LSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 207 iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
+||+.+++. ...+.+ ...+..++++ ++..+++...|+..++|.+... +.....+...+.+.+..+++
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~ 370 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-------GKPVRTVQLPGVGAASNLMG 370 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-------CCEEEECCCSSSSEECCCBS
T ss_pred EEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCeeEEecCCCCeEEEEeec
Confidence 999987753 333333 3457788888 6677888888998888876631 11222222123567788889
Q ss_pred ecCCCEEEEE----eCCCcEEEEECCCccE
Q 035621 282 MNEGKNLVSA----AEDGSVYIWEIEKRQV 307 (387)
Q Consensus 282 s~~~~~l~s~----~~dg~i~iwd~~~~~~ 307 (387)
+|+++.++.. ...++|++||+.+++.
T Consensus 371 s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 371 LEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 9999877632 3457899999998874
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=9.4e-18 Score=159.77 Aligned_cols=290 Identities=9% Similarity=0.015 Sum_probs=182.0
Q ss_pred ccccCCCcEEEeeCCC---------CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621 2 LHHLPCNEVILTSSPE---------GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~ 72 (387)
++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|+|++...+. + .++.|++|++.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~----~-~~~~i~~~~~~ 140 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAY----V-WNNDIYVKIEP 140 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEE----E-ETTEEEEESST
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEE----E-ECCeEEEEECC
Confidence 4679999999998876 56679999988865 46677888999999997765543 2 57899999998
Q ss_pred CCCcccccCCC--C-----------------CeeeEEeccCCCEEEEecCCC----------------------------
Q 035621 73 SSTPLHNIPVP--E-----------------PVAPLATTADGSYLFTGGLSG---------------------------- 105 (387)
Q Consensus 73 ~~~~~~~~~~~--~-----------------~v~~~~~~~~~~~l~~~~~dg---------------------------- 105 (387)
+++..+..... . ....+.|||||+.|+.++.|.
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 87755432211 1 123589999999999875221
Q ss_pred --------cEEEEeCCC---Cc--eeEEcc------CCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCC
Q 035621 106 --------NVYAISVPK---GD--ILRSFS------AHDKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHT 162 (387)
Q Consensus 106 --------~i~i~d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~ 162 (387)
.|++||+.+ ++ ....+. +|...+..++|+|||+.++.... +..|.+||+......
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~-- 298 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR-- 298 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE--
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc--
Confidence 488899988 73 222333 37778999999999996665533 336999998321000
Q ss_pred CCCCCCccceEee--eccCCCeE-----EEEEeeCCCCceEE-EEeC-C--CcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621 163 DDKNPDDLMLQKF--VAHNDSVT-----AITCCIGSFNSIII-SCSM-D--CTCKFWRLLNGTHLSTVTFPCAIMGLALD 231 (387)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~~~i~-----~~~~~~~~~~~~l~-s~~~-d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 231 (387)
........+ ..|...+. ...|+|++ +.++ ..+. + ..|.+||+..++..........+..+..
T Consensus 299 ----~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG--~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~- 371 (740)
T 4a5s_A 299 ----WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG--NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA- 371 (740)
T ss_dssp ----EEECGGGCEEEECSSSCSSSSSCCCCEECTTS--SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-
T ss_pred ----cceeEEEEeeeccCCceEccCcCCCceEcCCC--CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-
Confidence 000011111 34544443 67888886 5555 5543 3 4688889887665433334445555442
Q ss_pred CCCCeEEE-Ecc----CCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC---CcEEEE
Q 035621 232 PTETDFFA-AGS----DGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED---GSVYIW 300 (387)
Q Consensus 232 ~~~~~l~~-~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw 300 (387)
++++.|+. +.. .+...+|.+..... .....+. .........+.|+|++++++..... ..+.++
T Consensus 372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~------~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 372 LTSDYLYYISNEYKGMPGGRNLYKIQLIDY------TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTEE------EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EeCCEEEEEEecCCCCCceeEEEEEECCCC------CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 34555544 443 24455555443211 0100111 1234568899999999987755433 468899
Q ss_pred ECCCccEEEEee
Q 035621 301 EIEKRQVVMVLK 312 (387)
Q Consensus 301 d~~~~~~~~~~~ 312 (387)
+..+++.+..+.
T Consensus 446 ~~~~~~~~~~l~ 457 (740)
T 4a5s_A 446 SSVNDKGLRVLE 457 (740)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCcEEEEec
Confidence 988887766554
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=1.8e-16 Score=136.29 Aligned_cols=263 Identities=14% Similarity=0.129 Sum_probs=176.3
Q ss_pred CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621 39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117 (387)
Q Consensus 39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 117 (387)
..+.++.|+++... ++..+.++.++.|. ++....+. +...+.+++|+++|++++++..++.|.+||..+++.
T Consensus 6 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS----AVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGC----SSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccc----eeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 34778888885332 33356788888882 33333332 445678999999999888888889999999988876
Q ss_pred eEEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCC
Q 035621 118 LRSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGS 191 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 191 (387)
......+...+.+++++|+++++++...+ +.|.+||.. .......+. .+...+..+++.|++
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~------------~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN------------GDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT------------SCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC------------CCEEEEEEccCccCCcccceEECCCC
Confidence 65444566789999999999988877666 689999873 222211111 234568889988874
Q ss_pred CCceEEEEeC------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccc-cccccccc
Q 035621 192 FNSIIISCSM------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQS-RQQMHKGQ 263 (387)
Q Consensus 192 ~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~~ 263 (387)
+++++... .+.|..+|..+++..........+..++|+|+++.++++ ..++.|++|+..... ..... ..
T Consensus 147 --~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-~~ 223 (333)
T 2dg1_A 147 --GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-GA 223 (333)
T ss_dssp --CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-EE
T ss_pred --CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc-cc
Confidence 66666553 356677776655544333334567899999999866554 568899999986421 11100 00
Q ss_pred eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC--C---CceeEEEE
Q 035621 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA--G---SISEMVIA 325 (387)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~---~v~~~~~~ 325 (387)
.......++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. + .+.+++|+
T Consensus 224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 111111122 46788999999998888878899999998 5777777754322 1 57888885
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.80 E-value=8.3e-17 Score=137.84 Aligned_cols=295 Identities=14% Similarity=0.127 Sum_probs=200.2
Q ss_pred cccCCCcEEEeeCC-----CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceee--eccc----cCCCCCeEEEEEc
Q 035621 3 HHLPCNEVILTSSP-----EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA--SHIS----PTTGSGSVHLYNL 71 (387)
Q Consensus 3 ~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~----~~~~d~~v~vw~~ 71 (387)
...|+++.+++... ++.|.+.|..+++.+.++.....+ . ++++|++.... +.+. -+..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 35789988877755 679999999999999999765555 4 99999665332 2110 0124678999999
Q ss_pred cCCCcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621 72 WSSTPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 72 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 141 (387)
.+++.+..+..+ .....++|+|||++++++.. ++.|.++|+.+++.+.++.... . ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence 999988877532 25778999999999998864 6899999999999998885322 1 223333456777
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCCccceEe----eeccCCCeE-EEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--
Q 035621 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK----FVAHNDSVT-AITCCIGSFNSIIISCSMDCTCKFWRLLNGT-- 214 (387)
Q Consensus 142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-- 214 (387)
+.+.||.+.+.++... ...... +.....++. ...|.+ .++++++ .+.+|++.+.|+.+..
T Consensus 194 ~~~~DG~~~~v~~~~~-----------g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~~-vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTE-----------GTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVW-PTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEETTSCEEEEECCSS-----------SCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred EECCCCCEEEEECCCC-----------CeEEEeecceeccccccccccceeEc-CCCcEEE-EeCCCEEEEEECCCCcce
Confidence 8888999888887321 111111 001111221 124432 2244444 5568999999997654
Q ss_pred EEEEEe-----------cCCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeeccccc
Q 035621 215 HLSTVT-----------FPCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 215 ~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
....+. .+.....++++|+++.+++... .+.|.++|..+. +.+..+.- .
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------kv~~~i~v--g 330 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEM--G 330 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE--E
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--------eEEEEEEC--C
Confidence 333332 1234455788999999888753 256899999883 33333322 2
Q ss_pred ccEEEEEEecCCC-EEEEE-eCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 274 GVVVSVMMMNEGK-NLVSA-AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 274 ~~v~~~~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
..+.++++++|++ +|++. ..++.|.++|..+++.++++... +..+.|+++..
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~--~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCCEEEECC
T ss_pred CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC--CCCceeEECCc
Confidence 3688999999997 66654 55899999999999999999754 56778888765
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=4e-17 Score=141.30 Aligned_cols=262 Identities=9% Similarity=0.012 Sum_probs=173.1
Q ss_pred CCcEEEeeC---------CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccC-CCCCeEEEEEccCCCc
Q 035621 7 CNEVILTSS---------PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPT-TGSGSVHLYNLWSSTP 76 (387)
Q Consensus 7 ~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~d~~v~vw~~~~~~~ 76 (387)
||+.++... .++.|++||+.+++... + ..+..++|+|++..++..-... .....|.+|++.+++.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~ 97 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence 777776642 25779999998877543 3 4578899999775443210000 1233588888888776
Q ss_pred ccccCCCCCeeeEEeccCCCEEEEecCC---------------------------CcEEEEeCCCCceeEEccCCCCCeE
Q 035621 77 LHNIPVPEPVAPLATTADGSYLFTGGLS---------------------------GNVYAISVPKGDILRSFSAHDKPVS 129 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~v~ 129 (387)
......+. +..++|+|||+.|+.++.+ ..|.+||+.+++.+..+.. . .+.
T Consensus 98 ~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 98 KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC
T ss_pred EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc
Confidence 55555555 9999999999998887632 5799999988876455544 3 788
Q ss_pred EEEEcCCCCEEEEEeCCC-------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621 130 CLKISPDGSLLISGGDDG-------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 130 ~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
.++|+|++ +++++..++ ...+|.+. ......+..+ ..+..+ +|++ +.|+.++.+
T Consensus 175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-------------~~~~~~l~~~-~~~~~~--spdg--~~l~~~~~~ 235 (347)
T 2gop_A 175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-------------DGKEEKMFEK-VSFYAV--DSDG--ERILLYGKP 235 (347)
T ss_dssp EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-------------TTEEEEEEEE-ESEEEE--EECS--SCEEEEECC
T ss_pred cccCCCCe-EEEEEecccccccccccccEEEeC-------------CCceEEeccC-cceeeE--CCCC--CEEEEEEcc
Confidence 99999999 887776542 44566551 1122333334 445444 7775 777766643
Q ss_pred --------CcEEEEeCCCCcEEEEEe-cCCceeE-EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc
Q 035621 203 --------CTCKFWRLLNGTHLSTVT-FPCAIMG-LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH 272 (387)
Q Consensus 203 --------~~i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 272 (387)
..|.+|| +++...... +...+.. +.|+ ++ .+++++.++.+++| +..+ .. ..+. .+
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g--------~~-~~~~-~~ 300 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG--------EI-KPIA-KG 300 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS--------SE-EEEE-CS
T ss_pred ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC--------ce-EEEe-cC
Confidence 3688888 555433222 3456775 8999 88 88888999999999 8731 11 1222 34
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcE-EEEECCCccEEEEeecc
Q 035621 273 DGVVVSVMMMNEGKNLVSAAEDGSV-YIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 273 ~~~v~~~~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~ 314 (387)
...|.+++|+| .++++++.++.. .+|.+. ++ ...+..+
T Consensus 301 ~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~ 339 (347)
T 2gop_A 301 RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDY 339 (347)
T ss_dssp SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCT
T ss_pred CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccc
Confidence 67899999999 677777777665 777776 55 3445544
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=2.4e-17 Score=155.29 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=175.6
Q ss_pred EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCee---------eEEec--cCCCE-E
Q 035621 32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVA---------PLATT--ADGSY-L 98 (387)
Q Consensus 32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~---------~~~~~--~~~~~-l 98 (387)
..+.+|...+..++++++..+.... ..+.++...||....+.....+. +...+. ...|+ |||+. |
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAP--RPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEE--ETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEec--CcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 3456788889999999875544431 01567889999864444333333 444555 56565 99998 7
Q ss_pred EEecC-CCcEEEEeCC--C-CceeEEccC-----CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEeCCcccc
Q 035621 99 FTGGL-SGNVYAISVP--K-GDILRSFSA-----HDKPVSCLKISPDGSLLISGGDD----------GVIATVPIFQLVD 159 (387)
Q Consensus 99 ~~~~~-dg~i~i~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 159 (387)
+.++. +..|.++++. . ++ ...+.. |...+..++|+|||+.|++++.+ ..|++||+.....
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 76553 5678888875 3 43 445554 56778999999999999998877 5799999832000
Q ss_pred cCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCC--------CcEEEEeCC-CC---cEEEEEe-cCCce
Q 035621 160 EHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMD--------CTCKFWRLL-NG---THLSTVT-FPCAI 225 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~v 225 (387)
........+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ +...... +...+
T Consensus 174 -------~~~~~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 174 -------ADRSAVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI 244 (662)
T ss_dssp -------TCGGGSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred -------ccCCceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence 0002234444 555677788999885 888877754 379999998 56 3333333 35789
Q ss_pred eEEEeCCCCCeEEEEccCC--cEEEEeccccccccccccceeEeeccccccc--------EEEEEEecCCCEEEEEeCCC
Q 035621 226 MGLALDPTETDFFAAGSDG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGV--------VVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 226 ~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~dg 295 (387)
..++|+|||++++++..++ .|++||...+... .+...+... +..++|+|++++++++.. +
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~---------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT---------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE---------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCcee---------ecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 9999999999888887788 5555555442211 111112111 567899999999999988 9
Q ss_pred cEEEE--ECCCccEEEEeecccCCCceeE
Q 035621 296 SVYIW--EIEKRQVVMVLKNELAGSISEM 322 (387)
Q Consensus 296 ~i~iw--d~~~~~~~~~~~~~~~~~v~~~ 322 (387)
.++|| |+.+++ +..+..+ .+.+..+
T Consensus 315 ~~~l~~~d~~~~~-~~~l~~~-~~~~~~~ 341 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAAGP-WTEWAAT 341 (662)
T ss_dssp SCEEEEEETTTTE-EEECCSS-CCEEEEE
T ss_pred ccEEEEEECCCCc-EEEecCC-CCeEEEE
Confidence 99999 655555 5566554 3344433
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=4.7e-17 Score=143.40 Aligned_cols=260 Identities=10% Similarity=-0.013 Sum_probs=172.5
Q ss_pred EEEeCCCCceeEeccCCCCC-----ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe-eeEEeccC
Q 035621 21 TAYNPSSGAILAHFSGSRSP-----RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV-APLATTAD 94 (387)
Q Consensus 21 ~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~ 94 (387)
...|..+++.+..+..+... +..++|+|++..++.. .....+..+.+||+.+++........... ..+.|+||
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~-~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFA-GDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEE-ECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEE-EecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 35588888888888765444 7888999976543321 01123457889999887765544444443 34889999
Q ss_pred CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCcEE
Q 035621 95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSC-------------------LKISPDGSLLISG-----GDDGVIA 150 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~ 150 (387)
|++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.. ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 999999988889999999888766555544432222 3457777766554 3566789
Q ss_pred EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCC------CcEEEEeCCCCcEEEEEec--
Q 035621 151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTF-- 221 (387)
Q Consensus 151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~-- 221 (387)
+||+. ... ...+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++.......
T Consensus 172 ~~d~~------------~g~-~~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (396)
T 3c5m_A 172 KVDIE------------TGE-LEVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE 236 (396)
T ss_dssp EEETT------------TCC-EEEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred EEECC------------CCc-EEeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence 99882 222 233345677889999998 53 555555443 4688999876653332222
Q ss_pred CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEe---
Q 035621 222 PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAA--- 292 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~--- 292 (387)
...+..++|+|+|+.|+.++.+ +.|++||+.++.... +.. . . ... +.|+| +|+++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~------l~~-~---~-~~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE------VMV-M---P-PCS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE------EEE-C---C-SEE-EEEECSSSSEEEEEECCC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE------eee-C---C-CCC-CCccCCCCceEEEecCCc
Confidence 2357889999999988777553 349999987643211 111 1 1 122 88999 999888754
Q ss_pred -------------CCCcEEEEECCCccEE
Q 035621 293 -------------EDGSVYIWEIEKRQVV 308 (387)
Q Consensus 293 -------------~dg~i~iwd~~~~~~~ 308 (387)
.++.|++||+.+++..
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBCC
T ss_pred ceeeccccccccCCCCcEEEEecccCceE
Confidence 3478999999988754
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=1e-15 Score=145.11 Aligned_cols=286 Identities=11% Similarity=0.028 Sum_probs=182.2
Q ss_pred ccCCCcEEEeeCCC-----CcEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEc
Q 035621 4 HLPCNEVILTSSPE-----GPITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNL 71 (387)
Q Consensus 4 ~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~ 71 (387)
.+|+|++++....+ +.+++.+...++....+ .+|...+..++|+|++..++.... .|+....|++||+
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 35788877754322 24555555445433222 234345888999998765553222 1222348999999
Q ss_pred cCCCcccccCCCCCeeeEEeccCCCEEEEecCCCc----------------EEEEeCCCCce----eEEccCCCCCeEEE
Q 035621 72 WSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGN----------------VYAISVPKGDI----LRSFSAHDKPVSCL 131 (387)
Q Consensus 72 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~----~~~~~~~~~~v~~~ 131 (387)
.+++..........+..++|+|||+.|+.++.++. |++|++.+++. +.....|...+..+
T Consensus 159 ~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 159 DGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (710)
T ss_dssp TTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence 99877653322334678999999999999887765 99999988762 22223355668899
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-C---
Q 035621 132 KISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-D--- 202 (387)
Q Consensus 132 ~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d--- 202 (387)
.|+|||++|+.++. +..|++||+...... . ........+..+...+.. .|++++ ..|+..+. +
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~-~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~ 310 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG----I-TGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPN 310 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----S-CSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTT
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccc----c-CCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCC
Confidence 99999999887765 568999998320000 0 001134555566666554 467765 55554443 2
Q ss_pred CcEEEEeCCCCcE--EEEE-ecCC--ceeEEEeCCCCCeEEEEccCCcE--EEEeccccccccccccceeEeeccccccc
Q 035621 203 CTCKFWRLLNGTH--LSTV-TFPC--AIMGLALDPTETDFFAAGSDGLI--YKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 203 ~~i~iwd~~~~~~--~~~~-~~~~--~v~~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
+.|.+||+.++.. ...+ .+.. .+..++|++++.++++...++.. ++|++..+ ..... +..+.+.
T Consensus 311 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------~~~~~-l~~~~~~ 381 (710)
T 2xdw_A 311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------ALLKI-FPLEVGS 381 (710)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------CEEEE-ECCCSSE
T ss_pred CEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------CEEEe-cCCCCce
Confidence 3699999987742 2333 3333 67889999877788888888854 55555332 11222 2245677
Q ss_pred EEEEEEecCCCEEEEE----eCCCcEEEEECCCcc
Q 035621 276 VVSVMMMNEGKNLVSA----AEDGSVYIWEIEKRQ 306 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~ 306 (387)
+..+.++|+++.++.. ...+.|+.||+.+++
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8899999998766532 245789999999887
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.77 E-value=1.3e-14 Score=122.56 Aligned_cols=269 Identities=10% Similarity=0.040 Sum_probs=183.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.+... ...++.|..|+.. ++. ..+
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFT----ENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCE-EEE
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEe----CCCCCeEEEECCC-CcE-EEE
Confidence 4678899988877767899999987 55433 22334566899999886544332 4457889999875 332 222
Q ss_pred C---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 81 P---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 81 ~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
. ....+..+++.++|.+.++...++.|..||. +++.... ...+...+..+++.+++++.++...++.|..||. .
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 2 3356889999999988887777889999998 5554432 2334567899999999988777777788999987 1
Q ss_pred ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPT 233 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~ 233 (387)
..........+...+..+++.++ +.++++...++.|..||. +++.. .+.. ...+.+++++++
T Consensus 171 -----------g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 171 -----------GDITEFKIPTPASGPVGITKGND--DALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp -----------CCEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECST
T ss_pred -----------CcEEEeeCCCCCCcceeEEECCC--CCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCC
Confidence 11111112233456778888776 467776666889999999 66643 3432 367899999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccccccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
|+.+++...++.|..||... . .... ...+...+.++++ +++.++++.. .+.|..++.++++
T Consensus 236 g~l~v~~~~~~~i~~~d~~g-~---------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSNN-I---------IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TCEEEEETTTTEEEEEETTT-E---------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCEEEeccCCceEEEECCCC-c---------eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 98666666788999999732 1 1111 1234567899999 8888777655 5677778877654
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.77 E-value=5.4e-16 Score=129.02 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=178.3
Q ss_pred cccCCCCCeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEEEE
Q 035621 57 ISPTTGSGSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCLKI 133 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~ 133 (387)
+++++.++.|.+||.++++.+..+.... .+.++.++|+|+++++ .++.|..||. +++.+..+..+. ..+.++.+
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 3447899999999999999998887654 6899999999998883 4678999998 899999888653 57889999
Q ss_pred cCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621 134 SPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCSMDCTCK 206 (387)
Q Consensus 134 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~d~~i~ 206 (387)
.|+|+++++.+. ++.+..+|. .++.+..+.. +......+++.++ ++++++...++.|.
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~-------------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~--G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNM-------------KGEVLSKTEFETGIERPHAQFRQINKNKK--GNYLVPLFATSEVR 149 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECT-------------TSCEEEEEEECCSCSSGGGSCSCCEECTT--SCEEEEETTTTEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeC-------------CCCEEEEEeccCCCCcccccccCceECCC--CCEEEEecCCCEEE
Confidence 999999999887 777777765 3333333321 1123334444444 58999999999999
Q ss_pred EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
.||.. ++.+.++..+..+.++...++|+.++++..++.|..+|..++..........+ .......+..++..++|.
T Consensus 150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI---EGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS---BSCCCSEEEEEEECTTSC
T ss_pred EECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC---CCccccccccceEcCCCC
Confidence 99988 99999998777788889999999999988888999999887543222111000 001123478899999999
Q ss_pred EEEEEeCC--------CcEEEEEC-CCccEEEEeecccC-CCceeE
Q 035621 287 NLVSAAED--------GSVYIWEI-EKRQVVMVLKNELA-GSISEM 322 (387)
Q Consensus 287 ~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~~~~-~~v~~~ 322 (387)
.+++.... +..+++++ .+++.+.++..... +.++.+
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 88887421 24466666 67899988875432 344443
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=3.8e-16 Score=132.00 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=162.8
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++|+|+|+ +++++..++.|..||..++ ...+..+...+.++++++++.+... ...++.|.+||..+++.....
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~----~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIAC----SHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEE----ETTTTEEEEECSTTCCEEEEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEE----ecCCCeEEEEcCCCCcEEEEe
Confidence 46899998 7888888999999999877 5666667778999999997654432 455689999999887654332
Q ss_pred CC-----CCCeeeEEeccCCCEEEE----ec-------------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 81 PV-----PEPVAPLATTADGSYLFT----GG-------------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 81 ~~-----~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
.. ...+..++++|+|+++++ |+ ..+.|..++.. ++. ..+..+......++|+|+++
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~ 184 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGN 184 (296)
T ss_dssp CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSC
T ss_pred eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCC
Confidence 21 235678999999998887 33 13467777655 443 34445667789999999999
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCCccc---eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM---LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
.+++.+.++.|.+|++.. .+.. ...+..+...+..+++.+++ +++++. ++.|.+||.. ++.
T Consensus 185 ~lv~~~~~~~i~~~~~~~-----------~g~~~~~~~~~~~~~~~p~~i~~d~~G--~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 185 LLVSDTGDNATHRYCLNA-----------RGETEYQGVHFTVEPGKTDGLRVDAGG--LIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEEEETTTTEEEEEEECS-----------SSCEEEEEEEECCSSSCCCSEEEBTTS--CEEEEE--TTEEEEECTT-SCE
T ss_pred EEEEeCCCCeEEEEEECC-----------CCcCcCCCeEeeCCCCCCCeEEECCCC--CEEEEc--CCeEEEECCC-CCE
Confidence 887777889999999831 1111 12222344556678887774 666555 7899999986 778
Q ss_pred EEEEecCCceeEEEe-CCCCCeEEEEccCCcEEEEeccc
Q 035621 216 LSTVTFPCAIMGLAL-DPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 216 ~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
+..+..+..+.+++| .|+++.|++++.+ .+..++..+
T Consensus 249 ~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 249 LGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNV 286 (296)
T ss_dssp EEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSC
T ss_pred EEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccc
Confidence 888875544999999 6899999998876 344445544
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.3e-15 Score=126.89 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=160.5
Q ss_pred ccccCCCcEEE-eeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 2 LHHLPCNEVIL-TSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 2 l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++++|+|++++ +...++.|.+||..++........+...+.++++++++.+... .. ++.|.+||....... .+
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET-TTEEEEECTTCSCCE-EC
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC-CCEEEEEeCCCceEe-ee
Confidence 46789999777 5577889999998665543322334456889999986543322 33 789999998655433 23
Q ss_pred C--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621 81 P--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158 (387)
Q Consensus 81 ~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 158 (387)
. ....+..+++.++|+++++...++.|.+|+..+.............+.+++++++++++++...++.|.+||...
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-- 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-- 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--
Confidence 2 225688999999999777777788999998665544333323334678999999999777777788999999732
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF 237 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 237 (387)
.........+...+..+++.+++ .++++...++.|.+||........... ....+.+++++++|+.+
T Consensus 181 ----------~~~~~~~~~~~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 181 ----------NNQVVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp ----------CCEEECCCSSCCSEEEEEECTTC--CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred ----------CceEeecccCCCCceEEEECCCC--CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 22222122233567788887764 777777778899999987654332211 23568999999999988
Q ss_pred EEEccCCcEEEEecccc
Q 035621 238 FAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~ 254 (387)
++...++.|+++++...
T Consensus 249 v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEGGGTEEEEECCCGG
T ss_pred EEECCCCEEEEEcCCCc
Confidence 88888999999998763
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=1.1e-15 Score=127.21 Aligned_cols=211 Identities=11% Similarity=0.082 Sum_probs=165.9
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP- 83 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~- 83 (387)
..+++|++++.++.|++||.++|+.+.++..+. ..+.++.+.|++.+.. +.++.|..||. +++.+..+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv------s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF------SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE------ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE------eCCCCEEEECC-CCCEEEEEcCCC
Confidence 346799999999999999999999999998776 4689999999776554 24788999998 88888888754
Q ss_pred -CCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccC------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 84 -EPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSA------HDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 84 -~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
..+.++.+.++|+++++.+. ++.+..+|. +++.+..+.. +......+++.++|+++++...++.|..||.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~- 153 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP- 153 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT-
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC-
Confidence 46888999999999999877 778888885 7777766542 1124556778999999999999999999998
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------CceeEE
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------CAIMGL 228 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~ 228 (387)
. ++.+.++.... ...++...++ ++++++++.++.|..+|..+++.+.++... ..+..+
T Consensus 154 -----------~-G~~~w~~~~~~-~~~~~~~~~~--g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 154 -----------N-GQLLNSVKLSG-TPFSSAFLDN--GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp -----------T-SCEEEEEECSS-CCCEEEECTT--SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred -----------C-CCEEEEEECCC-CccceeEcCC--CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 3 66666665543 3445555554 588998888889999999999999998632 126778
Q ss_pred EeCCCCCeEEEE
Q 035621 229 ALDPTETDFFAA 240 (387)
Q Consensus 229 ~~~~~~~~l~~~ 240 (387)
+..++|..+++.
T Consensus 219 ~~~~~G~i~v~~ 230 (276)
T 3no2_A 219 FPLQNGGLYICN 230 (276)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEe
Confidence 888888777766
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.7e-15 Score=126.08 Aligned_cols=241 Identities=9% Similarity=0.008 Sum_probs=165.2
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL 118 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 118 (387)
...++++++++.+.. .+...++.|.+|+..+...... ......+.++++.++|+++++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYV---TSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ- 99 (270)
T ss_dssp CEEEEEECTTCCEEE---EECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-
T ss_pred CccceEECCCCCEEE---EccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-
Confidence 577899988654332 0246788999998765543222 12235688999999998666655 88999999866543
Q ss_pred EEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621 119 RSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII 197 (387)
Q Consensus 119 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (387)
..+. .....+..++++|+++++++...++.|.+|+... .............+..+++.+++ ++++
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~p~~i~~~~~g--~l~v 165 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS------------KTQTVLPFTGLNDPDGVAVDNSG--NVYV 165 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC------------CSCEECCCCSCCSCCCEEECTTC--CEEE
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC------------ceeEeeccccCCCceeEEEeCCC--CEEE
Confidence 3332 2336789999999999777777788999997621 11111112223356778888764 6777
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 198 SCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 198 s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
+...++.|.+||........... ....+..++++++|..+++...++.|.+|+...... ......+...+
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p 236 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTP 236 (270)
T ss_dssp EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCE
T ss_pred EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCc
Confidence 77778899999988765443322 226788999999997777777789999999865221 11111233568
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
.+++++++|+++++...++.|+++++...+.+
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 99999999998888889999999998877654
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.75 E-value=3.6e-14 Score=123.16 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=183.9
Q ss_pred cCCCcEEEeeCC--CC---cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cc----ccCCCCCeEEEEEccC
Q 035621 5 LPCNEVILTSSP--EG---PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HI----SPTTGSGSVHLYNLWS 73 (387)
Q Consensus 5 s~~~~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~d~~v~vw~~~~ 73 (387)
.|+++++++... .+ .|.++|..+++.+.++.....+ .++++|++..+.. .+ .-+..++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 477877776653 23 7899999999998888755544 9999997644322 10 0112468899999998
Q ss_pred CCcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCC-CEEE
Q 035621 74 STPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDG-SLLI 141 (387)
Q Consensus 74 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~ 141 (387)
.+.+..+... .....++|+|||++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence 8877766543 23568999999999998864 47899999 99998877 6532 2 24455554 4566
Q ss_pred EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEE
Q 035621 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLST 218 (387)
Q Consensus 142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 218 (387)
+.+.||.+.++|. ....... ...........++ ....+.++. +.+++. +..+.+.+.|+.... .+..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~-~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGA-------GLVGAMLTAAQNLLTQPAQANKS-GRIVWP-VYSGKILQADISAAGATNKAP 251 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEE-------EeccccccCCcceeecceeEecC-CEEEEE-cCCceEEEEeccCCcceEeee
Confidence 7778999999987 3211100 0000000111221 223445553 233443 367899999987553 2233
Q ss_pred Eec-----------CCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccccccEE
Q 035621 219 VTF-----------PCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV 277 (387)
Q Consensus 219 ~~~-----------~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (387)
+.. +.....+.++|+++.++++.. ++.|.++|..+. .....+. -.....
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------~vv~~i~--~g~~p~ 321 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------QTSSQIS--LGHDVD 321 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--------EEEEEEE--CCCCcC
Confidence 321 233445889999998888653 357999998873 2223332 233588
Q ss_pred EEEEecCCC-EEEEEe-CCCcEEEEECCCccEEEEe
Q 035621 278 SVMMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 278 ~~~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 311 (387)
+++|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999 777776 5899999999999999884
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=3.3e-15 Score=126.16 Aligned_cols=244 Identities=13% Similarity=0.051 Sum_probs=167.4
Q ss_pred ceeEeccCCCCCceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 29 AILAHFSGSRSPRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
..+..+..+.....+++|+|++. +.. ++..++.|..|+..++ ...+. ....+.+++++++|+++++...++.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~----~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIF----SDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEE----EEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEE----EeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 33444555556678999999654 222 2567899999999877 33333 4567899999999998887777789
Q ss_pred EEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEE----Ee-------------CCCcEEEEeCCcccccCCCCC
Q 035621 107 VYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLIS----GG-------------DDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~ 165 (387)
|.+||..+++........ ...+..++++|+|+++++ ++ ..+.|..++.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~----------- 160 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP----------- 160 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC-----------
Confidence 999999888765433211 234678999999998887 33 1234555544
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcE---EEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTH---LSTVT-FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~ 240 (387)
. .....+..+......++|+|++ +.+++.+.++.|.+||+. +++. ...+. ....+..++++++|+++++.
T Consensus 161 --~-g~~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 161 --D-GTLSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp --T-SCEEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred --C-CCEEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 1 2234445566677899998885 667777788999999997 5554 23332 23456789999999866665
Q ss_pred ccCCcEEEEeccccccccccccceeEeecccccccEEEEEE-ecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (387)
++.|.+|+... ..+.. ...+.. +++++| +|+++.|++++.+ .+.-++.++.++.
T Consensus 236 --~~~v~~~~~~g---------~~~~~-~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 236 --GDGVHVLTPDG---------DELGR-VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp --TTEEEEECTTS---------CEEEE-EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred --CCeEEEECCCC---------CEEEE-EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 78899999753 12222 223445 889999 5899988888876 4556676666554
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=6.6e-16 Score=133.59 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=150.8
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---C--cEEEEeCCCCceeEEccCCCCCeEEEEEcCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---G--NVYAISVPKGDILRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (387)
.++.|.+||+.+++.... ..+..++|+|||++|+..+.+ + .|.+|++.+++....... .. +..++|+|+
T Consensus 41 ~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspd 114 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTT
T ss_pred ccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCC
Confidence 367899999988765333 568889999999999887643 2 488889888776554443 33 999999999
Q ss_pred CCEEEEEeCC---------------------------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621 137 GSLLISGGDD---------------------------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 137 ~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
++.|+.++.+ ..|.+||+ ..+..+..+.. . .+..+.|+|
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~------------~~~~~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT------------ESEEVIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEET------------TTTEEEEEEEE-E-TTCEEEEET
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC------------CCCeEEeeecC-C-CcccccCCC
Confidence 9988887642 46888888 33333233433 3 778889998
Q ss_pred CCCCceEEEEeCCC-------cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC--------CcEEEEecccc
Q 035621 190 GSFNSIIISCSMDC-------TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD--------GLIYKGLLKYQ 254 (387)
Q Consensus 190 ~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~ 254 (387)
+ + +++++..++ ...+|.+.+++....... ..+.. ++|+|+.|+.++.+ ..|++|| .+
T Consensus 181 d--g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 181 D--K-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp T--E-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred C--e-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 7 4 777665542 334444445543332233 44444 39999998887654 3677777 31
Q ss_pred ccccccccceeEeecccccccEEE-EEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 255 SRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
....+...+...+.. +.|+ ++ ++++++.++.+++| +.+++....+. + .+.|.++.+++
T Consensus 253 ---------~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~-~~~v~~~~~s~ 311 (347)
T 2gop_A 253 ---------EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-G-RHWIMGFDVDE 311 (347)
T ss_dssp ---------CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-S-SSEEEEEEESS
T ss_pred ---------ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-C-CCeEEeeeeeC
Confidence 122233456677886 8999 88 88999999999999 88776644443 3 55777777765
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=6.4e-15 Score=126.16 Aligned_cols=240 Identities=8% Similarity=0.027 Sum_probs=166.8
Q ss_pred CCCCCeEEEEEccCCCcccccC-------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621 60 TTGSGSVHLYNLWSSTPLHNIP-------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK 132 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 132 (387)
++.++.|.++|.++++....+. .......+.+. +++..++...++.|.+||..+++.+.++. .......++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 4568999999999887655431 22346677774 34455555667899999999999988885 356789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-----CCeEEEEEeeCCCCceEEEEe-CCCcEE
Q 035621 133 ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-----DSVTAITCCIGSFNSIIISCS-MDCTCK 206 (387)
Q Consensus 133 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~s~~-~d~~i~ 206 (387)
++++++.+++...++.|.+||. .+......+.... .....+++ .+ +.++++.. .++.|.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~------------~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINP------------KTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRIL 155 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEET------------TTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEE
T ss_pred EeCCCeEEEEECCCCeEEEEEC------------CCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEE
Confidence 9998854444448899999998 3444444444322 13445666 32 34555544 488999
Q ss_pred EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC----------CcEEEEeccccccccccccceeEeecccccccE
Q 035621 207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD----------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
++|+.+++.+..+........++++|+|++++++..+ +.|+++|..+... ...+.......+
T Consensus 156 viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--------~~~~~~~~g~~p 227 (328)
T 3dsm_A 156 KIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--------EKQFKFKLGDWP 227 (328)
T ss_dssp EEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--------EEEEECCTTCCC
T ss_pred EEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--------EEEEecCCCCCc
Confidence 9999999999888877778899999999877766554 7899999876321 111111113468
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE-eecccCCCceeEEEEe
Q 035621 277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV-LKNELAGSISEMVIAT 326 (387)
Q Consensus 277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~ 326 (387)
..++|+|++++|.++.. .|.+||..+++.... +.......+.++++.+
T Consensus 228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 99999999998887754 899999999886421 1111124577777765
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=2.8e-14 Score=130.10 Aligned_cols=237 Identities=13% Similarity=0.046 Sum_probs=173.5
Q ss_pred ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEc-
Q 035621 58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKIS- 134 (387)
Q Consensus 58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~- 134 (387)
++...++.|.++|..+++.+..+.....+..+.|+|||+++++++.++.|.+||+. +++.+..+... .....++|+
T Consensus 171 V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~ 249 (567)
T 1qks_A 171 VTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSK 249 (567)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECC
T ss_pred EEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEcc
Confidence 33678899999999999999888887788899999999999999999999999995 78888877653 346899999
Q ss_pred ---CCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCC-CeEEEEEeeCCCCceEEEE
Q 035621 135 ---PDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HND-SVTAITCCIGSFNSIIISC 199 (387)
Q Consensus 135 ---~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~~l~s~ 199 (387)
|||+++++++. ++.+.++|. .+.+.+..+.. |.. .+..+..+++. ..+++..
T Consensus 250 ~~~pDGk~l~v~n~~~~~v~ViD~------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~ 316 (567)
T 1qks_A 250 MEGWEDKYAIAGAYWPPQYVIMDG------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNV 316 (567)
T ss_dssp STTCTTTEEEEEEEETTEEEEEET------------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEE
T ss_pred ccCCCCCEEEEEEccCCeEEEEEC------------CCCcEEEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEe
Confidence 69998887775 589999998 34444444332 222 56777777764 4667777
Q ss_pred eCCCcEEEEeCCCCcE--EEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEe-eccccccc
Q 035621 200 SMDCTCKFWRLLNGTH--LSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGV 275 (387)
Q Consensus 200 ~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~ 275 (387)
..+|.|.++|....+. +..+........+.|+|++++++++. .++.|.++|..+....... .. -...|.+.
T Consensus 317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-----~vgg~~Phpg~ 391 (567)
T 1qks_A 317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-----DTGGQTPHPGR 391 (567)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-----ECSSSSBCCTT
T ss_pred cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-----eccCcCCCCcc
Confidence 7789999999987643 33444566788899999999988776 4889999999875322111 00 01134432
Q ss_pred EEEEEEecCCC-EEEEEe-CCCcEEEEECCC-------ccEEEEeecc
Q 035621 276 VVSVMMMNEGK-NLVSAA-EDGSVYIWEIEK-------RQVVMVLKNE 314 (387)
Q Consensus 276 v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~ 314 (387)
-..+ ++|++. .++++. .++.|.++|..+ .+.++++...
T Consensus 392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 392 GANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred ceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 2222 678744 445543 468999999988 6788888764
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.72 E-value=2e-14 Score=136.94 Aligned_cols=280 Identities=8% Similarity=-0.026 Sum_probs=174.4
Q ss_pred ccCCCcEEEeeCCCCc---EEEE--eCC---CCceeEec------cCCCCCceeEEEcCccceeeecccc-CCCCCeEEE
Q 035621 4 HLPCNEVILTSSPEGP---ITAY--NPS---SGAILAHF------SGSRSPRRGLTFAGKPFIAASHISP-TTGSGSVHL 68 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~---i~iw--d~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~v 68 (387)
.+|+|++++....++. -.+| +.. .++....+ .+|...+..++|+|++..++..... |+....|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4689988876654332 4444 443 33332211 2233367889999987655542222 222257999
Q ss_pred EEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCc--------------EEEEeCCCCc----eeEEccCCCCCeEE
Q 035621 69 YNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGN--------------VYAISVPKGD----ILRSFSAHDKPVSC 130 (387)
Q Consensus 69 w~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~----~~~~~~~~~~~v~~ 130 (387)
||+.+++.+........+..++|+|| +.|+.+..++. |++|++.+++ .+.....+...+..
T Consensus 194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99999987543222222468999999 98888876553 8999997765 22222333345889
Q ss_pred EEEcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCc--cceEeeeccCCCeEEEEEeeCCCCceEEEEeC--
Q 035621 131 LKISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDD--LMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-- 201 (387)
Q Consensus 131 ~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-- 201 (387)
+.|+|||++|+..+.++ .|++||+. .. .....+..+...+.... .+++ +.|+..+.
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------------~~~~~~~~~l~~~~~~~~~~~-~~dg--~~l~~~s~~~ 337 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVT------------NGKIGPVTALIPDLKAQWDFV-DGVG--DQLWFVSGDG 337 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEE------------TTEECCCEEEECSSSSCEEEE-EEET--TEEEEEECTT
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECC------------CCCCcccEEecCCCCceEEEE-eccC--CEEEEEECCC
Confidence 99999999888877544 79999882 22 11344555555555443 3654 66666655
Q ss_pred --CCcEEEEeCCCC--cEEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621 202 --DCTCKFWRLLNG--THLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV 276 (387)
Q Consensus 202 --d~~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (387)
++.|.+||+.++ .....+.+ ...+..++++ ++..+++...++..++|.+... +.....+...+.+.+
T Consensus 338 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v 409 (741)
T 1yr2_A 338 APLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-------GKPAGAVSLPGIGSA 409 (741)
T ss_dssp CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-------SCEEEECBCSSSCEE
T ss_pred CCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCceeeccCCCCeEE
Confidence 345999999875 23333333 3446677777 5567777788888888766531 112222222346678
Q ss_pred EEEEEecCCCEEEE----EeCCCcEEEEECCCccE
Q 035621 277 VSVMMMNEGKNLVS----AAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 277 ~~~~~s~~~~~l~s----~~~dg~i~iwd~~~~~~ 307 (387)
..+.++|+++.|+. ....++|++||+.+++.
T Consensus 410 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 410 SGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 89999999886652 23457899999998873
No 197
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3.1e-15 Score=141.89 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=161.5
Q ss_pred ccccCCCcEEEeeCCCC-----cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC-------------
Q 035621 2 LHHLPCNEVILTSSPEG-----PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS------------- 63 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d------------- 63 (387)
++|||||++||.+..++ .|++||+.+++.+.....+. .+..++|+|++..+.. ++.+
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~----~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFY----NAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEE----EECCCCSSCCSSSCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEE----EEECCcccccccccccc
Confidence 47999999998765433 89999999998766432222 2678999997543322 2222
Q ss_pred ---CeEEEEEccCCCcc--cccC---CCCCeeeEEeccCCCEEEEecC-----CCcEEEEeCCC------Cc-eeEEccC
Q 035621 64 ---GSVHLYNLWSSTPL--HNIP---VPEPVAPLATTADGSYLFTGGL-----SGNVYAISVPK------GD-ILRSFSA 123 (387)
Q Consensus 64 ---~~v~vw~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~ 123 (387)
..|++|++.+++.. ..+. ++..+..+.|+|||++|+..+. +..|++||+.+ +. ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 34999999877532 2222 2345788999999999988764 56899999976 43 3555656
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEE
Q 035621 124 HDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIII 197 (387)
Q Consensus 124 ~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~ 197 (387)
+...+.. .|+|+|+.|+..+.. +.|.+||+... .......+..|.. .+..+.++++ +.+++
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~--~~lv~ 351 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP----------EESKWKVLVPEHEKDVLEWVACVRS--NFLVL 351 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC----------CGGGCEEEECCCSSCEEEEEEEETT--TEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC----------CcccceeccCCCCCCeEEEEEEEcC--CEEEE
Confidence 6666655 488888877766553 35899998321 1112344555544 6777888744 47888
Q ss_pred EEeCCCc--EEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeEEEEcc----CCcEEEEeccccc
Q 035621 198 SCSMDCT--CKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQS 255 (387)
Q Consensus 198 s~~~d~~--i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~ 255 (387)
+...|+. |.+||+.+++.+..+.. ...+..++++|+++.++.... .+.++.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 66778777887777764 456888999999987765432 5789999987744
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=6.7e-13 Score=111.99 Aligned_cols=258 Identities=10% Similarity=0.028 Sum_probs=173.7
Q ss_pred cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621 35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-P-VPEPVAPLATTADGSYLFTGGLSGNVYAISV 112 (387)
Q Consensus 35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 112 (387)
..+...+.++++.+++.+... ...++.|..||.. ++..... . ....+..+++.++|.+.++...++.|..||.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~----~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWIT----QHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCcCCCccceEECCCCCEEEE----ecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 344566899999986554332 3457899999987 5433211 1 3467899999999998887777888999997
Q ss_pred CCCcee-EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621 113 PKGDIL-RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 113 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
. ++.. ..+......+.++++.++++++++...++.|..||.. ..........+...+..+++.++
T Consensus 86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~------------g~~~~~~~~~~~~~~~~i~~~~~- 151 (299)
T 2z2n_A 86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD------------GKIREYELPNKGSYPSFITLGSD- 151 (299)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT------------CCEEEEECSSTTCCEEEEEECTT-
T ss_pred C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC------------CCEEEecCCCCCCCCceEEEcCC-
Confidence 6 4432 2222345678999999999888877778899999871 11111112223456788888766
Q ss_pred CCceEEEEeCCCcEEEEeCCCCcEEEE-Ee-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621 192 FNSIIISCSMDCTCKFWRLLNGTHLST-VT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
+.++++...++.|..||. +++.... .. ....+..+++++++..+++...++.|.+|+. .+... ....
T Consensus 152 -g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--------~~~~ 220 (299)
T 2z2n_A 152 -NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--------EFKI 220 (299)
T ss_dssp -SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--------EEEC
T ss_pred -CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--------EEEC
Confidence 477777767789999998 6665432 12 2356889999999987777767889999998 42211 1112
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee-cccCCCceeEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK-NELAGSISEMVI 324 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~ 324 (387)
..+...+.+++++++|+++++...++.|..||. +++. ..+. ......+.++++
T Consensus 221 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF 274 (299)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE
T ss_pred CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe
Confidence 234567899999999997777667889999998 4543 3332 112235666666
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.70 E-value=3.6e-13 Score=113.68 Aligned_cols=269 Identities=10% Similarity=0.046 Sum_probs=180.7
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-c
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-N 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~ 79 (387)
++++++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.+... ...++.|..||.. ++... .
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFT----ENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEE
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEE----ecCCCeEEEECCC-CCeEEec
Confidence 4577899988887778999999987 55443 23333456889999886544332 4457889999987 54321 1
Q ss_pred cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621 80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL 157 (387)
Q Consensus 80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 157 (387)
.. ....+..+++.++|++.++...++.|..+|.. ++... .+......+.++++.+++++.++...++.|..+|...
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g- 176 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG- 176 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-
T ss_pred CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC-
Confidence 11 23568899999999888877778899999987 65543 2333456789999999999776666678899998611
Q ss_pred cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-e-cCCceeEEEeCCCCC
Q 035621 158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-T-FPCAIMGLALDPTET 235 (387)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~ 235 (387)
.........+...+..+++.++ ++++++....+.|..||. +++..... . ....+.+++++++|+
T Consensus 177 -----------~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 177 -----------KLEEYPLPTNAAAPVGITSGND--GALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp -----------CEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred -----------cEEEeeCCCCCCCcceEEECCC--CCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence 1111112233456778888765 467766666778999998 55543321 1 245688999999998
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.+++...++.|..++... ... ..........+.+++++++|+++++.. . .|..+|.+
T Consensus 243 l~v~~~~~~~i~~~~~~g-~~~--------~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 243 IWFTEWGANQIGRITNDN-TIQ--------EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEEETTTTEEEEECTTS-CEE--------EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEeccCCCeEEEECCCC-cEE--------EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 766666678999998732 111 111122345678899999998666655 4 67766653
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.68 E-value=3.4e-14 Score=123.93 Aligned_cols=276 Identities=13% Similarity=0.110 Sum_probs=182.3
Q ss_pred CCCcEEEeeCC-C----CcEEEEeCCCCceeEeccCCCCCceeEEEcCcccee--eecc----ccCCCCCeEEEEEccCC
Q 035621 6 PCNEVILTSSP-E----GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIA--ASHI----SPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 6 ~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~d~~v~vw~~~~~ 74 (387)
|+++++++... + +.|.++|..+++.+.++.....+ .++++|++..+ ++.. ..+..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46665555443 2 79999999999999999765555 89999965433 2210 01124678999999999
Q ss_pred CcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEE
Q 035621 75 TPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISG 143 (387)
Q Consensus 75 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 143 (387)
+.+..+... .....+.++|||++++++.. ++.|.++|+.+++.+..+..... ....|++ +.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 988777542 34678999999999999864 57899999999999888763221 2233332 455666
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCCccceE----eeeccCCCe-EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--
Q 035621 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQ----KFVAHNDSV-TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL-- 216 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-- 216 (387)
+.||.+.+.++.. ..... .+.....++ ..+.+.+++ ..++..+..+.+.+.|+......
T Consensus 236 ~~dG~~~~V~~~~------------~~v~~~~~~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 236 CRDGSLARVDFAD------------GETKVTNTEVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFR 301 (426)
T ss_dssp ETTSSEEEEECCT------------TCCEEEECCCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred cCCCCEEEEECCC------------CcEEEEeeeeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEe
Confidence 6777776666611 11110 111111111 123455554 44445566789999998765422
Q ss_pred EEEec-----------CCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeeccccccc
Q 035621 217 STVTF-----------PCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 217 ~~~~~-----------~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
..+.. +.....++++|+++.+++... ++.|.++|..+.. .+..+. -...
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------vv~~I~--vg~~ 371 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------RINKIE--LGHE 371 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------EEEEEE--EEEE
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------EEEEEE--CCCC
Confidence 11111 122233789999998888753 3579999998732 333332 1235
Q ss_pred EEEEEEecCCC-EEEEEe-CCCcEEEEECCCccEEEEe
Q 035621 276 VVSVMMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 276 v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 311 (387)
...+.|+|||+ ++++.. .++.|.++|+.+++.++++
T Consensus 372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999999999 888877 5899999999999999997
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=1.1e-13 Score=117.72 Aligned_cols=236 Identities=10% Similarity=0.054 Sum_probs=159.9
Q ss_pred ccccCCCcEEEe-------eCCCCcEEEEeCCCCceeEecc----CCCCCceeEEEcCc-cceeeeccccCCCCCeEEEE
Q 035621 2 LHHLPCNEVILT-------SSPEGPITAYNPSSGAILAHFS----GSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLY 69 (387)
Q Consensus 2 l~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw 69 (387)
++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ +.+.. ++..+.|.+|
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-----~~~~~~l~~~ 97 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-----ADMRLGLLVV 97 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-----EETTTEEEEE
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-----EECCCCEEEE
Confidence 468899988888 6778899999988877643222 24466889999986 54322 2234478999
Q ss_pred EccCCCcccc-cCC-----CCCeeeEEeccCCCEEEEecCC---------------CcEEEEeCCCCceeEEccCCCCCe
Q 035621 70 NLWSSTPLHN-IPV-----PEPVAPLATTADGSYLFTGGLS---------------GNVYAISVPKGDILRSFSAHDKPV 128 (387)
Q Consensus 70 ~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~v 128 (387)
|.+ ++.... ... ...+.++++.++|++.++...+ +.|..|+.. ++..... .+....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~ 174 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP 174 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCc
Confidence 987 654333 221 1358899999999887776554 568888865 5543332 233456
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCC
Q 035621 129 SCLKIS----PDGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMD 202 (387)
Q Consensus 129 ~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d 202 (387)
..++++ |+++.++.+ ..++.|.+||+...... ........+..+. .....+++.++ ++++++...+
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~------~~~~~~~~~~~~~~~~p~~i~~d~~--G~l~v~~~~~ 246 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI------ENKKVWGHIPGTHEGGADGMDFDED--NNLLVANWGS 246 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE------EEEEEEEECCCCSSCEEEEEEEBTT--CCEEEEEETT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc------ccceEEEECCCCCCCCCCceEECCC--CCEEEEEcCC
Confidence 889999 999765555 56789999987310000 0001222233333 45677888776 4788887788
Q ss_pred CcEEEEeCCCCcEEEEEecC-CceeEEEeCCCCCeEEEE-ccCCcEEEEeccc
Q 035621 203 CTCKFWRLLNGTHLSTVTFP-CAIMGLALDPTETDFFAA-GSDGLIYKGLLKY 253 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 253 (387)
+.|.+||..+++.+..+..+ ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999999878777777644 678999999999966555 5578899998865
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.62 E-value=1.5e-14 Score=124.48 Aligned_cols=179 Identities=8% Similarity=0.019 Sum_probs=131.5
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----------eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----------ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
.+++.+++++...++++|+.++ +.+|++.+.+ ..... .+.. |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3689999999999999999875 6679864332 11222 3556 999999 88999998 88999999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP 232 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 232 (387)
|+... ........|..++.++.+.+. .+++++.||.|.+||+.+++... ....|.+++|+|
T Consensus 112 dv~sl------------~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp 172 (388)
T 1xip_A 112 DLEEL------------SEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN 172 (388)
T ss_dssp ESSST------------TCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS
T ss_pred Echhh------------hccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC
Confidence 99443 233445567777887765533 38888999999999999887653 446899999999
Q ss_pred CCCeEEEEccCCcEEEEecccccc--c-cccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSR--Q-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
+| +++|..||.+++|+...... . .......+ .-..+|...|.+++|.+++.++++
T Consensus 173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~-~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL-EELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH-HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred Cc--eEEEEcCCcEEEEcCCCccccccceecCCccc-ccccCCCeeEEEEEEecCCeEEEE
Confidence 99 78899999999998876431 1 11000000 000137788999999999998886
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=5.2e-13 Score=113.58 Aligned_cols=240 Identities=9% Similarity=-0.008 Sum_probs=154.9
Q ss_pred CCCceeEEEcCccceeee---ccccCCCCCeEEEEEccCCCcccccC-----CCCCeeeEEeccC-CCEEEEecCCCcEE
Q 035621 38 RSPRRGLTFAGKPFIAAS---HISPTTGSGSVHLYNLWSSTPLHNIP-----VPEPVAPLATTAD-GSYLFTGGLSGNVY 108 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~---~~~~~~~d~~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 108 (387)
-....+++|++++.+... .......++.|..||..+++...... +...+..++++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 334678899875533221 00003467899999987776543222 2356889999999 66555544 44799
Q ss_pred EEeCCCCceeEE-ccC----CCCCeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCcccccCCCCCCCC
Q 035621 109 AISVPKGDILRS-FSA----HDKPVSCLKISPDGSLLISGGDD---------------GVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 109 i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~ 168 (387)
+||.. ++.... ... ....+.++++++++++.++...+ +.|..||. .
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~- 161 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT------------D- 161 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT------------T-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC------------C-
Confidence 99987 665433 221 12358899999999887776655 45666654 1
Q ss_pred ccceEeeeccCCCeEEEEEe----eCCCCceE-EEEeCCCcEEEEeCC-CCcE-----EEEEecC--CceeEEEeCCCCC
Q 035621 169 DLMLQKFVAHNDSVTAITCC----IGSFNSII-ISCSMDCTCKFWRLL-NGTH-----LSTVTFP--CAIMGLALDPTET 235 (387)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~l-~s~~~d~~i~iwd~~-~~~~-----~~~~~~~--~~v~~~~~~~~~~ 235 (387)
. ....+..+......++++ +++ +.+ ++...++.|.+||+. +++. ...+... ..+..++++++|+
T Consensus 162 g-~~~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 162 G-QMIQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp S-CEEEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred C-CEEEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 1 122223334456788888 663 444 455567899999986 4432 1122211 5688999999998
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCC
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEK 304 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~ 304 (387)
.+++...++.|.+||..++... .. ...+...+.+++|+|+++.| ++...++.|..|++..
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~~--------~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQPK--------MR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCS--------EE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCEEEEEcCCCCcEe--------EE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8887777889999998743211 11 12345678999999999955 4555678899999875
No 204
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.62 E-value=5.6e-13 Score=125.01 Aligned_cols=288 Identities=12% Similarity=0.139 Sum_probs=184.2
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+..+++++.++.|+.+|..+|+.+.++..+...- ..+++.. ..++.++.|+.|..+|..+|+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK------GKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET------TEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC------CEEEEEccCCEEEEEECCCCCE
Confidence 5567777788999999999999988876433210 1122222 2334467899999999999998
Q ss_pred ccccCCC-C--CeeeEEecc---CCCEEEEec------CCCcEEEEeCCCCceeEEccCC--C-----------------
Q 035621 77 LHNIPVP-E--PVAPLATTA---DGSYLFTGG------LSGNVYAISVPKGDILRSFSAH--D----------------- 125 (387)
Q Consensus 77 ~~~~~~~-~--~v~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~--~----------------- 125 (387)
+..+... . ....+..+| ++ .++++. .+|.|..||.++|+.+..+... .
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 8766542 1 111112222 44 455553 3689999999999988766421 0
Q ss_pred ------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCcccccCCCCCCCCccceEe
Q 035621 126 ------------KPVSCLKISPDGSLLISGGDDGV-------------------IATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 126 ------------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
.....++++|+..+++.+..++. |..+|. .+++.+-.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~------------~TG~~~W~ 290 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA------------DTGEYVWH 290 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET------------TTCCEEEE
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc------------cCCceeEe
Confidence 01125788898889999888764 888888 44555544
Q ss_pred eec--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC---------------------
Q 035621 175 FVA--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC--------------------- 223 (387)
Q Consensus 175 ~~~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------- 223 (387)
++. |. .+........++. ...++.++.+|.++++|..+|+.+.......
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 433 21 1122222222320 1378899999999999999999886544211
Q ss_pred -------------------ceeEEEeCCCCCeEEEEccC-----------------------------------------
Q 035621 224 -------------------AIMGLALDPTETDFFAAGSD----------------------------------------- 243 (387)
Q Consensus 224 -------------------~v~~~~~~~~~~~l~~~~~d----------------------------------------- 243 (387)
....++++|+...+++...+
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 01126888888888876432
Q ss_pred ----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621 244 ----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI 319 (387)
Q Consensus 244 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 319 (387)
|.|+.||+.+++... .. .+..++..-.+...+.+++.|+.||.|+.||.++|+++.+++......-
T Consensus 451 ~~~~g~l~A~D~~tG~~~W--------~~--~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~ 520 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAW--------EV--PYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMA 520 (689)
T ss_dssp TTCEEEEEEEETTTTEEEE--------EE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcceeEEEEECCCCCeEe--------Ec--cCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCccc
Confidence 567777777643221 11 1222233335566788999999999999999999999999986544333
Q ss_pred eeEEE
Q 035621 320 SEMVI 324 (387)
Q Consensus 320 ~~~~~ 324 (387)
+.+.+
T Consensus 521 ~p~ty 525 (689)
T 1yiq_A 521 APVTY 525 (689)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 44444
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=8.3e-14 Score=131.71 Aligned_cols=217 Identities=11% Similarity=0.029 Sum_probs=142.2
Q ss_pred CeeeEEeccCCCEEEE-----ecCCCcEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeCCCc---------
Q 035621 85 PVAPLATTADGSYLFT-----GGLSGNVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGDDGV--------- 148 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~--------- 148 (387)
.+..++|||||++|+. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 5889999999999984 3445689999999988651 1111222 67899999999999988776
Q ss_pred ----EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----cEEEEeCCCCcEEEEEe
Q 035621 149 ----IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----TCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 149 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~ 220 (387)
|++|++.... .....+.....+...+..+.|+|++ ++|+..+.++ .|.+||..+++......
T Consensus 200 ~~~~v~~~~l~t~~--------~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 200 GYTTIRYHTLGTEP--------SKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp GGCEEEEEETTSCG--------GGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred CCCEEEEEECCCCc--------hhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 9999983210 0012333344455678899999885 7777666655 67777766665444444
Q ss_pred cCCceeEEEeCCCCCeEEEEcc----CCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCEEEEEeCCC
Q 035621 221 FPCAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
....+....+ ++|. ++..+. ++.|++||+..+... ....+...+ ...+..++|+ ++.++++...|+
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg 340 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA 340 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 5555566666 5666 544443 578999998763210 012222223 4567888888 677888899999
Q ss_pred cEEEEECC-CccEEEEeecccCCCceeE
Q 035621 296 SVYIWEIE-KRQVVMVLKNELAGSISEM 322 (387)
Q Consensus 296 ~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 322 (387)
..++|.+. +++.+..+..+..+.+..+
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~ 368 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLPGVGAASNL 368 (695)
T ss_dssp EEEEEEEETTCCEEEECCCSSSSEECCC
T ss_pred EEEEEEEeCCCCeeEEecCCCCeEEEEe
Confidence 88888665 4666666654433444444
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.62 E-value=1e-12 Score=115.70 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=155.9
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCcccc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHN 79 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~ 79 (387)
|+|+|+++++++...++.|++||..+++........ .... ++|+++...+. .+..++ .|.+++...+.....
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~----~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVY----SIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEE----EEBSSTTCEEEEEEGGGTTCEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEE----EEecCCCceEEEEEcCCCceeEE
Confidence 578899998888888899999999887766555442 3334 89998654221 133333 899998876654333
Q ss_pred c----C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCe--EEEEEcCC-CCEEEEEeCCC
Q 035621 80 I----P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPV--SCLKISPD-GSLLISGGDDG 147 (387)
Q Consensus 80 ~----~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~l~~~~~dg 147 (387)
+ . ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 3 2 345688999999655666677788999999987764332 22222222 39999995 55666666788
Q ss_pred cEEEEeCCcccccCCCCCCCCccceEeeecc---------------CCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCC
Q 035621 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAH---------------NDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLL 211 (387)
Q Consensus 148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~ 211 (387)
.|+.|+.... ...+.++ -.....+++.+++ +++++-+ .++.|+.||+.
T Consensus 290 ~I~~~~~~g~--------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 290 SVYKITPDGE--------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG--NFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EEEEECTTCC--------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC--CEEEEETTTTCEEEEEETT
T ss_pred EEEEEecCCC--------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC--CEEEEeCCCCCEEEEEECC
Confidence 8999987321 1222222 1346789988875 7777777 78999999988
Q ss_pred CCcEEEEEec---------------CCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 212 NGTHLSTVTF---------------PCAIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 212 ~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
++........ -..+..+++++++.++++-..++.|+.+++
T Consensus 354 ~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 8765443332 135889999999877777777888887765
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=2e-11 Score=102.87 Aligned_cols=257 Identities=8% Similarity=-0.005 Sum_probs=171.1
Q ss_pred CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621 37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK 114 (387)
Q Consensus 37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 114 (387)
....+.++++.+++.+... ...++.|.+||.. ++... ... ....+..+++.+++++.++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~----~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFT----QHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEE----cCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 4456889999886544332 4467899999987 44332 111 22568899999999887777667889999987
Q ss_pred CceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce-EeeeccCCCeEEEEEeeCCC
Q 035621 115 GDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML-QKFVAHNDSVTAITCCIGSF 192 (387)
Q Consensus 115 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 192 (387)
++... .+......+.++++.++++++++...++.|..+|.. .... ..+......+..+++.+++
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-------------g~~~~~~~~~~~~~~~~i~~d~~g- 157 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-------------GTIYEYDLPNKGSYPAFITLGSDN- 157 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-------------SCEEEEECSSTTCCEEEEEECTTS-
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-------------CCEEEccCCCCCCCceeEEECCCC-
Confidence 55432 222234678999999999888877778889999872 1111 1122234567888887764
Q ss_pred CceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621 193 NSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
+++++...++.|..||. +++... +.. ...+..+++++++..+++....+.|.+++... .. .....
T Consensus 158 -~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~--------~~~~~ 225 (300)
T 2qc5_A 158 -ALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EI--------SEYDI 225 (300)
T ss_dssp -SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CE--------EEEEC
T ss_pred -CEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cE--------EEEEC
Confidence 66666666788999998 555443 332 34688999999997777766778899998732 11 11111
Q ss_pred ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
..+...+.+++++++|+++++...++.|..|+. +++............+.++++.+
T Consensus 226 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 226 PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK 281 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT
T ss_pred CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC
Confidence 234566899999999997777767789999998 45443221111223566666543
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.61 E-value=6.5e-13 Score=124.32 Aligned_cols=279 Identities=10% Similarity=0.106 Sum_probs=183.6
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----------ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----------RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+..|++++.++.|+.+|..+|+.+.++...... ...+++..+ .++.++.|+.+..+|..+|+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~------~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG------KVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT------EEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECC------EEEEEcCCCEEEEEECCCCCE
Confidence 456667777899999999999998877643221 112333332 333467899999999999998
Q ss_pred ccccCCC-C-----CeeeEEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCC-----------------
Q 035621 77 LHNIPVP-E-----PVAPLATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKP----------------- 127 (387)
Q Consensus 77 ~~~~~~~-~-----~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~----------------- 127 (387)
+..+... . .+..--.. .+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 8776643 1 22211111 2345666553 689999999999988776532211
Q ss_pred ---------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEeCCcccccCCCCCCCCccceE
Q 035621 128 ---------------VSCLKISPDGSLLISGGDDG-------------------VIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 128 ---------------v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
...++++|++.+++.+..++ .|..+|. .+++.+-
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~------------~TG~~~W 297 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP------------DTGKYKW 297 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------TTCCEEE
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC------------CCCCEEE
Confidence 13578889888888887664 4778877 3444444
Q ss_pred eeec--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC------------ce------
Q 035621 174 KFVA--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC------------AI------ 225 (387)
Q Consensus 174 ~~~~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~v------ 225 (387)
.++. |. ....-+....++. ...++.++.+|.++++|..+|+.+..+.... .+
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 4332 21 1111122222320 1578999999999999999999988776321 01
Q ss_pred ------------------eEEEeCCCCCeEEEEccC-------------------------------------------C
Q 035621 226 ------------------MGLALDPTETDFFAAGSD-------------------------------------------G 244 (387)
Q Consensus 226 ------------------~~~~~~~~~~~l~~~~~d-------------------------------------------g 244 (387)
..++++|++..+++...+ |
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 146888998888886542 6
Q ss_pred cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
.|..||+.+++.. -.. .+..++....+..++..++.++.||.+++||..+++++..+....
T Consensus 458 ~l~A~D~~tG~~~--------W~~--~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 458 RLLAWDPVAQKAA--------WSV--EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEETTTTEEE--------EEE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEeCCCCcEE--------eec--CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 6888888774322 221 223344455566778888999999999999999999999998654
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=2.7e-12 Score=113.02 Aligned_cols=243 Identities=10% Similarity=0.014 Sum_probs=159.6
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC--cEEEEeCCCCce
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG--NVYAISVPKGDI 117 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~ 117 (387)
....+++++++.+... ...++.|+.||..++............. ++|+++++.|+++..++ .|.+++...+..
T Consensus 132 ~P~~la~d~~g~lyv~----d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAY----QRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEE----ETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEE----ecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 4678899886544332 4567899999998776554444434444 99999999999888765 799999876654
Q ss_pred eEEc----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-----eccCCC--eEEEE
Q 035621 118 LRSF----SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-----VAHNDS--VTAIT 186 (387)
Q Consensus 118 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--i~~~~ 186 (387)
...+ ......+.+++++|++..|+.+..++.|+.||... .. ...+ .++... ...++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~------------~~-~~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT------------QE-VTLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT------------CC-EEEEEECCCCSCCCCSSCCEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC------------CC-EEEEecccccCCCCCCccccEE
Confidence 4333 22456678999999555566677788999999832 11 1111 111111 23899
Q ss_pred EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---------------CceeEEEeCCCCCeEEEEc-cCCcEEEEe
Q 035621 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---------------CAIMGLALDPTETDFFAAG-SDGLIYKGL 250 (387)
Q Consensus 187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~i~d 250 (387)
++|+. +.++++-..++.|+.|+.... ........ .....++++|+|+++++-. .++.|+.|+
T Consensus 274 ~~p~~-g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 274 YYFVD-SNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EeCCC-CEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 99853 477777777899999997643 22222221 3478999999999777777 889999999
Q ss_pred ccccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 251 LKYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
+..+......-....... ....-.....++++++|.++++-..++.|+.+++
T Consensus 352 ~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 755321110000000000 0011246899999999888888888888888775
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=9.6e-14 Score=132.19 Aligned_cols=238 Identities=14% Similarity=0.099 Sum_probs=153.8
Q ss_pred ccccCCCcEEEeeCCC-----CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee-ccccC---------CCCCeE
Q 035621 2 LHHLPCNEVILTSSPE-----GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS-HISPT---------TGSGSV 66 (387)
Q Consensus 2 l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~---------~~d~~v 66 (387)
++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|+ ..... ..-.. .....|
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 4799999999886543 46999999999876531 12222467899997 33222 11000 013358
Q ss_pred EEEEccCCCc--ccccCC---CCCeeeEEeccCCCEEEEecCCC-----cEEEEeCCCC--ceeEEccCCCCCeEEEEEc
Q 035621 67 HLYNLWSSTP--LHNIPV---PEPVAPLATTADGSYLFTGGLSG-----NVYAISVPKG--DILRSFSAHDKPVSCLKIS 134 (387)
Q Consensus 67 ~vw~~~~~~~--~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~ 134 (387)
++|++.++.. ...+.. +..+..+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~ 324 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-D 324 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-E
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-e
Confidence 9999877653 122222 23478999999999988876543 8999999877 41344544555555553 4
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621 135 PDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 135 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 210 (387)
|+++.|+..+.+ +.|.+||+... .......+..+...+..+.+. + +.++++...|+..++|.+
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~----------~~~~~~l~~~~~~~l~~~~~~-~--~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGS----------TPRFDTVVPESKDNLESVGIA-G--NRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSS----------SCEEEEEECCCSSEEEEEEEE-B--TEEEEEEEETTEEEEEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCC----------ccccEEEecCCCCeEEEEEEE-C--CEEEEEEEECCEEEEEEE
Confidence 888888877654 45999988321 011222233344456666665 2 478888888998777755
Q ss_pred C-CCcEEEEEec--CCceeEEEeCCCCCeEEEEc----cCCcEEEEeccccc
Q 035621 211 L-NGTHLSTVTF--PCAIMGLALDPTETDFFAAG----SDGLIYKGLLKYQS 255 (387)
Q Consensus 211 ~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~ 255 (387)
. +++....+.. ...+..+.++|+++.++... ..+.|++||+.++.
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4 4666666663 46788999999988766432 35789999987754
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=4.1e-13 Score=115.04 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=156.9
Q ss_pred ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCC-------CCceeEEEcCccceeeeccccCCCCC
Q 035621 2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSR-------SPRRGLTFAGKPFIAASHISPTTGSG 64 (387)
Q Consensus 2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~d~ 64 (387)
+++||||+++++++ .++.|.+||..+++.+.++.-.. .....++++|++..+.. .....++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV--an~~~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF--YQFSPAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE--EECSSSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE--EEcCCCC
Confidence 57899999887775 35789999999999988875321 24678999997654321 1122478
Q ss_pred eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-CceeEEccCC----CCCeE-EEEEc-CCC
Q 035621 65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVS-CLKIS-PDG 137 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~ 137 (387)
.|.++|+.+++.+..+..++. ...+....+.+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999999999999888876542 222333445666777888888888876 5543222111 12222 24554 577
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee----------ccCCCeEEEEEeeCCCCceEEEEeC------
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV----------AHNDSVTAITCCIGSFNSIIISCSM------ 201 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l~s~~~------ 201 (387)
++++ .+.+|.+++.|+... .......+. ........++++++. +.++....
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~----------~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~--~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSG----------DAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL--DRIYLLVDQRDEWR 305 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTS----------SCEECCCEESSCHHHHHTTEEECSSSCEEEETTT--TEEEEEEEECCTTC
T ss_pred cEEE-EeCCCEEEEEECCCC----------cceeecceeccccccccccccCCCcceeeECCCC--CeEEEEeccccccc
Confidence 6555 556899999998321 001111111 011233346667765 44444322
Q ss_pred ----CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621 202 ----DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ 254 (387)
Q Consensus 202 ----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~ 254 (387)
..+|.++|+.+++.+..+.....+..+++++|++ +|++.. .++.|.++|..+.
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 2579999999999999999888999999999997 666654 4899999999873
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=4.8e-12 Score=109.80 Aligned_cols=232 Identities=9% Similarity=-0.044 Sum_probs=158.0
Q ss_pred ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC-------CCCceeEEEcCccceeeeccccCC--C
Q 035621 2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS-------RSPRRGLTFAGKPFIAASHISPTT--G 62 (387)
Q Consensus 2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~--~ 62 (387)
+++||||++++++. .++.|.+||..+.+.+.++... ......++++|++..+.. +. .
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v----~n~~~ 146 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF----FQFAA 146 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE----EecCC
Confidence 57999999998875 3678999999998888776432 123568899996554332 22 2
Q ss_pred CCeEEEEEccCCCcccc-cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEcc-----CCCCCe-EEEEEc
Q 035621 63 SGSVHLYNLWSSTPLHN-IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFS-----AHDKPV-SCLKIS 134 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~~~~~ 134 (387)
++.|.++| .+++.+.. +..+.. +.+.|++ ..+++.+.||.+.++|. +++...... ....++ ....+.
T Consensus 147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 58899999 99988887 766543 4455654 44556678999999999 877663321 111221 234566
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEEeC---
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISCSM--- 201 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~~--- 201 (387)
+++..++..+..+.+.+.|+... ....+..+.. .......+.+++++ ..++.+..
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~----------~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~--~~lyV~~~~~~ 289 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAA----------GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS--DGIYLLTSEQS 289 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCC----------cceEeeeeeecCCcccccceecCceEeEEECCCC--CEEEEEeccCC
Confidence 66665555557789999988321 0011111110 12233446777775 44444432
Q ss_pred -------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621 202 -------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ 254 (387)
Q Consensus 202 -------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~ 254 (387)
++.|.++|+.+++.+.++........++|+|||+ .++++. .++.|.++|..+.
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 3579999999999999998888899999999999 777776 4899999999874
No 213
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.57 E-value=6.5e-12 Score=109.74 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=172.3
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCC---------CCc-eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSR---------SPR-RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v-~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
++..+++++.++.|..+|.++|+.+..+.... ..+ ..+....+. ++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGH------VYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTE------EEEEETTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCE------EEEEcCCCEEEEEECCCCCE
Confidence 45677888888999999999999877665421 112 222233322 23356789999999999998
Q ss_pred ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe-----EEEEEcCCCCEEEEEeCCCcEEE
Q 035621 77 LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV-----SCLKISPDGSLLISGGDDGVIAT 151 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i 151 (387)
+........+....... +..+++++.++.|..+|..+++.+.......... ..... .+..++.++.++.+..
T Consensus 126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEE
T ss_pred EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEE
Confidence 87766554432221112 4578888889999999999999887765432211 11222 2456888888999999
Q ss_pred EeCCcccccCCCCCCCCccceEeeeccCC-------CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCc
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFVAHND-------SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCA 224 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 224 (387)
+|.. ++..+........ .+..+...|.-.+..++.++.++.+..+|..+++.+.......
T Consensus 203 ~d~~------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~- 269 (376)
T 3q7m_A 203 VLME------------QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS- 269 (376)
T ss_dssp EETT------------TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-
T ss_pred EECC------------CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-
Confidence 9983 3333333221110 0000000111113567778889999999999999887766433
Q ss_pred eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...+.. ++..+++++.++.++.+|..++..... ........+..... .+..|+.++.+|.|..+|..+
T Consensus 270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~--------~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT--------QSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE--------ECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe--------ecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 333333 467888888999999999987543221 11011111222222 246788888999999999999
Q ss_pred ccEEEEeec
Q 035621 305 RQVVMVLKN 313 (387)
Q Consensus 305 ~~~~~~~~~ 313 (387)
++.+.....
T Consensus 338 G~~~~~~~~ 346 (376)
T 3q7m_A 338 GRFVAQQKV 346 (376)
T ss_dssp CCEEEEEEC
T ss_pred CcEEEEEec
Confidence 999988765
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.56 E-value=9.7e-12 Score=117.37 Aligned_cols=248 Identities=12% Similarity=0.068 Sum_probs=161.0
Q ss_pred CCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC---------
Q 035621 36 GSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG--------- 105 (387)
Q Consensus 36 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 105 (387)
+|...+..++|+|++..++-.+- .|+....|++||+.+++.+...........++|+ |++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 35556888999998765553222 3455578999999999865432111124678999 999999887764
Q ss_pred ----cEEEEeCCCCce----eEEccC-CCCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCCCCCCCCccce
Q 035621 106 ----NVYAISVPKGDI----LRSFSA-HDKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 106 ----~i~i~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
.|++|++.++.. +..... |......+.|+||+++|+.... +..|+++|+.. .....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~ 273 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ-----------ENAPL 273 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS-----------TTCCC
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC-----------CCCce
Confidence 399999977642 333333 4456788999999998765432 24789999832 11134
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcE--EEEE-ecCCceeEEEeCCCCCeEEEEccCC--
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTH--LSTV-TFPCAIMGLALDPTETDFFAAGSDG-- 244 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg-- 244 (387)
..+..+....... +++++ +.+++....+ +.|..+|+.++.. ...+ .+...+. .|+++++.|+....++
T Consensus 274 ~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp EEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred EEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 4555565555554 45554 3455555443 6799999988754 2333 3444444 8999999888776643
Q ss_pred -cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCccEE
Q 035621 245 -LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKRQVV 308 (387)
Q Consensus 245 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~ 308 (387)
.|++|++... ....+.....+.+..+.++++++.|+....+ +.|+.||+.+++..
T Consensus 350 ~~l~~~d~~g~---------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 350 ARVEQFDYEGK---------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEECTTSC---------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred eEEEEEECCCC---------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 6788887642 1122222344567788888888866655444 78999999887643
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.56 E-value=3.6e-13 Score=115.60 Aligned_cols=281 Identities=9% Similarity=-0.008 Sum_probs=177.1
Q ss_pred cEEEeeCCCC----cEEEEeCCCCceeEeccCCCCCceeEEEcCccceee--ecc----ccCCCCCeEEEEEccCCCccc
Q 035621 9 EVILTSSPEG----PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA--SHI----SPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 9 ~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~----~~~~~d~~v~vw~~~~~~~~~ 78 (387)
+.+++...++ .|.++|..+++.+.++.....+ .+.++|++.... +.. .-|..++.|.+||..+++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3445544455 7889999999999999766666 799999654332 110 011347899999999999998
Q ss_pred ccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEE--EeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeC
Q 035621 79 NIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYA--ISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGD 145 (387)
Q Consensus 79 ~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 145 (387)
.+..+ .....++++|||++++++.. +..+.+ +|+.+ +..+... +. ..+.|++ ..+++.+.
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence 87643 35779999999999998864 457888 99877 4444321 11 1223444 34556677
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccce----EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEE
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLML----QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTV 219 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 219 (387)
|+.+.+.|+...... ..+.. ..+.....+. . .++. ..++..+. +.+.+.|+.... .+..+
T Consensus 184 dg~~~~vd~~~~~~~-------~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 184 PASLAASDLAAAPAA-------AGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp TTSCEEEECCSSCCC-------CEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred CCCEEEEECcccccc-------CCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence 888888877320000 00000 0111122333 2 4443 44444445 899999986543 22222
Q ss_pred ec-----------CCceeEEEeCCCCCeEEEEcc-C--------CcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 220 TF-----------PCAIMGLALDPTETDFFAAGS-D--------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 220 ~~-----------~~~v~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
.. +.....++++|+++.++++.. . +.+.++|..+.. .+..+.. ......+
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------vv~~i~v--g~~p~gi 319 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------TSGPISN--GHDSDAI 319 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------EEECCEE--EEEECEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------EEEEEEC--CCCcceE
Confidence 21 112223789999999887644 2 356699998733 2222221 2258899
Q ss_pred EEecCCC-EEEEEe-CCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 280 MMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 280 ~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
+|+|||+ .+++.. .++.|.++|+.+++.+.++... ..+.++.+
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~ 364 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSV 364 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEEC
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEe
Confidence 9999998 556666 5999999999999999999754 34555544
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.54 E-value=3.4e-12 Score=107.64 Aligned_cols=223 Identities=9% Similarity=0.097 Sum_probs=148.8
Q ss_pred cccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 3 HHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 3 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.|+|+ +.++++...++.|+.||..+++. ..+. ....+.++++++++.+... .++.|.+||.++++......
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~------~~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT------IGTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE------ETTEEEEEETTTTEEEEEEE
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE------ECCeEEEEECCCCcEEEEEe
Confidence 57885 56777777889999999987765 2332 3466899999997654432 25689999998775433222
Q ss_pred C-----CCCeeeEEeccCCCEEEEecC-----------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEe
Q 035621 82 V-----PEPVAPLATTADGSYLFTGGL-----------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGG 144 (387)
Q Consensus 82 ~-----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 144 (387)
. ...+..++++|+|++.++... .+.|..++. .++... +..+....+.++|+|+++.|+ +.+
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DHHVKK-YFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TSCEEE-EEEEESBEEEEEECTTSCEEEEEEG
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CCCEEE-EeeccccccceEEcCCCCEEEEecC
Confidence 1 234788999999996665422 234444443 233332 323344568999999998665 455
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-C
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-C 223 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~ 223 (387)
.++.|..|++... .... ........+..+......+++.++ +++.++....+.|..||..+++.+..+..+ .
T Consensus 169 ~~~~i~~~~~d~~----~G~~-~~~~~~~~~~~~~~~p~g~~~d~~--G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 169 LSYSVDAFDYDLQ----TGQI-SNRRSVYKLEKEEQIPDGMCIDAE--GKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp GGTEEEEEEECTT----TCCE-EEEEEEEECCGGGCEEEEEEEBTT--SCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred CCCcEEEEeccCC----CCcc-cCcEEEEECCCCCCCCCeeEECCC--CCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 6788999987210 0000 001122223334456778888766 478887777889999999999999988865 6
Q ss_pred ceeEEEeC-CCCCeEEEEcc
Q 035621 224 AIMGLALD-PTETDFFAAGS 242 (387)
Q Consensus 224 ~v~~~~~~-~~~~~l~~~~~ 242 (387)
.+++++|. |+++.|++++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999998 88888777665
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=2.7e-11 Score=102.05 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=145.4
Q ss_pred CceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621 40 PRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL 118 (387)
Q Consensus 40 ~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 118 (387)
-..+..|+++ ..+.. +...++.|..||..+++. ..+.....+.+++++++|+++++ . ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~----~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLF----VDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEE----EETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEE----EECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 3567788873 22222 245678999999987654 44556678999999999995554 3 567999999887654
Q ss_pred EEccC----CCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621 119 RSFSA----HDKPVSCLKISPDGSLLISGGDD---------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185 (387)
Q Consensus 119 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 185 (387)
..... ....++.++++|+|+++++...+ ..-.+|.+.. .. ....+..+....+.+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-----------~g-~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-----------DH-HVKKYFDQVDISNGL 154 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-----------TS-CEEEEEEEESBEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-----------CC-CEEEEeeccccccce
Confidence 33221 12357899999999966654321 2334554411 11 222233344456789
Q ss_pred EEeeCCCCceEEEEeCCCcEEEEeC--CCCcEE--EEE---e-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621 186 TCCIGSFNSIIISCSMDCTCKFWRL--LNGTHL--STV---T-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ 257 (387)
Q Consensus 186 ~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~--~~~---~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 257 (387)
+|+|++ ..++++.+.++.|..||+ .++... +.+ . ....+..++++++|++.++....+.|..||..++.
T Consensus 155 ~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-- 231 (297)
T 3g4e_A 155 DWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-- 231 (297)
T ss_dssp EECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC--
T ss_pred EEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce--
Confidence 999875 234456666889999987 455432 122 1 23567899999999877777777889999987532
Q ss_pred cccccceeEeecccccccEEEEEEe-cCCCEEEEEeC
Q 035621 258 QMHKGQELVTLANRHDGVVVSVMMM-NEGKNLVSAAE 293 (387)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 293 (387)
.+. ....+...+++++|. |+++.|..++.
T Consensus 232 ------~~~-~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 ------RLQ-TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ------EEE-EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ------EEE-EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 222 222345679999998 88876655443
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.52 E-value=4.9e-12 Score=118.45 Aligned_cols=276 Identities=12% Similarity=0.117 Sum_probs=176.3
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCC-C----CCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGS-R----SPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++..+++++.|+.|..+|..+|+.+.++..+ . ..+.+ .....+..+....-.-.+.++.|+.+|..+++.+..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 4567888888999999999999998887654 2 11211 1122222222110000013799999999999887665
Q ss_pred CCCCC---------------------------------eeeEEeccCCCEEEEecCCC-------------------cEE
Q 035621 81 PVPEP---------------------------------VAPLATTADGSYLFTGGLSG-------------------NVY 108 (387)
Q Consensus 81 ~~~~~---------------------------------v~~~~~~~~~~~l~~~~~dg-------------------~i~ 108 (387)
..... ...+++.|++..++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 42111 13578889888998887664 499
Q ss_pred EEeCCCCceeEEccC--CC-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621 109 AISVPKGDILRSFSA--HD-------KPVSCLKISPDG---SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176 (387)
Q Consensus 109 i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 176 (387)
.+|..+|+.+..++. |. ....-+....+| ..++.++.+|.++++|... ++.+..+.
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t------------G~~l~~~~ 354 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN------------GKFISAKN 354 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT------------CCEEEEEE
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC------------CCEecccc
Confidence 999999999877653 21 122223333467 6899999999999999843 22222111
Q ss_pred ccC-----------CC------------------------eEEEEEeeCCCCceEEEEeC--------------------
Q 035621 177 AHN-----------DS------------------------VTAITCCIGSFNSIIISCSM-------------------- 201 (387)
Q Consensus 177 ~~~-----------~~------------------------i~~~~~~~~~~~~~l~s~~~-------------------- 201 (387)
... .+ -..++++|+. .++++...
T Consensus 355 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~ 432 (677)
T 1kb0_A 355 FVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPG 432 (677)
T ss_dssp SSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred ccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccc
Confidence 000 00 0145666654 55555432
Q ss_pred -----------------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621 202 -----------------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ 258 (387)
Q Consensus 202 -----------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 258 (387)
.+.|..||+.+++.+..+.+..++....+..++..+++++.||.+++||..+++
T Consensus 433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~--- 509 (677)
T 1kb0_A 433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE--- 509 (677)
T ss_dssp STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC---
T ss_pred ccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc---
Confidence 278999999999999999877766666777788899999999999999999844
Q ss_pred ccccceeEeecccccccEEEEEEecCCCEEE-EEeC----------------CCcEEEEECCC
Q 035621 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAE----------------DGSVYIWEIEK 304 (387)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----------------dg~i~iwd~~~ 304 (387)
.+..+..++...-.-+.|..+|+.++ +.+. .+.+..|.+..
T Consensus 510 -----~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 510 -----KLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp -----EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred -----eeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 33333223333333455677887444 3222 35777777764
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.52 E-value=4.5e-12 Score=107.34 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=146.5
Q ss_pred cccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 3 HHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++++++.+... ...++.|.+|+.+ ++......
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~----~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHC----EHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEEC
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEE----ECCCCEEEEECCC-CCEEEEEe
Confidence 5889988 6778888899999997 555 3445556667899999996654432 3455789999875 44322211
Q ss_pred -----CCCCeeeEEeccCCCEEEE----ecC-------------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621 82 -----VPEPVAPLATTADGSYLFT----GGL-------------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139 (387)
Q Consensus 82 -----~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (387)
....+..+++.++|++.++ |.. .+.|..+|..+++..... .......++|+|+++.
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQT 201 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCE
Confidence 1134778999999998876 432 256888887677654433 3456788999999998
Q ss_pred EEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 140 LISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 140 l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
|+.+... +.|..|++.... ......+ .........+++.+++ ++. .+..+ .|.+|+. +
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~----------l~~~~~~~~~~~~~pdgi~~d~~G--~lw-v~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGA----------LHDRRHFASVPDGLPDGFCVDRGG--WLW-SSSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTE----------EEEEEEEECCSSSCCCSEEECTTS--CEE-ECCSS-EEEEECT-T
T ss_pred EEEEecCCcCCCCCEEEEEEecCCC----------ccCCeEEEECCCCCCCeEEECCCC--CEE-EecCC-cEEEECC-C
Confidence 8777665 689999873210 0000111 1122334556776664 644 44444 4999997 6
Q ss_pred CcEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621 213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244 (387)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 244 (387)
++.+..+..+..+.+++|.|+++.|++++.++
T Consensus 267 g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 267 GQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 77888888777899999999999888887754
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.51 E-value=1.4e-12 Score=112.43 Aligned_cols=260 Identities=11% Similarity=0.073 Sum_probs=163.6
Q ss_pred ccccCCCcEEEeeC--CCCcEEEEeCCCCceeEec-------cCCCCCceeEEEcCccceeeeccccCC----CCCeEEE
Q 035621 2 LHHLPCNEVILTSS--PEGPITAYNPSSGAILAHF-------SGSRSPRRGLTFAGKPFIAASHISPTT----GSGSVHL 68 (387)
Q Consensus 2 l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~----~d~~v~v 68 (387)
++++|+|+++++.. .++.++||.+.+++.. .+ ..|...+..+++++++.+...- .+ .++.|.+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D---~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD---NGNQSKSVPKLVA 97 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE---CHHHHTSCCEEEE
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc---CCCCcCCCCeEEE
Confidence 56889999988853 2343555655455533 22 2244568999999865433210 11 1578999
Q ss_pred EEccCCCcccccCCC-------CCeeeEEeccCCCEEE-Eec---CCCcEEEEeCCCCceeEEccCCCCCeE-EEEEcCC
Q 035621 69 YNLWSSTPLHNIPVP-------EPVAPLATTADGSYLF-TGG---LSGNVYAISVPKGDILRSFSAHDKPVS-CLKISPD 136 (387)
Q Consensus 69 w~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~ 136 (387)
||+.+++.+..+..+ ..+..+++++++..++ +.. .++.|.+||+.+++..+.+..|..... ...+.++
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~ 177 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID 177 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeEC
Confidence 999988866555432 3468899998655554 443 578899999998887777755432110 1334456
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCC---C
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLL---N 212 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~---~ 212 (387)
+..+.+.+.++.++.|.. .+..++++|++ +.|+.+..++ .+..++.. .
T Consensus 178 g~~~~~~~~~g~~~~~~~--------------------------~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 178 GVPVQIGQPDGTVIRPHL--------------------------GVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp TEECBEECTTSCEECCCC--------------------------CEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTC
T ss_pred CEEEEeccCCCceeceec--------------------------ccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcC
Confidence 766767777777655522 35678998874 7777776655 45555432 1
Q ss_pred Cc--------EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621 213 GT--------HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284 (387)
Q Consensus 213 ~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 284 (387)
+. .+...........++++++|.++++...++.|.+||...+.. ..+.. ..+...+.+++|.++
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~------~~~~~--~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY------KLLVT--DEKLSWTDSFNFGSD 301 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE------EEEEE--CGGGSCEEEEEECTT
T ss_pred CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE------EEEEE--CCceecCCeeEECCC
Confidence 11 012222334567899999999888888899999999843211 11111 123456899999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 035621 285 GKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 285 ~~~l~s~~~dg~i~iwd 301 (387)
+.++++.+..+.+.+|.
T Consensus 302 g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEEEECCGGGSGGGB
T ss_pred CcEEEEeCccccccccc
Confidence 98888876555444443
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=9.6e-12 Score=108.57 Aligned_cols=244 Identities=9% Similarity=0.018 Sum_probs=159.7
Q ss_pred ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC-------CCCceeEEEcCccceeeeccccCCCCC
Q 035621 2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS-------RSPRRGLTFAGKPFIAASHISPTTGSG 64 (387)
Q Consensus 2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~d~ 64 (387)
+.+||||++|+++. .++.|.++|..+++.+.++.-. ......+.++|++..+.. .....++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV--~n~~~~~ 200 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLF--YQFSPAP 200 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE--EECSSSC
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEE--EecCCCC
Confidence 57899999888876 3678999999999998877521 234678999996643321 0012368
Q ss_pred eEEEEEccCCCcccccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCe-EEEEEcCCCC
Q 035621 65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPV-SCLKISPDGS 138 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~ 138 (387)
.|.+.|+.+++.+..+..+.. ....|++ ..+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++.
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 999999999998888776542 2334433 4555666788888888765554422 22112221 2356889988
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCC--C-CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---------CCCcEE
Q 035621 139 LLISGGDDGVIATVPIFQLVDEHTDD--K-NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---------MDCTCK 206 (387)
Q Consensus 139 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---------~d~~i~ 206 (387)
.++..+..+.+.+.|+.......... . ........ + .......+++++++ ++++++.. .++.|.
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g-~--~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD-W--RPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT-E--EECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEE
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc-c--ccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEE
Confidence 87777888999999983210000000 0 00000000 0 11112235778875 23344332 135799
Q ss_pred EEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621 207 FWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ 254 (387)
Q Consensus 207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~ 254 (387)
++|+.+.+.+.++........++|+||++ ++++.. .++.|.++|..+.
T Consensus 354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 99999999999999877899999999999 888887 4999999999884
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.2e-12 Score=112.76 Aligned_cols=171 Identities=12% Similarity=0.124 Sum_probs=130.7
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----------cccccCCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----------PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVY 108 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 108 (387)
+++.+++++...+.+. ++.+ .+.+|++++.+ ......++. |+.++| ++++|+++ .++.|+
T Consensus 39 ~~nlLais~~~gll~a----~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVA----ASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEE----EETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cccEEEEcCCCCEEEE----eCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 5889999985544432 5555 56669875432 223344667 999999 99999999 889999
Q ss_pred EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
+||+.+.........|..++.++.+.+.. +++++.||.|.+||+. ..... .+...|++++|+
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~------------~~~~~----~~~~~Vs~v~WS 171 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR------------TKSTK----QLAQNVTSFDVT 171 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT------------TCCEE----EEEESEEEEEEC
T ss_pred EEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc------------CCccc----cccCCceEEEEc
Confidence 99998877666677788889988887653 8889999999999993 22222 145689999999
Q ss_pred eCCCCceEEEEeCCCcEEEEeCCCCcE--EEEE------e----cCCceeEEEeCCCCCeEEEEc
Q 035621 189 IGSFNSIIISCSMDCTCKFWRLLNGTH--LSTV------T----FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~l~~~~ 241 (387)
|.+ ++.|..||++++|+...++. ..++ . +...|.++.|.+++.++++-.
T Consensus 172 pkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 172 NSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 984 67889999999999887775 5566 2 457799999999999888743
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=4.9e-11 Score=101.88 Aligned_cols=221 Identities=11% Similarity=0.086 Sum_probs=143.7
Q ss_pred cccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 3 HHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 3 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
.|+|+ +.++++...++.|..||..+++.. .+. ....+.++++++++.+... + +..|.+||..+++......
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-----~-~~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-----S-DDGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-----E-TTEEEEEETTTCCEEEEEC
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-----E-CCCEEEEECCCCcEEEEee
Confidence 58887 556777777889999999877643 333 3456899999987654432 2 3449999988776533222
Q ss_pred C-----CCCeeeEEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcE
Q 035621 82 V-----PEPVAPLATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVI 149 (387)
Q Consensus 82 ~-----~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 149 (387)
. ...+..++++|+|++.++... .+.|..++ +++... +..+......++|+|+++.++.+ +.++.|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 1 135889999999987665432 24566666 454332 32233457899999999876554 457889
Q ss_pred EEEeCC--cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-Ccee
Q 035621 150 ATVPIF--QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CAIM 226 (387)
Q Consensus 150 ~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~ 226 (387)
.+||+. ..... ........+.........+++.++ +++.++...++.|..||. +++.+..+..+ ..+.
T Consensus 204 ~~~d~~~~~Gl~~------~~~~~~~~~~~~~~~p~gi~~d~~--G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 204 MRVPLDARTGLPT------GKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp EEEEBCTTTCCBS------SCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred EEEEcccccCCcc------cCceEEEECCCCCCCCCeeEECCC--CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence 999973 10000 001112222223345567777665 477777666788999998 67777777754 4699
Q ss_pred EEEeC-CCCCeEEEEccC
Q 035621 227 GLALD-PTETDFFAAGSD 243 (387)
Q Consensus 227 ~~~~~-~~~~~l~~~~~d 243 (387)
+++|. |+++.|++++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888877766543
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.46 E-value=2.7e-11 Score=113.64 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=164.1
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCC--CCCceeEEEcC----ccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGS--RSPRRGLTFAG----KPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~----~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
++..+++++.|+.|+.+|..+|+.+..+... ......+...| +..+....-.-.+.++.|..||..+|+.+..+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 4567888889999999999999998777542 11111111122 22211110000014789999999999987655
Q ss_pred CC-C-C------------------------------CeeeEEeccCCCEEEEecCCCc-------------------EEE
Q 035621 81 PV-P-E------------------------------PVAPLATTADGSYLFTGGLSGN-------------------VYA 109 (387)
Q Consensus 81 ~~-~-~------------------------------~v~~~~~~~~~~~l~~~~~dg~-------------------i~i 109 (387)
.. + . ....+++.|++..++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 41 0 0 0125788898889999887763 999
Q ss_pred EeCCCCceeEEccC--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCcccccCCCCCCC----------
Q 035621 110 ISVPKGDILRSFSA--HD-------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDEHTDDKNP---------- 167 (387)
Q Consensus 110 ~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 167 (387)
+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..............
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999887753 21 1222222223554 78899999999999984321110000000
Q ss_pred Cccc---------------eEeeeccCC--CeEEEEEeeCCCCceEEEEeC-----------------------------
Q 035621 168 DDLM---------------LQKFVAHND--SVTAITCCIGSFNSIIISCSM----------------------------- 201 (387)
Q Consensus 168 ~~~~---------------~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~----------------------------- 201 (387)
...+ .....+..+ .-..++++|.. .++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0000 000000000 01125566653 44444321
Q ss_pred ----------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621 202 ----------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL 265 (387)
Q Consensus 202 ----------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 265 (387)
+|.|+.||+.+++.+..+....+.....+...+..++.++.||.++.||.++++ .+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~--------~l 509 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE--------KL 509 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC--------EE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc--------cc
Confidence 378999999999999998876666555677788899999999999999999844 33
Q ss_pred EeecccccccEEEEEEecCCCEEE
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
-.+..++.....-+.|..+|+.++
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeeeCCCCcccCceEEEECCEEEE
Confidence 333222222223466678887443
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.45 E-value=1.3e-10 Score=98.26 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=146.3
Q ss_pred CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
.........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~----- 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD----- 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-----
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-----
Confidence 334567889999998 5667777889999997 454 34455566778999999999977666666889999862
Q ss_pred CCCCCCCCccceEeeec-----cCCCeEEEEEeeCCCCceEEE----EeC-------------CCcEEEEeCCCCcEEEE
Q 035621 161 HTDDKNPDDLMLQKFVA-----HNDSVTAITCCIGSFNSIIIS----CSM-------------DCTCKFWRLLNGTHLST 218 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~ 218 (387)
+. ...+.. ....+..+++.+++ +++++ |.. .+.|..||..+++....
T Consensus 116 --------g~-~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 --------GQ-AHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp --------SC-EEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred --------CC-EEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 11 111111 11345678887764 77776 332 25678888766665443
Q ss_pred EecCCceeEEEeCCCCCeEEEEccC------CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 219 VTFPCAIMGLALDPTETDFFAAGSD------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
. .......++|+|+++.|+++... +.|++|++...... .... +.......+..++++++|++.++ +
T Consensus 185 ~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~----~~~~--~~~~~~~~pdgi~~d~~G~lwv~-~ 256 (305)
T 3dr2_A 185 A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH----DRRH--FASVPDGLPDGFCVDRGGWLWSS-S 256 (305)
T ss_dssp E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE----EEEE--EECCSSSCCCSEEECTTSCEEEC-C
T ss_pred e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc----CCeE--EEECCCCCCCeEEECCCCCEEEe-c
Confidence 3 34567889999999988887665 78999998753200 0111 11112344567899999995544 4
Q ss_pred CCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCceeeEEE
Q 035621 293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVV 337 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 337 (387)
.+ .|.+|+. +++.+..+..+. .+++++|. ++...+|+.
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~---~d~~~L~it 294 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIPTPG--TASNCTFD---QAQQRLFIT 294 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEECSS--CCCEEEEC---TTSCEEEEE
T ss_pred CC-cEEEECC-CCCEEEEEECCC--ceeEEEEe---CCCCEEEEE
Confidence 45 4999998 577777776543 57888887 344445543
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=1.5e-10 Score=101.12 Aligned_cols=256 Identities=14% Similarity=0.123 Sum_probs=161.3
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV 86 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v 86 (387)
++..++.++.++.|..+|..+|+.+.................+ .++.++.++.+..+|..+++.+.......++
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~------~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG------LVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETT------EEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECC------EEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 3456777888899999999999988776544332222233332 2333567899999999999888777654433
Q ss_pred ------eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-------eEEEEEcC--CCCEEEEEeCCCcEEE
Q 035621 87 ------APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP-------VSCLKISP--DGSLLISGGDDGVIAT 151 (387)
Q Consensus 87 ------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~~~~~dg~i~i 151 (387)
...... +..++++..++.+..+|..+++.+......... +..+...| .+..++.++.++.+..
T Consensus 176 ~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 176 LSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp ---CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred eeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 222222 457888888999999999999987766432110 00011111 3457888888999999
Q ss_pred EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC-CceeEEE
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP-CAIMGLA 229 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~v~~~~ 229 (387)
+|. .++..+.... ......+... +..++.++.++.|..+|..+++.+.... .. .......
T Consensus 254 ~d~------------~tG~~~w~~~--~~~~~~~~~~----~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 254 LDL------------RSGQIMWKRE--LGSVNDFIVD----GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp EET------------TTCCEEEEEC--CCCEEEEEEE----TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred EEC------------CCCcEEeecc--CCCCCCceEE----CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 998 3344333322 2233334332 3577788889999999999999887775 22 2222222
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEEEEeCCCcEEEEE
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
. .+..+++++.+|.++.+|..++.... ... .....+.. ... .+..|+.++.+|.|+.|+
T Consensus 316 ~--~~~~l~v~~~~g~l~~~d~~tG~~~~--------~~~-~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 316 L--YNGNLVVGDSEGYLHWINVEDGRFVA--------QQK-VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEECTTSEEEEEETTTCCEEE--------EEE-CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred E--ECCEEEEEeCCCeEEEEECCCCcEEE--------EEe-cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2 35789999999999999998854321 111 11111211 122 245778888999999987
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.43 E-value=5.1e-11 Score=101.98 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=166.1
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCC-ee
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEP-VA 87 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~-v~ 87 (387)
..|..++.++.|..|| .+++....+..+...+.++...+++.+.. ++.+ +..+|. +++....+..... ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-----~t~~--l~~~d~-~g~~~~~~~~~~~~~~ 101 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-----GSDK--VYAINP-DGTEKWRFDTKKAIVS 101 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-----SSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-----ecCc--EEEECC-CCcEEEEEECCCCccc
Confidence 3567777888999999 88988776654444456677765443322 3444 888885 6666666654433 23
Q ss_pred eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
...+. +..+.+++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|. .
T Consensus 102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~------------~ 165 (330)
T 3hxj_A 102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINP------------D 165 (330)
T ss_dssp CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECT------------T
T ss_pred CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECC------------C
Confidence 33333 4567788888999999988 777766665555667777777776 666778899999987 3
Q ss_pred CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeEEEEccCCcE
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGSDGLI 246 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 246 (387)
......+......+.++...++ +. +..++ +.|..+| .+++.+..+.. ...+.++...++| .+.+++.++.+
T Consensus 166 -g~~~~~~~~~~~~~~~~~~d~~--g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl 237 (330)
T 3hxj_A 166 -GTEKWRFKTNDAITSAASIGKD--GT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHL 237 (330)
T ss_dssp -SCEEEEEECSSCCCSCCEECTT--CC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEE
T ss_pred -CCEeEEEecCCCceeeeEEcCC--CE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeE
Confidence 3344444444445555655444 34 44444 7899999 77777766663 3567788888876 45666677888
Q ss_pred EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
..++.... ...... .....+..+.+.+++ .|..++.+|.|..+|. +++.+..+..
T Consensus 238 ~~~~~~g~---------~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 238 YAINPDGT---------EKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET 292 (330)
T ss_dssp EEECTTSC---------EEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC
T ss_pred EEECCCCC---------EeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc
Confidence 88874321 111111 112223344555555 5666778888999996 6777776653
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=2.9e-10 Score=97.11 Aligned_cols=221 Identities=13% Similarity=0.039 Sum_probs=139.7
Q ss_pred ceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621 41 RRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR 119 (387)
Q Consensus 41 v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 119 (387)
..+..|+|+ ..+.. +...++.|..||..+++. ..+..+..+.+++++++|+++++. .+ .|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~----~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWW----FNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEE----EEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEE----EECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 456788874 22222 244578999999877653 334456789999999999877764 44 49999998887543
Q ss_pred EccC----CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621 120 SFSA----HDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS 191 (387)
Q Consensus 120 ~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (387)
.... ....+.+++++|+|+++++...+ +...+|.+.. .....+..+......++|+|++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-------------g~~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-------------GKVTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-------------TEEEEEEEEESSEEEEEECTTS
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-------------CcEEEeeCCCcccCCeEEcCCC
Confidence 3221 12358899999999976654321 2334444411 1122222233456788998875
Q ss_pred CCceE-EEEeCCCcEEEEeCC--CC-cE-----EEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621 192 FNSII-ISCSMDCTCKFWRLL--NG-TH-----LSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261 (387)
Q Consensus 192 ~~~~l-~s~~~d~~i~iwd~~--~~-~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 261 (387)
+.+ ++.+.++.|.+||+. ++ .. +..+. ....+..++++++|.++++...++.|.+|+...
T Consensus 191 --~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g-------- 260 (326)
T 2ghs_A 191 --TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-------- 260 (326)
T ss_dssp --CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC--------
T ss_pred --CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC--------
Confidence 544 455567899999986 55 31 22222 235578899999998777766678899998732
Q ss_pred cceeEeecccccccEEEEEEe-cCCCEEEEEeC
Q 035621 262 GQELVTLANRHDGVVVSVMMM-NEGKNLVSAAE 293 (387)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 293 (387)
..... ...+...+++++|+ ++++.|+.++.
T Consensus 261 -~~~~~-i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 -NHIAR-YEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp -CEEEE-EECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred -CEEEE-EECCCCCcEEEEEecCCCCEEEEEec
Confidence 11111 12345579999998 88876655443
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.42 E-value=9.3e-13 Score=114.43 Aligned_cols=258 Identities=13% Similarity=0.048 Sum_probs=138.6
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE-- 84 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~-- 84 (387)
++.++++++.||.|+.||..+|+.+.++.. +++.+..+..+.. .+++++.|+.|+.||..+++.+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~----~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP----AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C----CEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC----EEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 577899999999999999999999988875 4455444444321 23336789999999999998776655331
Q ss_pred Ceee-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 85 PVAP-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 85 ~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
.+.+ ..+. ++..+++++.++.++.||.++|+.+..+..+. ...++|++..+++++.|+.|+.||..
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~-------- 148 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK-------- 148 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS--------
T ss_pred ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC--------
Confidence 1111 1111 34567888889999999999999888776543 23556788899999999999999983
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeE-EEeCCCCCeE----
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG-LALDPTETDF---- 237 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l---- 237 (387)
++..+..+..+. .....+..+. .+..++.++.||.++.||..+++.+..+....++.. ..+++++...
T Consensus 149 ----tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~ 222 (369)
T 2hz6_A 149 ----TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHI 222 (369)
T ss_dssp ----SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCE
T ss_pred ----CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccce
Confidence 333333322111 1111222210 014677788999999999999999988887666544 3445555321
Q ss_pred EEEccCCcEEEEeccccc----cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 238 FAAGSDGLIYKGLLKYQS----RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
+.+ ++.++.+|..++. ....... ...+.+. .-.+..|+.++.||.++.++..
T Consensus 223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~~----------~~~~~sp--~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 223 NVA--VETLRYLTFMSGEVGRITKWKYPF----------PKETEAK--SKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEE--HHHHHHHHHHHHHHHHHHTSCCCC----------CCHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred eec--ccceeeeehhcCCcccceeeeecc----------Ccccccc--ccccceEEEecccCCEEecCcc
Confidence 112 3345556654433 1111100 0111000 0123567778888999888876
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=3e-11 Score=114.00 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=146.3
Q ss_pred ccccCCCcEEEe-----eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cccc-------CCCCCeEE
Q 035621 2 LHHLPCNEVILT-----SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HISP-------TTGSGSVH 67 (387)
Q Consensus 2 l~~s~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~-------~~~d~~v~ 67 (387)
++|||||++||. |+....|++||+.+++.+.... +......++|+ ++..+.. .--. ......|+
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence 379999999984 4444679999999998654311 11113567788 5432221 1000 02234699
Q ss_pred EEEccCCCc--ccccCC----CCCeeeEEeccCCCEEEEec----CCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCC
Q 035621 68 LYNLWSSTP--LHNIPV----PEPVAPLATTADGSYLFTGG----LSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 68 vw~~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~ 136 (387)
+|++.++.. ...+.. +.....+.|+|||++|+... ....|+++|+.++. ....+..+....... ++++
T Consensus 212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~ 290 (693)
T 3iuj_A 212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNK 290 (693)
T ss_dssp EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEE
T ss_pred EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eecc
Confidence 999877643 222222 23467889999999886543 23589999997763 344555555555554 5666
Q ss_pred CCEEE-EEeCC---CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEe
Q 035621 137 GSLLI-SGGDD---GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWR 209 (387)
Q Consensus 137 ~~~l~-~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd 209 (387)
+..|+ ....+ +.|..+|+... .......+..|...+. .|++++ +.|+... .++ .|++||
T Consensus 291 g~~l~~~t~~~~~~~~l~~~d~~~~----------~~~~~~~l~~~~~~~~--~~s~~g--~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 291 GSTLYLLTNRDAPNRRLVTVDAANP----------GPAHWRDLIPERQQVL--TVHSGS--GYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSC----------CGGGCEEEECCCSSCE--EEEEET--TEEEEEEEETTEEEEEEEC
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCC----------CccccEEEecCCCCEE--EEEEEC--CEEEEEEEECCeeEEEEEE
Confidence 66554 44433 57888888321 1112345556666554 778875 5555444 454 688999
Q ss_pred CCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC----CcEEEEeccccc
Q 035621 210 LLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD----GLIYKGLLKYQS 255 (387)
Q Consensus 210 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 255 (387)
+..+ ....+.. ...+..+.++++++.++....+ +.++.||+..+.
T Consensus 357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 8744 4555553 3467778888898887776554 789999987643
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=6.8e-11 Score=101.79 Aligned_cols=227 Identities=10% Similarity=0.090 Sum_probs=143.7
Q ss_pred CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEcc-------CCCCCeEEEEEcCCCCEEEEEeC-----CCcE
Q 035621 84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFS-------AHDKPVSCLKISPDGSLLISGGD-----DGVI 149 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 149 (387)
..+..++++++|+.+++.. .++.+++|.+.+++. ..+. .+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5688999999999888853 234244444435543 3221 34567999999999876665433 5789
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEe---CCCcEEEEeCCCCcEEEEEe
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCS---MDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~ 220 (387)
.+||+ .+...+..+.. +......+++.++. +..+++.. .++.|.+||+.+++..+.+.
T Consensus 96 ~~~d~------------~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 96 VAWDT------------LNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EEEET------------TTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EEEEC------------CCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 99998 33333333332 22356788988753 35556655 67899999998887655442
Q ss_pred c------------------------------CCceeEEEeCCCCCeEEEEccCC-cEEEEecccccccccccc---ceeE
Q 035621 221 F------------------------------PCAIMGLALDPTETDFFAAGSDG-LIYKGLLKYQSRQQMHKG---QELV 266 (387)
Q Consensus 221 ~------------------------------~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~---~~~~ 266 (387)
. ...+..++|+|+++.|+++...+ .++.++............ ..+.
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 1 02358899999999888887665 555554321100000000 0000
Q ss_pred eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
. .++......++++++|.++++...++.|.+||..+++............+++++|.+
T Consensus 243 ~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 243 R--YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS 300 (343)
T ss_dssp E--EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT
T ss_pred e--cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC
Confidence 0 123445678999999999999888999999998667654444333234678888874
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=1.2e-10 Score=104.20 Aligned_cols=313 Identities=10% Similarity=0.053 Sum_probs=187.9
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCC---------------------------------C------CCceeEEEcC-c
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGS---------------------------------R------SPRRGLTFAG-K 49 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------~------~~v~~~~~~~-~ 49 (387)
.|.+|+..|.++|+-+.+++.+..+.-. . +.......+. +
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 3778999999999999888766544210 0 1111223332 2
Q ss_pred cceeeecc-ccCCCCCeEEEEEccCCCccc--ccCCCCCeeeEEe-c-cCCCEEEEec------------------CCCc
Q 035621 50 PFIAASHI-SPTTGSGSVHLYNLWSSTPLH--NIPVPEPVAPLAT-T-ADGSYLFTGG------------------LSGN 106 (387)
Q Consensus 50 ~~~~~~~~-~~~~~d~~v~vw~~~~~~~~~--~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~ 106 (387)
+.....++ ++...++.|.+.|+.+.+... .+.....+..+++ + |+++++++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 22222222 234567789999999998777 4444567888888 5 9999999884 3457
Q ss_pred EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCcccccCCCCC------
Q 035621 107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG---------------VIATVPIFQLVDEHTDDK------ 165 (387)
Q Consensus 107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~------ 165 (387)
+.++|..+.+...++.--. ....++++|+|+++++.+.+. .|.+.|............
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999998888776322 457788999999999988663 244444322110000000
Q ss_pred -----CCC--ccc-eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------------EEEEEecCCce
Q 035621 166 -----NPD--DLM-LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------------HLSTVTFPCAI 225 (387)
Q Consensus 166 -----~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~v 225 (387)
... ... +..+.. .....++.++|++ ...++++..+.+|.++|+.+.+ ....+......
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDG-k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDK-KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTS-SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCC-CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 011 112 222322 2234567888886 2345555568899999998653 45556667889
Q ss_pred eEEEeCCCCCeEEE-EccCCcEEEEecccccccc-ccccceeEeecccccc-----cEEEEEEecCCCEEEEEeC---CC
Q 035621 226 MGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDG-----VVVSVMMMNEGKNLVSAAE---DG 295 (387)
Q Consensus 226 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~---dg 295 (387)
..++|+|+| ++++ ..-|+.|.+|++....... -.+..........|.. .-..+.++|||++|++... |+
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 999999999 5555 4559999999987632110 0000112222222322 2223356899999998743 44
Q ss_pred cE----------EEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 296 SV----------YIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 296 ~i----------~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
.+ .++|+..+++...........+....+.+
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~ 453 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVH 453 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEEC
T ss_pred cccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEcc
Confidence 32 88999766644333332234455554444
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=1.3e-09 Score=102.01 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=175.0
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP 76 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~ 76 (387)
+..+++++.++.|+.+|..+|+.+.++....... ..+++.. ..++.++.|+.|..+|..+|+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG------DKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB------TEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC------CEEEEEcCCCEEEEEECCCCCE
Confidence 4566677778999999999999988775433211 1122222 2334467899999999999998
Q ss_pred ccccCCCCC--eeeEEecc--CCCEEEEecC------CCcEEEEeCCCCceeEEccCCC---------------------
Q 035621 77 LHNIPVPEP--VAPLATTA--DGSYLFTGGL------SGNVYAISVPKGDILRSFSAHD--------------------- 125 (387)
Q Consensus 77 ~~~~~~~~~--v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--------------------- 125 (387)
+..+..... ...+.-+| .+..++++.. +|.|..+|.++|+.+..+....
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 876654211 11111111 2345665543 5889999999999987764210
Q ss_pred ----------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCcccccCCCCCCCCccceEeee
Q 035621 126 ----------KPVSCLKISPDGSLLISGGDDGV-------------------IATVPIFQLVDEHTDDKNPDDLMLQKFV 176 (387)
Q Consensus 126 ----------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 176 (387)
.....++++|+..+++.++.++. |..+|. .+++.+-.++
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~------------~tG~~~W~~~ 287 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP------------DTGKLAWHYQ 287 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------TTCCEEEEEE
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC------------CCCceeeEee
Confidence 01124688888888888887663 788887 4444544443
Q ss_pred c--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------c---------
Q 035621 177 A--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------A--------- 224 (387)
Q Consensus 177 ~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~--------- 224 (387)
. |. .+.....+..++. ...++.++.+|.++++|..+|+.+..++... +
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 2 21 2222222233331 1268899999999999999999885554211 0
Q ss_pred ---------------eeEEEeCCCCCeEEEEc------------------------------------cCCcEEEEeccc
Q 035621 225 ---------------IMGLALDPTETDFFAAG------------------------------------SDGLIYKGLLKY 253 (387)
Q Consensus 225 ---------------v~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~ 253 (387)
-..++++|+...+++.. .+|.|+.||..+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 01256777766666532 136677788776
Q ss_pred cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
++... .. .+..+.....+...+.+++.++.||.|+.||.++++.+..++..
T Consensus 448 G~~~W--------~~--~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 448 QKAAW--------KV--PYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEE--------EE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcEEE--------Ec--cCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 43221 11 11122233344456788899999999999999999999998765
No 234
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.36 E-value=7.9e-10 Score=101.34 Aligned_cols=276 Identities=14% Similarity=0.107 Sum_probs=168.1
Q ss_pred CcEEEeeCC-CCcEEEEeC-CCCceeEeccCCCCC-c----------eeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621 8 NEVILTSSP-EGPITAYNP-SSGAILAHFSGSRSP-R----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS 74 (387)
Q Consensus 8 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~ 74 (387)
+..++.++. ++.|.-+|. .+|+.+.++...... + ..+++..+ .++.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAG------QIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETT------EEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECC------EEEEEeCCCEEEEEECCCC
Confidence 445566666 899999999 899998776533211 1 12233332 2333567999999999999
Q ss_pred CcccccCCCC-----Ceee-EEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCC---------------
Q 035621 75 TPLHNIPVPE-----PVAP-LATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKP--------------- 127 (387)
Q Consensus 75 ~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------- 127 (387)
+.+....... .+.+ ... .+..+++++. ++.|..+|.++|+.+.++......
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 9887665432 2221 111 2345666654 789999999999988766432110
Q ss_pred -----------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEeCCcccccCCCCCCCC
Q 035621 128 -----------------------VSCLKISPDGSLLISGGDD----------------GVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 128 -----------------------v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~ 168 (387)
...+++.++...++.+..+ +.|..+|. .+
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~------------~t 281 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL------------DT 281 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET------------TT
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec------------CC
Confidence 0235666766667666532 24778877 34
Q ss_pred ccceEeeec--c--------CCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcEEEEEecCC--------------
Q 035621 169 DLMLQKFVA--H--------NDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------- 223 (387)
Q Consensus 169 ~~~~~~~~~--~--------~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------- 223 (387)
++.+-.++. | ..++. +....++.. ..++.++.+|.+.++|..+++.+..+....
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~ 360 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGT 360 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCS
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCc
Confidence 444444332 1 12221 111123200 357788889999999999999988776322
Q ss_pred ce--------------------------eEEEeCCCCCeEEEEcc-----------------------------------
Q 035621 224 AI--------------------------MGLALDPTETDFFAAGS----------------------------------- 242 (387)
Q Consensus 224 ~v--------------------------~~~~~~~~~~~l~~~~~----------------------------------- 242 (387)
++ ..++++|+...+++...
T Consensus 361 p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 440 (571)
T 2ad6_A 361 PVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTK 440 (571)
T ss_dssp EEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTS
T ss_pred eecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCC
Confidence 11 23577888777777643
Q ss_pred --CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621 243 --DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 243 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (387)
+|.++.||..+++.. -.. .+...+....+...+..++.++.||.|+.||.++|+++.+++..
T Consensus 441 ~~~g~l~a~D~~tG~~~--------W~~--~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 441 KEMGQIRAFDLTTGKAK--------WTK--WEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCCEEEEEECTTTCCEE--------EEE--EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCeEEEEECCCCCEE--------EEe--cCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 356777777664322 111 11112222222334667777999999999999999999998754
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=117.38 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621 94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ 173 (387)
Q Consensus 94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 173 (387)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||.. +++.+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~------------tG~~~w 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK------------NNEGLT 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----------------CCSE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC------------CCceee
Confidence 567899999999999999999999988875 455555566677788888999999999983 233322
Q ss_pred eeeccCC-CeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 174 KFVAHND-SVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 174 ~~~~~~~-~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
.+..+.. .+. .+|.. .+..+++++.|+.++.||..+|+.+..+..... ..++|++..+++++.++.|+.||.
T Consensus 74 ~~~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 74 KLPFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp ECSCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCS
T ss_pred eeeccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEEC
Confidence 2221110 000 01110 135677888899999999999999887765432 345678899999999999999999
Q ss_pred cccccccccccceeEeecccccccEEEEEEecCC---CEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.++........ .. ....++.++. ..+++++.||.|+.||..+|+.+.++.
T Consensus 148 ~tG~~~W~~~~-------~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 148 KTRELRWNATY-------FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SSSSCCCEEEE-------EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEeEec-------cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 88543221110 00 1122233322 457778899999999999999988876
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=2.8e-09 Score=92.16 Aligned_cols=218 Identities=8% Similarity=0.035 Sum_probs=140.9
Q ss_pred cccCCCCCeEEEEEccCC----CcccccC--------CCCCeeeEEeccCCCEEEEecCC------CcEEEEeCCCCcee
Q 035621 57 ISPTTGSGSVHLYNLWSS----TPLHNIP--------VPEPVAPLATTADGSYLFTGGLS------GNVYAISVPKGDIL 118 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 118 (387)
++++..++.|.++|+.+. +....++ .......+.++|+| .++++..+ |.|.++|.++.+.+
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 344778899999998654 3344442 11245667889999 66665544 68999999999999
Q ss_pred EEccCCCC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621 119 RSFSAHDK---PVSCLKISPDGSLLISGG-------------------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176 (387)
Q Consensus 119 ~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 176 (387)
.++..... --..+.|+|+++.+++.. .+..|.+||+ ...+.+.++.
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~------------~~~k~~~tI~ 245 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL------------RKRKRIHSLT 245 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET------------TTTEEEEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC------------CCCcEeeEEe
Confidence 98863222 234588899999888885 3689999999 3444455554
Q ss_pred cc-C-CCeEEEEEeeCCCCceEEEEe------CCCcEEEEeCCCCcE--EEEEe--c-----------------CCceeE
Q 035621 177 AH-N-DSVTAITCCIGSFNSIIISCS------MDCTCKFWRLLNGTH--LSTVT--F-----------------PCAIMG 227 (387)
Q Consensus 177 ~~-~-~~i~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~--~-----------------~~~v~~ 227 (387)
.. . .....+.|..++++++++.+. .+++|.+|....++. ...+. . ...+..
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 42 1 233456663333346655555 567888776655431 12211 0 245788
Q ss_pred EEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeeccc-------c------cccEEEEEEecCCCEEEEEe
Q 035621 228 LALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANR-------H------DGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~------~~~v~~~~~s~~~~~l~s~~ 292 (387)
+.++|||++|+++.. .+.|.+||+..... .........+ | .+....++++|||++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-----~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFK-----PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTS-----CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCC-----cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999999877 78999999864211 1111111111 0 11367899999999999887
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.32 E-value=1.2e-09 Score=97.75 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=140.2
Q ss_pred CCCEEEEecC-CCcEEEEeCCCCceeEEccC-CCCCeEEEEE-c-CCCCEEEEEeC------------------CCcEEE
Q 035621 94 DGSYLFTGGL-SGNVYAISVPKGDILRSFSA-HDKPVSCLKI-S-PDGSLLISGGD------------------DGVIAT 151 (387)
Q Consensus 94 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~~------------------dg~i~i 151 (387)
||+++++... ++.|.+.|+.+.++...+.- ....+..+++ + |++++++++++ ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7888887664 45799999999998774432 2346889998 5 89999998852 346777
Q ss_pred EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----------------------------
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD----------------------------- 202 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----------------------------- 202 (387)
.|. .+.+...++..-. ....++++|++ .++++.+.+
T Consensus 180 ID~------------~t~~v~~qI~Vgg-~pd~~~~spdG--k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 180 VDA------------DKWEVAWQVLVSG-NLDNCDADYEG--KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EET------------TTTEEEEEEEESS-CCCCEEECSSS--SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEC------------CCCeEEEEEEeCC-CccceEECCCC--CEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 777 3333444443222 23445566663 555555533
Q ss_pred ---------CcEEEEeCCC--CcE-EEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEecccccccc---ccccceeE
Q 035621 203 ---------CTCKFWRLLN--GTH-LSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQ---MHKGQELV 266 (387)
Q Consensus 203 ---------~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~~~~~~~ 266 (387)
+.|.+.|..+ ++. +..+..+....++.++|||+++++++. +..|.++|+.+..... ......+.
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 2478888887 555 677777778899999999999888875 8899999998642100 00011111
Q ss_pred eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----------ccEEEEeeccc
Q 035621 267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK----------RQVVMVLKNEL 315 (387)
Q Consensus 267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~ 315 (387)
... .-......++|+|+|...++.-.|++|.+||+.+ .+.+.++..+.
T Consensus 325 ~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 325 AEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp ECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred EEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 111 2345688999999995555677899999999988 66777777654
No 238
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.32 E-value=3.4e-09 Score=97.12 Aligned_cols=290 Identities=13% Similarity=0.063 Sum_probs=169.9
Q ss_pred CcEEEeeCC-CCcEEEEeC-CCCceeEeccCCCCC-----------ceeEEEcC-ccceeeeccccCCCCCeEEEEEccC
Q 035621 8 NEVILTSSP-EGPITAYNP-SSGAILAHFSGSRSP-----------RRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWS 73 (387)
Q Consensus 8 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~ 73 (387)
+..+++++. ++.|.-+|. .+|+.+-++...... ...+++.| +.. ....++.++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~-~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGK-TPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSS-SCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCc-ceeEEEEEcCCCEEEEEECCC
Confidence 445666666 889999999 899998777543221 12344421 111 001134467899999999999
Q ss_pred CCcccccCCCC-----Ceee-EEeccCCCEEEEec------CCCcEEEEeCCCCceeEEccCCCCC--------------
Q 035621 74 STPLHNIPVPE-----PVAP-LATTADGSYLFTGG------LSGNVYAISVPKGDILRSFSAHDKP-------------- 127 (387)
Q Consensus 74 ~~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~-------------- 127 (387)
|+.+....... .+.+ ..+ .++ .+++++ .+|.|+.+|.++|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 99887655332 2221 111 134 556655 3789999999999988766432110
Q ss_pred -----------------------e-EEEEEcCCCCEEEEEeCCC----------------cEEEEeCCcccccCCCCCCC
Q 035621 128 -----------------------V-SCLKISPDGSLLISGGDDG----------------VIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 128 -----------------------v-~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~~~~~ 167 (387)
+ ..+++.++..+++.+..++ .|..+|. .
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~------------~ 286 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA------------D 286 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET------------T
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC------------C
Confidence 0 1346667777777776653 6777777 3
Q ss_pred CccceEeeeccC----------CCeEEEEEeeCCCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCC-----------
Q 035621 168 DDLMLQKFVAHN----------DSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPC----------- 223 (387)
Q Consensus 168 ~~~~~~~~~~~~----------~~i~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------- 223 (387)
+++.+-.++... .++. +.. ++.++ ..++.++.+|.+.++|..+++.+.......
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 364 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK 364 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEE-EEE-ECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred CCceeeEeecCCCccccccCCCccEE-Eec-cccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccC
Confidence 444444433221 1221 111 11224 467778899999999999999987765321
Q ss_pred ---ce--------------------------eEEEeCCCCCeEEEEcc--------------------------------
Q 035621 224 ---AI--------------------------MGLALDPTETDFFAAGS-------------------------------- 242 (387)
Q Consensus 224 ---~v--------------------------~~~~~~~~~~~l~~~~~-------------------------------- 242 (387)
++ ..++++|+..++++...
T Consensus 365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~ 444 (599)
T 1w6s_A 365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG 444 (599)
T ss_dssp TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence 11 24567777776666432
Q ss_pred -------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621 243 -------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315 (387)
Q Consensus 243 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (387)
.|.+..||+.+++.... .. +..+...-.....+.+++.++.||.++.||.++|+++.+++...
T Consensus 445 ~~~~~~~~G~l~A~D~~tG~~~W~--------~~--~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 445 DRQNYEGLGQIKAYNAITGDYKWE--------KM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp BTTTTBCCEEEEEECTTTCCEEEE--------EE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcccCCCcCeEEEEECCCCCEEeE--------ec--CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 24455555554322111 10 01111111122256677789999999999999999999987543
Q ss_pred CCCceeEEE
Q 035621 316 AGSISEMVI 324 (387)
Q Consensus 316 ~~~v~~~~~ 324 (387)
...-+.+.+
T Consensus 515 g~~~~P~~y 523 (599)
T 1w6s_A 515 GAIGYPMTY 523 (599)
T ss_dssp CCCSCCEEE
T ss_pred CcEeccEEE
Confidence 322233444
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=3e-09 Score=91.91 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=134.4
Q ss_pred cCCCEEEEe-cCCCcEEEEeCCCC----ceeEEcc------C-CCCCeEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 035621 93 ADGSYLFTG-GLSGNVYAISVPKG----DILRSFS------A-HDKPVSCLKISPDGSLLISGGDD------GVIATVPI 154 (387)
Q Consensus 93 ~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~ 154 (387)
+++++|++. ..++.|+++|+.+. +...+++ . .......+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778877764 46789999998755 5555552 1 12245678889999 77766655 78999998
Q ss_pred CcccccCCCCCCCCccceEeeeccCCC---eEEEEEeeCCCCceEEEEe-------------------CCCcEEEEeCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDS---VTAITCCIGSFNSIIISCS-------------------MDCTCKFWRLLN 212 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~ 212 (387)
.+...+.++.....+ -..+.|+|+. +.+++.. .+.+|.+||+.+
T Consensus 172 ------------~T~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 172 ------------YSFEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp ------------TTCCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred ------------CCCeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 445556655432222 2346778875 6777774 368999999999
Q ss_pred CcEEEEEecC---CceeEEEe--CCCCCeEEEEcc------CCcEEEEecccccccccc----ccceeEeec-------c
Q 035621 213 GTHLSTVTFP---CAIMGLAL--DPTETDFFAAGS------DGLIYKGLLKYQSRQQMH----KGQELVTLA-------N 270 (387)
Q Consensus 213 ~~~~~~~~~~---~~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~----~~~~~~~~~-------~ 270 (387)
++.+.++... .....+.| +|+++++++++. ++.|.+|....+...... ........+ .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 9888888864 34555655 999999998875 568877766542211000 000000000 0
Q ss_pred cccccEEEEEEecCCCEEEEEeC-CCcEEEEECCC---ccEEEEeec
Q 035621 271 RHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEK---RQVVMVLKN 313 (387)
Q Consensus 271 ~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~ 313 (387)
+-...+..+.+|+||++|.++.. .+.|.+||+.. .+++..+..
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 00245788999999998887654 67999999863 456665543
No 240
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.29 E-value=7.1e-09 Score=95.17 Aligned_cols=287 Identities=12% Similarity=0.091 Sum_probs=166.7
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCc---------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPR---------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
.+++++.++.|.-+|..+|+.+-++....... ..+++..+. ++.++.++.+..+|..+|+.+...
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~------v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDK------VFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTE------EEEEETTTEEEEEESSSCCEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCE------EEEEeCCCEEEEEECCCCCEEeee
Confidence 44444443349999999999987775433211 222333322 333567899999999999987765
Q ss_pred CCCC-----Cee-eEEecc---CCC-EEEEec------CCCcEEEEeCCCCceeEEccCCCCCe----------------
Q 035621 81 PVPE-----PVA-PLATTA---DGS-YLFTGG------LSGNVYAISVPKGDILRSFSAHDKPV---------------- 128 (387)
Q Consensus 81 ~~~~-----~v~-~~~~~~---~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v---------------- 128 (387)
.... .+. ...+.. +++ .+++++ .+|.|..+|.++|+.+.........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 5322 111 111111 233 566664 37899999999999876553211000
Q ss_pred -------------------------EEEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCcccc
Q 035621 129 -------------------------SCLKISPDGSLLISGGD--------------------D----GVIATVPIFQLVD 159 (387)
Q Consensus 129 -------------------------~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~ 159 (387)
..++++|+..+++.+.. | +.|..+|.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~----- 298 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP----- 298 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT-----
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC-----
Confidence 13566676677776653 2 56778877
Q ss_pred cCCCCCCCCccceEeeec--cCC----CeEE-EEEeeC-CCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCCce---
Q 035621 160 EHTDDKNPDDLMLQKFVA--HND----SVTA-ITCCIG-SFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI--- 225 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~----~i~~-~~~~~~-~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v--- 225 (387)
.+++.+-.++. |.. .+.. +.+... .++ ..++.++.+|.++++|..+++.+..+.....+
T Consensus 299 -------~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 371 (582)
T 1flg_A 299 -------SSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWA 371 (582)
T ss_dssp -------TTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSE
T ss_pred -------CCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccc
Confidence 34444444432 210 0111 111110 123 37888999999999999999998777643200
Q ss_pred -------------------------------------------eEEEeCCCCCeEEEEcc--------------------
Q 035621 226 -------------------------------------------MGLALDPTETDFFAAGS-------------------- 242 (387)
Q Consensus 226 -------------------------------------------~~~~~~~~~~~l~~~~~-------------------- 242 (387)
..++++|+...+++...
T Consensus 372 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 451 (582)
T 1flg_A 372 SHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYL 451 (582)
T ss_dssp EEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred ccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCcee
Confidence 13456666666665432
Q ss_pred -------------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621 243 -------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 243 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (387)
+|.|+.||+.+++...... +..++..-.....+.+++.|+.||.++.||.++|+.+.
T Consensus 452 g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~----------~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 452 GMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK----------EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CEEEEEEESCSSCSEEEEEECTTTCCEEEEEE----------ESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccceeecCCCCCCcceEEEEECCCCCEEEEec----------CCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 4667777777643221110 11111111122246678889999999999999999999
Q ss_pred EeecccCCCceeEEE
Q 035621 310 VLKNELAGSISEMVI 324 (387)
Q Consensus 310 ~~~~~~~~~v~~~~~ 324 (387)
+++......-+.+.+
T Consensus 522 ~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 522 KFQTGSGIVSPPITW 536 (582)
T ss_dssp EEECSSCCCSCCEEE
T ss_pred EecCCCCcccCceEE
Confidence 998653322233444
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=2.1e-11 Score=104.65 Aligned_cols=234 Identities=9% Similarity=-0.102 Sum_probs=150.4
Q ss_pred eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec----------CCCcEEEEeCCCCceeEEccCC-------CCC
Q 035621 65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG----------LSGNVYAISVPKGDILRSFSAH-------DKP 127 (387)
Q Consensus 65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~-------~~~ 127 (387)
.|.++|..+++.+..+...... .+.++||+++++++. .++.|.+||+.+++.+.++... ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8999999999999988855444 899999999999886 3678999999999999888643 124
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEE--EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621 128 VSCLKISPDGSLLISGGD--DGVIAT--VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203 (387)
Q Consensus 128 v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~ 203 (387)
...++++|||++++++.. +..+.+ +|+. . +..+... +. ..+.|++ ...+++.+.|+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~------------t---v~~i~v~-~~---~~~~p~g-~~~~~~~~~dg 185 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGAS------------D---DQLTKSA-SC---FHIHPGA-AATHYLGSCPA 185 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTE------------E---EEEEECS-SC---CCCEEEE-TTEEECCCCTT
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchh------------h---ceEEECC-Cc---eEEccCC-CeEEEEEcCCC
Confidence 578999999999998875 457888 8882 2 2232211 11 1223444 24566677788
Q ss_pred cEEEEeCCC-----CcEEE----EEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe----ec
Q 035621 204 TCKFWRLLN-----GTHLS----TVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT----LA 269 (387)
Q Consensus 204 ~i~iwd~~~-----~~~~~----~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~ 269 (387)
.+.+.|+.+ ++... .+.. ..+. . .+++..++..+. +.+.+.|........... ..+.. ..
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~-~~~~~~~~~~~ 259 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA-IDGNESGRKAD 259 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECC-CCSSCTHHHHT
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEE-EEecccccccc
Confidence 888889876 33221 1111 1222 3 566666666666 999999986422110000 00000 00
Q ss_pred ccccccEEEEEEecCCCEEEEEeC---------CCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAE---------DGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
.........++++|+++.++.+.. ++.+.++|+.+++.+..+.... .+.+|.|+++
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~D 324 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQD 324 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCS
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCC
Confidence 000111112689999998776532 2356699999999999887543 5777777653
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=9e-10 Score=89.46 Aligned_cols=192 Identities=12% Similarity=0.089 Sum_probs=138.7
Q ss_pred ccccCCCcEEEeeCC--CCcEEEEeCCCCceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSP--EGPITAYNPSSGAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
|+|+|++.++++.+. ++.|.++|+.+++.+..+.-... ....+++.++..+.. .-.++.+.++|..+.+.+.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~-----t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQV-----VWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ETTCSEEEEEETTTTEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEE-----EecCCEEEEEECCCCcEEE
Confidence 568888766665543 57899999999999888753222 234567766555544 4578999999999999888
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-----KPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
.+... .-....+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++...+....++.|.+.|
T Consensus 101 ~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 101 NFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp EEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 88755 22345577788888887778899999999988887765221 236788888 675555555678999999
Q ss_pred CCcccccCCCCCCCCccceEeeecc-------------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAH-------------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 213 (387)
. .+.+.+..+... ....+.|++.|++ +.+++++...+++...++...
T Consensus 179 ~------------~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~-~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 179 A------------KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN-KRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T------------TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT-TEEEEEETTCSEEEEEEEEEC
T ss_pred C------------CCCcEEEEEECCCcccccccccccccCceEEEEEcCCC-CEEEEECCCCCeEEEEEEecc
Confidence 9 455555555432 1356899999986 578888888888988887543
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=2.2e-09 Score=87.13 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=141.2
Q ss_pred CceeEeccCCCCC--ceeEEEcCccceeeeccccC-CCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cC
Q 035621 28 GAILAHFSGSRSP--RRGLTFAGKPFIAASHISPT-TGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GL 103 (387)
Q Consensus 28 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 103 (387)
.+.+.++. |... ...++|++++.+..+ ++ ..++.|.++|+.+++.+..+..+.......+..+++.|+.. -.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvs---tg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFES---TGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEE---ECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEE---CCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec
Confidence 45566665 4432 579999985432221 12 23689999999999998887755443333344445556554 46
Q ss_pred CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC----
Q 035621 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---- 179 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---- 179 (387)
++.+.++|..+.+.+.++...... ...+++|++.++++..++.|.++|. .+......+....
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~------------~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDP------------HTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECT------------TTCCEEEEEECEETTEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEEC------------CCCcEEEEEEECCCCcc
Confidence 789999999999998888633111 2335567887777778899999998 3444444444221
Q ss_pred -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEc-cC
Q 035621 180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAG-SD 243 (387)
Q Consensus 180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~-~d 243 (387)
...+.+.+. + +.+++....++.|.+.|..+++.+..+... ...+.++|+|+++.+++++ ..
T Consensus 151 ~~~~nele~~-d--g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 151 VIRLNELEYI-N--GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp CCCEEEEEEE-T--TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred cccceeEEEE-C--CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 135677776 3 466666666889999999999999999743 3568999999987666655 58
Q ss_pred CcEEEEecccc
Q 035621 244 GLIYKGLLKYQ 254 (387)
Q Consensus 244 g~i~i~d~~~~ 254 (387)
+.++..++...
T Consensus 228 ~~v~~i~l~~~ 238 (266)
T 2iwa_A 228 PKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEEEEEC
T ss_pred CeEEEEEEecc
Confidence 88998888763
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=7.5e-10 Score=94.66 Aligned_cols=255 Identities=18% Similarity=0.168 Sum_probs=155.7
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-C
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-E 84 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~ 84 (387)
++|. |..++.+ |..+|. +++.+..+...........+..+. +..++.++.+..+|.. ++........ .
T Consensus 69 ~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~------l~v~t~~~~l~~~d~~-g~~~~~~~~~~~ 137 (330)
T 3hxj_A 69 KDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDI------LYVTSMDGHLYAINTD-GTEKWRFKTKKA 137 (330)
T ss_dssp TTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTE------EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred cCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCE------EEEEecCCEEEEEcCC-CCEEEEEcCCCc
Confidence 4444 4555554 888886 676655554333323333333222 2235678899999987 7665555433 3
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 164 (387)
.+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++.+.+ ++ +.|..+|.
T Consensus 138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d~---------- 202 (330)
T 3hxj_A 138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAINP---------- 202 (330)
T ss_dssp CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEECT----------
T ss_pred eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEECC----------
Confidence 456677777776 5667778899999988 877766665556677788877877544 44 77888873
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-ceeEEEeCCCCCeEEEEccC
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-AIMGLALDPTETDFFAAGSD 243 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 243 (387)
..............+.++...++ ..+..++.++.|..+| .+++.+..+.... .+..+.+.+++ .|++++.+
T Consensus 203 ---~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ 274 (330)
T 3hxj_A 203 ---DGTEKWNFYAGYWTVTRPAISED---GTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYD 274 (330)
T ss_dssp ---TSCEEEEECCSSCCCSCCEECTT---SCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTT
T ss_pred ---CCcEEEEEccCCcceeceEECCC---CeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCC
Confidence 22233333334455666666544 2566677788898887 4666666666433 23445555444 67788888
Q ss_pred CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
|.++.+|. .+. ..... ......+.++...++|. |..++.+|.+++...+..
T Consensus 275 ggl~~~d~-~g~--------~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 275 GHLYAINP-DGT--------EKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CEEEEECT-TSC--------EEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCEEEECC-CCc--------EEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 88999985 321 11111 11234566677777776 555788999998876544
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=2.7e-08 Score=82.25 Aligned_cols=250 Identities=10% Similarity=-0.029 Sum_probs=148.1
Q ss_pred CcEEEeeCCCCcEEEEeCCCCcee-----EeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAIL-----AHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
|.+|+.+.. +.|+.+++...... ..+......+..++++++ ..+... ....+.|..++.........+.
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~----d~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT----DISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE----ETTTTEEEEEESSSCCCEEEEC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE----ECCCCEEEEEecCCCCcEEEEE
Confidence 345666554 57899988654321 112212234678999873 322222 3457899999987655433332
Q ss_pred C-CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCc
Q 035621 82 V-PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQ 156 (387)
Q Consensus 82 ~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 156 (387)
. ......+++.+++..|+.+ ...+.|.++++..................++++|++..|+.+.. .+.|..+++..
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 2 2567899999976665554 45678999998654332222222356789999997666655554 36788877621
Q ss_pred ccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621 157 LVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET 235 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 235 (387)
.....+. ........+++.+++ +.++++-...+.|..+|+........+........++.. +.
T Consensus 156 -------------~~~~~~~~~~~~~P~gia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~ 219 (267)
T 1npe_A 156 -------------TNRRILAQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GK 219 (267)
T ss_dssp -------------CCCEEEECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TT
T ss_pred -------------CCcEEEEECCCCCCcEEEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CC
Confidence 1111111 223456788998864 355566666789999998765443333333445666654 45
Q ss_pred eEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621 236 DFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK 286 (387)
Q Consensus 236 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 286 (387)
.++++. ..+.|..+|..++. ....+..+.......+++.|++.
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~--------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISK--------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------EEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEEECCCCeEEEEeCCCCC--------ceEEEccccccccceeeecCccC
Confidence 555554 56899999987632 22222212222467788887764
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.21 E-value=1.3e-08 Score=93.29 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=141.7
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV 82 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~ 82 (387)
+..++.++.|+.|..+|..+|+.+.+...... .+.+ .....+..+....-.-.+.++.|..+|..+++.+..+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 55777888899999999999998876643210 1111 111222222211000001278999999999988765543
Q ss_pred CCCe---------------------------------------eeEEeccCCCEEEEecCC----------------CcE
Q 035621 83 PEPV---------------------------------------APLATTADGSYLFTGGLS----------------GNV 107 (387)
Q Consensus 83 ~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~i 107 (387)
..+. ..+++.++...++.+..+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 2211 235666766677776532 259
Q ss_pred EEEeCCCCceeEEccC--CC--------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCccccc---CCCC-CC----
Q 035621 108 YAISVPKGDILRSFSA--HD--------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDE---HTDD-KN---- 166 (387)
Q Consensus 108 ~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~---~~~~-~~---- 166 (387)
..+|.++|+.+..++. |. .++ -+...++|+ .++.++.+|.+.++|....... .... .+
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~ 353 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence 9999999998877652 21 122 122224664 5778889999999997432110 0000 00
Q ss_pred ---CCccceE--------------eeeccCC--CeEEEEEeeCCCCceEEEEe---------------------------
Q 035621 167 ---PDDLMLQ--------------KFVAHND--SVTAITCCIGSFNSIIISCS--------------------------- 200 (387)
Q Consensus 167 ---~~~~~~~--------------~~~~~~~--~i~~~~~~~~~~~~~l~s~~--------------------------- 200 (387)
....++. ......+ .-..++++|+. .+++...
T Consensus 354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCcccccccee
Confidence 0000000 0000000 00124455543 3333322
Q ss_pred ----------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621 201 ----------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 201 ----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
.++.|..||+.+++.+.++.....+....+...+..+++++.||.++.+|.++++.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 35789999999999998887655544444444567888899999999999988543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.19 E-value=1.6e-07 Score=77.56 Aligned_cols=238 Identities=8% Similarity=-0.067 Sum_probs=146.2
Q ss_pred CeEEEEEccCCCccc-----ccC-CCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC
Q 035621 64 GSVHLYNLWSSTPLH-----NIP-VPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (387)
+.|+.++++...... .+. ....+..++++++++.|+.+ ..++.|..+++........+.........++++|+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 467778876543211 111 12356789999976666655 45679999998766544333333356899999997
Q ss_pred CCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCC
Q 035621 137 GSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLN 212 (387)
Q Consensus 137 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~ 212 (387)
+..++.+ ...+.|.++++.. . ....+ .........+++.|+. +.++++... .+.|..+++..
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g------------~-~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDG------------T-QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTS------------C-SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTS
T ss_pred CCeEEEEECCCCEEEEEEcCC------------C-CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCC
Confidence 6555544 4567899988721 1 11111 1122456789998854 344444433 46888888754
Q ss_pred CcEEEEEe--cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 213 GTHLSTVT--FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 213 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
. ....+. .-.....++++|++..|+.+. ..+.|.+++...... ..+.. .......++.. .+..++
T Consensus 156 ~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------~~~~~-~~~~P~gi~~d-~~~lyv 223 (267)
T 1npe_A 156 T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---------RKVLE-GLQYPFAVTSY-GKNLYY 223 (267)
T ss_dssp C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---------EEEEE-CCCSEEEEEEE-TTEEEE
T ss_pred C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce---------EEEec-CCCCceEEEEe-CCEEEE
Confidence 3 233332 234678999999887776655 468899999875221 11111 12334566664 344444
Q ss_pred EEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621 290 SAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327 (387)
Q Consensus 290 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 327 (387)
+....+.|.++|..+++.+..+.......+.++++.+.
T Consensus 224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 55566899999999999998887543335777777654
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=7.5e-09 Score=96.90 Aligned_cols=248 Identities=11% Similarity=0.136 Sum_probs=148.5
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP 81 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~ 81 (387)
++..++.++.|+.|..+|..+|+.+.++..... .+.+ ..+..+..+....-.-.+.+|.|..+|..+|+.+..+.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 355778888899999999999999877754211 1111 11112222211100000136899999999998877654
Q ss_pred CC--C------------------------------CeeeEEeccCCCEEEEecCCC-------------------cEEEE
Q 035621 82 VP--E------------------------------PVAPLATTADGSYLFTGGLSG-------------------NVYAI 110 (387)
Q Consensus 82 ~~--~------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~ 110 (387)
.. . ....+++.|+...++.+..++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 0 012468888888888887765 39999
Q ss_pred eCCCCceeEEccC--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCcccccCCCCCC----------CC
Q 035621 111 SVPKGDILRSFSA--HD-------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDEHTDDKN----------PD 168 (387)
Q Consensus 111 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~ 168 (387)
|..+|+.+..++. |. .+.....+..+++ .++.++.+|.++++|............. ..
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999999877753 22 2222223333564 6889999999999998432111000000 00
Q ss_pred ccce------------EeeeccCC--CeEEEEEeeCCCCceEEE------------------------------------
Q 035621 169 DLML------------QKFVAHND--SVTAITCCIGSFNSIIIS------------------------------------ 198 (387)
Q Consensus 169 ~~~~------------~~~~~~~~--~i~~~~~~~~~~~~~l~s------------------------------------ 198 (387)
..++ ....+..+ .-..++++|.. .+++.
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCC--CEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 0000 00000000 00113444442 22222
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621 199 CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 199 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
...+|.|..||+.+++.+.++..........+...+..+++++.|+.++.||.++++.
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1234889999999999998888666655555666788999999999999999988543
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.14 E-value=5.2e-08 Score=89.35 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=138.3
Q ss_pred EEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCC------CCCeEEEEEccCCCcccc
Q 035621 11 ILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTT------GSGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 11 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~------~d~~v~vw~~~~~~~~~~ 79 (387)
++.++.|+.|..+|..+|+.+........ .+.+ ..+..+. ++.++ .++.|+.+|..+++.+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~------V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK------VIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE------EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCE------EEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 78888899999999999998876543220 1111 1112221 12222 479999999999988766
Q ss_pred cCCCCCe---------------------------------------eeEEeccCCCEEEEecCC----------------
Q 035621 80 IPVPEPV---------------------------------------APLATTADGSYLFTGGLS---------------- 104 (387)
Q Consensus 80 ~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d---------------- 104 (387)
+....+. ..+++.++...++.+..+
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence 5533211 134666777788877655
Q ss_pred CcEEEEeCCCCceeEEccC--CC--------CCeEEEEEc-CCC---CEEEEEeCCCcEEEEeCCcccccCCCCCC----
Q 035621 105 GNVYAISVPKGDILRSFSA--HD--------KPVSCLKIS-PDG---SLLISGGDDGVIATVPIFQLVDEHTDDKN---- 166 (387)
Q Consensus 105 g~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---- 166 (387)
+.|..+|.++|+.+..++. |. .++. +... .+| ..++.++.+|.+.++|.............
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 3799999999999877653 21 1121 2222 467 46777889999999998432111000000
Q ss_pred -------CCccceE--------------eeeccC--CCeEEEEEeeCCCCceEEEE------------------------
Q 035621 167 -------PDDLMLQ--------------KFVAHN--DSVTAITCCIGSFNSIIISC------------------------ 199 (387)
Q Consensus 167 -------~~~~~~~--------------~~~~~~--~~i~~~~~~~~~~~~~l~s~------------------------ 199 (387)
....++. .+.+.. ..-..++++|.. .+++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC--CEEEEeccccceeeecccccccCCcceecc
Confidence 0000000 000000 000122333321 111110
Q ss_pred ---------e------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621 200 ---------S------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 200 ---------~------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
+ .+|.|..||+.+++.+.+.....+...-.+...+..++.++.||.++.+|.++++.
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 1 35789999999999988887554433222334577888899999999999998543
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.14 E-value=1.3e-08 Score=81.54 Aligned_cols=190 Identities=13% Similarity=0.131 Sum_probs=132.9
Q ss_pred ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-C
Q 035621 29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-L 103 (387)
Q Consensus 29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 103 (387)
+.+.++. |... ...+.|+.+..+.+ ++.+| .|+.+|+++++.+..+..+.........++++.|+... .
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~~~Lyes-----tG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRNGYFYES-----TGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEETTEEEEE-----EEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEec-CCCCcccceEEEECCEEEEE-----CCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee
Confidence 4566664 4444 47888985433332 44444 89999999999998888776666555555566666554 5
Q ss_pred CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--C--
Q 035621 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--N-- 179 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 179 (387)
++.+.+||..+.+.+.++...... ..++ ++++.|+.+..++.|.++|. .+...+..+... .
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp------------~T~~v~~~I~V~~~g~~ 170 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDP------------ESLTPVRTITVTAHGEE 170 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECT------------TTCSEEEEEECEETTEE
T ss_pred CCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcC------------CCCeEEEEEEeccCCcc
Confidence 789999999999999988743222 2333 57777777777788999998 344445544432 1
Q ss_pred -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------------CceeEEEeCCCCCeEEEEcc
Q 035621 180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------------CAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~ 242 (387)
..++.+.+. + +.+.+..-.+..|.+.|..+++.+..+... ...+.++|+|+++.|++.+.
T Consensus 171 ~~~lNELe~~-~--G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 171 LPELNELEWV-D--GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEE-T--TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccceeEEE-C--CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 234456665 3 466666667889999999999999998742 24689999999888887765
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.11 E-value=2.9e-08 Score=79.58 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=131.5
Q ss_pred ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE-ecCCC
Q 035621 29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT-GGLSG 105 (387)
Q Consensus 29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg 105 (387)
+.+.++. |... ...+.|+.+..+.+ .+.+|.|+++|+++++.+..+ .+.........++++.|+. ...++
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~s-----tG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQGHFFES-----TGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEE-----ETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC
T ss_pred EEEEEEc-CCCccccceEEEECCEEEEE-----cCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC
Confidence 4556664 4433 47888887544443 577888999999999998888 6666555334444444444 44678
Q ss_pred cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--C---C
Q 035621 106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--N---D 180 (387)
Q Consensus 106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~---~ 180 (387)
.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|. .+.+.+..+... . .
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp------------~T~~v~~~I~V~~~g~~v~ 181 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEP------------DGFALVGAVQVKLRGQPVE 181 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECT------------TTCCEEEEEECEETTEECC
T ss_pred EEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcC------------CCCeEEEEEEeCCCCcccc
Confidence 999999999999998874322 23444 46788888877899999998 344444444332 2 2
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEcc
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~ 242 (387)
.++.+.|. + +.+++....+..|.+.|..+++.+..+... ...+.++++|+++.|++.+.
T Consensus 182 ~lNeLe~~-d--G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 182 LINELECA-N--GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CEEEEEEE-T--TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccccEEe-C--CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 34566665 3 466666656889999999999999988732 35689999998877776654
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=1.3e-08 Score=81.58 Aligned_cols=177 Identities=11% Similarity=0.090 Sum_probs=122.9
Q ss_pred ccccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
|.|+ ++.++.+.+.+| .|+++|+++++.+.++...... ...++...+..+.. .-.++.+.+||..+.+.+.
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~l-----tw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGL-----TWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ESSSSEEEEEETTTCCEEE
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEE-----EeeCCEEEEEECccCcEEE
Confidence 3566 677777777665 8999999999998888644332 23466666655554 3478999999999999999
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
++..+. ....+.++++.|+....++.|.++|..+.+.+..+... . ..++.+.|. +|+..+..-.+..|.+.|
T Consensus 122 ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 122 SFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 888654 33344467888887777788999999999888876532 1 334567776 676555555678899998
Q ss_pred CCcccccCCCCCCCCccceEeeec------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVA------------HNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
. .+++.+..+.. .....+.|++.|+. +.++++|-
T Consensus 199 p------------~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-~~lfVTGK 244 (262)
T 3nol_A 199 P------------ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-HRLFVTGK 244 (262)
T ss_dssp T------------TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-TEEEEEET
T ss_pred C------------CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC-CEEEEECC
Confidence 8 34444443332 12356899999986 45666653
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.06 E-value=1.3e-07 Score=75.22 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=132.6
Q ss_pred ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cC
Q 035621 29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GL 103 (387)
Q Consensus 29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 103 (387)
+.+.+++ |... ...+.|+++..+.+ .+.. ..|+.+|+.+++.+..+..+.........+.++.|+.. ..
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~~~Lyes-----tG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLRGHLYES-----TGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEE-----ECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEcC-CCCccccccEEEECCEEEEE-----CCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 4566664 5443 66899998554444 3443 58999999999999988877766555555555555544 46
Q ss_pred CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC----
Q 035621 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---- 179 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---- 179 (387)
++.+.+||..+.+.+.++.....+ ..++ +++..|+.+..++.|.++|. .+...+.++....
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp------------~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDP------------DTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECT------------TTCCEEEEEECEETTEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeC------------CCCeEEEEEEEccCCcc
Confidence 789999999999999988743322 3444 46777777777889999998 3444444444321
Q ss_pred -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEcc
Q 035621 180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~ 242 (387)
..++.+.+. + +.+++..-.+..|.+.|..+++.+..+... ...+.++++|+++.|++.+.
T Consensus 149 ~~~lNeLe~~-~--G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 149 LDNLNELEWV-N--GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CCCEEEEEEE-T--TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccceeeEEe-C--CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 234555554 2 466666656889999999999999988722 24689999998887777664
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.04 E-value=2.2e-08 Score=80.24 Aligned_cols=174 Identities=9% Similarity=0.012 Sum_probs=124.1
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc--eeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR--RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~ 80 (387)
.|+ ++.++.+.+.+|.|+++|+++++.+.++ -. ... ..+++.++..+.. .-.++.+.+||..+.+.+.++
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~l-----tw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQL-----TWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEE-----ESSSCEEEEEETTTTEEEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEE-----EccCCEEEEEECCcCcEEEEE
Confidence 455 4667778888899999999999998877 22 223 3477777666555 357899999999999999988
Q ss_pred CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621 81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HD---KPVSCLKISPDGSLLISGGDDGVIATVPIF 155 (387)
Q Consensus 81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 155 (387)
.....-..++ ++++.|+.+..++.|.++|.++.+.+.++.- +. ..++.+.|. +|+..+..-.+..|.+.|.
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp- 208 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP- 208 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT-
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC-
Confidence 8654434444 6788888887789999999999998887753 22 245677777 6765555556788999988
Q ss_pred cccccCCCCCCCCccceEeeec-------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVA-------------HNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
.+++.+..+.. ...-.+.|++.|+. +++++||-
T Consensus 209 -----------~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~-~rlfVTGK 254 (268)
T 3nok_A 209 -----------ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS-GRIFMTGK 254 (268)
T ss_dssp -----------TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT-CCEEEEET
T ss_pred -----------CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC-CEEEEeCC
Confidence 34444444332 12356899999876 46777664
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.04 E-value=1.2e-06 Score=76.28 Aligned_cols=241 Identities=9% Similarity=-0.055 Sum_probs=151.3
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL 140 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 140 (387)
....|+..++..............+..++|.+.+..|+.. ...+.|..+++........+.........+++.+.+..|
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 3456788887766555555555678899999866666554 466789999987665444443333456788998755544
Q ss_pred -EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcEEEE
Q 035621 141 -ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTHLST 218 (387)
Q Consensus 141 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~ 218 (387)
++-...+.|.+.++. .......+.........+++.|.. +.++++-... +.|..+++........
T Consensus 174 Y~~d~~~~~I~~~~~d------------g~~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~ 240 (386)
T 3v65_B 174 YWTDSGTSRIEVANLD------------GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRII 240 (386)
T ss_dssp EEEETTTTEEEECBTT------------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EEEcCCCCeEEEEeCC------------CCceEEeecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 454556778887762 111122222233556889998764 4555555445 7888888765433333
Q ss_pred Ee-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 219 VT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 219 ~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
.. .-...+.++++|++..|+.+. ..+.|..+++..... ..+..........+++. .+.++++-...+.
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 310 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-EDSLYWTDWHTKS 310 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEEECCCCCceEEEEE-CCEEEEeeCCCCe
Confidence 32 234578999998777766664 467899988764211 11111223456788883 4556666667888
Q ss_pred EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 297 VYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|..++..+++.+..+..... .+.++.+..
T Consensus 311 V~~~~~~~G~~~~~i~~~~~-~p~gi~v~~ 339 (386)
T 3v65_B 311 INSANKFTGKNQEIIRNKLH-FPMDIHTLH 339 (386)
T ss_dssp EEEEETTTCCSCEEEECSCS-CCCCEEEES
T ss_pred EEEEECCCCcceEEEccCCC-CCceEEEEc
Confidence 99999778887777765433 556665543
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.04 E-value=3.2e-06 Score=81.24 Aligned_cols=273 Identities=9% Similarity=0.066 Sum_probs=166.6
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-- 81 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-- 81 (387)
.+++++.+ |+.++-|..|+..+++..... ..+...|.++...+++.+-. ++.++-+..||..+++......
T Consensus 181 d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-----gt~~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 181 RQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-----ATEGAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp EETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-----EEBSSCEEEEETTTTEEEEECCCT
T ss_pred CCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-----EECCCCeEEEeCCCCeEEEeecCC
Confidence 34565444 555555889998776654322 12345578887766443332 3334458888876654322111
Q ss_pred ------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-------CCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621 82 ------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-------HDKPVSCLKISPDGSLLISGGDDGV 148 (387)
Q Consensus 82 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~ 148 (387)
....|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~G 331 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGG 331 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSC
T ss_pred CCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCC
Confidence 135688999988887554 4445 489999877665433211 235799999998886 556777777
Q ss_pred EEEEeCCcccccCCCCCCCCccceEeee-------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621 149 IATVPIFQLVDEHTDDKNPDDLMLQKFV-------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT- 220 (387)
Q Consensus 149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 220 (387)
|..|+.... ....+. .....|.++...++ + .|..|+.++-|..||..+++......
T Consensus 332 l~~~~~~~~-------------~~~~~~~~~~~~~l~~~~V~~i~~d~~--g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~ 395 (795)
T 4a2l_A 332 LNYYHPIRN-------------RFKNIRNIPYKNSLSDNVVSCIVEDKD--K-NLWIGTNDGGLNLYNPITQRFTSYTLQ 395 (795)
T ss_dssp EEEECGGGG-------------SSEEECCCTTSSSCSCSSEEEEEECTT--S-CEEEEESSSCEEEECTTTCCEEEECCC
T ss_pred eEEeCCCcc-------------cceEEcCCCCCCCCCCCeeEEEEECCC--C-CEEEEECCCCeEEEcCCCCcEEEEecC
Confidence 888876221 111111 12345777765544 3 45567777779999988765433211
Q ss_pred --------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 221 --------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 221 --------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
....|.+++..++++.|.+|+.++-+..+|..++.......... ......|.++...++|.+.+..
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~-----~l~~~~v~~i~~d~~g~lwigt- 469 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS-----QLVNENVYAILPDGEGNLWLGT- 469 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS-----CCSCSCEEEEEECSSSCEEEEE-
T ss_pred CCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC-----CcCCCeeEEEEECCCCCEEEEe-
Confidence 13568899988888757778877779999987643221111000 0234578999998888765544
Q ss_pred CCCcEEEEECCCccEEE
Q 035621 293 EDGSVYIWEIEKRQVVM 309 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~ 309 (387)
.+ -|.+||..+++...
T Consensus 470 ~~-Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 470 LS-ALVRFNPEQRSFTT 485 (795)
T ss_dssp SS-CEEEEETTTTEEEE
T ss_pred cC-ceeEEeCCCCeEEE
Confidence 44 58899988776543
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.04 E-value=1.5e-06 Score=74.54 Aligned_cols=241 Identities=8% Similarity=-0.060 Sum_probs=150.1
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE-
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL- 139 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 139 (387)
....|+..++..............+..++|.+.+..|+.. ...+.|..+++........+.........+++.+.+..
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 3455777777655544444445668899999866666655 45678999998766544444333345678999985554
Q ss_pred EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcEEEE
Q 035621 140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTHLST 218 (387)
Q Consensus 140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~ 218 (387)
.++-...+.|.+.++. .................+++.|.. +.++++-... +.|..+++........
T Consensus 131 y~~d~~~~~I~~~~~d------------G~~~~~l~~~~l~~P~~iavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~ 197 (349)
T 3v64_C 131 YWTDSGTSRIEVANLD------------GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRII 197 (349)
T ss_dssp EEEETTTTEEEEEETT------------SCSCEEEECTTCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred EEEcCCCCeEEEEcCC------------CCceEEEEeCCCCCcceEEEecCc-CeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 4555566789888872 111112222333456889998864 4555565555 7888888764332222
Q ss_pred Ee-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 219 VT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 219 ~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
+. .-...+.++++|++..|+.+. ..+.|..+++..... ..+..........+++. .+..+++-...+.
T Consensus 198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---------~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---------EEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 22 234578999998777776664 467899998764211 11111223456778883 4556666667788
Q ss_pred EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 297 VYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
|..++..+|+.+..+..... .+.++.+..
T Consensus 268 V~~~~~~~G~~~~~i~~~~~-~p~gi~v~~ 296 (349)
T 3v64_C 268 INSANKFTGKNQEIIRNKLH-FPMDIHTLH 296 (349)
T ss_dssp EEEEETTTCCSCEEEECSCS-CCCCEEEEC
T ss_pred EEEEEccCCCccEEeccCCC-CCceEEEEc
Confidence 99999777877777764433 456665543
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.00 E-value=5.9e-06 Score=69.89 Aligned_cols=240 Identities=13% Similarity=0.005 Sum_probs=147.7
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCC----CceeEEccCCCCCeEEEEEcCCC
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPK----GDILRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~ 137 (387)
...|+..|+...+....+.....+..++|.+.++.|+.. ..++.|..+++.. ......+.........+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 456888888877665555555678899999876666555 4568999999875 22222233223456889998755
Q ss_pred CEE-EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcE
Q 035621 138 SLL-ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTH 215 (387)
Q Consensus 138 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~ 215 (387)
..| ++-...+.|.++++. .................+++.|.. +.++++.... +.|..+++.. ..
T Consensus 89 ~~ly~~d~~~~~I~~~~~~------------g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTK------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp TEEEEEETTTTEEEEEETT------------SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTS-CC
T ss_pred CeEEEEECCCCEEEEEeCC------------CCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEEcCCC-CC
Confidence 544 454567889998872 111111222233466889998764 3455554333 6888888753 33
Q ss_pred EEEEe--cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 216 LSTVT--FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 216 ~~~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
...+. .-...+.++++|++..|+.+. ..+.|..+|+...... .+... .........+++. .+.++++-.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~------~~~~~-~~~~~~P~giav~-~~~ly~~d~ 226 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------TILED-EKRLAHPFSLAVF-EDKVFWTDI 226 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEEEC-TTTTSSEEEEEEE-TTEEEEEET
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE------EEeec-CCccCCcEEEEEE-CCEEEEEEC
Confidence 33332 235678999999877776665 4678999998642111 11111 1122346778885 455666666
Q ss_pred CCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
..+.|..++..+++.+..+..... .+.+|.+.
T Consensus 227 ~~~~V~~~~~~~g~~~~~i~~~~~-~p~~i~v~ 258 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVNLLAENLL-SPEDMVLF 258 (316)
T ss_dssp TTTEEEEEETTTCCCCEEEECSCS-CCCCEEEE
T ss_pred CCCeEEEEeCCCCcceEEEecCCC-CceEEEEe
Confidence 778999999888887777764433 34555444
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.99 E-value=1.7e-07 Score=85.97 Aligned_cols=242 Identities=10% Similarity=0.048 Sum_probs=138.5
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Cce-eEEEcCc---cceeeeccccCC------CCCeEEEEEccC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRR-GLTFAGK---PFIAASHISPTT------GSGSVHLYNLWS 73 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~~~~~~~~~~~------~d~~v~vw~~~~ 73 (387)
+..++.++.|+.|..+|.++|+.+........ .+. ......+ +. ..++.++ .++.|..+|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~---~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGK---VLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCC---EEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCc---EEEEEeccccccCCCCEEEEEECCC
Confidence 45677788899999999999999876653321 111 1111111 00 0222232 478999999999
Q ss_pred CCcccccCCCC------------------------------------------CeeeEEeccCCCEEEEecC--------
Q 035621 74 STPLHNIPVPE------------------------------------------PVAPLATTADGSYLFTGGL-------- 103 (387)
Q Consensus 74 ~~~~~~~~~~~------------------------------------------~v~~~~~~~~~~~l~~~~~-------- 103 (387)
++.+....... .-..+++.|+...++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 98766443211 0023566677777776653
Q ss_pred ------------C----CcEEEEeCCCCceeEEccC--CC--------CCeEEEEEc-CCCC---EEEEEeCCCcEEEEe
Q 035621 104 ------------S----GNVYAISVPKGDILRSFSA--HD--------KPVSCLKIS-PDGS---LLISGGDDGVIATVP 153 (387)
Q Consensus 104 ------------d----g~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd 153 (387)
| +.|..+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 5799999999999887642 32 1221 2221 4664 788899999999999
Q ss_pred CCccccc---CCCC-CC-------CCccce--------------------EeeeccCC--CeEEEEEeeCCCCceEEEE-
Q 035621 154 IFQLVDE---HTDD-KN-------PDDLML--------------------QKFVAHND--SVTAITCCIGSFNSIIISC- 199 (387)
Q Consensus 154 ~~~~~~~---~~~~-~~-------~~~~~~--------------------~~~~~~~~--~i~~~~~~~~~~~~~l~s~- 199 (387)
....... .... .+ ....++ .......+ .-..++++|.. .+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~ 430 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDT--GLFYVPA 430 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTT--CCEEEEE
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCC--CEEEEec
Confidence 7432111 0000 00 000000 00000000 00122333332 222221
Q ss_pred --------------------------------eCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621 200 --------------------------------SMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247 (387)
Q Consensus 200 --------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 247 (387)
..+|.|..||+.+++.+.++....+...-.....+..++.++.||.++
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEE
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEE
Confidence 136889999999999998887554443323333577888899999999
Q ss_pred EEeccccc
Q 035621 248 KGLLKYQS 255 (387)
Q Consensus 248 i~d~~~~~ 255 (387)
.||.++++
T Consensus 511 A~D~~tG~ 518 (582)
T 1flg_A 511 AFDAKSGK 518 (582)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 99999854
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.97 E-value=1.6e-07 Score=74.70 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=120.8
Q ss_pred ccccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
|.|++ +.++.+.+.+| .|+.+|+++++.+.++.-.... -..+++..+..+.. .-.++.+.+||..+.+.+.
T Consensus 26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~l-----tw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQL-----TWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ESSSSEEEEEETTTTEEEE
T ss_pred EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEE-----EeeCCEEEEEECCcCcEEE
Confidence 34665 56666666654 8999999999998887643332 23456666555544 4578999999999999999
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
++..+..-. .+.++++.|+.+..++.|.++|..+.+.+.++.-. . ..++.+.+. +|+..+..-.+..|.+.|
T Consensus 100 ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 100 RFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARID 176 (243)
T ss_dssp EEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred EEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence 888665433 44467777777777889999999999888777532 1 245666665 666555554677888888
Q ss_pred CCcccccCCCCCCCCccceEeeec-------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVA-------------HNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
.. ++..+..+.. ...-.+.|++.|.. +++++||-
T Consensus 177 p~------------tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~-~~lfVTGK 223 (243)
T 3mbr_X 177 PA------------SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH-DRLFVTGK 223 (243)
T ss_dssp TT------------TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT-TEEEEEET
T ss_pred CC------------CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC-CEEEEECC
Confidence 83 3333333321 22456899999875 46666663
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.97 E-value=3e-06 Score=71.34 Aligned_cols=249 Identities=13% Similarity=0.038 Sum_probs=140.0
Q ss_pred CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC-
Q 035621 27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG- 105 (387)
Q Consensus 27 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 105 (387)
+.+.+..+... .....++|++++.+... ...++.|..||... +....+.....+..+++.++|+++++.....
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~----d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVT----NHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEE----ETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEE----eCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCc
Confidence 34455555433 44678999886543332 34678899998754 3444444556788999999999666553322
Q ss_pred -cEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc-ccCCCCCCCCccceEeeeccCCCe
Q 035621 106 -NVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV-DEHTDDKNPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 106 -~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 182 (387)
.|..+|..+++...... ........++..+++..+++-..++.|..+|..... ...... ..... ......-...
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~--~~~~~-~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH--PMLAR-SNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC--GGGSC-SSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC--Ccccc-ccccCCCCcC
Confidence 47777877777543322 122334556666655545554468888888873210 000000 00000 0000111233
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcE--EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTH--LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM 259 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 259 (387)
+.+ ++++ +.++++-...+.|..|++.. ++. ...+........++++++|+++++....+.|.+++... ..
T Consensus 172 ngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~--- 244 (306)
T 2p4o_A 172 NGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-ST--- 244 (306)
T ss_dssp EEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CE---
T ss_pred CCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CE---
Confidence 445 5664 34556666678999999874 321 12222224567789999998766666688999998642 11
Q ss_pred cccceeEeecccccccEEEEEEe---cCCCEEEEEeCCC
Q 035621 260 HKGQELVTLANRHDGVVVSVMMM---NEGKNLVSAAEDG 295 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg 295 (387)
............+++++|. |+++.|+.++..+
T Consensus 245 ----~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 245 ----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ----EEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 0011111223568999998 8877776655443
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=1.7e-05 Score=76.19 Aligned_cols=270 Identities=11% Similarity=0.114 Sum_probs=163.7
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccC-------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSG-------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
++|.+.+ |+.++-+..||..+++....... ....|.++...+++.+-. |+.+ -+.+|+..++....
T Consensus 224 ~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~-Gl~~~~~~~~~~~~ 296 (795)
T 4a2l_A 224 SPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-----GTFN-DLNIYHEGTDSFAS 296 (795)
T ss_dssp ETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-----EESS-CEEEEETTTTEEEE
T ss_pred CCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-----EeCC-hhheEcCCCCeEEE
Confidence 4455444 44444588999877654432221 134588888887554432 2334 58888876654332
Q ss_pred ccC--------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc------CCCCCeEEEEEcCCCCEEEEEe
Q 035621 79 NIP--------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS------AHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 79 ~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
... ....|.++...++|. |-.|+.++-|..|+..+........ -....|.++...++++ |..|+
T Consensus 297 ~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt 374 (795)
T 4a2l_A 297 YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGT 374 (795)
T ss_dssp ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEE
T ss_pred EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEE
Confidence 211 225689999998887 4456666679999876554322111 1235699999988876 55577
Q ss_pred CCCcEEEEeCCcccccCCCCCCCCccceEeee---------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
.++-|..||... . ....+. .....|.++...++ +++|..|+.++-|..||..+++.
T Consensus 375 ~~~Gl~~~~~~~------------~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 375 NDGGLNLYNPIT------------Q-RFTSYTLQEDESARGIGSNNIKAVYVDEK--KSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp SSSCEEEECTTT------------C-CEEEECCC------CCSCSCEEEEEEETT--TTEEEEEETTTEEEEEETTTCCE
T ss_pred CCCCeEEEcCCC------------C-cEEEEecCCCCcccCCCCccEEEEEEcCC--CCEEEEEeCcCceeEEeCCCCcE
Confidence 777788888732 1 111111 12356777776544 35367777777799999887764
Q ss_pred EEEEec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 216 LSTVTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 216 ~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
. .+.. ...|.++...++|...+.. . +-+.+|+..+............ ..-....|.++...++|.+.+
T Consensus 440 ~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 440 E-NFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDG---TPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp E-EECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTC---CBCCCCCEEEEEECTTCCEEE
T ss_pred E-EeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccc---cccCCceEEEEEECCCCCEEE
Confidence 3 3332 3568899988887755544 4 4588888765322211100000 011246789999998888666
Q ss_pred EEeCCCcEEEEECCCccE
Q 035621 290 SAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 290 s~~~dg~i~iwd~~~~~~ 307 (387)
.. . +-|..||..+++.
T Consensus 514 gt-~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 514 GG-E-EGLSVFKQEGLDI 529 (795)
T ss_dssp EE-S-SCEEEEEEETTEE
T ss_pred Ee-C-CceEEEeCCCCeE
Confidence 54 3 4588999887765
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.92 E-value=2.1e-06 Score=72.87 Aligned_cols=204 Identities=10% Similarity=-0.019 Sum_probs=128.7
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--------------------CCCCeEEEEEcC-CCCEEEEE
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--------------------HDKPVSCLKISP-DGSLLISG 143 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~~ 143 (387)
...++++.+++++++++..++.|..|+..+++... +.. ....+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 45678899999878888888999999987655432 210 013578999998 554 5555
Q ss_pred eCCCcEEEEeCCcccccCCCCCCCCccceEeee-----ccCCCeEEEEEee-CCCCceEEEEeC----------------
Q 035621 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-----AHNDSVTAITCCI-GSFNSIIISCSM---------------- 201 (387)
Q Consensus 144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~l~s~~~---------------- 201 (387)
...+.|..+|... . .+..+. ........+++.+ ++ ++.++-..
T Consensus 98 d~~~~i~~~d~~~------------g-~~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 98 DCYYHLSVVGSEG------------G-HATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp ETTTEEEEECTTC------------E-ECEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred ECCCCEEEEeCCC------------C-EEEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccC
Confidence 5555578887621 1 111111 0113456788877 53 66665432
Q ss_pred -CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621 202 -DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279 (387)
Q Consensus 202 -d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (387)
++.|..||..+++.......-.....++++|+++.|+++ ...+.|++|++...... ....... ..+ ...+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~---~~g-P~gi 234 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVK---IPN-PGNI 234 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEE---CSS-EEEE
T ss_pred CCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEe---CCC-CCCe
Confidence 367888998777644333333456789999999977666 55789999998752110 0111111 123 7889
Q ss_pred EEecCCCEEEEEeC----------CCcEEEEECCCccEEEEeecc
Q 035621 280 MMMNEGKNLVSAAE----------DGSVYIWEIEKRQVVMVLKNE 314 (387)
Q Consensus 280 ~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~ 314 (387)
+++++|++.++... .+.|..+|. .++.+..+...
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 99999987776544 467888886 47777777644
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.92 E-value=1.6e-05 Score=69.52 Aligned_cols=241 Identities=14% Similarity=0.014 Sum_probs=149.9
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCC-
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPD- 136 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~- 136 (387)
...|+..++........+.....+..++|++.+..|+... ..+.|+.+++... .....+.........+++.+.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence 4678888887666555555567789999998766666554 5678999988652 233333334456789999984
Q ss_pred CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCCCcE
Q 035621 137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLNGTH 215 (387)
Q Consensus 137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~ 215 (387)
+++.++-...+.|.+.++. .......+.........|++.|.. +.++++-.. .+.|...++.....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~------------g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTK------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp TEEEEEETTTTEEEEECTT------------TCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC
T ss_pred CceEEEECCCCeEEEEeCC------------CCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc
Confidence 4445555567888888872 222222222334457889998864 344444423 47888888865443
Q ss_pred EEEEec-CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621 216 LSTVTF-PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 216 ~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
...+.. -.....+++++++..|+.+. ..+.|..+|+....+. .+.. ....-.....+++. .+.++++-..
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~------~~~~-~~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------TILE-DEKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE------EEEE-CSSTTSSEEEEEEE-TTEEEEEESS
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE------EEEe-CCCCCCCCEEEEEe-CCEEEEecCC
Confidence 333332 25688999999887777764 4678999988652211 1111 11122345677774 3456666667
Q ss_pred CCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 294 DGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
.+.|..+|..+|+.+..+..... .+.++.+.
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~-~p~~i~v~ 340 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLL-SPEDMVLF 340 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCS-CEEEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCC-CCceEEEE
Confidence 78899999888888777764433 45566544
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.92 E-value=3.6e-07 Score=85.67 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=145.5
Q ss_pred cccC-CCcEEEeeCCCC-----------cEEEEeCCCCcee--EeccC-CCCCceeEEEcCccceeeeccccCC-CCCeE
Q 035621 3 HHLP-CNEVILTSSPEG-----------PITAYNPSSGAIL--AHFSG-SRSPRRGLTFAGKPFIAASHISPTT-GSGSV 66 (387)
Q Consensus 3 ~~s~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~-~d~~v 66 (387)
++.| ++++++.|+.++ .+.+||+.+++.. ..+.. +.....++++..++.+... |+ .+..+
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~----GG~~~~~v 267 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDAKKT 267 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSSTTCE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe----CCCCCCce
Confidence 3456 888888886543 5889999877542 22221 2222334566554333222 44 45689
Q ss_pred EEEEccCCCcccc--cCCCCCeeeEEeccCCCEEEEec-CC-----CcEEEEeCCCCceeEEc-----cCCCCCeEEEEE
Q 035621 67 HLYNLWSSTPLHN--IPVPEPVAPLATTADGSYLFTGG-LS-----GNVYAISVPKGDILRSF-----SAHDKPVSCLKI 133 (387)
Q Consensus 67 ~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~ 133 (387)
.+||..+++.... +.....-.+++..++++.++.|+ .+ ..+.+||..+.+-...- ...... ....+
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~ 346 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLY 346 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGG
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cccee
Confidence 9999987643332 22222334556667999999998 34 46999999876543320 000000 00122
Q ss_pred cCCCCEEEEEeCCC---------cEEEEeCCcccccCCCCCCCCccceEeeeccC---------CCeEEEEEeeCCCCce
Q 035621 134 SPDGSLLISGGDDG---------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---------DSVTAITCCIGSFNSI 195 (387)
Q Consensus 134 ~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~ 195 (387)
..++..++.++.+| .+..||... ..-......+. ..-.++.+.. .++.+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~------------~~w~~~~~~~~~~~~~~~~~~~~~av~~~~-~~~~i 413 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG------------SGDVKSAGKRQSNRGVAPDAMCGNAVMYDA-VKGKI 413 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECST------------TCEEEEEEECEETTEECCCCBTCEEEEEET-TTTEE
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCC------------cceeecCCccccccccCCCCCCCceEeccC-CCCeE
Confidence 34555556665554 456666622 11111111111 1122333322 23578
Q ss_pred EEEEeCCC-----------cEEEEeCCCCcEEEEE--e--cCCceeEEEeCCCCCeEEEEccC-----------CcEEEE
Q 035621 196 IISCSMDC-----------TCKFWRLLNGTHLSTV--T--FPCAIMGLALDPTETDFFAAGSD-----------GLIYKG 249 (387)
Q Consensus 196 l~s~~~d~-----------~i~iwd~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~ 249 (387)
++.|+.++ .+.+||..+.+-.... . .+..-.+++..|+++.++.|+.+ ..+.+|
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence 88887543 6888888876644332 2 22334556777899999998864 468899
Q ss_pred eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621 250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
|..+........ ............+.|+++.++.|+.
T Consensus 494 dp~t~~W~~~~~-------~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTFYKQNP-------NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEEEECCC-------CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCceeecCC-------CCCccccccHhhcCCCcEEEecCCC
Confidence 987643222111 0111122234456789999999985
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.86 E-value=3.9e-06 Score=71.25 Aligned_cols=234 Identities=10% Similarity=0.023 Sum_probs=132.9
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-C-------------------CCCCeeeEEecc-CCCEE
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-P-------------------VPEPVAPLATTA-DGSYL 98 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~-------------------~~~~v~~~~~~~-~~~~l 98 (387)
...++++.+++.+ +.++..++.|..|+..+++..... . ....+..+++.+ +++ |
T Consensus 20 ~p~~i~~d~~g~~----l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l 94 (322)
T 2fp8_A 20 APNSFTFDSTNKG----FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L 94 (322)
T ss_dssp CCCCEECCTTCSS----EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E
T ss_pred CceEEEEcCCCCE----EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-E
Confidence 3567888875432 222556788988987654332110 0 013478899998 554 5
Q ss_pred EEecCCCcEEEEeCCCCceeEEccC-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCC
Q 035621 99 FTGGLSGNVYAISVPKGDILRSFSA-----HDKPVSCLKISP-DGSLLISGGD-----------------DGVIATVPIF 155 (387)
Q Consensus 99 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~ 155 (387)
+++...+.|..+|..+++. ..+.. .......+++.+ +|++.++-.. ++.|..||..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 5554445588898765542 22211 123478899999 8886665432 3567777762
Q ss_pred cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCc--EEEEE-ecCCceeEEEeC
Q 035621 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGT--HLSTV-TFPCAIMGLALD 231 (387)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~ 231 (387)
... ...+.........+++++++ +.| ++-+..+.|..|++.... ....+ ..+. ...+++.
T Consensus 174 ------------~~~-~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 174 ------------TKE-TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp ------------TTE-EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ------------CCE-EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 111 12221122334568888774 544 444567899999987521 12222 2334 7889999
Q ss_pred CCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccc---cccEEEEEEecCCCEEEEEeCCCcEE
Q 035621 232 PTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRH---DGVVVSVMMMNEGKNLVSAAEDGSVY 298 (387)
Q Consensus 232 ~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~ 298 (387)
++|+++++... .+.|..+|... .....+.... ...++.+++ .+++++++....+.|.
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---------~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---------NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---------CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCC---------CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence 99986666544 45677776542 1111111111 234566666 4666666666778899
Q ss_pred EEECCCc
Q 035621 299 IWEIEKR 305 (387)
Q Consensus 299 iwd~~~~ 305 (387)
.+++...
T Consensus 308 ~~~~~~~ 314 (322)
T 2fp8_A 308 ILVYDKK 314 (322)
T ss_dssp EEEC---
T ss_pred EEecccc
Confidence 9987643
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.83 E-value=1.3e-05 Score=67.45 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=135.4
Q ss_pred ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCc
Q 035621 79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQ 156 (387)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 156 (387)
.+........++|+++++++++-..++.|..||... +....+. ....+..+++.++++++++..... .|..+|..
T Consensus 27 ~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~- 103 (306)
T 2p4o_A 27 SFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS- 103 (306)
T ss_dssp EECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-
T ss_pred eCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-
Confidence 343345677899999998777766788999999765 4333333 235688999999999665554332 35556641
Q ss_pred ccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEe----------cCCc
Q 035621 157 LVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVT----------FPCA 224 (387)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----------~~~~ 224 (387)
......... ........++..+. +..+++-..++.|..+|..+++. +.... .-..
T Consensus 104 -----------~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 104 -----------DGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp -----------TSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred -----------CCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 222111111 11122234443332 34455554688999999876532 21111 0123
Q ss_pred eeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621 225 IMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 303 (387)
.+.+ +|+++.|+++. ..+.|+.+++...... . ...... .......++++++|+++++....+.|.+++..
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~--~-~~~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP--G-EPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB--C-CCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC--C-ccEEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 4455 78887776664 4789999998752110 0 011111 11345678999999988877778899999975
Q ss_pred CccEEE--EeecccCCCceeEEEEecCCCceeeEEEecC
Q 035621 304 KRQVVM--VLKNELAGSISEMVIATGIGGSRGCGVVKTG 340 (387)
Q Consensus 304 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 340 (387)
++... .+... ...+++++|....++...+++...+
T Consensus 242 -G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 -RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 66533 23322 1357888886322344445555443
No 268
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.75 E-value=5.3e-06 Score=69.51 Aligned_cols=202 Identities=17% Similarity=0.242 Sum_probs=130.2
Q ss_pred CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC----CC---EEEEEeC---CCcEEEEeCCcccccCCC
Q 035621 94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD----GS---LLISGGD---DGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~ 163 (387)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ ++ ++++... +++|.+|++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp------- 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG------- 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT-------
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC-------
Confidence 3445555556778999999 8888888863 56777776653 22 2333333 57899997721
Q ss_pred CCCCCccceEeeec------cC-CCeEEEEE--eeCCCCceEEEEeCCCcEEEEeCC-------CCcEEEEEecCCceeE
Q 035621 164 DKNPDDLMLQKFVA------HN-DSVTAITC--CIGSFNSIIISCSMDCTCKFWRLL-------NGTHLSTVTFPCAIMG 227 (387)
Q Consensus 164 ~~~~~~~~~~~~~~------~~-~~i~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~v~~ 227 (387)
....+..+.. .. ..+..+++ ++.....+++....+|.+..|++. +.+.+++|.....+..
T Consensus 109 ----~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Eg 184 (355)
T 3amr_A 109 ----KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEG 184 (355)
T ss_dssp ----TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEE
T ss_pred ----CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcce
Confidence 1112222211 11 45566777 443322368888889999999983 3467788888899999
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEE--ecCCC-EEEEEe-CCCcEEEEEC
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMM--MNEGK-NLVSAA-EDGSVYIWEI 302 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--s~~~~-~l~s~~-~dg~i~iwd~ 302 (387)
+...+....|+++-.+..|..++....... ....+.....++ ...+..|++ .++++ +|++++ .+.+..+||.
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~---~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGS---NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCS---CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCC---CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 999999999999999866666665432210 011222211122 236888887 45555 666555 6779999999
Q ss_pred C-CccEEEEee
Q 035621 303 E-KRQVVMVLK 312 (387)
Q Consensus 303 ~-~~~~~~~~~ 312 (387)
. +.+.+..|.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 7 788888885
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.4e-05 Score=70.61 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=130.7
Q ss_pred ccccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCcc--
Q 035621 2 LHHLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTPL-- 77 (387)
Q Consensus 2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~~-- 77 (387)
|+++| ++..|..+...+.|+.+|+.++....... .......+++++++. +...-...+.....+...+. .+...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~ 219 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVI 219 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSE
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeee
Confidence 46787 34445554444889999987666544333 445578899998654 22211000011123433443 33222
Q ss_pred cccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 035621 78 HNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISG-GDDGVIATVPI 154 (387)
Q Consensus 78 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~ 154 (387)
..+........++++| ++.++++-..++.|..++...+....... ........++|+|++++|+.+ ...+.|..++.
T Consensus 220 ~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 220 TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 2222234567889999 67666666677899999987665422222 122457899999999955544 56778888876
Q ss_pred CcccccCCCCCCCCccceEeeec----------------cCCCeEEEEEee------CCCCceEEEEeCCCcEEEEeCCC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVA----------------HNDSVTAITCCI------GSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~------~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
...... ......+.+ ...+-..++..+ +.++.++++-...+.|+.++ .+
T Consensus 300 d~~~~~--------~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 300 DWKTKR--------LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ 370 (430)
T ss_dssp ETTTTE--------ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred Cccccc--------ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence 311000 000001110 111111344432 23346666666678888888 45
Q ss_pred CcEEEEEec---------C---------CceeEEEeCCC-CCeEEEEccCCcEEEEec
Q 035621 213 GTHLSTVTF---------P---------CAIMGLALDPT-ETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 213 ~~~~~~~~~---------~---------~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~ 251 (387)
+........ . .....++++|+ +.++++-..+..|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 644333322 1 14788999985 444444455677777665
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.73 E-value=2.6e-06 Score=80.99 Aligned_cols=235 Identities=15% Similarity=0.066 Sum_probs=125.1
Q ss_pred cccc-CCCcEEEeeCC-----CCcEEEEeCCCC-ceeEe-ccCCCCCceeEEEcCcccee-eeccccCCCCCeEEEEEcc
Q 035621 2 LHHL-PCNEVILTSSP-----EGPITAYNPSSG-AILAH-FSGSRSPRRGLTFAGKPFIA-ASHISPTTGSGSVHLYNLW 72 (387)
Q Consensus 2 l~~s-~~~~~l~~~~~-----dg~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~d~~v~vw~~~ 72 (387)
.+|| |||++||.+.. ...|+++|+.++ +.+.. +. .....++|+|++..+ ....-.......|.++++.
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 3689 99998885432 235999999988 63221 11 124578899975322 2211001111368888887
Q ss_pred CCCcc--ccc--CCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCC--ce-eEEc-cCCCCCeEEEEEcCCCCEEE
Q 035621 73 SSTPL--HNI--PVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKG--DI-LRSF-SAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 73 ~~~~~--~~~--~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~ 141 (387)
++... ..+ ........+.|+|||++|+.... ...|.++|+.++ +. +..+ ........++.|+..+.+++
T Consensus 256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~ 335 (751)
T 2xe4_A 256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVI 335 (751)
T ss_dssp SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEE
T ss_pred CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEE
Confidence 66422 222 22234567899999999887653 347888998775 23 1333 33445556666554444445
Q ss_pred EEeCC--C--cEEEEeCCcccccCCCCCCCCccceEe-eeccCC--CeEEEEEeeCCCCceEEEEeCCCc--EEEEeC--
Q 035621 142 SGGDD--G--VIATVPIFQLVDEHTDDKNPDDLMLQK-FVAHND--SVTAITCCIGSFNSIIISCSMDCT--CKFWRL-- 210 (387)
Q Consensus 142 ~~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~--i~iwd~-- 210 (387)
....+ + .|..+|+.. ...... +..+.. .+..+. +.+ +.++++...++. |.++|+
T Consensus 336 ~t~~~~a~~~~L~~~d~~~------------~~~~~~~li~~~~~~~l~~~~--~~~-~~lv~~~~~~g~~~l~~~dl~~ 400 (751)
T 2xe4_A 336 LTNEGGAVNHKLLIAPRGQ------------PSDWSHVLVDHSEDVFMESIA--VRS-NYLVVAGRRAGLTRIWTMMADS 400 (751)
T ss_dssp EECTTTCTTCEEEEEETTS------------TTCCCCEEECCCSSEEEEEEE--ECS-SEEEEEEEETTEEEEEEEECCT
T ss_pred EeCCCCCCCcEEEEEcCCC------------cccceeeEECCCCCcEEEEEE--EEC-CEEEEEEEeCCEEEEEEEeccc
Confidence 54443 2 455566521 011122 223333 233444 343 466777777775 555665
Q ss_pred -----CCCcEEEEEecCCc--eeEEEe----CCCCCeEE-EEcc---CCcEEEEecccc
Q 035621 211 -----LNGTHLSTVTFPCA--IMGLAL----DPTETDFF-AAGS---DGLIYKGLLKYQ 254 (387)
Q Consensus 211 -----~~~~~~~~~~~~~~--v~~~~~----~~~~~~l~-~~~~---dg~i~i~d~~~~ 254 (387)
..++....+..+.. +..+.+ ++++..++ +.+. -..++.+|+.++
T Consensus 401 ~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 401 QDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp TTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred ccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 33331445544433 334433 44665443 3333 246777777653
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=4.9e-05 Score=64.10 Aligned_cols=238 Identities=11% Similarity=-0.014 Sum_probs=142.5
Q ss_pred CCeEEEEEccCCCcc--cccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCC
Q 035621 63 SGSVHLYNLWSSTPL--HNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 63 d~~v~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 138 (387)
...|+..++...... ..+.....+..++|.+.+..|+.. ...+.|..+++..+.. ...+.........+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 567888888765311 112222456788999865555544 4567899999876532 122222234567899987544
Q ss_pred -EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCcEE
Q 035621 139 -LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGTHL 216 (387)
Q Consensus 139 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~ 216 (387)
++++-...+.|.++++. .................+++.|.. +.++.+-. ..+.|...++......
T Consensus 92 ~ly~~d~~~~~I~~~~~d------------G~~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLD------------GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEEEEETTTTEEEEEETT------------SCSCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCE
T ss_pred eEEEEECCCCEEEEEECC------------CCcEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeE
Confidence 44555567789998872 111111122334456789998864 34444432 3578888887643322
Q ss_pred EEEe-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621 217 STVT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED 294 (387)
Q Consensus 217 ~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 294 (387)
..+. .-...+.++++|++..|+.+. ..+.|..+++....+. .+..........+++.. +.++.+-...
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---------~~~~~~~~~P~glav~~-~~lywtd~~~ 228 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---------AVVKGSLPHPFALTLFE-DILYWTDWST 228 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------EEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---------EEecCCCCCceEEEEeC-CEEEEEecCC
Confidence 2222 224578999999777766664 4788999988642211 11112334567788763 4555666677
Q ss_pred CcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 295 GSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 295 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
+.|..++..+|+.+..+..... .+.++.+
T Consensus 229 ~~V~~~~~~~G~~~~~i~~~~~-~P~~i~v 257 (318)
T 3sov_A 229 HSILACNKYTGEGLREIHSDIF-SPMDIHA 257 (318)
T ss_dssp TEEEEEETTTCCSCEEEECCCS-SCCCEEE
T ss_pred CeEEEEECCCCCceEEEeCCCC-CCcEEEE
Confidence 8999999988887777664432 4555544
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.71 E-value=8.9e-06 Score=65.65 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=134.6
Q ss_pred eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621 33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAI 110 (387)
Q Consensus 33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~ 110 (387)
.+.+-...+..++++|+.. ..+++...++.|...|.. ++.++.+... .....+++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~---~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSN---TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTT---EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCC---EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 4556666799999998432 111224568889999987 8777776543 568889999988877776667889999
Q ss_pred eCCCCce---eEEcc------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee------
Q 035621 111 SVPKGDI---LRSFS------AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF------ 175 (387)
Q Consensus 111 d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------ 175 (387)
++..... +.... ..+...-.++|+|.++.|+++.+.....+|.+.... ....+...
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~---------~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL---------SSNELHISKDKALQ 167 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT---------CSSCCEEEECHHHH
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc---------cCCceeeecchhhc
Confidence 8765432 12221 234567899999999888887776666666653110 00011111
Q ss_pred -eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----------CceeEEEeCCCCCeEEEEccCC
Q 035621 176 -VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP----------CAIMGLALDPTETDFFAAGSDG 244 (387)
Q Consensus 176 -~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg 244 (387)
..+...+.++++.|.. +.+++....++.|.++|.. ++.+..+... .....++|.++|+ |++.+..+
T Consensus 168 ~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n 244 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN 244 (255)
T ss_dssp HTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred cccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc
Confidence 1123457889999875 6788888888999999965 6666666633 2678999999997 44556666
Q ss_pred cEEEEe
Q 035621 245 LIYKGL 250 (387)
Q Consensus 245 ~i~i~d 250 (387)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666664
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=0.00034 Score=67.01 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=156.1
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEeccC-------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFSG-------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
++|++.+ |+.+ -+.+||..+++....... ....|.++...+++.+-. ++..+-|.+++..++....
T Consensus 220 ~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~~Gl~~~~~~~~~~~~ 292 (781)
T 3v9f_A 220 TNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-----ATELNGIMILDLQQNQFLL 292 (781)
T ss_dssp TTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-----EESSSCEEEEETTCC----
T ss_pred CCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-----EeCCCCeEEECCCCCeeee
Confidence 4455444 4444 588899876654322111 234588888877554432 3444568888886654322
Q ss_pred ccC---------------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---------CCCCCeEEEEEc
Q 035621 79 NIP---------------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---------AHDKPVSCLKIS 134 (387)
Q Consensus 79 ~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~~ 134 (387)
... ....|.++...++|. |-.|+.++-|..++..+........ .....|.++...
T Consensus 293 ~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 371 (781)
T 3v9f_A 293 PEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD 371 (781)
T ss_dssp -----CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC
T ss_pred eeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc
Confidence 111 234688888888886 5556666669999987654332211 123568999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621 135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214 (387)
Q Consensus 135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 214 (387)
+++. |..|+.++-|..||.....-... ..........|.++...++ +. |..|+.++-|..+|..+++
T Consensus 372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~---------~~~~~~~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 372 GQGK-LWIGTDGGGINVFENGKRVAIYN---------KENRELLSNSVLCSLKDSE--GN-LWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp TTSC-EEEEEBSSCEEEEETTEEEEECC--------------CCCSBEEEEEECTT--SC-EEEEETTEEEEEECSSSCE
T ss_pred CCCC-EEEEeCCCcEEEEECCCCeEEEc---------cCCCCCCCcceEEEEECCC--CC-EEEEeccCCEEEEcCCCCc
Confidence 8776 55666666788888732100000 0000123356777765443 34 5556766779999987765
Q ss_pred EEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621 215 HLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 215 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 290 (387)
. ..+. ....|.++...+++...+ |+. +-+..++..+........... .......|.++...++|.+.+.
T Consensus 439 ~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 439 F-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSN----SQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp E-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTT----SSCSCSCEEEEEECTTCCEEEE
T ss_pred E-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcc----cccccceeEEEEEcCCCCEEEE
Confidence 3 3333 235788998888876444 444 568888876533211110000 0011467899999988875554
Q ss_pred EeCCCcEEEEECCCccEE
Q 035621 291 AAEDGSVYIWEIEKRQVV 308 (387)
Q Consensus 291 ~~~dg~i~iwd~~~~~~~ 308 (387)
+.++-|..||..+++..
T Consensus 512 -t~~~Gl~~~~~~~~~~~ 528 (781)
T 3v9f_A 512 -TFGGGVGIYTPDMQLVR 528 (781)
T ss_dssp -ESSSCEEEECTTCCEEE
T ss_pred -EcCCCEEEEeCCCCeEE
Confidence 44444888998776543
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.65 E-value=0.00021 Score=67.75 Aligned_cols=239 Identities=13% Similarity=0.008 Sum_probs=142.5
Q ss_pred CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCC
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~ 137 (387)
...|+..++........+.....+..++|.+.+..|+.. ...+.|+.+++... .....+.........|++.+.+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 455677777655554445555678899999865555544 45678888888653 2233333344567889999877
Q ss_pred CEEE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCc
Q 035621 138 SLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGT 214 (387)
Q Consensus 138 ~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~ 214 (387)
..|+ +-...+.|.+.++. +.....+ .........|++.|.. +.++++-... +.|...++....
T Consensus 483 ~~LY~tD~~~~~I~v~~ld-------------G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTK-------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp TEEEEEETTTTEEEEEETT-------------SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCC
T ss_pred CcEEEEecCCCeEEEEeCC-------------CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCc
Confidence 5554 44567889998882 2222222 2334457889998864 3444444333 788888886544
Q ss_pred EEEEEec-CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 215 HLSTVTF-PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 215 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
....+.. -.....|++++.+..|+.+. ..+.|..+++....+.. +... ...-....+|++.. +.++++-.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~------v~~~-~~~l~~P~glav~~-~~lYwtD~ 620 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILED-EKRLAHPFSLAVFE-DKVFWTDI 620 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------EEEC-TTTTSSEEEEEEET-TEEEEEET
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE------EecC-CCccCCCCEEEEeC-CEEEEEEC
Confidence 4333332 25788999998877777764 46778888876532211 1110 01123455677643 34555555
Q ss_pred CCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621 293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 324 (387)
..+.|...+..+|+.+..+..... .+.+|.+
T Consensus 621 ~~~~I~~~dk~tG~~~~~l~~~l~-~P~~i~v 651 (791)
T 3m0c_C 621 INEAIFSANRLTGSDVNLLAENLL-SPEDMVL 651 (791)
T ss_dssp TTTEEEEEETTTCCCCEEEECSCS-CCCCEEE
T ss_pred CCCEEEEEeCCCCcceEEeecCCC-CceeEee
Confidence 678898898888877666654332 3444433
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.8e-05 Score=71.45 Aligned_cols=269 Identities=12% Similarity=0.024 Sum_probs=155.3
Q ss_pred CCCcEEEeeCCCCcEEEEeCCCCceeEecc--------------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621 6 PCNEVILTSSPEGPITAYNPSSGAILAHFS--------------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
++|. |..|+..+-|.++|..++....... .....|.++...+++.+-. |+.++-|..++.
T Consensus 267 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-----gt~~~Gl~~~~~ 340 (781)
T 3v9f_A 267 KDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-----GTWGGGINFISN 340 (781)
T ss_dssp TTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-----EEBSSCEEEECS
T ss_pred CCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-----EecCCeEEEeCC
Confidence 3444 4455554568889987665322111 1234588888877544322 455677888887
Q ss_pred cCCCccccc-------C---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCC
Q 035621 72 WSSTPLHNI-------P---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGS 138 (387)
Q Consensus 72 ~~~~~~~~~-------~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 138 (387)
.++...... . ....|.++...++|. |..|+.++-|..||..+++..... ......|.++...+++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 419 (781)
T 3v9f_A 341 APPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN 419 (781)
T ss_dssp SCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC
T ss_pred CCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC
Confidence 654332211 0 224688888888776 445665566999997654332211 12346789999888776
Q ss_pred EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621 139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215 (387)
Q Consensus 139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 215 (387)
+ ..|+.++-+..+|... . ....+. .....|.++...++ +. |..|+. +-|..||..+++.
T Consensus 420 l-Wigt~~~Gl~~~~~~~------------~-~~~~~~~~~~~~~~v~~i~~d~~--g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 420 L-WFGTYLGNISYYNTRL------------K-KFQIIELEKNELLDVRVFYEDKN--KK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp E-EEEETTEEEEEECSSS------------C-EEEECCSTTTCCCCEEEEEECTT--SE-EEEEET-TEEEEEESSSSSC
T ss_pred E-EEEeccCCEEEEcCCC------------C-cEEEeccCCCCCCeEEEEEECCC--CC-EEEEEC-CceEEEeCCCCeE
Confidence 4 4466666788887621 1 112221 13356777765444 34 444555 5588999887654
Q ss_pred EEEEec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621 216 LSTVTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV 289 (387)
Q Consensus 216 ~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 289 (387)
...... ...|.++...++|...+ |+.++-+..++............ ..-....|.++...++|.+.+
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~------~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQY------EGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTT------TTCSCSCEEEEEECTTSCEEE
T ss_pred EecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCC------CCCCCCeeEEEEECCCCCEEE
Confidence 433221 35788999988886554 45444477787765321111100 011245689999988887655
Q ss_pred EEeCCCcEEEEECCCccE
Q 035621 290 SAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 290 s~~~dg~i~iwd~~~~~~ 307 (387)
+. .+|.|..||..+++.
T Consensus 555 ~T-~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 555 AT-GEGLVCFPSARNFDY 571 (781)
T ss_dssp EE-TTEEEEESCTTTCCC
T ss_pred EE-CCCceEEECCCCCcE
Confidence 44 466558898877654
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.60 E-value=1.4e-06 Score=81.93 Aligned_cols=242 Identities=13% Similarity=0.022 Sum_probs=141.0
Q ss_pred CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC----CceeEEccCCCCCeEEEEEcCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK----GDILRSFSAHDKPVSCLKISPD 136 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~ 136 (387)
..+.|+..++...+....+.....+..++|.+.+..|+... ..+.|+.+++.. ......+.........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 34578888887766655555556788999999777777664 457899999865 2222222222234567888864
Q ss_pred C-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCC
Q 035621 137 G-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNG 213 (387)
Q Consensus 137 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~ 213 (387)
+ +++++-...+.|.++++. +.....+ .........+++.|.. +.++++-... +.|..+++...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~d-------------g~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTK-------------GVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSS-------------SCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSC
T ss_pred CCcEEEEeccCCeEEEEecC-------------CCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCC
Confidence 4 444444566789888872 1122222 2222345677777764 3444444333 67888877533
Q ss_pred cEEEEEe-cCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 214 THLSTVT-FPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 214 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
.....+. .-...+.|+++|++..|+.+ ...+.|..+++....+.. +.. ..........|++..+ .++++.
T Consensus 530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~------~~~-~~~~~~~P~glavd~~-~lywtd 601 (699)
T 1n7d_A 530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILE-DEKRLAHPFSLAVFED-KVFWTD 601 (699)
T ss_dssp CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE------ECC-CSSSCSSCCCCEEETT-EEEEEC
T ss_pred CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE------EEe-cCCcCCCceEeEEECC-EEEEEe
Confidence 2222111 22456789999987666655 457789999886422111 110 0011223445666554 455566
Q ss_pred eCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621 292 AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT 326 (387)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 326 (387)
...+.|..++..+++.+..+..... .+++|.+..
T Consensus 602 ~~~~~V~~~d~~~G~~~~~i~~~~~-~P~~i~v~~ 635 (699)
T 1n7d_A 602 IINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFH 635 (699)
T ss_dssp STTTCEEEEETTTEEEEECCCTTCS-SCCCCCBCS
T ss_pred CCCCeEEEEEccCCCceEEeecCCC-CCcEEEEeC
Confidence 6778999999999998888765432 455554443
No 277
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.56 E-value=0.00045 Score=63.99 Aligned_cols=227 Identities=9% Similarity=-0.032 Sum_probs=142.9
Q ss_pred CCCeEEEEEccCCCcccccCC--CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621 62 GSGSVHLYNLWSSTPLHNIPV--PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138 (387)
Q Consensus 62 ~d~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (387)
....|+..+++.......+.. -..+..++|.+.+..|+.+ ..++.|..+++........+.........+++.+.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456788888876554333332 2468899999976666655 4568899999866544444433334578899987655
Q ss_pred EE-EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE
Q 035621 139 LL-ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH 215 (387)
Q Consensus 139 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~ 215 (387)
.| ++-...+.|.+.++.. .....+ ...-.....|++.|.. +.++.+- +..+.|...++.....
T Consensus 93 ~LY~tD~~~~~I~v~~~dG-------------~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDG-------------QHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp EEEEEETTTTEEEEEETTS-------------TTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEEEEECCCCEEEEEecCC-------------CcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCCCCce
Confidence 55 4444567888888721 111222 1333456789998864 3444443 2256788888765544
Q ss_pred EEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621 216 LSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED 294 (387)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 294 (387)
...+..-.....++++++++.|+.+. ..+.|..+++..... .+. .........+++.. +..+++-...
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~---~~~l~~P~glav~~-~~ly~tD~~~ 227 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVI---ADDLPHPFGLTQYQ-DYIYWTDWSR 227 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE---EECCSCEEEEEEET-TEEEEEETTT
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEe---eccCCCceEEEEEC-CEEEEecCCC
Confidence 33344446788999999877777665 477899988865321 111 12233456788865 4555555567
Q ss_pred CcEEEEECCCccEEEEeec
Q 035621 295 GSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 295 g~i~iwd~~~~~~~~~~~~ 313 (387)
+.|...|..+++....+..
T Consensus 228 ~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp TEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEECCCCCceEEEec
Confidence 8899999877765555543
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=0.00015 Score=69.07 Aligned_cols=198 Identities=9% Similarity=-0.002 Sum_probs=109.7
Q ss_pred CceeEEEc-Cccceeeeccc-cCCCCCeEEEEEccCC-CcccccCCCCCeeeEEeccCCCEEEEecCC-----CcEEEEe
Q 035621 40 PRRGLTFA-GKPFIAASHIS-PTTGSGSVHLYNLWSS-TPLHNIPVPEPVAPLATTADGSYLFTGGLS-----GNVYAIS 111 (387)
Q Consensus 40 ~v~~~~~~-~~~~~~~~~~~-~~~~d~~v~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d 111 (387)
.+....|+ |++..++-..- .|+....|+++|+.++ +.+.. ........++|+|||+.|+....+ ..|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57788999 98765443222 2333457999999988 63211 111224578999999888877654 2688888
Q ss_pred CCCCce--eEEcc-CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccc-eEee-eccCCCeE
Q 035621 112 VPKGDI--LRSFS-AHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLM-LQKF-VAHNDSVT 183 (387)
Q Consensus 112 ~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~ 183 (387)
+.+++. ...+. ........+.|+|||++|+..+. ...|.++|+... .... +..+ ........
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~----------~~~~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG----------NAHNTLEIVRPREKGVRY 323 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC----------TTCCCEEESSCCCTTCCE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC----------CCCceeEEeecCCCCceE
Confidence 877642 22222 22344678899999998876653 345777887321 0111 0222 22334445
Q ss_pred EEEEeeCCCCceEEEEeCC----CcEEEEeCCCC-cEEE-EEecCC--ceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621 184 AITCCIGSFNSIIISCSMD----CTCKFWRLLNG-THLS-TVTFPC--AIMGLALDPTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 184 ~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 251 (387)
++.|+.. +.+++....+ ..|..+|+.++ .... .+.+.. .+..+.+. .+..+++...++...+|-+
T Consensus 324 s~~~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 324 DVQMHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EEEEETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred EEeeeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 5544332 2444444433 36777777653 2222 233333 34555554 2334455556776554433
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.55 E-value=0.00018 Score=58.06 Aligned_cols=200 Identities=13% Similarity=0.161 Sum_probs=123.0
Q ss_pred CCeeeEEeccCCCEEEE-ecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 84 EPVAPLATTADGSYLFT-GGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
..+..+++.|+++.|++ ...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-- 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-- 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC--
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe--
Confidence 56999999998776654 6677899999987 888777642 235678899999888777766778888888732110
Q ss_pred CCCCCCCccceEee------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCcEEEEEe--------cCCc
Q 035621 162 TDDKNPDDLMLQKF------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGTHLSTVT--------FPCA 224 (387)
Q Consensus 162 ~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~--------~~~~ 224 (387)
...+... ...+.....+++.|.. +.|+++.......+|.+. ....+..+. .-..
T Consensus 104 -------i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 104 -------VKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp -------EEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred -------eeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 0011111 1234557899999885 445555544444455443 111222221 1235
Q ss_pred eeEEEeCCCCCeEEE-EccCCcEEEEeccccccccccccceeEeecccc------cccEEEEEEecCCCEEEEEeCCCcE
Q 035621 225 IMGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH------DGVVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 225 v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
+..++++|....+++ ...+..+..+|...... ....+..+. -...-.|+|.++|+++++ ++-+.+
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~ 246 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRF 246 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-------EEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceE
Confidence 789999997655544 55577888888765211 111111111 135689999999986665 666767
Q ss_pred EEEECC
Q 035621 298 YIWEIE 303 (387)
Q Consensus 298 ~iwd~~ 303 (387)
+.|.-.
T Consensus 247 y~f~~~ 252 (255)
T 3qqz_A 247 YRFTPQ 252 (255)
T ss_dssp EEEEC-
T ss_pred EEEEec
Confidence 766543
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.54 E-value=0.00035 Score=60.72 Aligned_cols=223 Identities=9% Similarity=-0.044 Sum_probs=132.7
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCee
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVA 87 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~ 87 (387)
+|+.+. ...|+..++........+. ....+..++|++ +..+... -...+.|..++.........+. ......
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~----D~~~~~I~r~~~~g~~~~~~~~~~~~~p~ 162 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWS----DVTLDRILRANLNGSNVEEVVSTGLESPG 162 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEE----eCCCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence 343333 3578888887655444443 334478899986 3322222 3456789999987654333332 224567
Q ss_pred eEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCcccccCCCC
Q 035621 88 PLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-D-GVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 88 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~ 164 (387)
.+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------- 233 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------- 233 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------
Confidence 889998655554 4455678999998655433334434456799999997666665543 3 677777762
Q ss_pred CCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 165 KNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
+.....+ ...-.....|+++|.. +.++++-+..+.|..+|+........+. .......+++ ..+..+++-..
T Consensus 234 ----G~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~ 307 (386)
T 3v65_B 234 ----GSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH 307 (386)
T ss_dssp ----SCSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred ----CCCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCC
Confidence 1122222 2223456789998764 4566666667889999986543332332 2345667777 33444455555
Q ss_pred CCcEEEEeccc
Q 035621 243 DGLIYKGLLKY 253 (387)
Q Consensus 243 dg~i~i~d~~~ 253 (387)
.+.|..++..+
T Consensus 308 ~~~V~~~~~~~ 318 (386)
T 3v65_B 308 TKSINSANKFT 318 (386)
T ss_dssp TTEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 67777776433
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.53 E-value=8.2e-05 Score=62.40 Aligned_cols=203 Identities=10% Similarity=0.183 Sum_probs=127.6
Q ss_pred CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce----eeeccccCCC--CCeEEEEEcc-CCCcccc
Q 035621 7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI----AASHISPTTG--SGSVHLYNLW-SSTPLHN 79 (387)
Q Consensus 7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~--d~~v~vw~~~-~~~~~~~ 79 (387)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+..+ ..-.+++.-. +++|.+|++. ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445555556678999999 8999988864 55777777663210 0011223444 6899999774 2223444
Q ss_pred cC-------CC-CCeeeEEe--ccC-CC-EEEEecCCCcEEEEeCC-------CCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621 80 IP-------VP-EPVAPLAT--TAD-GS-YLFTGGLSGNVYAISVP-------KGDILRSFSAHDKPVSCLKISPDGSLL 140 (387)
Q Consensus 80 ~~-------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l 140 (387)
+. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. ...+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 42 11 56777888 664 43 68888889999999882 3355677764 4578889999988899
Q ss_pred EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-c-cCCCeEEEEEeeCCCCc-eEEEEe-CCCcEEEEeCC-CCcE
Q 035621 141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-A-HNDSVTAITCCIGSFNS-IIISCS-MDCTCKFWRLL-NGTH 215 (387)
Q Consensus 141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~-~l~s~~-~d~~i~iwd~~-~~~~ 215 (387)
+.+-++..|..++.... .......+..+. + -...+..|++-+..+++ +|++++ .+.+..+||.. +.+.
T Consensus 195 yv~eEd~GIw~~da~p~-------~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPD-------GGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp EEEETTTEEEEEECSTT-------SCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred EEecccceEEEEeCCcC-------CCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 99999876655554110 001122333321 1 22468888886544333 444444 67899999996 6677
Q ss_pred EEEEe
Q 035621 216 LSTVT 220 (387)
Q Consensus 216 ~~~~~ 220 (387)
+..|.
T Consensus 268 vg~f~ 272 (355)
T 3amr_A 268 VADFR 272 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=4.6e-05 Score=67.28 Aligned_cols=241 Identities=9% Similarity=-0.032 Sum_probs=133.2
Q ss_pred CceeEEEcCc---cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC-----cEEEEe
Q 035621 40 PRRGLTFAGK---PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG-----NVYAIS 111 (387)
Q Consensus 40 ~v~~~~~~~~---~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d 111 (387)
....++++|+ +.+... ...+.|+.++..++..............++++++|+ |+++...+ .+..++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-----D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-----GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-----CBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEE-----eCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 3567888873 322221 112789999987776655555556789999999999 44444321 233333
Q ss_pred CCCCce-eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-ec-cCCCeEEEEE
Q 035621 112 VPKGDI-LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VA-HNDSVTAITC 187 (387)
Q Consensus 112 ~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~ 187 (387)
...+.. ...+. .......++++| ++.+.++-..++.|+.+|.. .......+ .. ....-..+++
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~------------~g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA------------TGTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT------------TCCEEEEEEECSCCSSCEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC------------CCeEEEEEeccCCCCCcccEEE
Confidence 322211 01121 233456789999 66666666677888888872 12221111 11 1122346888
Q ss_pred eeCCCCc-eEEEEeCCCcEEEEeCC--CCcE--EEEEec----------------CCceeEEEe---------CCCCCeE
Q 035621 188 CIGSFNS-IIISCSMDCTCKFWRLL--NGTH--LSTVTF----------------PCAIMGLAL---------DPTETDF 237 (387)
Q Consensus 188 ~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~--~~~~~~----------------~~~v~~~~~---------~~~~~~l 237 (387)
+|++ + ++++-...+.|+.+++. ++.. ...+.. -.....+++ .+++.++
T Consensus 281 dpdG--~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 281 HPTG--DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp CTTS--SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred eCCC--CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 8875 5 55555667889998765 2321 112211 123667888 6777777
Q ss_pred EEEccCCcEEEEecccccccccccccee-------Ee-e-cccccccEEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q 035621 238 FAAGSDGLIYKGLLKYQSRQQMHKGQEL-------VT-L-ANRHDGVVVSVMMM-NEGKNLVSAAEDGSVYIWEIE 303 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~-~-~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~ 303 (387)
++-...+.|+.++.. +...... +... .. . ....-.....++++ ++|.++++=...+.|+.++++
T Consensus 359 vaD~~n~~I~~~~~~-G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 359 FCDRDSHTVRVLTPE-GRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEECTT-SEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEECCC-CCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 766778889888742 2111000 0000 00 0 00112347889999 566666665566778877754
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.46 E-value=0.00057 Score=60.33 Aligned_cols=238 Identities=7% Similarity=-0.034 Sum_probs=129.2
Q ss_pred ccccCC---CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCe-EEEEEccCCCc-
Q 035621 2 LHHLPC---NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS-VHLYNLWSSTP- 76 (387)
Q Consensus 2 l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~-v~vw~~~~~~~- 76 (387)
|+|+|+ ++++++ ...+.|+.+|+.+++...... .......+++++++.+...... ...+.. +...+...+..
T Consensus 144 vavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~-~~~~~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQ-SSDTNTGIYLFTRASGFTE 220 (433)
T ss_dssp EEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECC-SCTTSEEEEEECGGGTTCC
T ss_pred EEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCC-CCcccceEEEEECCCCeec
Confidence 467774 554444 333889999988777655443 4445789999986543322100 001112 33333221111
Q ss_pred ccccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEc-c-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEE
Q 035621 77 LHNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSF-S-AHDKPVSCLKISPDGSLLISG-GDDGVIATV 152 (387)
Q Consensus 77 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw 152 (387)
...+..-.....+++.| +|.+.++-..++.|+.+|..++.....+ . +....-..++|+|++++|+.+ ...+.|+.+
T Consensus 221 ~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 221 RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRV 300 (433)
T ss_dssp EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEE
Confidence 01111224567789999 6665555556788999998877652222 2 112233579999999955554 456788887
Q ss_pred eCCcccccCCCCCCCCccceEeeec---------------cCCCeEEEEEee-------CCCCceEEEEeCCCcEEEEeC
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVA---------------HNDSVTAITCCI-------GSFNSIIISCSMDCTCKFWRL 210 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~-------~~~~~~l~s~~~d~~i~iwd~ 210 (387)
+...... .......+.+ .-.....+++.+ +.+++++++-...+.|+.++.
T Consensus 301 ~~d~~~~--------~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 301 DYNRETG--------KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EBCTTTC--------CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred eCCCCCc--------ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 7631100 0000001111 112345677731 233567777667788999984
Q ss_pred CCCcEEEEEecC------------------CceeEEEeC-CCCCeEEEEccCCcEEEEec
Q 035621 211 LNGTHLSTVTFP------------------CAIMGLALD-PTETDFFAAGSDGLIYKGLL 251 (387)
Q Consensus 211 ~~~~~~~~~~~~------------------~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~ 251 (387)
++......... .....++++ +++.++++-..++.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 55433322110 136778888 45555554455677777665
No 284
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.45 E-value=0.00037 Score=57.45 Aligned_cols=236 Identities=12% Similarity=0.131 Sum_probs=146.4
Q ss_pred cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccCC-
Q 035621 5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIPV- 82 (387)
Q Consensus 5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~~- 82 (387)
+|..+.+|.-. ...+.|+|+++.+.+..+.- ..+|.--.|-....+..- .+..|.-|+++.. .+.+.+..
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lV------T~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV------TDNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEE------ESSEEEEEESSTTCCCEEEEECC
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEE------cCCcEEEEcccCCCCCceeeecc
Confidence 67778787765 57899999999998888764 446777777654433321 4678999999653 45444442
Q ss_pred ----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC---CCEEEEEeC---
Q 035621 83 ----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD---GSLLISGGD--- 145 (387)
Q Consensus 83 ----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--- 145 (387)
...|..-..+++.++++..+ -.|.+.+|..+. +..+.+++|.+....+.+..+ .++++.+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 24577777788888877554 236789999754 445667777655544433221 113333332
Q ss_pred CCcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-F 221 (387)
Q Consensus 146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 221 (387)
.+.+.+-++....... ..-..+.+..+.. ..+---++..++.. ..++.-+.-|.|++||++++.++..-+ .
T Consensus 226 g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~~DFPVamqvs~ky--gviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp EEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CcEEEEEEcCCCCCCC---CCcccccceeeCCccccCCceEEEEecccC--CEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 2578888884321000 0011111111111 12334456666654 678888899999999999999998877 4
Q ss_pred CCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
...|...+.+....-++.....|.|.-..++..
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 556655555555555666667777777666653
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.43 E-value=0.00057 Score=57.93 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=133.9
Q ss_pred cccCCCcEEEeeCCCCcEEEEeCCCCceeEec----cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHF----SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
.|.+++..+++| ..|.|.. ....|+.=... ......+.++.+.++..+. ++..+.|.. ..+.++.-.
T Consensus 42 ~~~~~~~~~~~G-~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~------~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 42 SFIDRHHGWLVG-VNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWI------VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp EESSSSCEEEEE-TTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEE------EEETTEEEE-ESSTTSSCE
T ss_pred EECCCCcEEEEc-CCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecCCeEEE------EECCCeEEE-ECCCCCCce
Confidence 455566666755 4565532 22333221111 1123458888888743332 234454433 223343322
Q ss_pred ccC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621 79 NIP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153 (387)
Q Consensus 79 ~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 153 (387)
... .+..+..+.+.+++..++++ .+|.|..- ...++.-. ........+..+.+.|++.+++.+...+..+-.|
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 222 23457778887777666655 45544322 12333222 2234456789999999888777665443333333
Q ss_pred CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-----CceeEE
Q 035621 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-----CAIMGL 228 (387)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~ 228 (387)
-.. .....+. ......+..+.+.++ +.+ +..+.+|.+++.+...++.-..+..+ ..+..+
T Consensus 191 ~gG----------~tW~~~~--~~~~~~~~~~~~~~~--g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 191 PGQ----------TAWEPHN--RTTSRRLHNMGFTPD--GRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp TTC----------SSCEEEE--CCSSSCEEEEEECTT--SCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred CCC----------CceeECC--CCCCCccceeEECCC--CCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 200 1111111 123456777877665 344 45556788777643323333323222 357889
Q ss_pred EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 301 (387)
++.+++..++++. +|.++ +....+.... ...........+.++.|.+++. ++.++.+|.|.-++
T Consensus 256 ~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~------~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 256 AYRTPNEVWLAGG-AGALL-CSQDGGQTWQ------QDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EESSSSCEEEEES-TTCEE-EESSTTSSCE------ECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EecCCCEEEEEeC-CCeEE-EeCCCCcccE------EcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 9998777666554 66663 3333221111 1000001234567888876554 55666788777665
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00015 Score=63.94 Aligned_cols=155 Identities=7% Similarity=0.016 Sum_probs=98.9
Q ss_pred CeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEeCCccc
Q 035621 85 PVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-G----VIATVPIFQLV 158 (387)
Q Consensus 85 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~ 158 (387)
....++++| ++..|+++...+.|+.+|+..+...... ........++|++++++|+++... + .+..++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-- 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-- 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence 467789998 4566766655588999998776644433 345668999999999966666542 2 233333210
Q ss_pred ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCe
Q 035621 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETD 236 (387)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 236 (387)
.......+. .......+++.|+. +.++++-..++.|..++...+........ ......++|+|++++
T Consensus 215 ---------~~~~~~~l~-~~~~p~giavdp~~-g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 215 ---------GFKVITELT-KGQNCNGAETHPIN-GELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp ---------TSCSEEEEE-ECSSCCCEEECTTT-CCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred ---------ceeeeeeec-cCCCceEEEEeCCC-CEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 011011222 12334567788742 46666766788999999887654333332 245789999999996
Q ss_pred EEEE-ccCCcEEEEeccc
Q 035621 237 FFAA-GSDGLIYKGLLKY 253 (387)
Q Consensus 237 l~~~-~~dg~i~i~d~~~ 253 (387)
|+++ ...+.|+.++...
T Consensus 284 lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 5555 5578899988764
No 287
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00077 Score=57.67 Aligned_cols=215 Identities=9% Similarity=-0.047 Sum_probs=127.0
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCeeeEEeccCC
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVAPLATTADG 95 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~ 95 (387)
..|+..++........+.. ...+..++|++. ..+... -...+.|..++.........+.. ......+++.+.+
T Consensus 53 ~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~----D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~ 127 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWS----DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH 127 (349)
T ss_dssp SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEE----eccCCceEEEecCCCCceEEEeCCCCCccEEEEecCC
Confidence 4688888765544433333 334788999863 322221 34567899999876654333322 2456789999865
Q ss_pred CEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEeCCcccccCCCCCCCCccce
Q 035621 96 SYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DD-GVIATVPIFQLVDEHTDDKNPDDLML 172 (387)
Q Consensus 96 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~ 172 (387)
..|+ +-...+.|.+.++........+.........++++|.+..|+... .. +.|..+++. +...
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-------------G~~~ 194 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-------------GSGR 194 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------------SCSC
T ss_pred CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-------------CCCc
Confidence 5554 445567899999865543333333445679999999666555544 34 678877762 1111
Q ss_pred Eee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEe
Q 035621 173 QKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGL 250 (387)
Q Consensus 173 ~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 250 (387)
..+ ...-.....+++++.. +.+.++-...+.|..+|+........+. .......+++ ..+..+++-...+.|..++
T Consensus 195 ~~~~~~~~~~PnGla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EESCCSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 222 1223456789998764 4566666667889999986543332232 2345566777 2344444444566776666
Q ss_pred cc
Q 035621 251 LK 252 (387)
Q Consensus 251 ~~ 252 (387)
..
T Consensus 273 ~~ 274 (349)
T 3v64_C 273 KF 274 (349)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.35 E-value=0.00087 Score=56.47 Aligned_cols=223 Identities=11% Similarity=-0.023 Sum_probs=132.5
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccC----CCcccccC-CC
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWS----STPLHNIP-VP 83 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~----~~~~~~~~-~~ 83 (387)
+|+.+.. ..|+..|+.+.+....+. ....+.+++|++. ..+... -...+.|..+++.. ......+. .-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~----D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEE----ETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEE----ECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444443 579999998776555444 3445788999873 222221 34578899999875 22222222 22
Q ss_pred CCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCccccc
Q 035621 84 EPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD--GVIATVPIFQLVDE 160 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~ 160 (387)
.....+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+... +.|...++.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d----- 151 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----- 151 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-----
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-----
Confidence 4567899987555554 44567899999986544333333334567899999976666655543 678777762
Q ss_pred CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCe
Q 035621 161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETD 236 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 236 (387)
+.....+ ...-.....+++.++. +.++++-+..+.|..+|+........... ......+++. .+..
T Consensus 152 --------G~~~~~~~~~~~~~P~gla~d~~~-~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~l 221 (316)
T 1ijq_A 152 --------GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKV 221 (316)
T ss_dssp --------SCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEE
T ss_pred --------CCCeEEEEECCCCCceEEEEeccC-CEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEE
Confidence 2222222 1223456789998764 35556666678999999874332222221 2346677774 3444
Q ss_pred EEEEccCCcEEEEeccc
Q 035621 237 FFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~ 253 (387)
+++-...+.|..++..+
T Consensus 222 y~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 222 FWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEEETTTTEEEEEETTT
T ss_pred EEEECCCCeEEEEeCCC
Confidence 55555577788777654
No 289
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.32 E-value=0.0035 Score=62.20 Aligned_cols=218 Identities=10% Similarity=-0.011 Sum_probs=114.4
Q ss_pred CcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCc--cceeeeccccCCC-CCeEEEEEccCCCcccccCCC
Q 035621 8 NEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGK--PFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP 83 (387)
Q Consensus 8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~ 83 (387)
+.+++.++ ++.+.++++.+++....- ..-...|.|+++.+. +...+..++.|.. |++++++++.+.+.+.....+
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 34455553 466777776655322111 113456999998752 1112334445665 999999999876655443332
Q ss_pred --CCeeeEEec--cCCCEEEEecCCCcEEEEeC--CCCceeEE---ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621 84 --EPVAPLATT--ADGSYLFTGGLSGNVYAISV--PKGDILRS---FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 84 --~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~--~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 154 (387)
....++.+. ....+|.+|-.||.+..+.+ .++++... +-+ ..++.-..+...+..-+.+..+....++.-
T Consensus 602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~ 680 (1158)
T 3ei3_A 602 GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSS 680 (1158)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence 233444333 23457889999998765554 45544322 212 345544444444443333333444444432
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEE-EeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEecCCceeEEEeC
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT-CCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTFPCAIMGLALD 231 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~ 231 (387)
... +.-.......+..++ |+.....+-++..+ ++.++|..+.+. -.+++++....+..++++
T Consensus 681 -------------~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~ 745 (1158)
T 3ei3_A 681 -------------NHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQ 745 (1158)
T ss_dssp -------------SSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEE
T ss_pred -------------CCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEc
Confidence 111 111111112333332 32221123344333 456998887543 345666778899999999
Q ss_pred CCCCeEEEEcc
Q 035621 232 PTETDFFAAGS 242 (387)
Q Consensus 232 ~~~~~l~~~~~ 242 (387)
|..+.++++..
T Consensus 746 ~~~~~~~v~~~ 756 (1158)
T 3ei3_A 746 EVSQCFGVLSS 756 (1158)
T ss_dssp GGGTEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 99887776653
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.30 E-value=0.00095 Score=55.04 Aligned_cols=260 Identities=9% Similarity=0.066 Sum_probs=155.6
Q ss_pred CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621 17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS 96 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (387)
+.+|.|.|+.++.....-. -.--+.-.+|...+.+-. ....++++|+++.+.++.+..+++|.--.|-.+..
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp---i~AdsAIMnP~~~ViALr-----ag~~LQiFnletK~klks~~~~e~VvfWkWis~~~ 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEE-----ETTEEEEEETTTTEEEEEEECSSCEEEEEECSSSE
T ss_pred CCEEEEEECCCCCCccccc---cccceeeeCCCccEEEEe-----cCCeEEEechHHhhhhcceecCCccEEEEecCCCe
Confidence 3468888887765432211 112234457766555543 25789999999999999999889988888876654
Q ss_pred EEEEecCCCcEEEEeCCC-CceeEEccCC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCcccccCCCC
Q 035621 97 YLFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVSCLKISPDGSLLISGGD-------DGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 97 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~ 164 (387)
|+..+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+- .|.+.+|..
T Consensus 120 -L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~---------- 187 (365)
T 2xzh_A 120 -VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------- 187 (365)
T ss_dssp -EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET----------
T ss_pred -EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee----------
Confidence 44443 45699999964 3556666544 345777788889997765542 367788877
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeC---CCcEEEEeCCCC---c-----EEEEEec-----CCceeE
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSM---DCTCKFWRLLNG---T-----HLSTVTF-----PCAIMG 227 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~---d~~i~iwd~~~~---~-----~~~~~~~-----~~~v~~ 227 (387)
.....+.+.+|...-..+.+.-+.. ..+++.+.. .++++|.++... . ....+.. ..-..+
T Consensus 188 ---er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVa 264 (365)
T 2xzh_A 188 ---DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 264 (365)
T ss_dssp ---TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEE
T ss_pred ---cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEE
Confidence 3445566667754433332211111 123443333 258999998542 1 1122211 345678
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
+..++.-..++.-+.-|.+++||+.++... ..- +-....|...+-.....=++.-...|.|.--.++....
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~i--------~~n-rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTCI--------YMN-RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEE--------EEE-ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcEE--------EEe-ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 888988899999999999999999984322 111 11233344334333333333334555555555555444
Q ss_pred E
Q 035621 308 V 308 (387)
Q Consensus 308 ~ 308 (387)
+
T Consensus 336 v 336 (365)
T 2xzh_A 336 I 336 (365)
T ss_dssp H
T ss_pred e
Confidence 3
No 291
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.29 E-value=0.0014 Score=56.31 Aligned_cols=237 Identities=12% Similarity=0.126 Sum_probs=149.2
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccCC
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIPV 82 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~~ 82 (387)
.+|..+.+|.-. ...+.|+|+++.+.+..+.- ..+|.--.|-....+..- .+..|+-|+++.. .+.+.+..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~l~lV------T~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV------TDNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTEEEEE------CSSEEEEEESSSSCCCEEEEEC
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCeEEEE------cCCeeEEecccCCCCchhheec
Confidence 367777777765 57899999999998887764 345666677654433321 4678999999643 45544442
Q ss_pred -----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC---CEEEEEeCC-
Q 035621 83 -----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG---SLLISGGDD- 146 (387)
Q Consensus 83 -----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d- 146 (387)
...|..-..+++.++++..+ -.|.+.+|..+.+ ..+.+.+|.+....+....+. +.++.+...
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 24577777888899877543 2367899997544 456677887665555443221 234444332
Q ss_pred --CcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621 147 --GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT- 220 (387)
Q Consensus 147 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 220 (387)
+.+.+.++....... ..-..+.+..+.. ..+--.++..++.. ..++.-+.-|.|++||+.++.++..-+
T Consensus 224 ~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky--gviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp TCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC--CEEEEEecCceEEEEecccceeeeeecc
Confidence 788888884321000 0001111111111 12333456666664 678888899999999999999998877
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
....|...+.+....-++.....|.|.-..++..
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 4556666666666566666668888777766654
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.28 E-value=0.0016 Score=56.76 Aligned_cols=223 Identities=10% Similarity=-0.024 Sum_probs=132.0
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCC----CcccccC-CC
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSS----TPLHNIP-VP 83 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~----~~~~~~~-~~ 83 (387)
+|+.+. ...|+..++........+. ....+.+++|++. ..+..+ -...+.|+.+++... .....+. ..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lyws----D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEE----ETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEE----ecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 344443 3678888887665444443 4455789999872 222221 345678888888652 1222222 23
Q ss_pred CCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCccccc
Q 035621 84 EPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDE 160 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 160 (387)
.....+++.+.+..|+ +-...+.|.+.++........+.........|+++|.+..|+.... .+.|...++.
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d----- 233 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----- 233 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-----
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-----
Confidence 4678899998544444 4456788999998765544444434456899999997666665553 3678888772
Q ss_pred CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCe
Q 035621 161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETD 236 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 236 (387)
+.....+ ...-.....|++.+.. +.+.++-...+.|..+|+........+.. -.....+++. .+..
T Consensus 234 --------G~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~l 303 (400)
T 3p5b_L 234 --------GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKV 303 (400)
T ss_dssp --------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEE
T ss_pred --------CCccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEE
Confidence 2222222 2223567889998765 35555555678899999865433333322 2345566663 3344
Q ss_pred EEEEccCCcEEEEeccc
Q 035621 237 FFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~ 253 (387)
+++-...+.|..++..+
T Consensus 304 ywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 304 FWTDIINEAIFSANRLT 320 (400)
T ss_dssp EEEESSSCSEEEEESSS
T ss_pred EEecCCCCeEEEEEcCC
Confidence 44555577788877554
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.26 E-value=0.0012 Score=60.98 Aligned_cols=227 Identities=11% Similarity=-0.016 Sum_probs=130.9
Q ss_pred CCCeEEEEEccCCC--cccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCC
Q 035621 62 GSGSVHLYNLWSST--PLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDG 137 (387)
Q Consensus 62 ~d~~v~vw~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 137 (387)
....|+..++.... .......-..+..++|++.+..|+.+. ..+.|..+++..... ...+.........+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888886542 222333445688999999777777654 457888888865532 22333333578899999965
Q ss_pred CEEE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCc
Q 035621 138 SLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGT 214 (387)
Q Consensus 138 ~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~ 214 (387)
..|+ +-...+.|.+.++. +.....+. ..-.....|++.|.. +.++++-- ..+.|...++....
T Consensus 96 ~~ly~~d~~~~~I~v~~~d-------------G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLD-------------GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp TEEEEEETTTTEEEEEETT-------------SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCS
T ss_pred CEEEEEeCCCCEEEEEECC-------------CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCc
Confidence 5454 44567889999882 22222222 333456678888764 34444432 24567777765433
Q ss_pred EEEEEe-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621 215 HLSTVT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292 (387)
Q Consensus 215 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 292 (387)
...... .-...+.++++++++.|+.+. ..+.|..+++....+.... .........+++..+ ..+++-.
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---------~~~~~~P~gi~~~~~-~ly~td~ 231 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---------KGSLPHPFALTLFED-ILYWTDW 231 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------CCCEEESSS-EEEEECT
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---------eCCCCCceEEEEeCC-EEEEecC
Confidence 322222 334678999999877766664 4678888888653222111 111222346677655 4555555
Q ss_pred CCCcEEEEECCCccEEEEee
Q 035621 293 EDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~ 312 (387)
..+.|...|..+++....+.
T Consensus 232 ~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 232 STHSILACNKYTGEGLREIH 251 (619)
T ss_dssp TTCSEEEEESSSCCCCEECC
T ss_pred CCCEEEEEECCCCcccEEEe
Confidence 67889999988887655554
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.0015 Score=54.92 Aligned_cols=224 Identities=9% Similarity=-0.042 Sum_probs=129.5
Q ss_pred EEEeeCCCCcEEEEeCCCCc-eeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCccc-ccC-CCCC
Q 035621 10 VILTSSPEGPITAYNPSSGA-ILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLH-NIP-VPEP 85 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~ 85 (387)
+|+.+. ...|+..++.... ....+......+.+++|.+. ..+... -...+.|..++...+.... .+. .-..
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~----D~~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS----DVSEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEE----ETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEE----ECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence 344443 4679999987653 11111112234668888873 222221 3456788888887653221 111 2245
Q ss_pred eeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCC
Q 035621 86 VAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHT 162 (387)
Q Consensus 86 v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~ 162 (387)
...+++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+.+.. .+.|...++.
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d------- 153 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD------- 153 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-------
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-------
Confidence 6788998755544 44456678999998654433333344556799999997666666553 5678777762
Q ss_pred CCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621 163 DDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 240 (387)
+.....+ ...-..-+.++++++. +.+.++-+..+.|..+|+........+. .......+++.. +..+++-
T Consensus 154 ------G~~~~~~~~~~l~~Pnglavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd 225 (318)
T 3sov_A 154 ------GSSRFIIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTD 225 (318)
T ss_dssp ------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEE
T ss_pred ------CCCeEEEEECCCCCccEEEEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEe
Confidence 1112222 1223456789998864 4555666667889999986433322222 234556677743 3444454
Q ss_pred ccCCcEEEEeccc
Q 035621 241 GSDGLIYKGLLKY 253 (387)
Q Consensus 241 ~~dg~i~i~d~~~ 253 (387)
...+.|..++..+
T Consensus 226 ~~~~~V~~~~~~~ 238 (318)
T 3sov_A 226 WSTHSILACNKYT 238 (318)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCCeEEEEECCC
Confidence 5567788777754
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.24 E-value=0.0015 Score=54.41 Aligned_cols=204 Identities=8% Similarity=-0.014 Sum_probs=119.7
Q ss_pred eeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEE-ccC----CC--CCeEEEEE---cCCCCEEEEEe----------
Q 035621 86 VAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRS-FSA----HD--KPVSCLKI---SPDGSLLISGG---------- 144 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~---------- 144 (387)
..+++|.+....+..++ ..++|..||...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 55788988655666655 789999999875544333 222 11 13579999 68877776543
Q ss_pred ---CCCcEEEEeCCcccccCCCCCCCCccceEeee--cc-----------CCCeEEEEEeeCCCCceEEEEeCC-CcEEE
Q 035621 145 ---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AH-----------NDSVTAITCCIGSFNSIIISCSMD-CTCKF 207 (387)
Q Consensus 145 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~~~l~s~~~d-~~i~i 207 (387)
.+..|..||+.-. .+.+.+.... .. ......++..++ |+..++++.. +.|..
T Consensus 95 ~~~g~~~v~~~Dl~~~---------~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~--GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLS---------ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD--GNSYVAFALGMPAIAR 163 (334)
T ss_dssp CSSSCCEEEEEESSCC---------TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT--SCEEEEEEESSCEEEE
T ss_pred ccCCCCEEEEEcCCcC---------CCCCEEEEecCccccccccccccccccCCceeEECCC--CCEEEeCCCCCCeEEE
Confidence 2577899998300 0222322221 11 123667777665 5888888888 88777
Q ss_pred EeCCCCcEEEEEe--c-----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe-ecccccccEEE-
Q 035621 208 WRLLNGTHLSTVT--F-----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGVVVS- 278 (387)
Q Consensus 208 wd~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~- 278 (387)
.+.... .+..+. . ....+.++++|+|+.|++....|.+..+|+...... ...... -....-.....
T Consensus 164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~----~v~~~~~G~~~~~~~~dgi 238 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW----PEPVKINGDFGTLSGTEKI 238 (334)
T ss_dssp ECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC----CEECEESSCCCCCTTEEEE
T ss_pred EeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce----eecccccCCcccccCcccc
Confidence 776533 333222 1 123679999999999999877999999998842110 000100 00001112233
Q ss_pred EEEecCCCE-EEEEeCCCcEEEEECCCc
Q 035621 279 VMMMNEGKN-LVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 279 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~ 305 (387)
+..-.+|+. |++....+.+.+.+.+..
T Consensus 239 lp~~~~G~vllV~~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 239 VTVPVGNESVLVGARAPYAISFRSWDNW 266 (334)
T ss_dssp EEEEETTEEEEEEEETTEEEEEECSSTT
T ss_pred cccccCCEEEEEEcCCCCEEEEECCCCc
Confidence 334457777 555556666666665543
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.0012 Score=58.56 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=130.6
Q ss_pred ccccCC--CcEEEeeCCCCcEEEEeCCCCceeEeccCC---CCCceeEEE-------cCccc--eeeeccccCCCC----
Q 035621 2 LHHLPC--NEVILTSSPEGPITAYNPSSGAILAHFSGS---RSPRRGLTF-------AGKPF--IAASHISPTTGS---- 63 (387)
Q Consensus 2 l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~--~~~~~~~~~~~d---- 63 (387)
|+|+|. ++++++-...+.|++.|++++.....+... ......++| ++++. +.+. ..+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad-----~~~~~~~ 218 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI-----DYDGKGD 218 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE-----CCCTTGG
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe-----CCCCCcc
Confidence 578883 444555444567999998877765544322 234788999 77543 2222 222
Q ss_pred --CeEEEEEccC-CCcc-----cccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCC-------CCce----------
Q 035621 64 --GSVHLYNLWS-STPL-----HNIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVP-------KGDI---------- 117 (387)
Q Consensus 64 --~~v~vw~~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~---------- 117 (387)
..|.+++... +... ..+..-.....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 2355665333 2221 11211134567889995 4545556677889999987 5543
Q ss_pred -eEE-cc-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccc--eEeeecc-------------
Q 035621 118 -LRS-FS-AHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLM--LQKFVAH------------- 178 (387)
Q Consensus 118 -~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~------------- 178 (387)
... +. ........|+|+|++++|+.+ .....|+.++.... .... ...+.+.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~----------~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI----------KKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT----------TTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC----------cceecccEEecCCCCCCcccCCcccc
Confidence 111 11 223456899999999965554 45677887664210 0000 0111110
Q ss_pred --CCCeE-EEEEeeC-----CCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------------------------Cce
Q 035621 179 --NDSVT-AITCCIG-----SFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------------------------CAI 225 (387)
Q Consensus 179 --~~~i~-~~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~v 225 (387)
-.... .+..... ..+.++++-...+.|+.++ .++. +.++... ...
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred cccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 01223 3333310 2346777777788999998 4564 3333210 236
Q ss_pred eEEEeCCC-CCeEEEEccCCcEEEEeccc
Q 035621 226 MGLALDPT-ETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 226 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~ 253 (387)
..++++++ +.++++=..+..|+.+++..
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 67888886 55555556678888888765
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.18 E-value=0.0024 Score=54.85 Aligned_cols=263 Identities=9% Similarity=0.059 Sum_probs=161.3
Q ss_pred CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621 17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS 96 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (387)
+..|.|.|+.++..+..-. -.--+.-.+|...+.+-. ...++.++|+++...+..+..+++|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-----ag~~lQiFnle~K~klks~~~~e~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEE-----ETTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEe-----cCCeEEEEchHHhhhhcceecCCCceEEEecCCC-
Confidence 3468888887755432211 112344556655555543 2689999999999999999988888888887664
Q ss_pred EEEEecCCCcEEEEeCCC-CceeEEccCC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCcccccCCCC
Q 035621 97 YLFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVSCLKISPDGSLLISGGD-------DGVIATVPIFQLVDEHTDD 164 (387)
Q Consensus 97 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~ 164 (387)
.|+..+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+- .|.+.+|..
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~---------- 186 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV---------- 186 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES----------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec----------
Confidence 454443 46799999964 3556666544 345777788899998775442 367888887
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCC---CcEEEEeCCCC--------cEEEEEec-----CCceeE
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMD---CTCKFWRLLNG--------THLSTVTF-----PCAIMG 227 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d---~~i~iwd~~~~--------~~~~~~~~-----~~~v~~ 227 (387)
.....+.+.+|...-..+.+.-+.. ..+++.+... +.++|.++... +....+.. ..-..+
T Consensus 187 ---er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 187 ---DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp ---TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred ---cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 3445566677765544443321111 1344444443 78999998543 11111111 345778
Q ss_pred EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621 228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307 (387)
Q Consensus 228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 307 (387)
+..++.-..++.-+.-|.+++||+.++.... .- +-....|...+-.....=++.....|.|.--.++....
T Consensus 264 mqvs~kygviyviTK~G~i~lyDleTgt~i~--------~n-rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 264 MQISEKHDVVFLITKYGYIHLYDLETGTCIY--------MN-RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEEE--------EE-ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EEecccCCEEEEEecCceEEEEecccceeee--------ee-cccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 8999999999999999999999999843221 11 12233444444444434444444666666666655555
Q ss_pred EEEe
Q 035621 308 VMVL 311 (387)
Q Consensus 308 ~~~~ 311 (387)
+.-+
T Consensus 335 vpyi 338 (494)
T 1bpo_A 335 IPYI 338 (494)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4433
No 298
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00014 Score=68.08 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=114.9
Q ss_pred cccCCCcEEEeeC-CCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCC-CC-----CeEEEEEccCC
Q 035621 3 HHLPCNEVILTSS-PEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTT-GS-----GSVHLYNLWSS 74 (387)
Q Consensus 3 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~-~d-----~~v~vw~~~~~ 74 (387)
++.+++++++.|+ .++.+.+||..+.+....-..+... -.+++..+++.+.. .|+ .+ ..+.+||..++
T Consensus 249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv----~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT----IGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE----ECCCCCSSSCCCCEEEEETTTT
T ss_pred cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEE----EeCcccCCcccccceEeCCCCC
Confidence 3457899999988 4458999999876544322212221 23344443332221 144 23 57899998776
Q ss_pred Ccccc-----cCCCCCeeeEEeccCCCEEEEecCCC---------cEEEEeCCCCceeEEccCCC---------CCeEEE
Q 035621 75 TPLHN-----IPVPEPVAPLATTADGSYLFTGGLSG---------NVYAISVPKGDILRSFSAHD---------KPVSCL 131 (387)
Q Consensus 75 ~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~v~~~ 131 (387)
+.... ......-....+..++...+.|+.+| .+..||..+.........+. ..-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 43221 00001111122334555555555443 46788887765433222111 122444
Q ss_pred EEcC-CCCEEEEEeCCC-----------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEE
Q 035621 132 KISP-DGSLLISGGDDG-----------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIIS 198 (387)
Q Consensus 132 ~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s 198 (387)
.|.. ++++++.|+.++ .+.+||.... ....+..-..+.... .+.+..++ +++++.
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~----------~W~~~~~~~mp~~R~~~~~~~l~~--g~i~v~ 472 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS----------PNTVFASNGLYFARTFHTSVVLPD--GSTFIT 472 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC----------CEEEECTTCCSSCCBSCEEEECTT--SCEEEE
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC----------CeeEEccCCCCCCcccCCeEECCC--CCEEEE
Confidence 5543 677888887543 5666766221 000110000111111 23334445 488888
Q ss_pred EeCC-----------CcEEEEeCCCCcEEEE--EecCC-ceeEEEeCCCCCeEEEEcc
Q 035621 199 CSMD-----------CTCKFWRLLNGTHLST--VTFPC-AIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 199 ~~~d-----------~~i~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l~~~~~ 242 (387)
|+.+ ..+.+||..+.+-... ...+. ......+.|+++.++.|+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 8754 4689999877643221 11222 2234556799999999885
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=0.00013 Score=68.56 Aligned_cols=200 Identities=8% Similarity=-0.019 Sum_probs=113.2
Q ss_pred ccccCCCcEEE-eeCCCCcEEEEeCCC----CceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCC
Q 035621 2 LHHLPCNEVIL-TSSPEGPITAYNPSS----GAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSST 75 (387)
Q Consensus 2 l~~s~~~~~l~-~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~ 75 (387)
|+|++.+..|+ +-...+.|+.+++.. ......+.........|++.+ .+.+ +++-...+.|.++++....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L----Y~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI----YWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC----EECCTTTSCEEEEBSSSCC
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE----EEEeccCCeEEEEecCCCc
Confidence 46777554444 444567888888764 222222222222356677764 2211 1223456789999986554
Q ss_pred cccccCC-CCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 035621 76 PLHNIPV-PEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIAT 151 (387)
Q Consensus 76 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i 151 (387)
....+.. ......+++.|.+.+|+.... .+.|..+++........+...-...+.|+|+|++..|+.+ ...+.|..
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 3333332 245688999997666665543 2678888875433222222223456789999976555444 45678988
Q ss_pred EeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF 221 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 221 (387)
+++.. .....+. ........|++.. +.++++....+.|..+|..+++.+..+..
T Consensus 567 ~d~dG-------------~~~~~~~~~~~~~~~P~glavd~---~~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 567 IDVNG-------------GNRKTILEDEKRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECSSS-------------SCCEEECCCSSSCSSCCCCEEET---TEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EccCC-------------CceEEEEecCCcCCCceEeEEEC---CEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 88731 1111111 1112223444432 25666776778999999888887776653
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.03 E-value=0.0086 Score=55.38 Aligned_cols=196 Identities=8% Similarity=-0.049 Sum_probs=107.8
Q ss_pred ccccCCCcEE-EeeCCCCcEEEEeCCCCce-eEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621 2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLH 78 (387)
Q Consensus 2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~ 78 (387)
++|++.++.| ++=...+.|..+++..... ...+.........+++.+ .+.+.. +-...+.|.+.+++......
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~----~d~~~~~I~v~~~dG~~~~~ 120 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW----TDSETNRIEVSNLDGSLRKV 120 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE----EETTTTEEEEEETTSCSCEE
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE----EeCCCCEEEEEECCCCCEEE
Confidence 4566654444 4444556777777754422 222333334578888886 222222 13567899999986544322
Q ss_pred cc-CCCCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 035621 79 NI-PVPEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPI 154 (387)
Q Consensus 79 ~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 154 (387)
.+ ..-.....+++.|.+.+|+.... .+.|...++............-...+.|++++++..|+.+. ..+.|...|+
T Consensus 121 l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 121 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 22 23356789999997666666543 46777777754433333333345679999999766666554 5567888887
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL 216 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 216 (387)
... ...............+++..+ .++++-...+.|...|..+++..
T Consensus 201 dG~------------~~~~~~~~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 201 DGT------------NRQAVVKGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SCC------------EEC---------CCCEEESSS---EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCC------------ccEEEEeCCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCccc
Confidence 321 010001101111234554322 45555556778888887776543
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0022 Score=56.92 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=120.5
Q ss_pred CeeeEEecc-CCCEEEEecC-CCcEEEEeCCCCceeEEccCC---CCCeEEEEE-------cCCCCEEEEEeCCC-c---
Q 035621 85 PVAPLATTA-DGSYLFTGGL-SGNVYAISVPKGDILRSFSAH---DKPVSCLKI-------SPDGSLLISGGDDG-V--- 148 (387)
Q Consensus 85 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-~--- 148 (387)
....|+|.| ++..|+++.. .+.|++.|++++......... ......++| ++++++|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 466889998 3555555543 467999998877765544321 235899999 99999777766554 2
Q ss_pred ---EEEEeCCcccccCCCCCCCCc-cceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-------CCcE--
Q 035621 149 ---IATVPIFQLVDEHTDDKNPDD-LMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-------NGTH-- 215 (387)
Q Consensus 149 ---i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~-- 215 (387)
|.+++.... . . ... .....+... .....++++|+. +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~--G---~--~~~~~~~~~v~~~-~~p~giavdp~~-g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 220 SPSVYIIKRNAD--G---T--FDDRSDIQLIAAY-KQCNGATIHPIN-GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEEEECCTT--S---C--CSTTSCEEEEEEE-SCCCCEEECTTT-CCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CceEEEEecCCC--C---c--eeecccceeeccC-CCceEEEEcCCC-CeEEEEECCCCEEEEEecccccccccCceeec
Confidence 555543110 0 0 000 000111111 223466777753 4667777788899999987 5543
Q ss_pred ---------EEE-Ee--cCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEee-----------ccc
Q 035621 216 ---------LST-VT--FPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTL-----------ANR 271 (387)
Q Consensus 216 ---------~~~-~~--~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------~~~ 271 (387)
... +. .......++|+|+|+.|+.+ .....|+.++......... ....+... ...
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~-~~~~~aG~~g~~G~~DG~~~~a 369 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI-TPYNFVGGYKQSGYRDDVGTEA 369 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC-CCEEEEEBTTBCCCBCCBGGGC
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec-ccEEecCCCCCCcccCCccccc
Confidence 122 22 23456899999999965555 5578898877643211000 00000000 001
Q ss_pred ccccEE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621 272 HDGVVV-SVMMM-------NEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311 (387)
Q Consensus 272 ~~~~v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (387)
.-.... .++.. +++.++++=.....|+.++ .+|. +.++
T Consensus 370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti 415 (496)
T 3kya_A 370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY 415 (496)
T ss_dssp BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence 112344 45554 4566666666778899988 4564 3344
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.96 E-value=0.014 Score=55.53 Aligned_cols=216 Identities=11% Similarity=-0.039 Sum_probs=126.5
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCC----CcccccC-CCCCeeeEEe
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSS----TPLHNIP-VPEPVAPLAT 91 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~----~~~~~~~-~~~~v~~~~~ 91 (387)
..|+..++........+. ....+.+++|.+ +..+..+ -...+.|+.+++... .....+. .......|++
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~s----D~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEE----ETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEe----eccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 567888876555443333 344577888886 2222221 345678888888653 2222222 2345778999
Q ss_pred ccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCCCCCCC
Q 035621 92 TADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 92 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
.+.++.|+.+ ...+.|.+.++........+.........|+++|.+.+|+.+.. .+.|...++ .
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~-------------d 545 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-------------N 545 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-------------T
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec-------------C
Confidence 9877655554 46679999998755443334334456899999997666666553 267887777 2
Q ss_pred ccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEE-ccC
Q 035621 169 DLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAA-GSD 243 (387)
Q Consensus 169 ~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~d 243 (387)
+.....+ ...-.....|++.+.. +.++++-...+.|..+++........+.. -.....|++. +..|+.+ ...
T Consensus 546 G~~~~~lv~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 546 GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred CCceEEEEeCCCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 2222222 2233567889988764 35555555567899999865444333332 1234566663 3344444 456
Q ss_pred CcEEEEecccc
Q 035621 244 GLIYKGLLKYQ 254 (387)
Q Consensus 244 g~i~i~d~~~~ 254 (387)
+.|...+..++
T Consensus 623 ~~I~~~dk~tG 633 (791)
T 3m0c_C 623 EAIFSANRLTG 633 (791)
T ss_dssp TEEEEEETTTC
T ss_pred CEEEEEeCCCC
Confidence 77777775543
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.86 E-value=0.0036 Score=52.09 Aligned_cols=165 Identities=7% Similarity=0.041 Sum_probs=105.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceE-eeec----cCC--CeEEEEE---eeCC
Q 035621 123 AHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQ-KFVA----HND--SVTAITC---CIGS 191 (387)
Q Consensus 123 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--~i~~~~~---~~~~ 191 (387)
......-+++|++....+..++ ..+.|..||... ..... .+.. ... .+..+.+ .|.
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~------------~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~- 76 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT------------QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS- 76 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTT------------CCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC------------CeEEEEecCCccccCCCcceeeEEEEeccCCC-
Confidence 3344456789988555555555 789999998831 11111 1111 111 2467777 344
Q ss_pred CCceEEEEe-------------CCCcEEEEeCC---CCcEEEEEecC--------------CceeEEEeCCCCCeEEEEc
Q 035621 192 FNSIIISCS-------------MDCTCKFWRLL---NGTHLSTVTFP--------------CAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 192 ~~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~ 241 (387)
++++++.. .+..|..||+. +++.+...... .....++..++|+..++++
T Consensus 77 -grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 77 -KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp -CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred -CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 46776543 26779999999 88877766521 2488999999999999988
Q ss_pred cC-CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621 242 SD-GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305 (387)
Q Consensus 242 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 305 (387)
.. +.|...+......... .............+.|+++|+|+.|++....|.|..+|+...
T Consensus 156 ~~~~~I~rV~pdG~~~~~~----~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 156 LGMPAIARVSADGKTVSTF----AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp ESSCEEEEECTTSCCEEEE----EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCeEEEEeCCCCEEeee----eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 88 8887777654211100 000000112234679999999998888877999999998853
No 304
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0015 Score=55.05 Aligned_cols=114 Identities=17% Similarity=0.351 Sum_probs=71.6
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEeccCC-CCCceeEEEcCccceeeecccc-CCCCCeEEEEEccCCCcccccCCCCCe
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAHFSGS-RSPRRGLTFAGKPFIAASHISP-TTGSGSVHLYNLWSSTPLHNIPVPEPV 86 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~vw~~~~~~~~~~~~~~~~v 86 (387)
.+++.++.||.|+-.|.++|+...+++.. ..++.... .+........++. ...||.+..++..+|.....+..+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 47888899999999999999999888654 12222111 0100000011111 258999999998887544333322111
Q ss_pred e--eEEec-----------cCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621 87 A--PLATT-----------ADGSYLFTGGLSGNVYAISVPKGDILRSFSA 123 (387)
Q Consensus 87 ~--~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 123 (387)
. -+... ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1 11211 1456789999999999999999999988863
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.70 E-value=0.0043 Score=52.75 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=110.0
Q ss_pred cccCCCcEEEeeC------------CCCcEEEEeCCC--CceeEec--cC-----CCCCceeEEEcCc--c---ceeeec
Q 035621 3 HHLPCNEVILTSS------------PEGPITAYNPSS--GAILAHF--SG-----SRSPRRGLTFAGK--P---FIAASH 56 (387)
Q Consensus 3 ~~s~~~~~l~~~~------------~dg~i~iwd~~~--~~~~~~~--~~-----~~~~v~~~~~~~~--~---~~~~~~ 56 (387)
...|+|..+++++ .+|.|.++|+++ ++. ..+ .+ .......+.+.++ + .+..+.
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 4567776666552 689999999873 222 222 22 1234666766442 2 223222
Q ss_pred cccCCCCCeEEEEEccCCCc----ccccCCC--CCeeeEEeccCCCEEEEec-----------------CCCcEEEEeCC
Q 035621 57 ISPTTGSGSVHLYNLWSSTP----LHNIPVP--EPVAPLATTADGSYLFTGG-----------------LSGNVYAISVP 113 (387)
Q Consensus 57 ~~~~~~d~~v~vw~~~~~~~----~~~~~~~--~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~ 113 (387)
...+.++.+|+++.... +..+.+. ...+.+.+.++|.+.++.. ..|.|..+|.
T Consensus 135 ---~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 135 ---PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp ---STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred ---CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 22467888888765422 2223322 4678999999998777653 1245666654
Q ss_pred CCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC
Q 035621 114 KGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF 192 (387)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (387)
++. ..+...-...+.++|+||++.|+.+. ..+.|..|++... ........+ ...+....+++.++ +
T Consensus 211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~---------g~l~~~~~~-~~~g~PDGi~vD~e-~ 277 (355)
T 3sre_A 211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN---------WTLTPLRVL-SFDTLVDNISVDPV-T 277 (355)
T ss_dssp -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT---------SCEEEEEEE-ECSSEEEEEEECTT-T
T ss_pred -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC---------CcEecCEEE-eCCCCCceEEEeCC-C
Confidence 332 22222234578999999998777665 5688999988321 011111222 22345566776652 1
Q ss_pred CceEEEEeCC-CcEEEEeCC--CCcEEEEEe
Q 035621 193 NSIIISCSMD-CTCKFWRLL--NGTHLSTVT 220 (387)
Q Consensus 193 ~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~ 220 (387)
|++.+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 4676666544 344445543 244455554
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.67 E-value=0.021 Score=48.78 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=119.0
Q ss_pred CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC----CCCCeeeEEeccC---CCEEEEecCC-----
Q 035621 39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP----VPEPVAPLATTAD---GSYLFTGGLS----- 104 (387)
Q Consensus 39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d----- 104 (387)
.....++|.|++.+... ...|.|.+++ +++. +..+. .......++++|+ +..|+++...
T Consensus 31 ~~P~~ia~~pdG~l~V~-----e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-----ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp SCEEEEEECTTSCEEEE-----ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCceEEEEcCCCeEEEE-----eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 34679999997654432 3458899888 3432 11111 2356889999998 5566555432
Q ss_pred -CcEEEEeCCCCc-----e-eEEcc---CCCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCcccccC
Q 035621 105 -GNVYAISVPKGD-----I-LRSFS---AHDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIFQLVDEH 161 (387)
Q Consensus 105 -g~i~i~d~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~ 161 (387)
+.|..++...+. . +..+. ........++|.|+|.+.++.+.. |.|.-++.....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~--- 180 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP--- 180 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB---
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC---
Confidence 568888876432 1 12232 111234689999999766664322 445444442100
Q ss_pred CCCCCC------CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE------EEEeCCCCc---------------
Q 035621 162 TDDKNP------DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC------KFWRLLNGT--------------- 214 (387)
Q Consensus 162 ~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i------~iwd~~~~~--------------- 214 (387)
...++ ....+. ..++. ....++|.|.. +.++++-.....+ .+.-+..+.
T Consensus 181 -p~~npf~~~~~~~~~i~-a~G~r-np~g~a~d~~~-g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~ 256 (352)
T 2ism_A 181 -APGNPFLGRRGARPEVY-SLGHR-NPQGLAWHPKT-GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPR 256 (352)
T ss_dssp -CTTCTTTTCTTSCTTEE-EECCS-EECCCEECTTT-CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTT
T ss_pred -CCCCcccCCCCCCccEE-EEcCC-CcccEEEECCC-CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCC
Confidence 00000 011111 11222 24567777732 3554443332221 122222221
Q ss_pred ---EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 215 ---HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 215 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
++..+........++| .+|..+++.-..+.|...++........ ......++ .....+..+++.|||.++++.
T Consensus 257 ~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~--~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 257 YRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR--VLRVETAL-SGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp SCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE--EEEEEEEE-ESSCCEEEEEECTTSCEEEEE
T ss_pred CcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee--ecchheec-ccCCCeeEEEECCCCcEEEEE
Confidence 2222222334567777 4566666555667787777764321100 00011122 223578999999999877665
Q ss_pred e
Q 035621 292 A 292 (387)
Q Consensus 292 ~ 292 (387)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.66 E-value=0.021 Score=48.72 Aligned_cols=232 Identities=13% Similarity=0.099 Sum_probs=116.2
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCce--eEecc---CCCCCceeEEEcCc-----cceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAI--LAHFS---GSRSPRRGLTFAGK-----PFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~-----~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
++|.|+|+++++- .+|.|++++ +++. +..+. ........++++|+ ..+.+..-......+.|..++.
T Consensus 36 ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 5789999866664 459999998 3432 22221 22345789999996 3333221000000156777777
Q ss_pred cCCC-----cc-cccCC----CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC------------c
Q 035621 72 WSST-----PL-HNIPV----PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG------------D 116 (387)
Q Consensus 72 ~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------------~ 116 (387)
..+. .+ ..+.. ......++|.|+|.+.++.+. .|.|.-++.... .
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 192 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA 192 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence 6431 11 11221 123468999999976665432 145666665420 0
Q ss_pred eeEEc-cCCCCCeEEEEEcC-CCCEEEEEeCCCc--------EEEEeCCcc--cccCCCCC--CCCccceEeeeccCCCe
Q 035621 117 ILRSF-SAHDKPVSCLKISP-DGSLLISGGDDGV--------IATVPIFQL--VDEHTDDK--NPDDLMLQKFVAHNDSV 182 (387)
Q Consensus 117 ~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~--------i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~i 182 (387)
....+ .++ .....++|+| +++++++-..... |.+..-... +....... .....+...+..| ...
T Consensus 193 ~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap 270 (352)
T 2ism_A 193 RPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPP 270 (352)
T ss_dssp CTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCE
T ss_pred CccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCC
Confidence 00111 122 2356789999 5664444332222 332211100 00000000 0011233333222 345
Q ss_pred EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEE-ecCCceeEEEeCCCCCeEEEEc
Q 035621 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTV-TFPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~ 241 (387)
..+++ .. +.++++.-..+.|...++..... ...+ .....+..+++.|||.++++..
T Consensus 271 ~G~~~-~~--G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 271 GNLAF-FR--GDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEE-ET--TEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cceEE-EC--CEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 66777 33 46666666677788877764321 1122 2345788999999987666654
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.61 E-value=0.043 Score=50.83 Aligned_cols=224 Identities=9% Similarity=-0.034 Sum_probs=135.3
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV 86 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v 86 (387)
+|+.+ ....|+..++.+......+. ..-..+.+++|++. ..+..+ -..++.|..+++........+... ...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywt----D~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWT----DISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEE----ECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 44444 34679999998665433332 12345778999873 222222 345788988888655433333322 457
Q ss_pred eeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCC
Q 035621 87 APLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 87 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 163 (387)
..+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|....|+.... .+.|...++.
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-------- 154 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-------- 154 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--------
Confidence 789998866655544 45678999998654433333234456799999996556665553 4667777662
Q ss_pred CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621 164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
+.....+...-.....|++.+.. +.+.++-...+.|..+|+..... ..+. .......+++.. +..+++-..
T Consensus 155 -----G~~~~~l~~~~~~P~GlalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 155 -----GSERTTLVPNVGRANGLTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp -----SCSCEEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETT
T ss_pred -----CCceEEEECCCCCcceEEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCC
Confidence 22222222344567789998864 35555556678899999875443 2232 334456777765 344444445
Q ss_pred CCcEEEEecccc
Q 035621 243 DGLIYKGLLKYQ 254 (387)
Q Consensus 243 dg~i~i~d~~~~ 254 (387)
.+.|...|..++
T Consensus 227 ~~~I~~~dk~tg 238 (628)
T 4a0p_A 227 RRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTTC
T ss_pred CCEEEEEECCCC
Confidence 788888886554
No 309
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.60 E-value=0.0075 Score=59.84 Aligned_cols=216 Identities=9% Similarity=0.034 Sum_probs=132.7
Q ss_pred CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621 18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY 97 (387)
Q Consensus 18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (387)
.+|.|.|+.++..+..-+ -.--+.-.+|...+.+-. ...++.++|+++...+..+..+++|.--.|-.+..
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-----ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT- 118 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-----cCCeEEEeehHHhhhhcccccCCCceEEEecCCCe-
Confidence 467777777655432111 112233456655555432 36789999999999999999888888888876544
Q ss_pred EEEecCCCcEEEEeCCC-CceeEEccCC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEeCCcccccCCCCC
Q 035621 98 LFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVSCLKISPDGSLLISGG-------DDGVIATVPIFQLVDEHTDDK 165 (387)
Q Consensus 98 l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~ 165 (387)
|+..+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+ -.|.+.+|...
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e---------- 187 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---------- 187 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc----------
Confidence 44433 45699999964 3444445444 35677777888888877544 34778888773
Q ss_pred CCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeC---CCcEEEEeCCCC---cE-E----EEEe-----cCCceeEE
Q 035621 166 NPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSM---DCTCKFWRLLNG---TH-L----STVT-----FPCAIMGL 228 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~---d~~i~iwd~~~~---~~-~----~~~~-----~~~~v~~~ 228 (387)
....+.+.+|...-..+...-... ..+++.+.. .+.++|.++... .+ . ..+. ......++
T Consensus 188 ---r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 188 ---RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ---cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 223344455554433333221111 123332222 268999888543 11 1 1111 12346678
Q ss_pred EeCCCCCeEEEEccCCcEEEEecccccc
Q 035621 229 ALDPTETDFFAAGSDGLIYKGLLKYQSR 256 (387)
Q Consensus 229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 256 (387)
..++.-..++.-+.-|.|+++|+.++..
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchh
Confidence 8888888999999999999999998653
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.021 Score=47.44 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=107.1
Q ss_pred CeEEEEEccCCCcccccCCCCC-eeeEEeccCCCEEEEecCC-----CcEEEEeCCCCc---eeE--EccCCCCCeEEEE
Q 035621 64 GSVHLYNLWSSTPLHNIPVPEP-VAPLATTADGSYLFTGGLS-----GNVYAISVPKGD---ILR--SFSAHDKPVSCLK 132 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~--~~~~~~~~v~~~~ 132 (387)
..+.+||..+++-...-..+.+ ....+...++..++.|+.+ ..+.+||+.+.+ -.. .+.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3567777766542221111111 1122223356777777754 368999988766 222 2222222222333
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----
Q 035621 133 ISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD----- 202 (387)
Q Consensus 133 ~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----- 202 (387)
+ ++++++.|+.++ .+.+||+... ....+..+......- +++. .+ +.+++.|+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~ 174 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNID----------QWSMLGDMQTAREGA-GLVV-AS--GVIYCLGGYDGLNIL 174 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTT----------EEEEEEECSSCCBSC-EEEE-ET--TEEEEECCBCSSCBC
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCC----------eEEECCCCCCCcccc-eEEE-EC--CEEEEECCCCCCccc
Confidence 3 567777776543 5777877321 111111111111111 1222 23 4677777654
Q ss_pred CcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccccc
Q 035621 203 CTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGV 275 (387)
Q Consensus 203 ~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (387)
..+.+||+.+.+-...-.. +..-.+++. -+++.++.|+.+ ..+.+||+.+......... . .....
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~------p-~~r~~ 246 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM------T-TPRCY 246 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC------S-SCCBS
T ss_pred ceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC------C-Ccccc
Confidence 4588999887653322111 111112222 256667777653 4688999877543322111 0 11111
Q ss_pred EEEEEEecCCCEEEEEeCC-----CcEEEEECCCccE
Q 035621 276 VVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQV 307 (387)
Q Consensus 276 v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 307 (387)
...+. -++++++.|+.+ ..+.+||+++.+-
T Consensus 247 ~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 247 VGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred eeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 12222 267777888765 3578888877643
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.47 E-value=0.11 Score=51.83 Aligned_cols=129 Identities=9% Similarity=0.093 Sum_probs=80.4
Q ss_pred cEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccCCCCCeeeEEeccC-
Q 035621 19 PITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIPVPEPVAPLATTAD- 94 (387)
Q Consensus 19 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~~~~~v~~~~~~~~- 94 (387)
.|++.+...+..+..+.... ..|...+.+....+. + .++.+.++.+..++. ......+..|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvv------a-~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~ 565 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV------A-VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLG 565 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEE------E-ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEE------E-ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence 35666655455565565332 346666665532222 2 246788888766532 223335678999999863
Q ss_pred -----CCEEEEecC-CCcEEEEeCCCCceeEEccC-CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 035621 95 -----GSYLFTGGL-SGNVYAISVPKGDILRSFSA-HDKPVSCLKISP--DGSLLISGGDDGVIATVPI 154 (387)
Q Consensus 95 -----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 154 (387)
++++++|.. |++++++++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+.+
T Consensus 566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 468999986 99999999988776544321 122344444432 3357889999999876655
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.46 E-value=0.015 Score=57.86 Aligned_cols=236 Identities=12% Similarity=0.127 Sum_probs=138.2
Q ss_pred ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCC
Q 035621 4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPV 82 (387)
Q Consensus 4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~ 82 (387)
.+|..+.+|.-. ..++.|+|+++.+.+..+.- ..+|.--.|-....+.. -.+..|.-|++.. ..+.+.+..
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~l------VT~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL------VTDNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEE------EcCCeEEEeccCCCCccHHHHhc
Confidence 367777777765 57899999998888777653 34566667765433322 1467899999964 345555542
Q ss_pred -----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--C-CCEEEEEeC--
Q 035621 83 -----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--D-GSLLISGGD-- 145 (387)
Q Consensus 83 -----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~-- 145 (387)
...|..-..+++.++++..| -.|.+.+|..+.+ ..+.+.+|.+....+.... . ...++.+..
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~ 223 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecC
Confidence 24577777788888877543 3478899987543 3455667765554444421 1 123332222
Q ss_pred -CCcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621 146 -DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT- 220 (387)
Q Consensus 146 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 220 (387)
.+.+.+-++........ . -..+.+..+.. ..+--.++..++.. ..+..-+.-|.|.+||+.++.++..-+
T Consensus 224 ~g~kLhi~Ei~~~~~~~~--~-f~kk~~~~~~~~~~~~Dfpv~~~vs~k~--g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 224 AGGKLHIIEVGTPPTGNQ--P-FPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred CCceEEEEecCCCccCCC--C-CccccccccCCcccccCcceEEEecccc--CEEEEEecCceEEEEecccchhhhhccc
Confidence 26888888843211100 0 00111111111 12223345556554 677777889999999999999887665
Q ss_pred cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
...+|...+.++...-++.....|.|.-..+..
T Consensus 299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 344555445454444455555666666555544
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.45 E-value=0.0097 Score=51.18 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=98.8
Q ss_pred ccCCCEEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
..+|..++.+ .++.||.-++......+.++.. -..|..+..+|+|++|+..+. ..|.+-.+.............
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 3455666655 3477888787644444444322 236888999999999998865 578888884211000000000
Q ss_pred CccceEeeec------cCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCc--EEEEEe----------cCCceeEE
Q 035621 168 DDLMLQKFVA------HNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGT--HLSTVT----------FPCAIMGL 228 (387)
Q Consensus 168 ~~~~~~~~~~------~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~--~~~~~~----------~~~~v~~~ 228 (387)
.....+.+.. ...+|..+.|+|-+. +..|++-..|+.|++||+.... +. .+. ....+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 0111223322 256799999999864 4689999999999999998622 22 332 11568899
Q ss_pred EeCCCCCeEEEEc--cCCcEEEE
Q 035621 229 ALDPTETDFFAAG--SDGLIYKG 249 (387)
Q Consensus 229 ~~~~~~~~l~~~~--~dg~i~i~ 249 (387)
+|.+++-.|++.+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988888855 78888754
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.40 E-value=0.0054 Score=52.70 Aligned_cols=141 Identities=12% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCeEEEEEccCCCcccccCCC-----CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc------------eeEEccC--
Q 035621 63 SGSVHLYNLWSSTPLHNIPVP-----EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD------------ILRSFSA-- 123 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~-- 123 (387)
++.||.-++.....-+.+..+ ..+..+..+|+|++||..+ +..|.|..+..+. ..+.+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 566666666544333333332 2577899999999999886 4579998887332 1112221
Q ss_pred ----CCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621 124 ----HDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 124 ----~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (387)
...+|..+.|+| .+..|++-..|+.|++||+....+... ..+ ..............|.+++|..++ -.|
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~-k~~~~fg~d~~~~ev~S~~Fg~~~--lTL 194 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN-KPNNSFGLDARVNDITDLEFSKDG--LTL 194 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES-CCCSEEESCSSCCCEEEEEECTTS--SCE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh-ccccccCCCcccceEEEEEEcCCC--cEE
Confidence 256799999999 456899999999999999965221111 000 000111222334678888887754 445
Q ss_pred EE--EeCCCcEEEE
Q 035621 197 IS--CSMDCTCKFW 208 (387)
Q Consensus 197 ~s--~~~d~~i~iw 208 (387)
.. .+..|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 54 4466776644
No 315
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.39 E-value=0.048 Score=46.01 Aligned_cols=253 Identities=7% Similarity=-0.022 Sum_probs=128.4
Q ss_pred CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-----CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621 38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-----VPEPVAPLATTADGSYLFTGGLSGNVYAISV 112 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 112 (387)
...+.++.+.+.....+ .+..|.| +...+.++.-.... ....+..+.+.+ +. +++++..+.|.. ..
T Consensus 35 ~~~~~~v~~~~~~~~~~-----~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-----VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TT 105 (327)
T ss_dssp SSCEEEEEESSSSCEEE-----EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ES
T ss_pred CCcEEEEEECCCCcEEE-----EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-EC
Confidence 34688888875433222 2345654 33333343222221 133688899876 44 444455664443 22
Q ss_pred CCCceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcE-EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621 113 PKGDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVI-ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188 (387)
Q Consensus 113 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (387)
..++.-.... .+...+..+.+.+++..++++ .+|.| +-.|--.. ...+ .......+..+.+.
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~t-----------W~~~--~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKN-----------WQAL--VQEAIGVMRNLNRS 171 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSS-----------EEEE--ECSCCCCEEEEEEC
T ss_pred CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCC-----------CEEe--ecCCCcceEEEEEc
Confidence 3343322222 233557788887777655555 45544 33332111 1111 12334567788887
Q ss_pred eCCCCceEEEEeCCCcEEE-EeC--CCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621 189 IGSFNSIIISCSMDCTCKF-WRL--LNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL 265 (387)
Q Consensus 189 ~~~~~~~l~s~~~d~~i~i-wd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 265 (387)
++ +.+++.+ .+|.+.. .|- .+.+.+ .......+..+.+.+++..+ +++.+|.+++.+...+..........
T Consensus 172 ~~--~~~~~~g-~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~- 245 (327)
T 2xbg_A 172 PS--GEYVAVS-SRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPL- 245 (327)
T ss_dssp TT--SCEEEEE-TTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTT-
T ss_pred CC--CcEEEEE-CCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCc-
Confidence 75 3666555 4454443 342 222332 12245678899999988655 44557777765322111111100000
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc--cCCCceeEEEE
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE--LAGSISEMVIA 325 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~ 325 (387)
..+...+..+.+.+++..++++ .+|.| ++..+.|+.-..+... ....+..+.|.
T Consensus 246 ----~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 246 ----RRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp ----SSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred ----ccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 0123458889999887777765 46766 4555666554444422 12356666665
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.34 E-value=0.033 Score=46.33 Aligned_cols=188 Identities=14% Similarity=0.123 Sum_probs=93.7
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccccC
Q 035621 94 DGSYLFTGGLS-----GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVDEH 161 (387)
Q Consensus 94 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 161 (387)
++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+.++ .+.+||+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~---- 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN---- 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT----
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC----
Confidence 66677777754 3588999877653222 2211222223333 567777777654 4667776321
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-------CcEEEEeCCCCcEEEEEe--cCCceeEEEeCC
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-------CTCKFWRLLNGTHLSTVT--FPCAIMGLALDP 232 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~ 232 (387)
....+..+....... +++.. + +.+++.|+.+ ..+.+||+.+.+-...-. .+..-.+++..
T Consensus 135 ------~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 203 (302)
T 2xn4_A 135 ------EWFHVAPMNTRRSSV-GVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL- 203 (302)
T ss_dssp ------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred ------eEeecCCCCCcccCc-eEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-
Confidence 111111111111111 12222 2 3666766543 358899988765332211 12111222222
Q ss_pred CCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-----cEEEEEC
Q 035621 233 TETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-----SVYIWEI 302 (387)
Q Consensus 233 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~ 302 (387)
+++.++.|+.+ ..+.+||..+.......... .. ...-..+. .++++++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN------MC-RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS------SC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC------Cc-cccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence 56677777654 46888998765433221110 01 11111122 2677788887653 4889998
Q ss_pred CCccE
Q 035621 303 EKRQV 307 (387)
Q Consensus 303 ~~~~~ 307 (387)
.+.+-
T Consensus 275 ~~~~W 279 (302)
T 2xn4_A 275 TTDKW 279 (302)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 87654
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.34 E-value=0.057 Score=45.84 Aligned_cols=208 Identities=10% Similarity=0.063 Sum_probs=116.9
Q ss_pred CeeeEEeccCCCEEEEe------------cCCCcEEEEeCCC--CceeEEc--cC-----CCCCeEEEEEcC--CCC-EE
Q 035621 85 PVAPLATTADGSYLFTG------------GLSGNVYAISVPK--GDILRSF--SA-----HDKPVSCLKISP--DGS-LL 140 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~--~~~~~~~--~~-----~~~~v~~~~~~~--~~~-~l 140 (387)
....+...|+|..++++ ..+|.|.++|+.+ ++. ..+ .+ .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 35566677776544443 1689999999873 222 222 22 123567777755 344 44
Q ss_pred EEEe-C--CCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEeC---------------
Q 035621 141 ISGG-D--DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCSM--------------- 201 (387)
Q Consensus 141 ~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~--------------- 201 (387)
+++. . +..|.+|++... ......+..+.+. -...+.+.+.+++ .+.++...
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~--------~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEE--------EKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEEECSTTCCEEEEEEEETT--------TTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEEECCCCCCeEEEEEEECC--------CCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhcc
Confidence 4442 2 467888877321 0111223333322 2357888888874 66666431
Q ss_pred --CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621 202 --DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 202 --d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (387)
.|.|.-+|. ++.......-...+.++|+||++.++++. ..+.|+.|++....... .... + ...+..-.
T Consensus 200 ~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~---~~~~---~-~~~g~PDG 270 (355)
T 3sre_A 200 LAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT---PLRV---L-SFDTLVDN 270 (355)
T ss_dssp CCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEE---E-ECSSEEEE
T ss_pred CCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe---cCEE---E-eCCCCCce
Confidence 234544544 33322233335678999999998887775 47899999987421111 0111 1 12466788
Q ss_pred EEEec-CCCEEEEEeCC-CcEEEEECC--CccEEEEee
Q 035621 279 VMMMN-EGKNLVSAAED-GSVYIWEIE--KRQVVMVLK 312 (387)
Q Consensus 279 ~~~s~-~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~ 312 (387)
+++.+ +|++.+++..+ +.|..|+.+ .+..+..+.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 99999 59887766544 355555544 245555554
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.30 E-value=0.066 Score=45.70 Aligned_cols=237 Identities=15% Similarity=0.092 Sum_probs=121.7
Q ss_pred CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-cccccC----CCCCeeeEEeccC---CCEEEEecC----C-
Q 035621 38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-PLHNIP----VPEPVAPLATTAD---GSYLFTGGL----S- 104 (387)
Q Consensus 38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~----d- 104 (387)
-.....++|.|++.+.. +..+|.|++++ .+++ .+..+. .......++++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-----~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-----TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp CSCEEEEEEEETTEEEE-----EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCCeEEEEcCCCeEEE-----EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 34468899998765443 33458898887 3443 222211 2346889999997 555655443 2
Q ss_pred ---CcEEEEeCCCC--c-----ee-EEccC-CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCcccc
Q 035621 105 ---GNVYAISVPKG--D-----IL-RSFSA-HDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIFQLVD 159 (387)
Q Consensus 105 ---g~i~i~d~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~ 159 (387)
+.|..|+.... . .+ ..+.. .......|+|.|||.+.++.+.. |.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-- 179 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-- 179 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--
Confidence 56777876544 1 11 11221 11234679999999876664432 34444443110
Q ss_pred cCCCCCCCC-ccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCC--------C--------cEEEEE
Q 035621 160 EHTDDKNPD-DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLN--------G--------THLSTV 219 (387)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~--------~--------~~~~~~ 219 (387)
....++- ...+. ..++. ....++|.|.. +.++++-.... .|.+..-.. + .++..+
T Consensus 180 --~p~~npf~~~~i~-a~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 180 --PPADNPFPNSPIW-SYGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp --CCTTSSSTTCCEE-EECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred --CCCCCCCCCCcEE-EEccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 0000000 01111 12332 23468888732 35444432221 233322100 0 122233
Q ss_pred -ecCCceeEEEeC-------CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621 220 -TFPCAIMGLALD-------PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 220 -~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 291 (387)
.....+..++|. .+|.++++.-..+.|...++...... .....++......+..+++.|||.++++.
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~-----~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV-----RKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-----EEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-----cceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 223457788884 45666666666778888887652211 01112222234578999999999876665
Q ss_pred e
Q 035621 292 A 292 (387)
Q Consensus 292 ~ 292 (387)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.24 E-value=0.078 Score=47.29 Aligned_cols=296 Identities=11% Similarity=0.046 Sum_probs=154.2
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCC-------------------------CceeEEEcC-ccceeeecccc-CCC
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRS-------------------------PRRGLTFAG-KPFIAASHISP-TTG 62 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~v~~~~~~~-~~~~~~~~~~~-~~~ 62 (387)
.|.+|+..|.|+|+-+.+++.+..+.-... ......++- ++.+...+++. .-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 378899999999999999988776642110 011111111 22222222222 223
Q ss_pred CCeEEEEEccCCCcccccC--CCCCeeeEEec--cCCCEEEEecCC-------CcEE------------EEeCCCCceeE
Q 035621 63 SGSVHLYNLWSSTPLHNIP--VPEPVAPLATT--ADGSYLFTGGLS-------GNVY------------AISVPKGDILR 119 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~--~~~~~l~~~~~d-------g~i~------------i~d~~~~~~~~ 119 (387)
+..|...++...++-+.+. ....+..++|- |+..|+++++.. |... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 4566666776666544444 44678888886 677888877632 2210 11222222211
Q ss_pred EccCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCcccccCCC----CCC---------CC---
Q 035621 120 SFSAHDKPVSCLKISPDGSLLISGGDDG---------------VIATVPIFQLVDEHTD----DKN---------PD--- 168 (387)
Q Consensus 120 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~----~~~---------~~--- 168 (387)
.+. -.+....+...+++.+.++.+.+. .+.++++.+....... ..+ ..
T Consensus 232 Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 111 022333455577788888776542 2566665432111000 000 00
Q ss_pred -ccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCC------c-------EEEEEecCCceeEEEeCCC
Q 035621 169 -DLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNG------T-------HLSTVTFPCAIMGLALDPT 233 (387)
Q Consensus 169 -~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~------~-------~~~~~~~~~~v~~~~~~~~ 233 (387)
...+..+..-......+.++|++ ++++. +-.+.++.++|++.. + .....+........+|.++
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDG--kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDG--KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTS--CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCC--CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC
Confidence 01111111222233456667775 55554 455889999998742 1 1334445677899999999
Q ss_pred CCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEE-----EEecCCCEEEEEe---CCCcE-------
Q 035621 234 ETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSV-----MMMNEGKNLVSAA---EDGSV------- 297 (387)
Q Consensus 234 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-----~~s~~~~~l~s~~---~dg~i------- 297 (387)
|.-..+-.-|..|..|++....+... .+...+.....-|-.+-... .-.|+|++|++.. .|..+
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~p 468 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHP 468 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCC
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCC
Confidence 94444555799999999976421110 00112222222333322111 1257899999874 45544
Q ss_pred ---EEEECCCccEE
Q 035621 298 ---YIWEIEKRQVV 308 (387)
Q Consensus 298 ---~iwd~~~~~~~ 308 (387)
.+.|+...+..
T Consensus 469 en~QlidIsGdkM~ 482 (638)
T 3sbq_A 469 ENDQLIDISGDEMK 482 (638)
T ss_dssp EEEEEEECSSSSCE
T ss_pred CcceeEecCCCceE
Confidence 67787665443
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.18 E-value=0.076 Score=44.00 Aligned_cols=225 Identities=10% Similarity=0.073 Sum_probs=109.7
Q ss_pred CCcEEEeeC-CC-----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC-----CCeEEEEEccC
Q 035621 7 CNEVILTSS-PE-----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG-----SGSVHLYNLWS 73 (387)
Q Consensus 7 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----d~~v~vw~~~~ 73 (387)
++.+++.|+ .+ ..+.+||+.+.+.... +..... -.+++...+..+.. |+. ...+.+||..+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~l~v~-----GG~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR-YVASVSLHDRIYVI-----GGYDGRSRLSSVECLDYTA 87 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEE-----CCBCSSCBCCCEEEEETTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc-cccEEEECCEEEEE-----cCCCCCccCceEEEEECCC
Confidence 456777777 33 3689999887754332 221111 12222233333322 332 24688999887
Q ss_pred CC---cccccCCCCC-eeeEEeccCCCEEEEecCC-----CcEEEEeCCCCcee--EEccCCCCCeEEEEEcCCCCEEEE
Q 035621 74 ST---PLHNIPVPEP-VAPLATTADGSYLFTGGLS-----GNVYAISVPKGDIL--RSFSAHDKPVSCLKISPDGSLLIS 142 (387)
Q Consensus 74 ~~---~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~ 142 (387)
.+ -...-..+.+ ....+...+++.++.|+.+ ..+.+||+.+.+-. ..+......-..+.+ ++++++.
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 165 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL 165 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE
T ss_pred CCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE
Confidence 76 3322221211 1111222366777777654 36889998776432 222222222223333 6677777
Q ss_pred EeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCC
Q 035621 143 GGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLN 212 (387)
Q Consensus 143 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~ 212 (387)
|+.+ ..+.+||+... ....+..+....... +++. .+ +.+++.|+.+ ..+.+||+.+
T Consensus 166 GG~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTG----------HWTNVTPMATKRSGA-GVAL-LN--DHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEE-ET--TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCCcccceEEEEeCCCC----------cEEeCCCCCcccccc-eEEE-EC--CEEEEEeCCCCCcccceEEEEeCCC
Confidence 7765 35778887321 111111111111111 1222 22 3677777764 4689999987
Q ss_pred CcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEecccc
Q 035621 213 GTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQ 254 (387)
Q Consensus 213 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 254 (387)
.+-...-.. +..-.+++.. +++.++.|+.+ ..+.+||..+.
T Consensus 232 ~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 232 DSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 653322111 1111122222 56666666654 34677777653
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.18 E-value=0.077 Score=44.03 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCcEEEeeCCC----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccCCC
Q 035621 7 CNEVILTSSPE----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWSST 75 (387)
Q Consensus 7 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~~~ 75 (387)
++.+++.|+.+ ..+..||+.+.+.... +..... -.+++...+..+.. |+.+ ..+.+||..+.+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVYMAGLVFAV-----GGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEE-----SCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEEECCEEEEE-----eCcCCCccccceEEECCCCCc
Confidence 34567777753 4588999887654332 211111 12222223333322 3322 458888887764
Q ss_pred cccccC--CCCCeeeEEeccCCCEEEEecCCC-----cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621 76 PLHNIP--VPEPVAPLATTADGSYLFTGGLSG-----NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDD 146 (387)
Q Consensus 76 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d 146 (387)
-...-. .+..-.+++ .-+++.++.|+.++ .+.+||+.+.+-... +.........+.+ ++++++.|+.+
T Consensus 89 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 165 (302)
T 2xn4_A 89 WTSVANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYD 165 (302)
T ss_dssp EEEECCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred eeeCCCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCC
Confidence 332222 211112222 23667777777553 578899877653322 2211222222333 56677777643
Q ss_pred -------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCCCc
Q 035621 147 -------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLNGT 214 (387)
Q Consensus 147 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~ 214 (387)
..+.+||+... ....+..+....... +++.. + +.+++.|+.+ ..+.+||+.+.+
T Consensus 166 ~~~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTN----------EWTYIAEMSTRRSGA-GVGVL-N--NLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTTTEECCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCCCccccEEEEEeCCCC----------cEEECCCCccccccc-cEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCC
Confidence 34778887431 111111111111111 22222 2 4777777764 368899998765
Q ss_pred EEEEEec--CCceeEEEeCCCCCeEEEEccCC-----cEEEEeccccc
Q 035621 215 HLSTVTF--PCAIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQS 255 (387)
Q Consensus 215 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 255 (387)
-...-.. +..-..++. .+++.++.|+.++ .+.+||..+..
T Consensus 232 W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3322111 111112222 2566777776543 47888887643
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.027 Score=47.42 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=104.2
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEc--C-CCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 96 SYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKIS--P-DGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
..+++++.||.|+-+|.++|+...+++.. ..++....-. + ++..++.. +.||.|..++.. .+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~------------~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH------------QGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT------------TEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC------------CCc
Confidence 47888999999999999999998887643 1222221100 1 22333333 589999988873 221
Q ss_pred ceEeeec----cCCCeEEEEEeeCC-------CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCce--------eEEEeC
Q 035621 171 MLQKFVA----HNDSVTAITCCIGS-------FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI--------MGLALD 231 (387)
Q Consensus 171 ~~~~~~~----~~~~i~~~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v--------~~~~~~ 231 (387)
....+.. ...++.. .-.|-- .+..+++|+.+|++...|+++|+.+..+....+. .|....
T Consensus 79 ~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~ 157 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE 157 (339)
T ss_dssp EEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred EEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence 1111111 1122221 000000 2468899999999999999999999999754321 111111
Q ss_pred -----CCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-cccccE-EEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 232 -----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-RHDGVV-VSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 232 -----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
..+..++.+..+..+.+.+ +++..... ....... .....+ ..-..+.|+.+ +.++.||.|.-+|..+
T Consensus 158 d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~----~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~ 231 (339)
T 2be1_A 158 KIKLQECENMIVIGKTIFELGIHS-YDGASYNV----TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDF 231 (339)
T ss_dssp -------CCEEEEEEEEEECEECC-TTSCCCCC----EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTT
T ss_pred ccccccCCCeEEEecceEEEEEEC-CCCCeEEE----ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCC
Confidence 1235677776666666555 22211000 0000000 000000 00001234666 4468899999999999
Q ss_pred ccEEE
Q 035621 305 RQVVM 309 (387)
Q Consensus 305 ~~~~~ 309 (387)
|+.+.
T Consensus 232 G~~~W 236 (339)
T 2be1_A 232 RIARW 236 (339)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 98876
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.09 E-value=0.094 Score=43.57 Aligned_cols=219 Identities=12% Similarity=0.053 Sum_probs=107.6
Q ss_pred CCeEEEEEccCCCcccccCCCC-CeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeE--EccCCCCCeEEEEEcC
Q 035621 63 SGSVHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILR--SFSAHDKPVSCLKISP 135 (387)
Q Consensus 63 d~~v~vw~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~ 135 (387)
...+.+||..+++-...-..+. .....+..-++..++.|+.+ ..+.+||+.+.+-.. .+.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-- 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence 3457777776654322211111 11112222366677777754 578899988765322 22222222223333
Q ss_pred CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--------
Q 035621 136 DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-------- 201 (387)
Q Consensus 136 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-------- 201 (387)
++++++.|+.+ ..+.+||.... ....+..+......- +++. .+ +.+++.|+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTE----------SWHTKPSMLTQRCSH-GMVE-AN--GLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEE-ET--TEEEEECCEESCTTTCE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCC----------ceEeCCCCcCCccee-EEEE-EC--CEEEEECCCCCCCCccc
Confidence 66777777765 45788887431 111111111111111 1122 22 366666654
Q ss_pred -CCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccc
Q 035621 202 -DCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 202 -d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
-..+.+||+.+.+-...-.. +..-.+++.. +++.++.|+.+ ..+.+||+.+.......... ...
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r 238 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-------WKG 238 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-------CCB
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-------CCc
Confidence 34588999887743322121 1111222222 56667776653 46888888775433221110 111
Q ss_pred ccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCccE
Q 035621 274 GVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQV 307 (387)
Q Consensus 274 ~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 307 (387)
.....+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 11222222 67788888754 4688899887643
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.98 E-value=0.14 Score=43.65 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=121.3
Q ss_pred ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEe---c----cCCCCCceeEEEcCc----cceeeeccccCC---CCCeE
Q 035621 2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAH---F----SGSRSPRRGLTFAGK----PFIAASHISPTT---GSGSV 66 (387)
Q Consensus 2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---~----~~~~~~v~~~~~~~~----~~~~~~~~~~~~---~d~~v 66 (387)
|+|.|+|+ ++++ ...|.|++++. .+..... + .........++++|+ +.+......... ....|
T Consensus 23 i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 23 LAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 57899999 6655 45689999985 3432211 1 112334688999984 332222111000 02356
Q ss_pred EEEEccCCC-------c-ccccCC----CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCCc-----
Q 035621 67 HLYNLWSST-------P-LHNIPV----PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKGD----- 116 (387)
Q Consensus 67 ~vw~~~~~~-------~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~----- 116 (387)
..|++.... . +..+.. ......++|.|||.+.++-+. .|.|.-++....-
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 666654321 0 111111 122467999999965555432 2457667754320
Q ss_pred -------eeEEc-cCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCcccc----cCCC---------------CCCC
Q 035621 117 -------ILRSF-SAHDKPVSCLKISPDGSLLISGGDD--GVIATVPIFQLVD----EHTD---------------DKNP 167 (387)
Q Consensus 117 -------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~----~~~~---------------~~~~ 167 (387)
....+ .++ .....++|+|+...|.++... +.=.|.-+..... .... ....
T Consensus 181 f~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~ 259 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG 259 (353)
T ss_dssp TTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTT
T ss_pred CcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCC
Confidence 11111 123 346789999943344444332 1112222211100 0000 0000
Q ss_pred CccceEeeeccCCCeEEEEEeeCC-----CCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEE
Q 035621 168 DDLMLQKFVAHNDSVTAITCCIGS-----FNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFF 238 (387)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 238 (387)
...+...+..| .....+.+.... .+.++++.-..+.|...++..++...... ....+..+++.|||.+++
T Consensus 260 ~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv 338 (353)
T 2g8s_A 260 TEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYV 338 (353)
T ss_dssp SCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEE
T ss_pred ccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEE
Confidence 11223333333 356677775421 35777777777888888887665443322 235789999999998666
Q ss_pred EEc-cCCcEE
Q 035621 239 AAG-SDGLIY 247 (387)
Q Consensus 239 ~~~-~dg~i~ 247 (387)
+.. .+|.|+
T Consensus 339 ~td~~~g~I~ 348 (353)
T 2g8s_A 339 LTDESSGELL 348 (353)
T ss_dssp EECSTTEEEE
T ss_pred EEeCCCCEEE
Confidence 543 344443
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.97 E-value=0.14 Score=43.60 Aligned_cols=235 Identities=13% Similarity=0.066 Sum_probs=118.8
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEecc---CCCCCceeEEEcCc----cceeeeccccCCCC----CeEEEE
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFS---GSRSPRRGLTFAGK----PFIAASHISPTTGS----GSVHLY 69 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~~~~~d----~~v~vw 69 (387)
++|.|+|+++++- .+|.|++++ .+++ .+..+. ........|+++|+ +.+....-. ...+ ..|..|
T Consensus 34 ia~~pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~-~~~~~~~~~~v~r~ 110 (354)
T 3a9g_A 34 IAPLGGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY-FAEGGHIRNRVIRG 110 (354)
T ss_dssp EEEEETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE-ECGGGCEEEEEEEE
T ss_pred EEEcCCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec-cCCCCCcceEEEEE
Confidence 5789999866664 459999998 4554 222221 22345789999986 332221100 0112 567777
Q ss_pred EccCCC-------cc-cccCC--CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC---------ce
Q 035621 70 NLWSST-------PL-HNIPV--PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG---------DI 117 (387)
Q Consensus 70 ~~~~~~-------~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---------~~ 117 (387)
+..... .+ ..+.. ......++|.|||.+.++-+. .|.|.-++.... ..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~ 190 (354)
T 3a9g_A 111 RLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP 190 (354)
T ss_dssp EECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC
T ss_pred EECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc
Confidence 765431 11 11211 123567999999986666432 245666665321 01
Q ss_pred eEEccCCCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEeCCcc--cccCCCCC--CCCccceEeeeccCCCeEEEEEee
Q 035621 118 LRSFSAHDKPVSCLKISP-DGSLLISGGDDG---VIATVPIFQL--VDEHTDDK--NPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
+.. .++. ....++|+| +++++++-.... .|.+..-... |....... .....++..+.........+++..
T Consensus 191 i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~ 268 (354)
T 3a9g_A 191 IWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVH 268 (354)
T ss_dssp EEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECC
T ss_pred EEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEEC
Confidence 111 1333 346899999 566444432221 1333221100 00000000 001122233311223566777732
Q ss_pred -----CCCCceEEEEeCCCcEEEEeCCCC-cEE--EEEec--CCceeEEEeCCCCCeEEEEc
Q 035621 190 -----GSFNSIIISCSMDCTCKFWRLLNG-THL--STVTF--PCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 190 -----~~~~~~l~s~~~d~~i~iwd~~~~-~~~--~~~~~--~~~v~~~~~~~~~~~l~~~~ 241 (387)
..++.++++.-..+.|...++... +.. ..+-. ...+..+++.|||.++++..
T Consensus 269 g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 269 GDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp SSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 123567777666778888888753 322 22221 35688999999997666654
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.93 E-value=0.14 Score=42.69 Aligned_cols=225 Identities=15% Similarity=0.094 Sum_probs=107.8
Q ss_pred CCCcEEEeeCCC----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC---------CCeEEEEE
Q 035621 6 PCNEVILTSSPE----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG---------SGSVHLYN 70 (387)
Q Consensus 6 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------d~~v~vw~ 70 (387)
-++.+++.|+.+ ..+.+||+.+.+.... +..... -.+++...+..+.. |+. ...+.+||
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS-GLAGCVVGGLLYAV-----GGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEE-----CCEEEETTEEEECCCEEEEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc-cceEEEECCEEEEE-----CCCcCCCCCCeecceEEEEC
Confidence 356677777732 3689999887654332 111111 11222223332222 333 24578888
Q ss_pred ccCCCcccccCCC--CCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEE
Q 035621 71 LWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLI 141 (387)
Q Consensus 71 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~ 141 (387)
..+.+-...-..+ ..-.+++ .-+++.++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++++++
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCCeEeECCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 8776433222211 1111222 2266777777643 3688999877643221 2211222223333 567777
Q ss_pred EEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCC
Q 035621 142 SGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLL 211 (387)
Q Consensus 142 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~ 211 (387)
.|+.+ ..+.+||+.... ...+..+....... +++.. + +.+++.|+.+ ..+.+||+.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNE----------WRMITAMNTIRSGA-GVCVL-H--NCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSSBCCCEEEEETT
T ss_pred EeCCCCCCcCceEEEEeCCCCe----------EeeCCCCCCccccc-eEEEE-C--CEEEEEeCCCCCCccceEEEEeCC
Confidence 77754 457888874321 11111111111111 12222 2 4677777764 468999988
Q ss_pred CCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEecccc
Q 035621 212 NGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQ 254 (387)
Q Consensus 212 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 254 (387)
+.+-...-. .+..-.+++.. +++.++.|+.+ ..+.+||+.+.
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 764322111 11111222222 55666666643 34667776653
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.87 E-value=0.15 Score=42.28 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=109.6
Q ss_pred CcEEEeeCC--CCcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC----CCeEEEEEccCCCcccc
Q 035621 8 NEVILTSSP--EGPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG----SGSVHLYNLWSSTPLHN 79 (387)
Q Consensus 8 ~~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----d~~v~vw~~~~~~~~~~ 79 (387)
+.+++.|+. ...+.+||..+.+-... +....... +++...+..+.. |+. -..+.+||..+++-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~-----GG~~~~~~~~~~~~d~~~~~W~~~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFWDNVVYIL-----GGSQLFPIKRMDCYNVVKDSWYSK 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEETTEEEEE-----CCBSSSBCCEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEECCEEEEE-----eCCCCCCcceEEEEeCCCCeEEEC
Confidence 446667764 35799999987654322 22111112 222223333222 333 36788899877653332
Q ss_pred cCCCCC-eeeEEeccCCCEEEEecCC------CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeC-----
Q 035621 80 IPVPEP-VAPLATTADGSYLFTGGLS------GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGD----- 145 (387)
Q Consensus 80 ~~~~~~-v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----- 145 (387)
-..+.+ ....+..-+++.++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++++++.|+.
T Consensus 86 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 86 LGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV 163 (306)
T ss_dssp ECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred CCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence 222211 1111222366777777755 4689999887653322 2111122222333 5666777764
Q ss_pred ----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCCCcEE
Q 035621 146 ----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLNGTHL 216 (387)
Q Consensus 146 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 216 (387)
-..+.+||+... ....+..+......- +++.. + +.+++.|+.+ ..+.+||+.+.+-.
T Consensus 164 ~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~~-~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATE----------TWTELCPMIEARKNH-GLVFV-K--DKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TCEECCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred cccccceEEEeCCCCC----------eEEECCCccchhhcc-eEEEE-C--CEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 344778887331 111111111111111 12222 2 3677777654 35889998876422
Q ss_pred EE--EecCC-ceeEEEeCCCCCeEEEEccC-----CcEEEEeccccc
Q 035621 217 ST--VTFPC-AIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQS 255 (387)
Q Consensus 217 ~~--~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 255 (387)
.. +..+. ....+.+ +++.++.|+.+ ..+.+||..+..
T Consensus 230 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 230 MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 21 11111 1222223 56777777754 457888877643
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.83 E-value=0.16 Score=43.31 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=20.0
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCccEEEEeec
Q 035621 283 NEGKNLVSAAEDG------SVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 283 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~ 313 (387)
.++++++.|+.++ .|.++++++++.+.....
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 4678888888653 466678888887765543
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.70 E-value=0.32 Score=43.54 Aligned_cols=253 Identities=13% Similarity=0.078 Sum_probs=143.3
Q ss_pred ccccCCCCCeEEEEEccCCCcccccCCC--------------------------CCeee--EEec---cCCCEEEEec-C
Q 035621 56 HISPTTGSGSVHLYNLWSSTPLHNIPVP--------------------------EPVAP--LATT---ADGSYLFTGG-L 103 (387)
Q Consensus 56 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------------------~~v~~--~~~~---~~~~~l~~~~-~ 103 (387)
.+.||+..|.|+|+-+.+++.++.+..- +.... +++. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3556899999999999988877665510 01111 2222 2577888776 4
Q ss_pred CCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621 104 SGNVYAISVPKGDILRSFS-AHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180 (387)
Q Consensus 104 dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (387)
+..|-..++...++-..+. .....+..++|- |+..+++.+++...= +=+ +.... .............+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P-~pn--dg~~~-~~~~~~~y~~f~~iD~~tm 227 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIP-HPN--DGKVF-DLQDENSYTMYNAIDAETM 227 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEE-SSC--SSSCC-CTTSTTEEEEEEEEETTTC
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeecc-CCC--CCccc-ccCChhhceEEEEEcCCcc
Confidence 5578888888777655544 345678899986 688888888764211 000 00000 0000000011111111111
Q ss_pred CeE----------EEEEeeCCCCceEEEEeCC---------------------------------------C-cEEEEeC
Q 035621 181 SVT----------AITCCIGSFNSIIISCSMD---------------------------------------C-TCKFWRL 210 (387)
Q Consensus 181 ~i~----------~~~~~~~~~~~~l~s~~~d---------------------------------------~-~i~iwd~ 210 (387)
.|. .....++ +.+.++.+.+ | .+.+.|.
T Consensus 228 ~v~~Qv~v~gnld~~~~~~~--g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 228 EMAFQVIVDGNLDNTDADYT--GRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp SEEEEEEESSCCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred EEEEEEEcCCChhhcCCCCC--CCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 110 1111111 2333333211 1 2555565
Q ss_pred CC----C-cEEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccc----cccceeEeecccccccEEEEE
Q 035621 211 LN----G-THLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQM----HKGQELVTLANRHDGVVVSVM 280 (387)
Q Consensus 211 ~~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~ 280 (387)
+. + ...+.+..+.....+..+|||+++++++. +.++.++|+........ .....+.... .-.-.....+
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~ 384 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTT 384 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEE
Confidence 54 2 23455556777888999999999999877 88999999986322111 0011111111 1244578899
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCc----------cEEEEeeccc
Q 035621 281 MMNEGKNLVSAAEDGSVYIWEIEKR----------QVVMVLKNEL 315 (387)
Q Consensus 281 ~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~ 315 (387)
|.++|....|--.|..|.-|++... ..+.++..|.
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 9999966667778999999999874 5666676553
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.68 E-value=0.22 Score=41.42 Aligned_cols=218 Identities=11% Similarity=0.066 Sum_probs=105.7
Q ss_pred CeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEEEecC----C-----CcEEEEeCCCCceeEE--ccCCCCCeEE
Q 035621 64 GSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLFTGGL----S-----GNVYAISVPKGDILRS--FSAHDKPVSC 130 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~ 130 (387)
..+.+||..+.+-...-..+. .-.+++ ..++.+++.|+. + ..+.+||+.+.+-... +.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 457788876664332211111 111222 236667777765 2 3688999877643221 2211222223
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---
Q 035621 131 LKISPDGSLLISGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD--- 202 (387)
Q Consensus 131 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--- 202 (387)
+.+ ++++++.|+.+ ..+.+||+.... ...+..+......- +++.. + +.+++.|+.+
T Consensus 118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDE----------WHLVAPMLTRRIGV-GVAVL-N--RLLYAVGGFDGTN 181 (308)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSC
T ss_pred EEE--CCEEEEEcCCCCCcccccEEEECCCCCe----------EeECCCCCccccce-EEEEE-C--CEEEEEeCCCCCC
Confidence 333 56777777644 357778773311 01111111111111 12222 2 4677777654
Q ss_pred --CcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccc
Q 035621 203 --CTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHD 273 (387)
Q Consensus 203 --~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
..+.+||+.+.+-...-. .+..-.+++.. +++.++.|+.+ ..+.+||+.+.......... ...
T Consensus 182 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-------~~r 253 (308)
T 1zgk_A 182 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-------HRR 253 (308)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-------SCC
T ss_pred cCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-------CCc
Confidence 458899987764322111 11111222222 56677777654 56889998775433221110 011
Q ss_pred ccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCccEE
Q 035621 274 GVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQVV 308 (387)
Q Consensus 274 ~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 308 (387)
.....+. -++++++.|+.+ ..+.+||+.+.+-.
T Consensus 254 ~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 254 SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 1111222 266777887754 35788888776543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.57 E-value=0.26 Score=41.04 Aligned_cols=220 Identities=7% Similarity=-0.017 Sum_probs=105.1
Q ss_pred CeEEEEEccCCCccc-ccCCC-CCeeeEEeccCCCEEEEecC----C-------CcEEEEeCCCCceeEE--ccCCCCCe
Q 035621 64 GSVHLYNLWSSTPLH-NIPVP-EPVAPLATTADGSYLFTGGL----S-------GNVYAISVPKGDILRS--FSAHDKPV 128 (387)
Q Consensus 64 ~~v~vw~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~--~~~~~~~v 128 (387)
..+..||..+++-.. .++.+ ..........++..++.|+. + ..+..||..+.+-... +.......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 568888887765332 11111 12222333457777778873 1 1277889877653221 11111111
Q ss_pred EEEEEcCCCCEEEEEeCC--------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe
Q 035621 129 SCLKISPDGSLLISGGDD--------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS 200 (387)
Q Consensus 129 ~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 200 (387)
..+.+ +++.++.|+.+ ..+.+||..... ...+..+......- +++. .+ +.+++.|+
T Consensus 93 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG 156 (315)
T 4asc_A 93 GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK----------WGESDPLPYVVYGH-TVLS-HM--DLVYVIGG 156 (315)
T ss_dssp EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEE-ET--TEEEEECC
T ss_pred eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc----------EeECCCCCCcccce-eEEE-EC--CEEEEEeC
Confidence 22222 56677777642 357788874310 01111111111111 1222 22 36777776
Q ss_pred C-C-----CcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCC-----cEEEEeccccccccccccceeEe
Q 035621 201 M-D-----CTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQSRQQMHKGQELVT 267 (387)
Q Consensus 201 ~-d-----~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~ 267 (387)
. + ..+.+||+.+.+-...-. .+..-.+++.. +++.++.|+.++ .+.+||..+.........
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----- 230 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF----- 230 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC-----
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCC-----
Confidence 6 2 468899988764322111 11111222222 567777777654 477888876533222110
Q ss_pred ecccccccEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCccEEE
Q 035621 268 LANRHDGVVVSVMMMNEGKNLVSAAEDG--------------SVYIWEIEKRQVVM 309 (387)
Q Consensus 268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~ 309 (387)
.........+. -++++++.|+.++ .+.+||+.+.+-..
T Consensus 231 --p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 231 --PQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp --SSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred --CCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 01111111222 2567777777532 36788887765443
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.49 E-value=0.58 Score=44.00 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCCcEEEeeCCC----CcEEEEeCCCCceeEec-c-------CCCCCceeEEEc-CccceeeeccccCCC------CCeE
Q 035621 6 PCNEVILTSSPE----GPITAYNPSSGAILAHF-S-------GSRSPRRGLTFA-GKPFIAASHISPTTG------SGSV 66 (387)
Q Consensus 6 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~-~~~~~~~~~~~~~~~------d~~v 66 (387)
.++.+++.|+.+ ..+.+||+.+++....- . ........+.+. .+..+.. |+. -..+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~-----GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLI-----GGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEE-----CCBSSTTCBCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEE-----cCCCCCCCccccE
Confidence 356677777743 46888998876543322 1 111112223332 3333322 332 2357
Q ss_pred EEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCC--cEEEEeCCCCceeEE-----ccCCCCCeEEEEEcCC-
Q 035621 67 HLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSG--NVYAISVPKGDILRS-----FSAHDKPVSCLKISPD- 136 (387)
Q Consensus 67 ~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~~- 136 (387)
.+||..+.+-...-..+ ..-.+++...+++.++.|+.++ .+.+||+.+.+-... +........++.+..+
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 88888775433222222 2222333334788888887654 799999877653221 1112222334555554
Q ss_pred CCEEEEEeC--C-----CcEEEEeCC
Q 035621 137 GSLLISGGD--D-----GVIATVPIF 155 (387)
Q Consensus 137 ~~~l~~~~~--d-----g~i~iwd~~ 155 (387)
+++++.|+. + ..+.+||+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEcc
Confidence 667777775 2 357888874
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.48 E-value=0.34 Score=41.26 Aligned_cols=237 Identities=12% Similarity=0.032 Sum_probs=116.8
Q ss_pred CceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCc---ccccC-----CCCCeeeEEeccC---CCEEEEecC----
Q 035621 40 PRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTP---LHNIP-----VPEPVAPLATTAD---GSYLFTGGL---- 103 (387)
Q Consensus 40 ~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~---- 103 (387)
....|+|.|++. +.. +...|.|++++.. +.. +..+. .......++++|+ +..|++...
T Consensus 19 ~P~~i~~~pdG~~l~V-----~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-----TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp SEEEEEECSTTCCEEE-----EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CcEEEEEcCCCCEEEE-----EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 467899999765 443 2346889988853 321 11111 2345788999996 555555432
Q ss_pred ----CCcEEEEeCCCC--c-----ee-EEccC---CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCC
Q 035621 104 ----SGNVYAISVPKG--D-----IL-RSFSA---HDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIF 155 (387)
Q Consensus 104 ----dg~i~i~d~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~ 155 (387)
...|..|++... . .+ ..+.. .......|+|.|||.+.++.+.. |.|.-++..
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666433 1 11 11211 11224679999999755554332 345555542
Q ss_pred cccccCCCCCCC--CccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCCC-------------------
Q 035621 156 QLVDEHTDDKNP--DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLNG------------------- 213 (387)
Q Consensus 156 ~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~------------------- 213 (387)
........-... ....+.. .++ .....++|.|.. +.++++-.. ++.=.|.-+..+
T Consensus 173 G~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~-g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWS-NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTT-TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCC-CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 110000000000 0111111 223 235678888732 344443221 111112111111
Q ss_pred ------------cEEEEEecCCceeEEEeCC-------CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc
Q 035621 214 ------------THLSTVTFPCAIMGLALDP-------TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG 274 (387)
Q Consensus 214 ------------~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 274 (387)
.++..+.+...+..++|.. ++.++++.-..+.|...++...... ....++.....
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~ 323 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT------EDGRILTDRGQ 323 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE------EEEEESGGGCC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe------eeEEcccCCCC
Confidence 1122333344567777764 4566666666778887777642111 11112223345
Q ss_pred cEEEEEEecCCCEEEEE
Q 035621 275 VVVSVMMMNEGKNLVSA 291 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~s~ 291 (387)
.+..+++.|||.++++.
T Consensus 324 rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 324 RIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEECTTSCEEEEE
T ss_pred ceeEEEECCCCcEEEEE
Confidence 78999999999866654
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.42 E-value=0.23 Score=38.65 Aligned_cols=180 Identities=12% Similarity=-0.048 Sum_probs=87.4
Q ss_pred CCEEEEecCCCcEEEEeCCCCc------eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 95 GSYLFTGGLSGNVYAISVPKGD------ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 95 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
...|+....| +++.=.+..+. ....+.. -=..+..++|+|++.+.++ .+|.++-.+..... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~-------~~ 73 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHD-------ND 73 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCST-------TC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCC-------cc
Confidence 3455555555 55555554443 1122211 1236789999999986666 66765554431100 00
Q ss_pred Cc-cceEeee--ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE------EEEec--CCceeEEEeCCCCCe
Q 035621 168 DD-LMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL------STVTF--PCAIMGLALDPTETD 236 (387)
Q Consensus 168 ~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~--~~~v~~~~~~~~~~~ 236 (387)
.. ..-..+- +-. .-.++.|.+++ .+.++ .||.|.-++-.+...- ..+.. =..+..+.+.|+|.+
T Consensus 74 ~W~~s~t~IG~~Gw~-~F~a~~fD~~G--~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 74 NWMGRAKKIGNGGWN-QFQFLFFDPNG--YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp CHHHHCEEEECSCGG-GCSEEEECTTS--CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred cccccccEecccccc-cceEEEECCCC--CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence 00 0001110 111 13567776663 55555 5698887775432111 11111 146789999999988
Q ss_pred EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG 295 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 295 (387)
.++. |+.++-................. +-...-..-..+.|.+++.+.+.. +|
T Consensus 149 yav~--dg~lyr~~~P~~~~~~wl~~~~~--~g~~g~~~yr~l~f~~~G~l~~v~--~g 201 (236)
T 1tl2_A 149 YAVH--GQQFYKALPPVSNQDNWLARATK--IGQGGWDTFKFLFFSSVGTLFGVQ--GG 201 (236)
T ss_dssp EEEE--TTEEEEECCCSSTTCCHHHHCEE--EESSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred EEEe--CCcEEecCCCCCCCcccccccce--eccCCcceEEEEEECCCCcEEEEe--CC
Confidence 8777 77765433322111110000011 111222234446678877766655 55
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.34 E-value=0.084 Score=41.05 Aligned_cols=146 Identities=11% Similarity=-0.012 Sum_probs=79.0
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee------EEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL------RSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ 156 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 156 (387)
.+..++|+|+|.+.++ .+|.++-.+..+.+.. ..+- +.. ...++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999999886555 6788877776553221 1111 111 1478999999987777 569887665411
Q ss_pred ccccCCCCCCCCc--cceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------EEEEEe-c-CCcee
Q 035621 157 LVDEHTDDKNPDD--LMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------HLSTVT-F-PCAIM 226 (387)
Q Consensus 157 ~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~-~~~v~ 226 (387)
. ..... .....-..--..+..|.+.|++ .+.+ .. |+.++-....+.. ....+. . -....
T Consensus 117 ~-------~~~~Wl~~a~~vg~~gw~~~~~lff~p~G--~Lya-v~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 117 S-------DTDNWIARATEVGSGGWSGFKFLFFHPNG--YLYA-VH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp S-------TTCCHHHHSEEEECSSGGGEEEEEECTTS--CEEE-EE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred C-------CCCceeccccEeccCCCCceEEEEECCCc--eEEE-Ee-CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 0 00000 0000001111467888888874 4444 44 7775433322211 111111 1 12344
Q ss_pred EEEeCCCCCeEEEEccCCcEEE
Q 035621 227 GLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 227 ~~~~~~~~~~l~~~~~dg~i~i 248 (387)
.+.|.+++...++. +|.++-
T Consensus 186 ~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp EEEECTTSCEEEEE--TTEEEE
T ss_pred EEEECCCCcEEEEe--CCeEEe
Confidence 56788888777776 775543
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.21 E-value=0.43 Score=39.72 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=97.5
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeE-eccCC-CCCceeEEEcCccceeeecc-cc-CCC----CCeEEEEEccCCCccccc
Q 035621 9 EVILTSSPEGPITAYNPSSGAILA-HFSGS-RSPRRGLTFAGKPFIAASHI-SP-TTG----SGSVHLYNLWSSTPLHNI 80 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~-~~-~~~----d~~v~vw~~~~~~~~~~~ 80 (387)
.+++.|+ ..+.+||+.+++-.. .+... ...-.+++...+..+...-. .. ... ...+..||..+++-...-
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 3556666 579999998877532 22211 11122333333333332210 00 001 123777888776532222
Q ss_pred CCCCCe--eeEEeccCCCEEEEecCC--------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeC-C-
Q 035621 81 PVPEPV--APLATTADGSYLFTGGLS--------GNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGD-D- 146 (387)
Q Consensus 81 ~~~~~v--~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d- 146 (387)
..+.+- .+++. -+++.++.|+.+ ..+.+||+.+.+-.. .+......-..+. -++++++.|+. +
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 222211 12222 256667777632 368999987764322 1221122222222 35667777776 2
Q ss_pred ----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEE
Q 035621 147 ----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLS 217 (387)
Q Consensus 147 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~ 217 (387)
..+.+||+.... ...+..+......- +++.. + +.+++.|+.++ .+.+||+.+.+-..
T Consensus 161 ~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE----------WKELAPMQTARSLF-GATVH-D--GRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp SCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CcccceEEEEeCCCCe----------EEECCCCCCchhce-EEEEE-C--CEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 457888874320 11111111111111 12222 2 36777777654 58889988764332
Q ss_pred EEe--cCCceeEEEeCCCCCeEEEEcc
Q 035621 218 TVT--FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 218 ~~~--~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
.-. .+..-.+++.. +++.++.|+.
T Consensus 227 ~~~~p~~r~~~~~~~~-~~~l~v~GG~ 252 (315)
T 4asc_A 227 FEAFPQERSSLSLVSL-VGTLYAIGGF 252 (315)
T ss_dssp ECCCSSCCBSCEEEEE-TTEEEEEEEE
T ss_pred CCCCCCcccceeEEEE-CCEEEEECCc
Confidence 211 11111222222 4566666665
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.19 E-value=0.45 Score=39.68 Aligned_cols=220 Identities=10% Similarity=0.079 Sum_probs=103.3
Q ss_pred eEEEEEccCCCccc-ccCCC-CCeeeEEeccCCCEEEEecC----CC-------cEEEEeCCCCceeEE--ccCCCCCeE
Q 035621 65 SVHLYNLWSSTPLH-NIPVP-EPVAPLATTADGSYLFTGGL----SG-------NVYAISVPKGDILRS--FSAHDKPVS 129 (387)
Q Consensus 65 ~v~vw~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--~~~~~~~v~ 129 (387)
.+..||..+++-.. ....+ ..........++..++.|+. ++ .+..||..+.+-... +........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 37788887765432 11111 11222333456778888873 12 177888876653221 111111222
Q ss_pred EEEEcCCCCEEEEEeCC-------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-
Q 035621 130 CLKISPDGSLLISGGDD-------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM- 201 (387)
Q Consensus 130 ~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~- 201 (387)
.+.+ ++++++.|+.+ ..+.+||+... ....+..+......- +++. .+ +.+++.|+.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~ 168 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA----------KWSEVKNLPIKVYGH-NVIS-HN--GMIYCLGGKT 168 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT----------EEEEECCCSSCEESC-EEEE-ET--TEEEEECCEE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC----------CEeECCCCCCccccc-EEEE-EC--CEEEEEcCCC
Confidence 2233 56777777754 24677777321 011111110000011 1222 22 366676664
Q ss_pred -----CCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeec
Q 035621 202 -----DCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLA 269 (387)
Q Consensus 202 -----d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~ 269 (387)
-..+.+||+.+.+-...-. .+..-.+++. -+++.++.|+.+ ..+.+||+.+..........
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------ 241 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP------ 241 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS------
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC------
Confidence 2358999998765332211 1211122222 256677777653 34677887764432221110
Q ss_pred ccccccEEEEEEecCCCEEEEEeCC--------------CcEEEEECCCccEEEE
Q 035621 270 NRHDGVVVSVMMMNEGKNLVSAAED--------------GSVYIWEIEKRQVVMV 310 (387)
Q Consensus 270 ~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~ 310 (387)
........+ ..++++++.|+.+ ..+.+||+.+.+-...
T Consensus 242 -~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 242 -QERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp -SCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred -CcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 111111112 2356777777654 3577888887655433
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.10 E-value=0.51 Score=40.06 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=43.8
Q ss_pred CCcEEEeeCC-CCcEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCC----------CCeEEEEEc
Q 035621 7 CNEVILTSSP-EGPITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTG----------SGSVHLYNL 71 (387)
Q Consensus 7 ~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------d~~v~vw~~ 71 (387)
++.+++.|+. ...+.+||+.+ .+. +..+......-.+++...+..+.. |+. -..+.+||.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVF-----GGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEE-----CCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEE-----cCCCCCCCccceeeccEEEEeC
Confidence 5666666653 35688999863 322 222221111122233333333322 333 246888998
Q ss_pred cCCCcccccCCC-CC-eeeEEeccCCCEEEEecCC
Q 035621 72 WSSTPLHNIPVP-EP-VAPLATTADGSYLFTGGLS 104 (387)
Q Consensus 72 ~~~~~~~~~~~~-~~-v~~~~~~~~~~~l~~~~~d 104 (387)
.+.+-...-... .+ ....+...++++++.|+.+
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 776433222211 22 1121222567777888754
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.93 E-value=0.41 Score=42.33 Aligned_cols=119 Identities=11% Similarity=0.137 Sum_probs=65.7
Q ss_pred eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---------CCceeEEEeCCC---CCeEEE
Q 035621 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---------PCAIMGLALDPT---ETDFFA 239 (387)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~l~~ 239 (387)
+..+...-.....++|.|++ +++++-...+.|++++..+++....... ......++|+|+ +..|++
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp EEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred EEEEECCCCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 33343334456789998874 6666654445798888665554322221 245679999996 556655
Q ss_pred Ecc-------------CCcEEEEeccccccccccccceeEe-ecccccccEEEEEEecCCCEEEEEeC
Q 035621 240 AGS-------------DGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGVVVSVMMMNEGKNLVSAAE 293 (387)
Q Consensus 240 ~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~ 293 (387)
+.. ...|..++......... ....+.. +..........|+|.|||.++++.+.
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLE-KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEE-EEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcC-CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 543 23566665543211100 0111221 11121234789999999997776543
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.89 E-value=0.61 Score=38.62 Aligned_cols=179 Identities=11% Similarity=0.093 Sum_probs=96.0
Q ss_pred EEeccCCCEEEEecCC--------------CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 035621 89 LATTADGSYLFTGGLS--------------GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG--DDGVIATV 152 (387)
Q Consensus 89 ~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw 152 (387)
--++++|++|+..... ..|+..++..++... +.. .. +..|++++++|+-.. .++.-.||
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457788888766532 367777776665333 221 11 236777888888765 34444444
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD 231 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 231 (387)
.+.. .+.....+..+.. ..+.+.+ +.|+ +......|...++..+.....+. .... ..++
T Consensus 133 ~~~~-----------dGs~~~~lt~~~~----~~~~~~g--~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~ 192 (302)
T 3s25_A 133 RIRI-----------DGEEKKKIKNHYL----FTCNTSD--RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVV 192 (302)
T ss_dssp EEET-----------TSCCCEEEESSCC----CCSEEET--TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEE
T ss_pred EEEC-----------CCCCeEEEeCCCc----eEeeEEC--CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceee
Confidence 3310 2222333333322 3445664 4444 43336788888887665443333 2222 3456
Q ss_pred CCCCeEEEEccC--CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCcc
Q 035621 232 PTETDFFAAGSD--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQ 306 (387)
Q Consensus 232 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~ 306 (387)
|++.+|+-.... ..|..-++...... .+. ...+ ..|+|++++|.-+. ..+.|..-+++...
T Consensus 193 P~g~~iy~t~~~~~~~I~~~~ldG~~~~---------~Lt---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 193 LDDTNVYYMDVNRDNAIVHVNINNPNPV---------VLT---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEECSSSCCCE---------ECS---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ecCCEEEEEEcCCCcEEEEEECCCCCeE---------EEe---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 888888876543 35555555542211 111 1122 23778888877543 34567777776543
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.76 E-value=0.76 Score=38.81 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=121.3
Q ss_pred ccccCCCcEEEeeCCCCcEEEEeCCCCce--eEec----cCCCCCceeEEEcCc----cceeeeccccCCCCCeEEEEEc
Q 035621 2 LHHLPCNEVILTSSPEGPITAYNPSSGAI--LAHF----SGSRSPRRGLTFAGK----PFIAASHISPTTGSGSVHLYNL 71 (387)
Q Consensus 2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~~~~~~~~~~~d~~v~vw~~ 71 (387)
|+|.|||+++++-...|.|++++..+++. +..+ .........|+++|+ +.+... .+...++.|.-|.+
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~--yt~~~~~~v~R~~~ 114 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY--FTSASDNRIVRMLY 114 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE--EECSSSEEEEEEEB
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE--EecCCCCEEEEEEe
Confidence 57899999888876689999998765553 2222 123445789999984 222211 11234556666666
Q ss_pred cCCC----cc-------cccC--CCCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC---------c
Q 035621 72 WSST----PL-------HNIP--VPEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG---------D 116 (387)
Q Consensus 72 ~~~~----~~-------~~~~--~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---------~ 116 (387)
..+. .+ ..+. .......+.|.|||.+.++.+. .|.|.-++.... .
T Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~ 194 (347)
T 3das_A 115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS 194 (347)
T ss_dssp CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC
T ss_pred CCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC
Confidence 5421 10 0111 1123567999999987766442 355555565322 1
Q ss_pred eeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCcc----cccCCCC--CCCCccceEeeeccCCCeEEEEEee
Q 035621 117 ILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQL----VDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI 189 (387)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (387)
.+.. .+|. ....++|+|++.+.++= +.|+.=.+--+... |...... ......++..+..+......++|..
T Consensus 195 ~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~ 272 (347)
T 3das_A 195 PVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE 272 (347)
T ss_dssp CEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET
T ss_pred eEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc
Confidence 1111 2444 34689999987755443 22322222222111 0000000 0011223344433333556677652
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCcEE---EEE-e-cCCceeEEEeCCCCCeEEEEc
Q 035621 190 GSFNSIIISCSMDCTCKFWRLLNGTHL---STV-T-FPCAIMGLALDPTETDFFAAG 241 (387)
Q Consensus 190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~-~-~~~~v~~~~~~~~~~~l~~~~ 241 (387)
+.+++..-..+.|....+...... ..+ . ....+..++..|||.++++..
T Consensus 273 ---g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 273 ---GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ---TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ---CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 366666666667766666544321 112 1 235678888888886665544
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=0.93 Score=37.71 Aligned_cols=137 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred cEEEeeCCCCcEEEEeCCCCceeEe-ccC-CCCCceeEEEcCccceeeeccccCCC----C-------CeEEEEEccCCC
Q 035621 9 EVILTSSPEGPITAYNPSSGAILAH-FSG-SRSPRRGLTFAGKPFIAASHISPTTG----S-------GSVHLYNLWSST 75 (387)
Q Consensus 9 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~----d-------~~v~vw~~~~~~ 75 (387)
.+++.|+. .+..||+.+.+.... +.. ....-.+++...+..+.. |+. + ..+..||..+.+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVV-----GGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEE-----ESSCC-------CCCBEEEEEETTTTE
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEE-----CCcccCccccCCCccccEEEEeCCCCc
Confidence 45666664 489999988775431 111 111122333333333332 221 1 127778877664
Q ss_pred cccccC--CCCCeeeEEeccCCCEEEEecCC-------CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEe
Q 035621 76 PLHNIP--VPEPVAPLATTADGSYLFTGGLS-------GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 76 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 144 (387)
-...-. .+..-.+++. -+++.++.|+.+ ..+.+||+.+.+-... +......-..+. .++++++.|+
T Consensus 90 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 166 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGG 166 (318)
T ss_dssp EEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECC
T ss_pred EEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcC
Confidence 332222 2211122222 256677777753 2588899877653322 111111112222 3666777776
Q ss_pred CC------CcEEEEeCC
Q 035621 145 DD------GVIATVPIF 155 (387)
Q Consensus 145 ~d------g~i~iwd~~ 155 (387)
.+ ..+.+||+.
T Consensus 167 ~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp EESSSCBCCCEEEEETT
T ss_pred CCCCCCccceEEEEcCC
Confidence 42 358888874
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.32 E-value=2 Score=40.79 Aligned_cols=264 Identities=15% Similarity=0.123 Sum_probs=134.0
Q ss_pred EEeeCCCCcEEEEeCCCCceeEec---c-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cC----
Q 035621 11 ILTSSPEGPITAYNPSSGAILAHF---S-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IP---- 81 (387)
Q Consensus 11 l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~---- 81 (387)
|..|+.+ -+..+|..+++..... . .....|.++....++.+-. ++.. -+..++..+++.... ..
T Consensus 115 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~-Gl~~~~~~~~~~~~~~~~~~~~ 187 (758)
T 3ott_A 115 LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-----GTYN-GLCRYIPSNGKFEGIPLPVHSS 187 (758)
T ss_dssp EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-----EETT-EEEEEETTTTEEEEECCCCCTT
T ss_pred EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-----EeCC-CHhhCccCCCceEEecCCCccc
Confidence 4444444 4777887665543210 0 1123467777665433322 2233 466777655432211 11
Q ss_pred -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621 82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE 160 (387)
Q Consensus 82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 160 (387)
....|.++...+++..|..|+. +-+..+|..+++...........|.++...+++.+.+ |+.+ -+.+++...
T Consensus 188 ~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~---- 260 (758)
T 3ott_A 188 QSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT---- 260 (758)
T ss_dssp CSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT----
T ss_pred cccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC----
Confidence 1124778877777776555654 4588899877654322111234588888887776544 4444 577777622
Q ss_pred CCCCCCCCccceEeee--------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCc
Q 035621 161 HTDDKNPDDLMLQKFV--------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCA 224 (387)
Q Consensus 161 ~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~ 224 (387)
. ....+. .....|.++..... +. |-.|+..| +.++.... ....+. ....
T Consensus 261 --------~-~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~ 325 (758)
T 3ott_A 261 --------T-PLQHIIHDSRNIQSLTNNIIWNIFADQE--HN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQ 325 (758)
T ss_dssp --------S-CCEEECCCTTCTTSCSCSCEEEEEECTT--CC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCB
T ss_pred --------C-cEEEEEcCCCCcCcCCcCeEEEEEEcCC--CC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCce
Confidence 1 111111 12235777754433 34 44455556 55443321 222222 1246
Q ss_pred eeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302 (387)
Q Consensus 225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 302 (387)
|.++....+|...+. +.+| +..++...+..... ....... ..-....|.++.-.++|++.+ |+ ++-|..||.
T Consensus 326 v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 326 FYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKT--YPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDY 399 (758)
T ss_dssp EEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSS--SCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEET
T ss_pred EEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcC--CCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCc
Confidence 888888877765554 4444 55565443211000 0000000 001234688888887776544 44 456999998
Q ss_pred CCccEEE
Q 035621 303 EKRQVVM 309 (387)
Q Consensus 303 ~~~~~~~ 309 (387)
.+++...
T Consensus 400 ~~~~~~~ 406 (758)
T 3ott_A 400 ATRQFIH 406 (758)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 8876543
No 344
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=95.29 E-value=1.1 Score=37.36 Aligned_cols=205 Identities=9% Similarity=0.065 Sum_probs=115.6
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCce-------eE--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDI-------LR--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
++..++++.+.+|.|+-..+..-+. +. .++. ...+..+........++..+..|.++-+...+.......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4566788889999998876643221 11 1222 234445544445567888888898877766432111100
Q ss_pred CCCCCccc---eEeeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceeEEEeCC
Q 035621 164 DKNPDDLM---LQKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG-------THLSTVTFPCAIMGLALDP 232 (387)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~ 232 (387)
..+.+ ...+. ....|..+...++ .....++..+..|.++-..+... .....+.....+..+....
T Consensus 85 ---~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~ 160 (312)
T 1suu_A 85 ---SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 160 (312)
T ss_dssp ------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC
T ss_pred ---CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC
Confidence 11111 11122 2234555443321 12467888899999998877432 2222222345566666555
Q ss_pred CCCeEEEEccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.+..++..+.+|....+....-... ....+.....+. ....|..+...+++..+++.+..|..+..++..
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5678889999999998887653221 112233333332 245566666655667788889999999988754
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.17 E-value=2.1 Score=40.18 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=99.8
Q ss_pred cCCCEEEEecCC----CcEEEEeCCCCceeEEc--------cCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEeC
Q 035621 93 ADGSYLFTGGLS----GNVYAISVPKGDILRSF--------SAHDKPVSCLKISPDGSLLISGGDDG------VIATVPI 154 (387)
Q Consensus 93 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~ 154 (387)
.++..++.|+.+ ..+.+||+.+.+-...- ......-..+.+..+++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889998776533222 11112223333322677778877543 4677777
Q ss_pred CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--cEEEEeCCCCcEEEEEe-----cC-Ccee
Q 035621 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--TCKFWRLLNGTHLSTVT-----FP-CAIM 226 (387)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-----~~-~~v~ 226 (387)
... ....+..+......- +.+...+ +.+++.|+.++ .+.+||..+.+-...-. .+ ....
T Consensus 476 ~t~----------~W~~~~~~p~~R~~h-~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 542 (695)
T 2zwa_A 476 KTR----------EWSMIKSLSHTRFRH-SACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542 (695)
T ss_dssp TTT----------EEEECCCCSBCCBSC-EEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC
T ss_pred CCC----------cEEECCCCCCCcccc-eEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee
Confidence 331 111111111111111 1222122 47888887654 68999998765322111 11 1223
Q ss_pred EEEeCCC-CCeEEEEcc--C-----CcEEEEeccccccccccccce-eEeecccccccEEEEEEecCCCEEEEEeC----
Q 035621 227 GLALDPT-ETDFFAAGS--D-----GLIYKGLLKYQSRQQMHKGQE-LVTLANRHDGVVVSVMMMNEGKNLVSAAE---- 293 (387)
Q Consensus 227 ~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---- 293 (387)
.+.+..+ ++.++.|+. + ..+.+||+.+... ....... +........... +++...++++++.||.
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~ 620 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSG 620 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCC
Confidence 3555555 566677765 2 3588889887542 0000000 000000011111 2223333677888874
Q ss_pred ----CCcEEEEECCCccEE
Q 035621 294 ----DGSVYIWEIEKRQVV 308 (387)
Q Consensus 294 ----dg~i~iwd~~~~~~~ 308 (387)
...|.+||+.+++-.
T Consensus 621 ~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 621 LFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CCCTTTSEEEEETTTTEEE
T ss_pred CCCCCCeEEEEECCCCeEE
Confidence 346999999887654
No 346
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=95.07 E-value=1.4 Score=37.56 Aligned_cols=207 Identities=16% Similarity=0.109 Sum_probs=116.5
Q ss_pred eccCCCEEEEecCCCcEEEEeCCC---------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 91 TTADGSYLFTGGLSGNVYAISVPK---------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 91 ~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
+-|+..++++.+.+|.|+--.+.. +..-..++. ...+..+........++..+..|.++-+...+.....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778899999999998765421 122233432 4456555555555677777888887766653322211
Q ss_pred CCCCCCCccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-------EEEEEecCCceeEEEe
Q 035621 162 TDDKNPDDLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-------HLSTVTFPCAIMGLAL 230 (387)
Q Consensus 162 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~v~~~~~ 230 (387)
. ...+.++. .+. ....|.++....+ ..+.+|+.++..|.++-..+.... ....+.....+..+..
T Consensus 82 r---~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~ 157 (370)
T 3l6v_A 82 S---NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVAL 157 (370)
T ss_dssp T---TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEE
T ss_pred c---ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEE
Confidence 1 11222221 122 2345655544322 224689999999999988764321 1112223445555555
Q ss_pred CCCCCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEEEEec--------------------------
Q 035621 231 DPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSVMMMN-------------------------- 283 (387)
Q Consensus 231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~-------------------------- 283 (387)
......++..+.+|.+..+....-..... ..+.....+ .....|.++...+
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~ 235 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL--AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP 235 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEECCC------------------------
T ss_pred eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe--CCCCEEEEEEEeccccccccccccccccccccccccccc
Confidence 55666788888899888887654222111 112222222 2234455554443
Q ss_pred ---------CCCEEEEEeCCCcEEEEECCC
Q 035621 284 ---------EGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 284 ---------~~~~l~s~~~dg~i~iwd~~~ 304 (387)
++..+++.+..|..+...+..
T Consensus 236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 236 AVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp -----------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 456889999999999888754
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.80 E-value=2 Score=37.95 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee------ccCCCeEEEEEeeCC--CCceE
Q 035621 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV------AHNDSVTAITCCIGS--FNSII 196 (387)
Q Consensus 125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~--~~~~l 196 (387)
-.....|+|.|+|+++++-...+.|++++.... ....+..+. ........|+++|+- ++.+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g----------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG----------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC----------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC----------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 345689999999987666544456887765210 111111111 124567789999851 12444
Q ss_pred EEEeC------------CCcEEEEeCCCC--c-----EEE-EEe--cCCceeEEEeCCCCCeEEEEcc
Q 035621 197 ISCSM------------DCTCKFWRLLNG--T-----HLS-TVT--FPCAIMGLALDPTETDFFAAGS 242 (387)
Q Consensus 197 ~s~~~------------d~~i~iwd~~~~--~-----~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~ 242 (387)
++-+. ...|.-|++... . .+. .+. .......++|.|||.++++.+.
T Consensus 96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 44332 124555554322 1 111 122 1245789999999987776543
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=94.63 E-value=1.7 Score=36.38 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=112.6
Q ss_pred CEEEEecCCCcEEEEeCCCC-------ceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621 96 SYLFTGGLSGNVYAISVPKG-------DILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP 167 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 167 (387)
..+++.+.+|.|+--.+.+. +-+..+. .....+..+........++.-+..|.++.....+...... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~ 80 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR---TA 80 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS---SS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cC
Confidence 45667778888876653211 1111111 1233455554444555677677778776655433322110 11
Q ss_pred CccceEeee--ccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-------EEEEEecCCceeEEEeCCCCCeE
Q 035621 168 DDLMLQKFV--AHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-------HLSTVTFPCAIMGLALDPTETDF 237 (387)
Q Consensus 168 ~~~~~~~~~--~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l 237 (387)
.+.++..+- .....|..+...++ .+..+++..+.+|.++-..+.... ....+.....+..+........+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDL 160 (327)
T ss_dssp CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEE
T ss_pred CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEE
Confidence 222221111 12345555544332 235789999999999988765422 11122234556666555666788
Q ss_pred EEEccCCcEEEEecc--ccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 238 FAAGSDGLIYKGLLK--YQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 238 ~~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+..+..|.++.+... .-... ....+.....+ .....|.++...+++.+|+..+..|.++.-.+..
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 889999999988876 32111 11122222222 2345677777666677899999999999887654
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=94.53 E-value=1.6 Score=35.57 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=106.3
Q ss_pred eeeEEeccCCCEEEEecCCCcEEE---EeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccC
Q 035621 86 VAPLATTADGSYLFTGGLSGNVYA---ISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEH 161 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 161 (387)
+..+.......+|+.-+..|.++- |+++.+.....+. ....|..+.... +..+++..+.+|.++-..+.... ..
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~ 103 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK 103 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh
Confidence 333333333344555555665543 3333221111133 245566654421 46789999999999998874432 11
Q ss_pred CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC---------CcEEEEEecCCceeEEEeCC
Q 035621 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN---------GTHLSTVTFPCAIMGLALDP 232 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~ 232 (387)
..+.....+.. .+.+..+..... ...++..+..|.+..+.... |.....+.....+..+...+
T Consensus 104 -----~~G~~~i~lke-gD~l~~~~~~~~--~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~ 175 (276)
T 3no0_A 104 -----AQGMPIIKLTE-GDEVVSIASSVD--ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN 175 (276)
T ss_dssp -----STTEECSCCCT-TCCEEEEEECCS--SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES
T ss_pred -----cCCeEEEecCC-CCEEEEEEEeCC--CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC
Confidence 12222222332 344555444433 35777788889888776532 11222233345666666556
Q ss_pred CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE--EECC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI--WEIE 303 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i--wd~~ 303 (387)
++..++..+..|.++...+......... +...... ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~-gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRG-VKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTT-CCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCC-CcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 6778999999999998887653322111 1111111 12233444433333345555566676666 6554
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.48 E-value=3.4 Score=39.23 Aligned_cols=258 Identities=11% Similarity=0.082 Sum_probs=132.2
Q ss_pred EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-----cCCCC
Q 035621 10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-----IPVPE 84 (387)
Q Consensus 10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-----~~~~~ 84 (387)
.|..|+.+| +..||..+.+...........|.++....+.... ++.+ -+..+|..+++.... -....
T Consensus 75 ~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWi------gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 75 YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWL------GALN-GLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEE------EETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEE------EcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence 455555555 7889987765432111122346665543322222 2333 577888766543221 01234
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SA----HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD 159 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 159 (387)
.|.++....+|.+.+ |+.+| +..++..+++..... .. ....|.++...+++..|..|+. +-+..+|..
T Consensus 147 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~---- 219 (758)
T 3ott_A 147 TIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS---- 219 (758)
T ss_dssp CEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT----
T ss_pred eEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC----
Confidence 678888877777555 44444 888887766543211 11 1224888888777765555654 457777762
Q ss_pred cCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---------CCceeEEE
Q 035621 160 EHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---------PCAIMGLA 229 (387)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~ 229 (387)
... ...+. .....|.++....+ +.+ ..|+.+ -+.+++..+.+.. .+.+ ...|.++.
T Consensus 220 --------~~~-~~~~~~l~~~~i~~i~~d~~--g~l-WigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 220 --------TGQ-IKQTEAFHNNSIKSLALDGN--GDL-LAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp --------TTE-EEEEEEEEEEEEEEEEECTT--CCE-EEEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEE
T ss_pred --------CCe-EEeccCCCCCeEEEEEEcCC--CCE-EEEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEE
Confidence 111 11111 11234666654433 344 444544 4888887765432 3321 23588888
Q ss_pred eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...+|. |.+|+..| +.++.... ... ....... ........|.++.-..+|.+.+ |+.+| +..++..+
T Consensus 286 ~D~~g~-lWiGT~~G-l~~~~~~~-~~~-~~~~~~~--~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~ 352 (758)
T 3ott_A 286 ADQEHN-IWLGTDYG-ISLSRYNS-ALQ-FIPISQI--TGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPA 352 (758)
T ss_dssp ECTTCC-EEEEESSS-EEEECCCC--CE-EEEHHHH--SCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTT
T ss_pred EcCCCC-EEEEeCCc-ccccccCC-cee-EEecccC--CCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccc
Confidence 887775 44555556 54443211 000 0000000 0001234688888877776554 44554 66666554
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=93.89 E-value=2.4 Score=35.16 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=111.7
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCceeE---------EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDILR---------SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD 163 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 163 (387)
|+...+++.+.+|.|+--.+.+-+... .++. ...+..+........++..+..|.++-+...+......
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~- 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR- 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS-
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC-
Confidence 345677888899998877664422111 1222 23344444444556677777888876666543322211
Q ss_pred CCCCCccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-----EEE--EEecCCceeEEEeCC
Q 035621 164 DKNPDDLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-----HLS--TVTFPCAIMGLALDP 232 (387)
Q Consensus 164 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-----~~~--~~~~~~~v~~~~~~~ 232 (387)
...+.++. .+. ....|.++...++ .++.+++..+..|.++-..+.... -+. .+.....+..+....
T Consensus 79 --~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~ 155 (307)
T 1zi0_A 79 --GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS 155 (307)
T ss_dssp --SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred --CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeC
Confidence 11222211 122 3345655543321 224678889999999988764211 111 122335555555555
Q ss_pred CCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
....++..+.+|.+..+....-.... ...+.....+ .....|.++...+++..+++.+..|.++-.++..
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe--CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 56678888899998888775432221 1112222222 2345566766555566788889999999888743
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.85 E-value=2.5 Score=35.34 Aligned_cols=212 Identities=14% Similarity=0.203 Sum_probs=113.9
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEE---EeCCCC------ceeEEc-c-CCCCCeEEEE-EcC--CCCEEEEEeCCCcE
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYA---ISVPKG------DILRSF-S-AHDKPVSCLK-ISP--DGSLLISGGDDGVI 149 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~------~~~~~~-~-~~~~~v~~~~-~~~--~~~~l~~~~~dg~i 149 (387)
+.+..+........|+.-+..|.++- |+++.. .++..+ . .....|..+. ..+ +..+++..+.+|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 44555554455556666666776554 444432 222111 1 1234555554 432 56799999999999
Q ss_pred EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CC---------cEEEE
Q 035621 150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL--NG---------THLST 218 (387)
Q Consensus 150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~---------~~~~~ 218 (387)
+--.+....... ..+.....+.. .+.+..+...... ..++..+..|.+..+... .- .....
T Consensus 122 Kr~~l~~~~~~~-----r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 122 KKSKLTDFDSNR-----SGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp EEEEGGGGCCCC-----SSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred EEeEHHHhhccc-----cCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 998875432221 11222223333 3445555444433 567777888988877765 21 11112
Q ss_pred EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621 219 VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297 (387)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 297 (387)
+.....|.++...+.+.+++..+..|.++.-.+........ ..+.....+. .-.+.+..+....+...++..+.+|.+
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~-~~~d~lv~~~~~~~~~~i~l~T~~G~~ 272 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD-RRRGRLVGALIVDDDSELYAVTSGGGV 272 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC-TTTCSEEEEEEECTTCEEEEEEGGGCE
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec-CCCCeEEEEEEeCCCccEEEEcCCCeE
Confidence 23445677777767777899999999998887765332211 1111111111 112334444444444455556667776
Q ss_pred EEEECCC
Q 035621 298 YIWEIEK 304 (387)
Q Consensus 298 ~iwd~~~ 304 (387)
.-++...
T Consensus 273 ir~~~~~ 279 (327)
T 3uc1_A 273 IRTAARQ 279 (327)
T ss_dssp EEEEGGG
T ss_pred EEEehhh
Confidence 6666543
No 353
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.32 E-value=3.1 Score=34.72 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=114.7
Q ss_pred cCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
|+...+++.+.+|.|+--.+..- ..-..++. ...+..+........++..+..|.++-+...+...... ...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~ 78 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDL 78 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCC
Confidence 55667888889998887755311 11112332 23444444444556777778888877666543322211 012
Q ss_pred ccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC------cEEEE--EecCCceeEEEeCCCCCe
Q 035621 169 DLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG------THLST--VTFPCAIMGLALDPTETD 236 (387)
Q Consensus 169 ~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~------~~~~~--~~~~~~v~~~~~~~~~~~ 236 (387)
+.++. .+. ....|.++...++ .++.+++..+.+|.++-..+... .-+.. +.....+..+........
T Consensus 79 G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 79 GQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNE 157 (323)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSE
T ss_pred CcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCE
Confidence 22111 122 2334555433332 12467888999999998877421 12222 223455655555556677
Q ss_pred EEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 035621 237 FFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 237 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 304 (387)
++..+.+|.+..+....-.... ...+.....+ .....|.++...+++. .|++.+..|..+..++..
T Consensus 158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe--CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 8889999999888876532211 1222222222 2345566665544455 788888999988887755
No 354
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.75 E-value=4 Score=34.44 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=118.3
Q ss_pred CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce--eEEc----cCCCCCeEEEEEcCC---CCEEEEE---eCCCcEEE
Q 035621 84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI--LRSF----SAHDKPVSCLKISPD---GSLLISG---GDDGVIAT 151 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~i 151 (387)
.....++|.|+|.++++--..|.|++++..+++. +..+ .........|+++|+ +..|... ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4578899999999777765589999998765553 2222 123567899999995 3444432 23445555
Q ss_pred EeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeC-------------CCcEEEEeCCCC----
Q 035621 152 VPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSM-------------DCTCKFWRLLNG---- 213 (387)
Q Consensus 152 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~---- 213 (387)
|.+..... ...........+..+. .....-..|.|.|++ .++++.+. .|.|.-.+....
T Consensus 112 ~~~~~~~~-~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 112 MLYDEKKP-SGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEBCTTSC-TTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEeCCCCc-ccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 55421000 0000001111122222 112234568888874 66666542 234443443311
Q ss_pred -----cEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccc----------cccceeEeecccccccEE
Q 035621 214 -----THLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQM----------HKGQELVTLANRHDGVVV 277 (387)
Q Consensus 214 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~v~ 277 (387)
..+... .......++|+|+|.++++-. .++.=.+--+..+...-. .....+..+ ..+.....
T Consensus 189 nPf~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~-~~~~~ap~ 266 (347)
T 3das_A 189 NPFPGSPVYSY-GHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW-STDEASPS 266 (347)
T ss_dssp CSSTTCCEEEB-CCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE-CTTTCCEE
T ss_pred CCCCCCeEEee-CCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec-CCCCCCCc
Confidence 112111 224567899999876555432 233333333332221100 001112222 11224567
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCccEE---EEeecccCCCceeEEEEe
Q 035621 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV---MVLKNELAGSISEMVIAT 326 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~ 326 (387)
.++|. +|..+...-..+.|....++....+ ..+-....+.+..|.+.+
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 88886 4666666666667777777655432 122222345777777765
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.70 E-value=3.5 Score=33.64 Aligned_cols=204 Identities=11% Similarity=0.001 Sum_probs=104.2
Q ss_pred CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCC
Q 035621 17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADG 95 (387)
Q Consensus 17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~ 95 (387)
||.|+.|-....-.+..-......|..++......+. + . ||.|..|-......+. .......|..++...+.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~----l--~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h 113 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA----L--K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA 113 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEE----E--E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEE----E--E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE
Confidence 8999999765322221111122346666665532221 1 3 8999999865432221 11123467766665543
Q ss_pred CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621 96 SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF 175 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 175 (387)
.++-. +|.|+.|-....-.+.........|..++...+...+ -. ||.+..|-....-.. ..+
T Consensus 114 --s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql--------g~p---- 175 (282)
T 3qhy_B 114 --SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT--------TVP---- 175 (282)
T ss_dssp --EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT--------SCC----
T ss_pred --EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC--------CCc----
Confidence 33334 8999999754322111111123457777765433222 23 799999965321111 000
Q ss_pred eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 176 VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
..-...|..++.-.. ..++. .||.|..|=......+. ..+....|..++-... +.++-. ||.++.|=...
T Consensus 176 ~~~~~~v~~i~~G~~---hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIF---HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSEEEEEECSS---EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred eecCCCeEEEEecCC---EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 011345777765433 34444 58999999755422111 1112235666665443 233333 99999997654
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.69 E-value=13 Score=36.30 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=33.6
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888999999999999999999999988764
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=90.67 E-value=6.4 Score=32.62 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=104.9
Q ss_pred CCCCCeEEEEEccCCCccc---------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---CC------cee---
Q 035621 60 TTGSGSVHLYNLWSSTPLH---------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---KG------DIL--- 118 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~------~~~--- 118 (387)
.+.+|.|+--.+..-+... .+...+.+..+........++..+..|.++-+... .. ..+
T Consensus 14 ~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~ 93 (312)
T 1suu_A 14 LTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 93 (312)
T ss_dssp EETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGT
T ss_pred EeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhc
Confidence 4567777766553322111 12233445555555555677777788876666542 21 111
Q ss_pred EEccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 119 RSFSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 119 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
..+.. ...|.++...+ +..+++..+..|.++...+....... ..+.....+.. .+.+..+..... +..
T Consensus 94 l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-----~~G~~~i~L~~-~d~lv~~~~~~~--~~~ 164 (312)
T 1suu_A 94 INLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-----SRGVIVIKLND-KDFVTSAEIVFK--DEK 164 (312)
T ss_dssp SCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------CEECBCCCT-TCCEEEEEEECT--TCE
T ss_pred cCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-----CCcEEEEecCC-CCEEEEEEEeCC--CCE
Confidence 11222 23455554332 45678889999999998885542221 12223333433 455666555433 356
Q ss_pred EEEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621 196 IISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
++..+.+|.+..+....- .....+.....+..+..-+++..+++.+..|......+...
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 778888999988876531 11222223456666666556677888899999988887653
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.31 E-value=6.4 Score=32.04 Aligned_cols=222 Identities=12% Similarity=-0.027 Sum_probs=113.0
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL 118 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 118 (387)
.|..++......+. + . ||.|..|-......+. .......|..++...+. .++. . ||.|+.|-....-.+
T Consensus 25 ~i~~ia~G~~h~~~----l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYFHGLA----L--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSSEEEE----E--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCCeEEE----E--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCC
Confidence 46677665532221 1 3 8999999865443222 11122456666665443 2333 4 899999975432211
Q ss_pred EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621 119 RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS 198 (387)
Q Consensus 119 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s 198 (387)
..-..-...|..++...+. .+.-. ||.|+.|-....-.. . ........|..++.-.. ..++.
T Consensus 95 g~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gql--------g----~~~~~~~~i~~i~~G~~---~~~~l 156 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQT--------T----VPAEAQSGVTALDGGVY---TALAV 156 (282)
T ss_dssp CCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTT--------S----CCGGGGSSEEEEEECSS---EEEEE
T ss_pred CCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcC--------C----CCccCCCCeEEEEcccC---EEEEE
Confidence 1111113467787775443 33334 899999965321111 0 00112345666655332 23332
Q ss_pred EeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621 199 CSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV 277 (387)
Q Consensus 199 ~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (387)
. ||.|..|-......+. .......|..++.... +.++- .+|.++.|=.......... ......|.
T Consensus 157 -~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p---------~~~~~~v~ 222 (282)
T 3qhy_B 157 -K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVP---------TEALSGVS 222 (282)
T ss_dssp -E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCC---------GGGGSSCC
T ss_pred -E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCC---------cccCCCce
Confidence 3 7999999765422111 1112345666665433 33333 6999999976553221110 01123466
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306 (387)
Q Consensus 278 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 306 (387)
.++..... .++.. ||.|+.|-.....
T Consensus 223 ~i~~G~~h-~~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 223 AIASGEWY-SLALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp EEEECSSC-EEEEE--TTEEEEESTTCCC
T ss_pred EEEcCCCE-EEEEE--CCEEEEecCCCCc
Confidence 66654433 33333 8999999866543
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.74 E-value=7.7 Score=32.07 Aligned_cols=235 Identities=11% Similarity=0.172 Sum_probs=118.2
Q ss_pred CCCCCeEEEEEccCCCccc---------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCCC------ceeE--
Q 035621 60 TTGSGSVHLYNLWSSTPLH---------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPKG------DILR-- 119 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~~------~~~~-- 119 (387)
.+.+|.|+--.+.+-+... .+...+.+..+........|+..+..|.++-+. ++.. .++.
T Consensus 9 ~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~ 88 (307)
T 1zi0_A 9 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL 88 (307)
T ss_dssp EETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGT
T ss_pred EeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhc
Confidence 4566777655543321111 122334454444445556677777788755544 3322 2211
Q ss_pred -EccCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 120 -SFSAHDKPVSCLKIS---PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 120 -~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
.+. ....|.++..- +++.+++..+..|.++--.+....... ..+.....+..+ +.+..+..... ...
T Consensus 89 l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~-----r~G~~~i~l~~~-d~lv~~~~~~~--~~~ 159 (307)
T 1zi0_A 89 LPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-----TAGKVAIKLVDG-DELIGVDLTSG--EDE 159 (307)
T ss_dssp SCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC-----TTCEESSCCCTT-CCEEEEEEECT--TCE
T ss_pred cCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc-----cCCeEEEEECCC-CEEEEEEEeCC--CCE
Confidence 122 23456555432 345679999999999998774432221 122222233333 45555544433 256
Q ss_pred EEEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-ccccee
Q 035621 196 IISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQEL 265 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~ 265 (387)
++..+.+|.+..++...- .....+.....|.++...+++..+++.+..|.++..++........ ..+...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 777778888877776421 1111223345677776656667788889999988887754321111 111112
Q ss_pred EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
..+. ...+.+-.+....+..-++..+.+|.+.-+++..
T Consensus 240 ~~~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVT-ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCC-TTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEec-CCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 2221 1223444444333334455555666665555443
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.11 E-value=7.9 Score=31.39 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=99.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621 126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205 (387)
Q Consensus 126 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i 205 (387)
..+..+........|+.-+..|.++--.+.+..... ... + + .....|..+.. ++-+..+++..+.+|.+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~-----~~~--l--l-~~~e~i~~v~~-~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS-----KVS--L--K-SREEKIVGAFI-REKFGNRLLLATKKGYV 92 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE-----ECC--C--S-STTCCEEEEEE-GGGSCSEEEEEETTSEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc-----ccc--c--C-CCCCEEEEEEC-CcCCCCEEEEEeCCCEE
Confidence 345555444445567777778887765553332111 011 2 2 23456666643 32124789999999999
Q ss_pred EEEeCCCCc------EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEE
Q 035621 206 KFWRLLNGT------HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVS 278 (387)
Q Consensus 206 ~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 278 (387)
+-..+.... ....+.....+..+........++..+..|.++.+....-+... ...+.....+ .....|..
T Consensus 93 Kr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--~~~d~vv~ 170 (276)
T 3no0_A 93 KKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--EKNDETSG 170 (276)
T ss_dssp EEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEE
T ss_pred EEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--CCCCEEEE
Confidence 998875432 11222334566666666667789999999999988775533221 1123332222 22356777
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 279 VMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 279 ~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
+...+++..++..+..|.++...+..
T Consensus 171 ~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 171 LRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 66666677888999999999988754
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=87.73 E-value=12 Score=31.84 Aligned_cols=186 Identities=10% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCCCCeEEEEEccC---------CCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCC------CceeEE-
Q 035621 60 TTGSGSVHLYNLWS---------STPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPK------GDILRS- 120 (387)
Q Consensus 60 ~~~d~~v~vw~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~------~~~~~~- 120 (387)
.+.+|.|+--.+.. +.....++....+..+........|+..+..|.++-+. ++. |..+..
T Consensus 13 lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~l 92 (370)
T 3l6v_A 13 LSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINW 92 (370)
T ss_dssp EESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGS
T ss_pred EeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhc
Confidence 45667766554421 11122333445565555555566677777778665554 332 222211
Q ss_pred --ccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 121 --FSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 121 --~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
+. ....|.++..-+ ++.+|+.++..|.++...+....... ..+.....+.. .+.+..+..... ...
T Consensus 93 l~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~-----~~G~~ai~L~~-~d~lv~v~~~~~--~~~ 163 (370)
T 3l6v_A 93 IPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL-----ARGKIAINLDE-GDALVGVALTDG--DRD 163 (370)
T ss_dssp CCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC-----TTCEESSCCCT-TCCEEEEEEECS--CCE
T ss_pred cCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc-----CCceEEEEeCC-CCEEEEEEEeCC--Cce
Confidence 22 234555554332 45689999999999998875443211 12222223333 344555544433 356
Q ss_pred EEEEeCCCcEEEEeCCCCc---------EEEEEecCCceeEEEeCC----------------------------------
Q 035621 196 IISCSMDCTCKFWRLLNGT---------HLSTVTFPCAIMGLALDP---------------------------------- 232 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~v~~~~~~~---------------------------------- 232 (387)
++..+.+|.+.-++...-. ....+.....|.++...+
T Consensus 164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~ 243 (370)
T 3l6v_A 164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADN 243 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------------------------
T ss_pred EEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccc
Confidence 7777788887777654211 111122334455544433
Q ss_pred -CCCeEEEEccCCcEEEEecccc
Q 035621 233 -TETDFFAAGSDGLIYKGLLKYQ 254 (387)
Q Consensus 233 -~~~~l~~~~~dg~i~i~d~~~~ 254 (387)
.+..+++.+..|..+...+...
T Consensus 244 ~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 244 GDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ---CEEEEEETTSEEEEEEGGGS
T ss_pred cCCceEEEeeCCCCEEEEEHHHh
Confidence 4467888899999888877653
No 362
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.15 E-value=20 Score=33.71 Aligned_cols=238 Identities=11% Similarity=0.097 Sum_probs=118.0
Q ss_pred cccCCCcEEEee-----CCCCcEEEEeCCCCceeEe-ccCCCC--------CceeEEEcC-ccceeeec-----cccCCC
Q 035621 3 HHLPCNEVILTS-----SPEGPITAYNPSSGAILAH-FSGSRS--------PRRGLTFAG-KPFIAASH-----ISPTTG 62 (387)
Q Consensus 3 ~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~-~~~~~~--------~v~~~~~~~-~~~~~~~~-----~~~~~~ 62 (387)
+++|++++++.+ +.-..++++|+.+++.+.. +. ... ....++|.+ +..+.... +-..+.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence 488999887763 3334699999999987632 22 110 013346654 33333221 112233
Q ss_pred CCeEEEEEccCCCc--ccccC--CCCCeeeEEeccCCCE-----EEEec---CCCcEEEEeCCC--CceeEEccCCCCCe
Q 035621 63 SGSVHLYNLWSSTP--LHNIP--VPEPVAPLATTADGSY-----LFTGG---LSGNVYAISVPK--GDILRSFSAHDKPV 128 (387)
Q Consensus 63 d~~v~vw~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~v 128 (387)
...|+.|.+-+... ...+. ....-.....++++++ +++.+ ....+.+.+... ++.. .+......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDA- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTC-
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcc-
Confidence 46788887755421 11222 2222233445666652 33332 224566666543 3322 23222221
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceE
Q 035621 129 SCLKISPDGSLLISGG----------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSII 196 (387)
Q Consensus 129 ~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l 196 (387)
.+..+.++.+++... ..+.|...|+....... ........+.. ....+..+.+..+ .++
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~---~l~ 363 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTE-----SDKTSLKILFTPTANEVFNFISTTKD---RVF 363 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCG-----GGCTTCEEEECCCTTEEEEEEEECSS---CEE
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccc-----cccccceEEECCCCCCeEEEEEEECC---EEE
Confidence 123344555555331 35678888874321000 00011222222 2335666766544 577
Q ss_pred EEEeCCCc--EEEEeCCCCc-EEEE-EecC--CceeEEEeCCCCCeEEEE-cc---CCcEEEEecc
Q 035621 197 ISCSMDCT--CKFWRLLNGT-HLST-VTFP--CAIMGLALDPTETDFFAA-GS---DGLIYKGLLK 252 (387)
Q Consensus 197 ~s~~~d~~--i~iwd~~~~~-~~~~-~~~~--~~v~~~~~~~~~~~l~~~-~~---dg~i~i~d~~ 252 (387)
++...++. +.++|+.+++ .... +..+ ..+......+++..++.. +. -+.++.+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77777764 6777776664 2333 4333 456667777777655443 32 3567777765
No 363
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.36 E-value=13 Score=30.66 Aligned_cols=136 Identities=7% Similarity=-0.024 Sum_probs=71.1
Q ss_pred ccCCCcEEEeeCCC--------------CcEEEEeCCCCceeEeccCCCCCceeEEEcC--ccceeeeccccCCCCCeEE
Q 035621 4 HLPCNEVILTSSPE--------------GPITAYNPSSGAILAHFSGSRSPRRGLTFAG--KPFIAASHISPTTGSGSVH 67 (387)
Q Consensus 4 ~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~d~~v~ 67 (387)
++++|+.|+..... ..|+..++..++.. .+.. .... .+++ +..+... .+......|.
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~~~--~~s~~g~~Iy~~~--~~~~~~~~Iy 132 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DPCI--YASLIGNYIYYLH--YDTQTATSLY 132 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SCEE--EEEEETTEEEEEE--ESSSSCEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CCcc--EEEEeCCEEEEEe--ecCCCCceEE
Confidence 56777777766432 35777776655432 2321 1122 3444 2222211 0113345566
Q ss_pred EEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621 68 LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD 146 (387)
Q Consensus 68 vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 146 (387)
.-++..........+.. .+++++++.|+-.+. ...|...++..+.....+. +... ..+.|++.+|+-....
T Consensus 133 ~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred EEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence 66665443333322222 456788888886654 5688888887665443333 2222 3456888888776544
Q ss_pred C--cEEEEeC
Q 035621 147 G--VIATVPI 154 (387)
Q Consensus 147 g--~i~iwd~ 154 (387)
+ .|..-++
T Consensus 205 ~~~~I~~~~l 214 (302)
T 3s25_A 205 RDNAIVHVNI 214 (302)
T ss_dssp GTTEEEEECS
T ss_pred CCcEEEEEEC
Confidence 3 4544444
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.67 E-value=18 Score=31.87 Aligned_cols=112 Identities=7% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---cEEEEEe---c-------CCceeEEEeCCC---CCeEEEE-cc
Q 035621 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---THLSTVT---F-------PCAIMGLALDPT---ETDFFAA-GS 242 (387)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~---~-------~~~v~~~~~~~~---~~~l~~~-~~ 242 (387)
..-+.|+|.|++.+++|+ +...|.|++++.... ..+..+. . ......++++|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 345678888886323554 567899999975422 1222222 1 346788999997 3344433 22
Q ss_pred --C----------CcEEEEeccccc--cccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC
Q 035621 243 --D----------GLIYKGLLKYQS--RQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED 294 (387)
Q Consensus 243 --d----------g~i~i~d~~~~~--~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d 294 (387)
+ ..|.-|.+.... .........+.... ..| .-..|+|.|||.++++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCCC
Confidence 1 134445554321 11111112222221 234 35789999999877766543
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.41 E-value=19 Score=30.85 Aligned_cols=230 Identities=7% Similarity=-0.023 Sum_probs=99.6
Q ss_pred CeeeEEecc-C-CCEEEEecCCCcEEEEeCCCCceeEEcc---C----------------CCCCeEEEEEcCC-CCEEEE
Q 035621 85 PVAPLATTA-D-GSYLFTGGLSGNVYAISVPKGDILRSFS---A----------------HDKPVSCLKISPD-GSLLIS 142 (387)
Q Consensus 85 ~v~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~----------------~~~~v~~~~~~~~-~~~l~~ 142 (387)
.|.++++.| + ...+.+++..+.|...+- .++.-..+. . ....+.+|.++|. ...+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 467788886 2 456666665665655532 232222221 0 1235789999883 444555
Q ss_pred EeCCCcEEEEe-CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621 143 GGDDGVIATVP-IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT- 220 (387)
Q Consensus 143 ~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 220 (387)
+..++.|...+ -.+.+............+.. .......+.++.+.|.. ...++.+...+ |...+ ..++....+.
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~-~~~~g~~~~~i~~~~~~-~~~l~vg~~~g-l~~s~-D~G~tW~~~~~ 270 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDP-NVEFGHDPHCVVQHPAA-PDILYQQNHCG-IYRMD-RREGVWKRIGD 270 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSS-SSSSCBCEEEEEECSSS-TTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCC-ccccCcceeEEEECCCC-CCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence 55444443322 11111110000000000000 00001247788887753 24555555444 44333 2233333332
Q ss_pred -cC----CceeEEEeCCC-CCeEEEEcc-----------CCcEEEEeccccccccccccceeEeeccccc----ccEEEE
Q 035621 221 -FP----CAIMGLALDPT-ETDFFAAGS-----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD----GVVVSV 279 (387)
Q Consensus 221 -~~----~~v~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~ 279 (387)
.+ ..+..++++|. ...++++.. ++...+|.......... .+..-+.... .....+
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~----~~~~glp~~~~~~~~~~~~~ 346 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQ----RQDRGLPTDQAWLTVKRQAM 346 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCE----EECBTSCCSSCCCCCCTBSE
T ss_pred CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCce----ECCCCCCCccccceEEEEEE
Confidence 12 23567888763 345555532 23344554443211100 0000000000 011357
Q ss_pred EEecC-CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621 280 MMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA 325 (387)
Q Consensus 280 ~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 325 (387)
+++|. ...|+.++.++.|..- .+.++.-..+..... .+.++.|+
T Consensus 347 ~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp-~~~~v~~~ 391 (394)
T 3b7f_A 347 TADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLP-HIYAVQSA 391 (394)
T ss_dssp EECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCS-CEEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCC-CeeEEEEe
Confidence 78774 3456666666655433 234554444444433 56666655
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.78 E-value=22 Score=30.44 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=91.3
Q ss_pred CCCCeEEEEEccCCCccc-----------ccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-Cc----------
Q 035621 61 TGSGSVHLYNLWSSTPLH-----------NIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GD---------- 116 (387)
Q Consensus 61 ~~d~~v~vw~~~~~~~~~-----------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~---------- 116 (387)
..+|.|..|-......+. .+. ....|..++.. ..+.++-..+|.|+.|=... ++
T Consensus 123 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 200 (389)
T 3kci_A 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL 200 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred cCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccc
Confidence 468999999654321110 111 11234444443 34455556788999996422 11
Q ss_pred eeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCc
Q 035621 117 ILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNS 194 (387)
Q Consensus 117 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 194 (387)
....+. .....|..++........+.-..||.|+.|-....-..-.........+ ..+.. ....|..++.-. .
T Consensus 201 ~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p-~~v~~~~~~~v~~v~~G~----~ 275 (389)
T 3kci_A 201 KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP-MKIDSLTGLGVVKVECGS----Q 275 (389)
T ss_dssp EEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE-EECGGGTTSCEEEEEEET----T
T ss_pred cceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc-EEecccCCCcEEEEeCCC----C
Confidence 011111 1234577777654335666677899999996533221111110001111 11111 122466665532 3
Q ss_pred eEEEEeCCCcEEEEeCCCC--------c-E--EEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621 195 IIISCSMDCTCKFWRLLNG--------T-H--LSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 195 ~l~s~~~d~~i~iwd~~~~--------~-~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 253 (387)
..+.-..||.|..|=.... . . ...+.. ...|..++. ...+.++-..+|.|+.|=...
T Consensus 276 hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 276 FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 4444567899999965321 0 1 111111 234555544 334556667899999997654
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.74 E-value=2.8 Score=41.97 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621 275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (387)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556677788999999999999999999999988764
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.66 E-value=41 Score=32.90 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=30.6
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 220 (387)
.+.+++..++ ..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~--~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLST--YNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETT--TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCC--CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3455555544 4789999999999999999999998875
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.00 E-value=27 Score=29.06 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=99.4
Q ss_pred CCCCCeEEEEEccCC----CcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCC------CceeEE-cc-CC
Q 035621 60 TTGSGSVHLYNLWSS----TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPK------GDILRS-FS-AH 124 (387)
Q Consensus 60 ~~~d~~v~vw~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~------~~~~~~-~~-~~ 124 (387)
.+.+|.|+--.+... .....+...+.+..+........|+..+..|.++-+. ++. |.++.. +. ..
T Consensus 11 lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~ 90 (323)
T 1wp5_A 11 VTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDR 90 (323)
T ss_dssp EETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCT
T ss_pred EeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCC
Confidence 456677766544311 1111223334555555555556677777788765554 322 222111 11 12
Q ss_pred CCCeEEE-EEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC
Q 035621 125 DKPVSCL-KISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM 201 (387)
Q Consensus 125 ~~~v~~~-~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 201 (387)
...|.++ ...+ ++.+++.++.+|.++-..+........ ..+.....+... +.+..+..... ...++..+.
T Consensus 91 ~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r----~~G~~ai~l~e~-d~lv~~~~~~~--~~~i~l~T~ 163 (323)
T 1wp5_A 91 DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY----SKPLTGINLKND-DQVVDVHLTDG--MNELFLVTH 163 (323)
T ss_dssp TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC----SSCEECSCCCTT-CCEEEEEEECS--CSEEEEEET
T ss_pred CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc----cCceEEEEeCCC-CEEEEEEEeCC--CCEEEEEeC
Confidence 3345554 3432 256899999999999988754422210 112222223322 45555444433 356777788
Q ss_pred CCcEEEEeCCCCc-------EEEEE--ecCCceeEEEeCCCCC-eEEEEccCCcEEEEeccc
Q 035621 202 DCTCKFWRLLNGT-------HLSTV--TFPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKY 253 (387)
Q Consensus 202 d~~i~iwd~~~~~-------~~~~~--~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 253 (387)
+|.+..+....-. -++-+ .....|.++...+++. .+++.+..|..+..++..
T Consensus 164 ~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 164 NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 8988888764311 12222 2344566665444444 788888888888777765
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.45 E-value=35 Score=29.10 Aligned_cols=168 Identities=10% Similarity=0.126 Sum_probs=94.2
Q ss_pred CeEEEEEccCC--CcccccCCCC-------CeeeEEec---cC----CCEEEEec-CCCcEEEEeCCCCceeEEcc----
Q 035621 64 GSVHLYNLWSS--TPLHNIPVPE-------PVAPLATT---AD----GSYLFTGG-LSGNVYAISVPKGDILRSFS---- 122 (387)
Q Consensus 64 ~~v~vw~~~~~--~~~~~~~~~~-------~v~~~~~~---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---- 122 (387)
-.|.+||+.++ +.++.+..+. .+..+.+. |+ +.+++... ..+.|.++|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 47889999999 8888776542 35667776 22 34444443 45689999998886544331
Q ss_pred CC--------------CCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCc--ccccCCCCCCCCccceEeeeccCC--
Q 035621 123 AH--------------DKPVSCLKISPD----GSLLISGGDDGVIATVPIFQ--LVDEHTDDKNPDDLMLQKFVAHND-- 180 (387)
Q Consensus 123 ~~--------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 180 (387)
.. ...+..|+++|+ ++.|.-....+. ++|.+.. +.+.. ....++.+ +..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~------~~~~v~~~-G~kg~~ 274 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKG------GKLNPELL-GNRGKY 274 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTT------CCCCCEEE-EECCTT
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcc------hhhceEEe-eecCCC
Confidence 10 246888999997 677766655442 3444321 11110 11122222 2222
Q ss_pred -CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-C---cEEEEEecC---CceeEEEeCCCCCeEEEE
Q 035621 181 -SVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-G---THLSTVTFP---CAIMGLALDPTETDFFAA 240 (387)
Q Consensus 181 -~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~~~---~~v~~~~~~~~~~~l~~~ 240 (387)
.-..+++.+ .+|.++++--....|..|+..+ . +....+... ..+..+.+.++|.+.+..
T Consensus 275 s~~~~~~~D~-~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 275 NDAIALAYDP-KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CCEEEEEECT-TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCcceEEEeC-CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 222333332 3367888888889999999875 1 122333322 235566666665544443
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.62 E-value=40 Score=28.80 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=115.2
Q ss_pred CCCCeEEEEEccCCCccc-----------ccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-c----------
Q 035621 61 TGSGSVHLYNLWSSTPLH-----------NIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-D---------- 116 (387)
Q Consensus 61 ~~d~~v~vw~~~~~~~~~-----------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~---------- 116 (387)
..||.|..|-......+- .+. ....+..++++....+.++-..+|.|+.|-.... +
T Consensus 69 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~ 148 (389)
T 3kci_A 69 TADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCD 148 (389)
T ss_dssp ETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred cCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCc
Confidence 478999999754321110 011 1123444566666666666678999999954221 0
Q ss_pred eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621 117 ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195 (387)
Q Consensus 117 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (387)
....+.. ....|..++.. ....+.-..||.|+.|-....-..-.........+..........|..++.... ...
T Consensus 149 ~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g--~~~ 224 (389)
T 3kci_A 149 RPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG--DAQ 224 (389)
T ss_dssp EEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS--SCE
T ss_pred CCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC--CcE
Confidence 1111221 12356666654 345566678899999965332111111100011111111112335666655321 145
Q ss_pred EEEEeCCCcEEEEeCCCC-c----------EEEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc---
Q 035621 196 IISCSMDCTCKFWRLLNG-T----------HLSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--- 259 (387)
Q Consensus 196 l~s~~~d~~i~iwd~~~~-~----------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--- 259 (387)
.+.-..||.|..|-.... + ....+.. ...|..++. ...+.++-..+|.|+.|=.......-.
T Consensus 225 t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 555678899999964321 1 1111111 123544444 334555567889999997654221110
Q ss_pred cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
.....+..........|..++... ...+.-..||.|+.|-...
T Consensus 303 ~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 303 DHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred ccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 000111111111223466665533 3445557899999997654
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.34 E-value=58 Score=30.60 Aligned_cols=205 Identities=10% Similarity=0.039 Sum_probs=98.4
Q ss_pred eeEE-eccCCCEEEEecC-C----CcEEEEeCCCCceeE-Ecc-CCCC------CeEEEEEcCCCCEEEEEe--------
Q 035621 87 APLA-TTADGSYLFTGGL-S----GNVYAISVPKGDILR-SFS-AHDK------PVSCLKISPDGSLLISGG-------- 144 (387)
Q Consensus 87 ~~~~-~~~~~~~l~~~~~-d----g~i~i~d~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~~~~-------- 144 (387)
..+. ++|++++++.+-. . ..++++|+.+++.+. .+. .-+. ....++|..+ ..++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 3444 8899988776522 2 379999999988763 122 0001 1134477633 3344432
Q ss_pred ---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCc---eEEEEeCC---CcEEEEeCCCC-
Q 035621 145 ---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNS---IIISCSMD---CTCKFWRLLNG- 213 (387)
Q Consensus 145 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~---~l~s~~~d---~~i~iwd~~~~- 213 (387)
.-..|+.|.+... ...-...+......+ ......+++... .+++.+.+ ..+.+.|....
T Consensus 211 ~~~~~~~v~~~~~Gt~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 280 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGES----------IEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN 280 (711)
T ss_dssp TTSSBCEEEEEETTSC----------GGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS
T ss_pred cCCCCCEEEEEECCCC----------hHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC
Confidence 1245777776321 111222233322332 223333443221 34544422 34566665431
Q ss_pred cEEEEEecCCceeEEEeCCCCCeEEEE----------ccCCcEEEEecccccccc--ccccceeEeecccccccEEEEEE
Q 035621 214 THLSTVTFPCAIMGLALDPTETDFFAA----------GSDGLIYKGLLKYQSRQQ--MHKGQELVTLANRHDGVVVSVMM 281 (387)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~ 281 (387)
..+..+..+.... +..+.++.+++.. ...+.|...++....... ......+ +.......+..+.+
T Consensus 281 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 357 (711)
T 4hvt_A 281 LKLQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL--FTPTANEVFNFIST 357 (711)
T ss_dssp CEEEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE--ECCCTTEEEEEEEE
T ss_pred CcceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE--ECCCCCCeEEEEEE
Confidence 1233333333222 2334455444432 136778888887632100 0000111 11233456788888
Q ss_pred ecCCCEEEEEeCCCc--EEEEECCCcc
Q 035621 282 MNEGKNLVSAAEDGS--VYIWEIEKRQ 306 (387)
Q Consensus 282 s~~~~~l~s~~~dg~--i~iwd~~~~~ 306 (387)
..+ .++++...++. |.++++.+++
T Consensus 358 ~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 358 TKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred ECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 875 56777777764 6777776664
No 373
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=71.30 E-value=49 Score=28.43 Aligned_cols=208 Identities=13% Similarity=0.060 Sum_probs=99.2
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ce----------eEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKG-DI----------LRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATV 152 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~----------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 152 (387)
.|..++.. ..+.++-..+|.|+.|-.... ++ ...+.. ....|..++... ...+.-..+|.|+.|
T Consensus 122 ~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~alt~~G~v~~w 197 (406)
T 4d9s_A 122 RIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAVTEDGDLYGW 197 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEEE
T ss_pred CEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEEeCCCCEEEe
Confidence 45555443 344555567899999964321 11 111211 123566666543 455566788999999
Q ss_pred eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-----------EEEEEe-
Q 035621 153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-----------HLSTVT- 220 (387)
Q Consensus 153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~- 220 (387)
-....-..-.........+..........|..++.-. ...+.-..+|.|..|-..... ....+.
T Consensus 198 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~----~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW----RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp ECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS----SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC----CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 6532211111000001111111111224566665432 344555678999999643211 111111
Q ss_pred -cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc---cccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621 221 -FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM---HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296 (387)
Q Consensus 221 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 296 (387)
....|..++- ...+.++-..+|.++.|=.......-. .....+..........|..++.-. .+.+.-..||.
T Consensus 274 ~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~ 349 (406)
T 4d9s_A 274 LSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNN 349 (406)
T ss_dssp GTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSC
T ss_pred cCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCC
Confidence 1223554443 334556667889999997554221110 000111111111233566666533 34455567899
Q ss_pred EEEEECCC
Q 035621 297 VYIWEIEK 304 (387)
Q Consensus 297 i~iwd~~~ 304 (387)
|+.|-...
T Consensus 350 v~~wG~n~ 357 (406)
T 4d9s_A 350 VFAWGRGT 357 (406)
T ss_dssp EEEEECCT
T ss_pred EEEecCCC
Confidence 99997544
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.56 E-value=18 Score=33.01 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=41.9
Q ss_pred eeeEEeccCCCEEEEecCC------------CcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEE
Q 035621 86 VAPLATTADGSYLFTGGLS------------GNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISG 143 (387)
Q Consensus 86 v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 143 (387)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+... ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 24667777778877666554 4689999999999887765
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.64 E-value=6.7 Score=36.55 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=30.1
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621 275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN 313 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (387)
.|.++.+ +..++++-+.|.++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 467999999999999999999999887754
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.76 E-value=28 Score=31.54 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=43.4
Q ss_pred CCeeeEEeccCCCEEEEecC------------CCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEEe
Q 035621 84 EPVAPLATTADGSYLFTGGL------------SGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISGG 144 (387)
Q Consensus 84 ~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 144 (387)
.....+.|.++|.+.+.... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34667999999987773321 125777787788876666533 35689999999999887764
No 377
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=65.83 E-value=64 Score=27.68 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=94.6
Q ss_pred CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-----------cC--CCCCeeeEEeccCCCEEEEecCCCc
Q 035621 40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-----------IP--VPEPVAPLATTADGSYLFTGGLSGN 106 (387)
Q Consensus 40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-----------~~--~~~~v~~~~~~~~~~~l~~~~~dg~ 106 (387)
.|..++......+. -..+|.|..|-.....++.. +. ....|..++.. ..+.++-..+|.
T Consensus 122 ~i~~ia~G~~h~~a------lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~ 193 (406)
T 4d9s_A 122 RIKQIACGDSHCLA------VTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGD 193 (406)
T ss_dssp CEEEEEECSSEEEE------EETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSC
T ss_pred CEEEEEEChhheEE------EcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCC
Confidence 45555554433222 24789999997654322111 11 11234444443 334555567889
Q ss_pred EEEEeCCCC-c----------eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621 107 VYAISVPKG-D----------ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174 (387)
Q Consensus 107 i~i~d~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 174 (387)
|+.|-.... + ....+.. ....|..++... ...+.-..+|.|+.|-....-..-.... ........
T Consensus 194 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~ 270 (406)
T 4d9s_A 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHK 270 (406)
T ss_dssp EEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEE
Confidence 999954221 1 0111111 124566666543 3455556889999986532211111000 00011111
Q ss_pred ee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-c----------EEEEEe--cCCceeEEEeCCCCCeEEEE
Q 035621 175 FV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-T----------HLSTVT--FPCAIMGLALDPTETDFFAA 240 (387)
Q Consensus 175 ~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~~--~~~~v~~~~~~~~~~~l~~~ 240 (387)
+. .....|..++.-. ...+.-..||.|..|=.... + ....+. ....|..++. ...+.++-
T Consensus 271 v~~~~~~~v~~i~~G~----~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~al 344 (406)
T 4d9s_A 271 LEALSNSFISQISGGW----RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAV 344 (406)
T ss_dssp CGGGTTSCEEEEEECS----SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEE
T ss_pred ecccCCCCEEEEEecC----CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEE
Confidence 11 1223466665432 34444567899999964421 1 111122 1234555444 34455666
Q ss_pred ccCCcEEEEeccc
Q 035621 241 GSDGLIYKGLLKY 253 (387)
Q Consensus 241 ~~dg~i~i~d~~~ 253 (387)
..+|.|+.|=...
T Consensus 345 t~~G~v~~wG~n~ 357 (406)
T 4d9s_A 345 TERNNVFAWGRGT 357 (406)
T ss_dssp ETTSCEEEEECCT
T ss_pred eCCCCEEEecCCC
Confidence 7789999996544
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=59.18 E-value=66 Score=25.58 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=80.3
Q ss_pred CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEE---eCCC--
Q 035621 138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW---RLLN-- 212 (387)
Q Consensus 138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iw---d~~~-- 212 (387)
..+++.+.+|.|+--..... ......+.. .+.+..+...... ..++..+..|.++-+ ++..
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~-----------~~~~~~lke-~D~l~~~~~~~t~--~~ll~~T~~Gr~~~~~~~elp~~r 68 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDI-----------DAPGLNYKA-GDSFKAAVKGKSN--QPVVFVDSTGRSYAIDPITLPSAR 68 (256)
T ss_dssp EEEEEEETTSEEEEEESSCC-----------CSTTSCCCT-TCCEEEEEEEETT--SCEEEEETTSEEEEECGGGSCCSS
T ss_pred CEEEEEeCCCEEEEeeCCcC-----------CceeccCCC-CCEEEEEEEeCCC--CEEEEEeCCCeEEEEEHHHCCCcC
Confidence 34566778888876554211 000111222 2334444333332 456666777876554 4422
Q ss_pred --CcEE---EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEe-cCCC
Q 035621 213 --GTHL---STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM-NEGK 286 (387)
Q Consensus 213 --~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~ 286 (387)
|.++ ..+.....|..+....++.+++.++..|.++...+....... ..+.....+ . ....+..+... .++.
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-r~G~~~i~L-~-~~d~lv~~~~~~~~~~ 145 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-RAGKALITL-P-ENAHVMPPVVIEDASD 145 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-TTCEECBCC-C-TTCCBCCCEECCCTTC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-cCceEEEEE-C-CCCEEEEEEEecCCCC
Confidence 2211 112234567776554566778899999999998876532211 112222222 1 22345444454 3456
Q ss_pred EEEEEeCCCcEEEEECCC
Q 035621 287 NLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 287 ~l~s~~~dg~i~iwd~~~ 304 (387)
.++..+.+|.+..+++..
T Consensus 146 ~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 146 MLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred EEEEEcCCCeEEEEEHHH
Confidence 788888999988888754
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.21 E-value=59 Score=29.56 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=36.5
Q ss_pred ceeEEEeCCCCCeEEEEccC------------CcEEEEeccccccccccccceeEeeccc-ccccEEEEEEecCCCEEEE
Q 035621 224 AIMGLALDPTETDFFAAGSD------------GLIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKNLVS 290 (387)
Q Consensus 224 ~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s 290 (387)
....+.|.++|.+.++.... ..++.++...+ .+..++.. ....++.++|+||++.|..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG---------el~~fl~~P~~aEpnGiafSPD~ktLfV 547 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG---------EIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC---------CEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC---------eEEEEEeCCCCccccCCEECCCCCEEEE
Confidence 46679999998877744321 13444444331 23333322 2457899999999998776
Q ss_pred E
Q 035621 291 A 291 (387)
Q Consensus 291 ~ 291 (387)
+
T Consensus 548 ~ 548 (592)
T 4a9v_A 548 G 548 (592)
T ss_dssp E
T ss_pred E
Confidence 5
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=56.89 E-value=92 Score=26.55 Aligned_cols=124 Identities=9% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCeEEEEEe-eC----CCCceE-EEEeCCCcEEEEeCCCCcEEEEEe-------------------cCCceeEEEeCCC-
Q 035621 180 DSVTAITCC-IG----SFNSII-ISCSMDCTCKFWRLLNGTHLSTVT-------------------FPCAIMGLALDPT- 233 (387)
Q Consensus 180 ~~i~~~~~~-~~----~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~- 233 (387)
..+..+++. .. .++.++ ++=+..+-|.++|+.+++..+... ....+..++++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 456777776 21 112333 333346789999999887654431 1236788999998
Q ss_pred ---CCeEEEEccCCcEEEEeccccccccccccceeEeec-ccccccEEEEEEe-cCCCEEEEEeCCCcEEEEECCC
Q 035621 234 ---ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRHDGVVVSVMMM-NEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 234 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
++.|+-....+. ++|.+.+...........+..+- ++....-..++.. .+|.++++--....|..|+..+
T Consensus 232 ~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 666666655432 23333322111111111111111 1111234456775 5777777777888999999876
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.70 E-value=12 Score=37.40 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=31.7
Q ss_pred CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc
Q 035621 85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF 121 (387)
Q Consensus 85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 121 (387)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4566677788899999999999999999999988764
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=53.52 E-value=83 Score=25.00 Aligned_cols=148 Identities=10% Similarity=-0.024 Sum_probs=80.2
Q ss_pred EEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce---
Q 035621 97 YLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML--- 172 (387)
Q Consensus 97 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--- 172 (387)
..++.+.+|.|+--....-.. ...++.. ..+..+........++..+..|.++-+...+..... ..+.++
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r-----~~G~~i~~~ 77 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-----GQGEPLTGK 77 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSS-----SCCEEGGGT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcC-----CCCeEeeee
Confidence 345556777776555432111 1123332 334444333344456777788987777664432221 122211
Q ss_pred EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-------CcEEEEEecCCceeEEEeC-CCCCeEEEEccCC
Q 035621 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-------GTHLSTVTFPCAIMGLALD-PTETDFFAAGSDG 244 (387)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg 244 (387)
..+. ....|.++... . ++.+++.++..|.++...+.. +.....+.....+..+... ..+..++..+.+|
T Consensus 78 i~L~-~~e~Iv~~~~~-~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 78 LTLP-PGATVDHMLME-S-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp CCCC-TTCCEEEEECC-C-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTS
T ss_pred ecCC-CCCEEEEEEEe-C-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCC
Confidence 1122 23456665332 2 246788889999999887743 2222223333455555555 3456888999999
Q ss_pred cEEEEeccc
Q 035621 245 LIYKGLLKY 253 (387)
Q Consensus 245 ~i~i~d~~~ 253 (387)
.+..+....
T Consensus 155 ~~lrf~~~e 163 (256)
T 1zvt_A 155 RMLMFPVSD 163 (256)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEEHHH
Confidence 998888765
No 383
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=51.66 E-value=1.1e+02 Score=25.90 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=27.1
Q ss_pred CEEEEecCCCcEEEEeCCC-CceeEEc--cCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 035621 96 SYLFTGGLSGNVYAISVPK-GDILRSF--SAHDKPVSCLKISP-DGSLLISGGDDG 147 (387)
Q Consensus 96 ~~l~~~~~dg~i~i~d~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg 147 (387)
..|.+|+..| +.+++... ++.-..+ ......|.+|++.| +...+.+++..|
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 4677777766 55555432 2222211 12245799999998 334455555444
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.76 E-value=36 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=26.3
Q ss_pred CceEEEEeCCCcEEEEeCCCCcEEEEEec
Q 035621 193 NSIIISCSMDCTCKFWRLLNGTHLSTVTF 221 (387)
Q Consensus 193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 221 (387)
..++++-+.|.++|+|++.+++++.....
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 37999999999999999999999988774
No 385
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=46.45 E-value=1.5e+02 Score=26.01 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=56.1
Q ss_pred CceeEEEcCccc--eeeeccccCCCCCeEEEEEccCC---CcccccC----------CCCCeeeEEeccC---CCEEEEe
Q 035621 40 PRRGLTFAGKPF--IAASHISPTTGSGSVHLYNLWSS---TPLHNIP----------VPEPVAPLATTAD---GSYLFTG 101 (387)
Q Consensus 40 ~v~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~---~~~~~~~----------~~~~v~~~~~~~~---~~~l~~~ 101 (387)
..+.|+|.|++. +.. +...|.|++++.... ..+..+. .......++|+|+ ..+|++.
T Consensus 15 ~P~~~a~~pdG~~rl~V-----~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFI-----LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SEEEEECCSSSSCCEEE-----EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEECCCCCeEEEE-----EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 467899999752 222 346789999975322 1111111 1346788999996 3344333
Q ss_pred -cC--C----------CcEEEEeCCCC----------ceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621 102 -GL--S----------GNVYAISVPKG----------DILRSFS--AHDKPVSCLKISPDGSLLISGGDDG 147 (387)
Q Consensus 102 -~~--d----------g~i~i~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg 147 (387)
+. + ..|.-|.+..+ +.+..+. .....-..|+|.|||.+.++.+..+
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 21 1 13444555321 2222222 1223467899999998777665543
No 386
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=45.70 E-value=79 Score=28.53 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=46.6
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC----cEEEEEe---cCCcee-EEEeCCCCCeEEEEccCCcEEE
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG----THLSTVT---FPCAIM-GLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~---~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 248 (387)
..++++.....+-..+..|+.+|.|.-..+... ..+..+. .+.+|. .+.+++++.+|++++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 467777766655577888999998765544322 1233333 246775 8999999999999988766654
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=45.12 E-value=98 Score=27.55 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=44.7
Q ss_pred CeEEEEEeeC----CCCceEEEEeCCCcEEEEeC-CCCc-------EEEEEe---cCCceeEEEeCCCCCeEEEEccCCc
Q 035621 181 SVTAITCCIG----SFNSIIISCSMDCTCKFWRL-LNGT-------HLSTVT---FPCAIMGLALDPTETDFFAAGSDGL 245 (387)
Q Consensus 181 ~i~~~~~~~~----~~~~~l~s~~~d~~i~iwd~-~~~~-------~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~ 245 (387)
..++|+...- ++-..+..|+.+|.|.=.-+ ..+. .+..+. .+.+|..+.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4577766543 33457888999998753333 2221 223333 3578999999999999999998876
Q ss_pred EEE
Q 035621 246 IYK 248 (387)
Q Consensus 246 i~i 248 (387)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.59 E-value=2.2e+02 Score=26.08 Aligned_cols=66 Identities=6% Similarity=0.098 Sum_probs=46.1
Q ss_pred cEEEEEEecCCCEEEEEeCC------------CcEEEEECCCccEEEEeecccCCCceeEEEEecCCCceeeEEEecCC
Q 035621 275 VVVSVMMMNEGKNLVSAAED------------GSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGK 341 (387)
Q Consensus 275 ~v~~~~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 341 (387)
..-.|+|+|.|++++.-..+ ..+.+.+..++++.+.+..+...++++++|++... ..-+.+-+.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~-tlfvniQHPGe 554 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK-TLFVGIQHPGE 554 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS-EEEEEEESTTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCC-EEEEEEECCCC
Confidence 45789999999977764332 24667788889988888888888999999987432 12334444444
No 389
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=40.15 E-value=83 Score=27.99 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=36.8
Q ss_pred CeEEEEccCCcEEEEeccccccccccccceeEeec-ccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
..++.|+.+|.|.-.-+.............+..+. .....+|..|.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 34777888998865544322110000001111111 123578899999999999999988876654
No 390
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=38.47 E-value=1.9e+02 Score=24.80 Aligned_cols=246 Identities=14% Similarity=-0.003 Sum_probs=118.4
Q ss_pred ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc-------------cccCCCCCeeeEEeccCCCEEEEecCCCcE
Q 035621 41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL-------------HNIPVPEPVAPLATTADGSYLFTGGLSGNV 107 (387)
Q Consensus 41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 107 (387)
|..++......+. -..||.|..|-......+ ..+.....|..++... .+.++-..+|.|
T Consensus 77 v~~va~G~~h~~~------l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~--~hs~al~~~G~v 148 (423)
T 3mvd_K 77 AVDISAGGMHNLV------LTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD--SHSACLLEDGRV 148 (423)
T ss_dssp EEEEEECSSEEEE------EETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS--SEEEEEETTSCE
T ss_pred ceEEeeCCCeEEE------EeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc--CeEEEEeCCCeE
Confidence 5555554433322 347899999976442211 1111233455554433 344455678899
Q ss_pred EEEeC--C-CCce---------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC-----------
Q 035621 108 YAISV--P-KGDI---------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD----------- 164 (387)
Q Consensus 108 ~i~d~--~-~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------- 164 (387)
+.|-. . .+++ ..........|..++... ...+.-..+|.|+.|-....-..-...
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 226 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRG 226 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTT
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccc
Confidence 99974 2 2221 001111234566776543 355566788999999653221110000
Q ss_pred CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-----------cEEEEEe-cCCceeEEEeCC
Q 035621 165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-----------THLSTVT-FPCAIMGLALDP 232 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~-~~~~v~~~~~~~ 232 (387)
......+..........|..++.... ..++.-..++.|..|-.... ....... ....|..++.
T Consensus 227 ~~~~~~p~~v~~~~~~~v~~i~~g~~---~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~-- 301 (423)
T 3mvd_K 227 KRDLLRPTQLIITRAKPFEAIWATNY---CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG-- 301 (423)
T ss_dssp TTTTSSCEEECCTTCCCEEEEEEETT---EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--
T ss_pred cccccCCeEEeecCCccEEEEEECCc---EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--
Confidence 00011122211222345666655422 33444367899999864321 1111111 1234554443
Q ss_pred CCCeEEEEccCCcEEEEecccccccccc---c-cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621 233 TETDFFAAGSDGLIYKGLLKYQSRQQMH---K-GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK 304 (387)
Q Consensus 233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 304 (387)
...+.++-..+|.|+.|=.......-.. . ...+.. ...-...|..++.... +-+.-..||.|+.|-...
T Consensus 302 G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~-v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTI-VKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEE-CTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceE-eccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 3445666677899999976542211100 0 001111 1112226777776543 334446899999997654
No 391
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=33.51 E-value=3e+02 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred ceEEEEeCCCcEE-EEeCCCCc-------EEEEE---ecCCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621 194 SIIISCSMDCTCK-FWRLLNGT-------HLSTV---TFPCAIMGLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 194 ~~l~s~~~d~~i~-iwd~~~~~-------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 248 (387)
..+..|+.+|.|. +.-..... .+..+ ..+.+|..+.++++..+|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 5678889999874 33322211 22222 24678999999999999999999887765
No 392
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=29.27 E-value=1.5e+02 Score=27.60 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=35.9
Q ss_pred eEEEEccCCcEEEEeccccccccccccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621 236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299 (387)
Q Consensus 236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 299 (387)
.++.|+.+|.|.-.-+.............+... ......+|..|.++++.++|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 577788888876432221111000000011110 1134668899999999999999988875554
No 393
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=27.50 E-value=3.3e+02 Score=24.45 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=45.3
Q ss_pred CeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CC--cEEEEEe--cCCce-eEEEeCCCCCeEEEEccCCcEEE
Q 035621 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NG--THLSTVT--FPCAI-MGLALDPTETDFFAAGSDGLIYK 248 (387)
Q Consensus 181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~--~~~~v-~~~~~~~~~~~l~~~~~dg~i~i 248 (387)
..+.|+.........+..|+.+|.|.-.-+. .+ ..+..+. ...+| ..+.++++..+|++++..+.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 4667776655434677788899988644332 21 2233333 35567 48999999999999998887776
No 394
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.93 E-value=4.1e+02 Score=24.87 Aligned_cols=150 Identities=9% Similarity=-0.015 Sum_probs=73.4
Q ss_pred cCCCEEEEecCCCcEEEEeCCCCcee--E--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621 93 ADGSYLFTGGLSGNVYAISVPKGDIL--R--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD 168 (387)
Q Consensus 93 ~~~~~l~~~~~dg~i~i~d~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 168 (387)
++....++-+.+|.|+--. +.-+ . .++. ...+..+........++.-+..|.++.....+..... ..
T Consensus 470 ~~e~v~v~ls~~GyiKr~~---g~~~~~~~~~~k~-~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~-----~~ 540 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAK---GHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-----GQ 540 (716)
T ss_dssp CCCCCCEEEETTTEEEECC---C----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC-------
T ss_pred CCceEEEEEecCCeEeccC---CCCcCccccccCC-CCeEEEEEEecCCCEEEEEecCCcEEEEEeeeccccc-----cc
Confidence 4455556666777665421 1111 1 1121 1223333223333445555666766555443322211 12
Q ss_pred ccceEeee--ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceeEEEeC-CCCCeEE
Q 035621 169 DLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLSTVTFPCAIMGLALD-PTETDFF 238 (387)
Q Consensus 169 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~-~~~~~l~ 238 (387)
+.++..+- .....|..+.... ++.+++.++..|.++...+... .....+.....+..+... ..+..++
T Consensus 541 G~~i~~ll~l~~~e~i~~~~~~~--~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~ 618 (716)
T 1zvu_A 541 GEPLTGKLTLPPGATVDHMLMES--DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 618 (716)
T ss_dssp -CBSTTTSCCCTTCCEEEEECCC--TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEE
T ss_pred CeeHHhccCCCCCCeEEEEEEec--CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEE
Confidence 22222221 1234555553322 3477888899999998876532 222223334455555554 3456788
Q ss_pred EEccCCcEEEEeccc
Q 035621 239 AAGSDGLIYKGLLKY 253 (387)
Q Consensus 239 ~~~~dg~i~i~d~~~ 253 (387)
..+.+|....|....
T Consensus 619 l~t~~g~~lrf~~~~ 633 (716)
T 1zvu_A 619 AITQAGRMLMFPVSD 633 (716)
T ss_dssp EEETTSEEEEEESTT
T ss_pred EEeCCCeEEEEEHHH
Confidence 899999999888764
No 395
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=25.68 E-value=3.1e+02 Score=23.38 Aligned_cols=105 Identities=9% Similarity=-0.032 Sum_probs=49.6
Q ss_pred cCCCcEEEEeCCCCc-----------eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621 102 GLSGNVYAISVPKGD-----------ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL 170 (387)
Q Consensus 102 ~~dg~i~i~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 170 (387)
..+|.|+.|-..... ...........|..++... ...+.-..||.|+.|=....-..-.........
T Consensus 259 ~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 336 (423)
T 3mvd_K 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVE 336 (423)
T ss_dssp TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEE
T ss_pred CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEEeCCCcEEEEECCCCCCCCCCCcccccc
Confidence 578888888543210 0111111134566666543 345555678999999653321111111000011
Q ss_pred ceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN 212 (387)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 212 (387)
....+..-...|..++.-. ...+.-..||.|+.|=...
T Consensus 337 ~p~~v~~l~~~v~~ia~G~----~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 337 KPTIVKKLTEKIVSVGCGE----VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEECTTCCSCEEEEEEET----TEEEEEETTSCEEEEECCT
T ss_pred CceEeccCCCCEEEEEcCC----CeEEEEcCCCCEEEECCCC
Confidence 1112222223566666543 2333346788888886543
No 396
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.88 E-value=3.4e+02 Score=24.77 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=35.7
Q ss_pred EEEEecCCCcEEEE-eCCCC----c-eeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621 97 YLFTGGLSGNVYAI-SVPKG----D-ILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIAT 151 (387)
Q Consensus 97 ~l~~~~~dg~i~i~-d~~~~----~-~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 151 (387)
.++.|+.+|.|.-. ....+ . .+..+. ....+|..|.++++...|++++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 56778888876533 32222 1 122222 24568899999999889999888876655
No 397
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=20.45 E-value=2.9e+02 Score=25.76 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=44.3
Q ss_pred eEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-C---cEEEEEe---cCCce-eEEEeCCCCCeEEEEccCCcEEEE
Q 035621 182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLN-G---THLSTVT---FPCAI-MGLALDPTETDFFAAGSDGLIYKG 249 (387)
Q Consensus 182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~---~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~ 249 (387)
.++|+.....+-..+..|+.+|.|.-.-+.. . ..+..+. .+.+| ..+.++++..+|++++..+.+++-
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qvP 476 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 476 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEEE
Confidence 4555555544446788889999886544432 1 2333332 34566 689999999999999888776653
Done!