Query 035624
Match_columns 775
No_of_seqs 243 out of 1944
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3E-145 6E-150 1297.1 81.5 745 8-773 10-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-118 3E-123 1051.5 54.7 733 22-774 4-767 (769)
3 PRK03562 glutathione-regulated 100.0 8.4E-47 1.8E-51 440.4 44.6 367 47-435 4-378 (621)
4 PRK10669 putative cation:proto 100.0 1.5E-46 3.3E-51 436.8 43.7 373 49-439 7-390 (558)
5 PRK03659 glutathione-regulated 100.0 1.7E-45 3.7E-50 428.9 44.7 368 48-437 5-377 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 8.3E-45 1.8E-49 402.1 43.4 379 46-440 4-387 (397)
7 PRK05326 potassium/proton anti 100.0 1.5E-39 3.1E-44 378.1 37.6 382 45-441 3-391 (562)
8 TIGR00932 2a37 transporter, mo 100.0 3.1E-35 6.7E-40 312.4 31.5 270 58-340 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 4E-39 8.7E-44 358.7 -4.1 368 55-438 3-379 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 2.7E-33 5.9E-38 280.8 30.2 370 50-436 8-387 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9.9E-27 2.2E-31 267.7 38.8 353 49-409 14-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 4.1E-26 8.9E-31 262.1 36.7 366 54-437 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.5E-23 9.7E-28 230.6 38.2 378 48-438 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 6.4E-23 1.4E-27 216.0 28.8 374 45-434 4-382 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 2.3E-21 5E-26 222.7 37.2 363 58-438 19-417 (559)
16 PRK11175 universal stress prot 99.8 2.6E-19 5.7E-24 193.4 19.8 272 461-771 5-300 (305)
17 PRK14853 nhaA pH-dependent sod 99.8 2.2E-15 4.8E-20 164.5 34.4 303 111-441 66-399 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.7 2.8E-14 6.1E-19 146.2 27.8 340 56-405 22-382 (467)
19 KOG1965 Sodium/hydrogen exchan 99.6 1.1E-13 2.4E-18 153.6 21.6 381 49-438 36-455 (575)
20 cd01988 Na_H_Antiporter_C The 99.5 1.7E-13 3.7E-18 128.4 12.0 131 461-611 1-131 (132)
21 TIGR00773 NhaA Na+/H+ antiport 99.5 1.3E-11 2.9E-16 132.6 25.3 265 111-406 56-344 (373)
22 PRK15456 universal stress prot 99.3 1E-11 2.2E-16 118.5 10.0 135 461-611 4-141 (142)
23 PRK15005 universal stress prot 99.3 1.5E-11 3.3E-16 117.3 10.2 137 461-611 4-143 (144)
24 PRK14856 nhaA pH-dependent sod 99.2 7.7E-09 1.7E-13 113.1 27.9 295 110-436 71-430 (438)
25 cd01989 STK_N The N-terminal d 99.2 8.4E-11 1.8E-15 112.5 10.8 141 461-613 1-145 (146)
26 PRK15118 universal stress glob 99.2 1.3E-10 2.9E-15 111.0 10.4 135 461-613 5-139 (144)
27 PRK09982 universal stress prot 99.2 1.4E-10 3E-15 110.8 10.2 134 461-612 5-138 (142)
28 PF00582 Usp: Universal stress 99.1 1.8E-10 3.9E-15 107.8 7.5 134 461-612 4-140 (140)
29 PRK09560 nhaA pH-dependent sod 99.1 2.8E-08 6E-13 107.3 24.9 294 111-435 63-383 (389)
30 cd01987 USP_OKCHK USP domain i 99.1 3.8E-10 8.3E-15 104.8 9.1 122 461-611 1-123 (124)
31 PRK09561 nhaA pH-dependent sod 99.0 4.8E-08 1E-12 105.2 24.3 290 111-434 63-381 (388)
32 PRK14855 nhaA pH-dependent sod 99.0 5.5E-08 1.2E-12 106.1 24.7 289 111-434 67-411 (423)
33 PRK14854 nhaA pH-dependent sod 99.0 1.2E-07 2.6E-12 101.8 25.0 290 111-434 60-376 (383)
34 PRK10116 universal stress prot 99.0 2.6E-09 5.7E-14 101.7 10.5 136 460-613 4-139 (142)
35 PRK11175 universal stress prot 98.9 4.1E-09 8.8E-14 113.9 9.0 142 460-615 153-302 (305)
36 PF06965 Na_H_antiport_1: Na+/ 98.8 3.9E-08 8.4E-13 106.0 14.4 268 110-409 58-354 (378)
37 cd00293 USP_Like Usp: Universa 98.8 2.5E-08 5.5E-13 92.0 9.1 130 461-611 1-130 (130)
38 cd01989 STK_N The N-terminal d 98.7 1.1E-07 2.4E-12 90.9 12.2 124 633-771 1-145 (146)
39 COG3004 NhaA Na+/H+ antiporter 98.7 2.8E-06 6.2E-11 88.0 22.8 288 117-436 72-385 (390)
40 KOG1966 Sodium/hydrogen exchan 98.6 1.3E-08 2.9E-13 113.0 3.4 359 61-437 55-448 (670)
41 PRK09982 universal stress prot 98.6 1.8E-07 4E-12 89.2 8.7 121 631-770 3-138 (142)
42 PRK15005 universal stress prot 98.6 5.3E-07 1.1E-11 85.9 11.3 124 631-770 2-144 (144)
43 cd01987 USP_OKCHK USP domain i 98.5 2.5E-07 5.4E-12 85.8 8.5 120 633-769 1-123 (124)
44 cd01988 Na_H_Antiporter_C The 98.5 1.4E-06 3E-11 81.3 12.4 123 633-770 1-132 (132)
45 COG0589 UspA Universal stress 98.5 1.3E-06 2.9E-11 83.4 11.6 141 460-613 6-152 (154)
46 PF00582 Usp: Universal stress 98.4 1E-06 2.2E-11 82.2 8.8 125 631-770 2-140 (140)
47 PRK15118 universal stress glob 98.4 1.1E-06 2.4E-11 83.7 8.5 124 631-772 3-140 (144)
48 PRK15456 universal stress prot 98.3 5.4E-06 1.2E-10 78.9 12.3 122 631-770 2-142 (142)
49 PRK10116 universal stress prot 98.3 1.3E-06 2.8E-11 83.0 7.1 123 631-770 3-138 (142)
50 cd00293 USP_Like Usp: Universa 98.2 1.4E-05 3.1E-10 73.4 11.2 122 633-769 1-130 (130)
51 PF03812 KdgT: 2-keto-3-deoxyg 97.8 0.0023 5E-08 67.4 20.0 247 115-439 50-312 (314)
52 PRK12460 2-keto-3-deoxyglucona 97.8 0.0036 7.7E-08 66.3 20.9 251 116-441 51-308 (312)
53 PRK12652 putative monovalent c 97.6 0.00017 3.7E-09 78.9 9.3 108 460-577 6-122 (357)
54 PF05684 DUF819: Protein of un 97.6 0.09 1.9E-06 58.4 29.9 297 71-412 24-352 (378)
55 COG0385 Predicted Na+-dependen 97.5 0.11 2.3E-06 55.7 27.0 147 107-261 35-191 (319)
56 PRK12652 putative monovalent c 97.4 0.0009 2E-08 73.3 10.9 98 631-730 5-124 (357)
57 COG3180 AbrB Putative ammonia 97.4 0.14 3E-06 55.3 26.6 325 49-439 7-349 (352)
58 COG0786 GltS Na+/glutamate sym 97.3 0.028 6E-07 61.0 21.0 301 50-403 11-360 (404)
59 COG0798 ACR3 Arsenite efflux p 97.3 0.089 1.9E-06 56.2 24.3 232 108-393 49-288 (342)
60 PF03616 Glt_symporter: Sodium 97.2 0.21 4.6E-06 55.4 27.3 91 291-390 246-344 (368)
61 TIGR00698 conserved hypothetic 97.2 0.42 9.1E-06 52.1 27.9 103 67-177 26-130 (335)
62 COG0589 UspA Universal stress 97.0 0.0084 1.8E-07 56.8 12.1 127 631-772 5-153 (154)
63 TIGR00793 kdgT 2-keto-3-deoxyg 97.0 0.022 4.7E-07 59.8 15.6 250 116-439 51-312 (314)
64 PF13593 DUF4137: SBF-like CPA 96.8 0.75 1.6E-05 49.9 26.2 146 109-260 30-187 (313)
65 TIGR00210 gltS sodium--glutama 96.8 0.45 9.8E-06 53.2 24.9 104 50-164 9-121 (398)
66 PRK03562 glutathione-regulated 96.8 0.05 1.1E-06 64.7 18.4 130 57-196 225-356 (621)
67 TIGR00832 acr3 arsenical-resis 96.7 1.2 2.6E-05 48.7 27.0 98 114-216 47-149 (328)
68 PF03601 Cons_hypoth698: Conse 96.7 0.25 5.5E-06 53.2 21.3 101 69-178 23-125 (305)
69 PRK03659 glutathione-regulated 96.7 0.067 1.4E-06 63.4 18.6 110 60-179 225-334 (601)
70 TIGR00841 bass bile acid trans 96.6 1.2 2.6E-05 47.7 25.8 99 114-217 12-114 (286)
71 PRK10490 sensor protein KdpD; 96.4 0.019 4.1E-07 71.3 12.2 127 457-614 248-375 (895)
72 PF03956 DUF340: Membrane prot 96.3 0.026 5.7E-07 56.4 9.7 127 76-218 2-133 (191)
73 PRK05274 2-keto-3-deoxyglucona 96.1 0.2 4.3E-06 54.4 16.1 47 117-163 54-100 (326)
74 PF05145 AmoA: Putative ammoni 96.1 2.7 5.9E-05 45.7 25.0 154 273-438 158-315 (318)
75 PF03390 2HCT: 2-hydroxycarbox 96.0 1.6 3.5E-05 48.5 22.9 318 50-411 31-394 (414)
76 PRK10669 putative cation:proto 95.9 0.3 6.4E-06 57.6 17.9 101 67-177 243-343 (558)
77 PLN03159 cation/H(+) antiporte 95.7 0.33 7.2E-06 59.6 17.8 109 61-179 282-393 (832)
78 PF06826 Asp-Al_Ex: Predicted 95.5 0.12 2.7E-06 50.5 10.8 113 68-189 19-136 (169)
79 TIGR00932 2a37 transporter, mo 95.5 0.43 9.2E-06 50.7 16.0 142 278-429 3-148 (273)
80 PF01758 SBF: Sodium Bile acid 95.5 0.4 8.8E-06 47.8 14.6 103 114-221 2-109 (187)
81 COG0475 KefB Kef-type K+ trans 95.4 0.62 1.4E-05 52.3 17.2 117 52-177 223-340 (397)
82 TIGR00930 2a30 K-Cl cotranspor 95.2 12 0.00026 46.9 31.7 133 456-613 572-709 (953)
83 PRK03818 putative transporter; 95.1 0.2 4.3E-06 58.6 12.6 105 75-188 33-141 (552)
84 COG3493 CitS Na+/citrate sympo 94.9 1.8 3.8E-05 47.0 17.6 57 355-411 355-413 (438)
85 cd01984 AANH_like Adenine nucl 94.7 0.075 1.6E-06 45.6 5.8 49 555-609 35-84 (86)
86 PRK10490 sensor protein KdpD; 94.6 0.096 2.1E-06 65.1 8.8 95 631-730 250-347 (895)
87 COG2855 Predicted membrane pro 94.4 8.9 0.00019 41.5 25.8 105 66-179 31-135 (334)
88 PRK05326 potassium/proton anti 94.2 0.84 1.8E-05 53.8 15.2 125 275-408 14-143 (562)
89 PF03601 Cons_hypoth698: Conse 94.0 1.3 2.9E-05 47.6 14.9 147 291-444 25-177 (305)
90 TIGR03802 Asp_Ala_antiprt aspa 93.8 0.42 9.2E-06 56.1 11.4 115 69-190 412-531 (562)
91 TIGR01625 YidE_YbjL_dupl AspT/ 93.6 0.58 1.3E-05 45.1 10.0 111 73-190 22-138 (154)
92 COG2205 KdpD Osmosensitive K+ 93.2 0.38 8.2E-06 57.0 9.5 128 457-613 246-374 (890)
93 TIGR03802 Asp_Ala_antiprt aspa 93.1 0.49 1.1E-05 55.6 10.4 114 55-185 13-135 (562)
94 PRK04972 putative transporter; 92.4 0.61 1.3E-05 54.7 10.0 104 68-188 33-140 (558)
95 TIGR03082 Gneg_AbrB_dup membra 92.2 4.4 9.5E-05 39.2 14.1 120 276-405 4-127 (156)
96 COG2855 Predicted membrane pro 92.1 1.7 3.7E-05 46.7 12.0 111 285-402 31-143 (334)
97 TIGR00844 c_cpa1 na(+)/h(+) an 91.7 3.9 8.5E-05 49.3 15.4 68 324-396 75-146 (810)
98 COG2205 KdpD Osmosensitive K+ 91.6 0.6 1.3E-05 55.4 8.4 113 631-758 248-363 (890)
99 TIGR00831 a_cpa1 Na+/H+ antipo 90.7 2.9 6.4E-05 48.8 13.3 114 275-397 6-123 (525)
100 PRK04972 putative transporter; 90.5 1.4 3E-05 51.7 10.4 130 53-189 386-525 (558)
101 PF03977 OAD_beta: Na+-transpo 90.4 29 0.00063 37.5 24.2 273 52-374 4-291 (360)
102 TIGR00698 conserved hypothetic 90.4 9.4 0.0002 41.7 15.8 138 291-436 30-175 (335)
103 TIGR03082 Gneg_AbrB_dup membra 89.9 2.8 6.1E-05 40.5 10.3 101 55-168 2-108 (156)
104 TIGR00783 ccs citrate carrier 89.8 35 0.00075 37.4 20.3 117 291-411 203-327 (347)
105 TIGR00210 gltS sodium--glutama 89.6 10 0.00022 42.5 15.8 161 51-217 222-391 (398)
106 COG2985 Predicted permease [Ge 89.4 1.8 3.9E-05 48.5 9.3 77 113-193 62-147 (544)
107 PRK12460 2-keto-3-deoxyglucona 89.4 3 6.4E-05 44.7 10.7 86 75-172 169-254 (312)
108 TIGR00946 2a69 he Auxin Efflux 88.6 9.5 0.00021 41.5 14.6 134 68-216 178-313 (321)
109 COG1346 LrgB Putative effector 88.0 34 0.00073 35.0 17.7 83 349-436 89-171 (230)
110 PRK03818 putative transporter; 87.9 10 0.00022 44.6 14.9 106 75-187 403-514 (552)
111 PF05145 AmoA: Putative ammoni 87.3 5.8 0.00013 43.2 11.7 77 50-138 154-232 (318)
112 TIGR02432 lysidine_TilS_N tRNA 85.6 3.6 7.7E-05 40.9 8.4 95 633-731 1-111 (189)
113 TIGR00808 malonate_madM malona 85.5 7.7 0.00017 38.6 10.1 110 50-166 15-135 (254)
114 PF03616 Glt_symporter: Sodium 85.5 8.5 0.00018 42.8 12.0 111 52-169 225-339 (368)
115 cd01984 AANH_like Adenine nucl 85.2 2 4.2E-05 36.7 5.5 34 634-668 1-34 (86)
116 TIGR03136 malonate_biotin Na+- 85.2 63 0.0014 35.4 22.0 273 51-375 23-329 (399)
117 COG1646 Predicted phosphate-bi 84.6 51 0.0011 33.8 16.1 64 544-615 16-80 (240)
118 PF03977 OAD_beta: Na+-transpo 84.5 4.3 9.2E-05 43.6 8.4 108 323-443 67-180 (360)
119 COG0786 GltS Na+/glutamate sym 84.3 10 0.00022 41.8 11.4 116 48-170 222-341 (404)
120 PRK05253 sulfate adenylyltrans 84.2 3.1 6.8E-05 44.8 7.6 95 631-731 27-139 (301)
121 cd01992 PP-ATPase N-terminal d 83.3 4.4 9.6E-05 40.0 7.9 96 633-731 1-108 (185)
122 PF01171 ATP_bind_3: PP-loop f 83.1 3.4 7.3E-05 41.0 6.9 38 633-670 1-38 (182)
123 PRK04288 antiholin-like protei 80.5 75 0.0016 32.8 17.7 81 352-436 94-174 (232)
124 TIGR01109 Na_pump_decarbB sodi 80.5 90 0.002 33.7 18.9 82 57-144 7-94 (354)
125 TIGR03136 malonate_biotin Na+- 79.7 26 0.00057 38.2 12.3 110 322-443 102-217 (399)
126 PF03956 DUF340: Membrane prot 79.7 14 0.00031 36.9 9.9 50 353-402 57-106 (191)
127 PF00999 Na_H_Exchanger: Sodiu 79.4 0.6 1.3E-05 52.0 0.0 117 50-176 212-332 (380)
128 PRK10711 hypothetical protein; 79.0 73 0.0016 32.9 14.8 79 354-436 91-169 (231)
129 cd01993 Alpha_ANH_like_II This 79.0 6.8 0.00015 38.5 7.5 38 633-670 1-40 (185)
130 COG3180 AbrB Putative ammonia 78.6 19 0.0004 39.4 10.9 120 38-167 174-297 (352)
131 COG0025 NhaP NhaP-type Na+/H+ 77.7 48 0.001 37.7 14.7 69 325-398 64-136 (429)
132 TIGR02039 CysD sulfate adenyly 76.6 7.7 0.00017 41.6 7.4 95 632-732 20-132 (294)
133 PF01889 DUF63: Membrane prote 76.4 1.1E+02 0.0024 32.5 16.2 44 38-86 19-69 (273)
134 COG2431 Predicted membrane pro 75.3 9.6 0.00021 39.8 7.3 89 74-175 108-201 (297)
135 TIGR00659 conserved hypothetic 74.7 1.1E+02 0.0023 31.6 15.9 79 354-436 90-168 (226)
136 TIGR00783 ccs citrate carrier 73.7 25 0.00053 38.5 10.3 108 65-177 196-307 (347)
137 PF03547 Mem_trans: Membrane t 72.7 28 0.0006 38.7 11.1 107 296-405 10-118 (385)
138 COG0679 Predicted permeases [G 72.2 82 0.0018 34.1 14.2 146 64-222 160-306 (311)
139 KOG1650 Predicted K+/H+-antipo 68.7 1.1E+02 0.0024 37.5 15.6 66 113-179 313-378 (769)
140 COG1346 LrgB Putative effector 68.6 1.5E+02 0.0032 30.5 14.1 59 104-164 60-118 (230)
141 PF02040 ArsB: Arsenical pump 68.5 2.1E+02 0.0046 32.4 19.8 37 180-216 117-153 (423)
142 PRK12563 sulfate adenylyltrans 67.4 11 0.00024 40.6 6.0 44 631-674 37-80 (312)
143 PRK09903 putative transporter 67.2 1E+02 0.0022 33.4 13.6 107 70-189 171-279 (314)
144 KOG2310 DNA repair exonuclease 66.8 10 0.00022 43.2 5.7 82 556-644 40-131 (646)
145 COG4651 RosB Kef-type K+ trans 64.6 1.9E+02 0.0042 31.0 14.0 64 112-177 278-343 (408)
146 COG0037 MesJ tRNA(Ile)-lysidin 63.7 40 0.00086 36.0 9.6 37 632-670 22-58 (298)
147 PRK12342 hypothetical protein; 63.4 16 0.00034 38.4 6.1 102 637-754 30-146 (254)
148 PRK03359 putative electron tra 63.1 22 0.00047 37.4 7.1 106 637-754 31-149 (256)
149 PRK04125 murein hydrolase regu 62.7 97 0.0021 29.4 10.6 93 48-153 8-108 (141)
150 PRK15475 oxaloacetate decarbox 62.1 13 0.00028 40.4 5.2 128 322-465 131-269 (433)
151 PF05982 DUF897: Domain of unk 61.7 61 0.0013 35.1 10.1 91 75-177 183-276 (327)
152 PRK15476 oxaloacetate decarbox 61.0 14 0.0003 40.2 5.2 110 322-442 131-250 (433)
153 PRK15477 oxaloacetate decarbox 61.0 14 0.0003 40.2 5.2 109 323-442 132-250 (433)
154 COG3329 Predicted permease [Ge 60.8 1.1E+02 0.0023 32.8 11.4 116 292-417 16-137 (372)
155 PRK15475 oxaloacetate decarbox 60.2 2.7E+02 0.0059 30.7 20.7 124 244-375 231-363 (433)
156 COG2985 Predicted permease [Ge 60.1 32 0.00069 39.0 7.9 110 74-191 397-511 (544)
157 cd01713 PAPS_reductase This do 59.5 29 0.00063 33.1 7.0 37 633-670 1-37 (173)
158 COG1902 NemA NADH:flavin oxido 58.1 1.5E+02 0.0032 32.9 12.8 230 464-733 74-325 (363)
159 PRK10660 tilS tRNA(Ile)-lysidi 58.0 41 0.00088 38.4 8.8 58 631-693 15-73 (436)
160 COG1883 OadB Na+-transporting 56.6 6.7 0.00014 41.1 1.9 125 323-466 82-214 (375)
161 PRK01658 holin-like protein; V 56.4 1.6E+02 0.0035 27.2 10.8 97 48-157 5-109 (122)
162 PF01012 ETF: Electron transfe 55.9 27 0.00059 33.7 6.0 80 641-729 14-100 (164)
163 TIGR01625 YidE_YbjL_dupl AspT/ 54.9 43 0.00094 32.3 7.1 92 293-389 22-121 (154)
164 PRK01821 hypothetical protein; 53.3 1.8E+02 0.0039 27.4 10.6 98 48-154 10-111 (133)
165 PRK15477 oxaloacetate decarbox 52.3 3.7E+02 0.0079 29.8 21.5 123 245-375 232-363 (433)
166 PRK15476 oxaloacetate decarbox 51.5 3.7E+02 0.0081 29.7 21.5 123 245-375 232-363 (433)
167 TIGR01109 Na_pump_decarbB sodi 51.1 58 0.0012 35.1 7.7 108 322-442 60-179 (354)
168 COG3263 NhaP-type Na+/H+ and K 50.5 2E+02 0.0043 32.6 11.8 71 320-394 60-132 (574)
169 COG3633 SstT Na+/serine sympor 50.5 35 0.00075 36.1 5.9 29 65-97 6-34 (407)
170 PF04172 LrgB: LrgB-like famil 49.5 3.1E+02 0.0066 28.1 16.1 80 353-436 79-158 (215)
171 COG2117 Predicted subunit of t 48.8 15 0.00033 35.3 2.7 96 633-737 2-114 (198)
172 PF03390 2HCT: 2-hydroxycarbox 48.7 3E+02 0.0065 31.0 13.2 105 68-177 267-374 (414)
173 PF04172 LrgB: LrgB-like famil 48.7 2.6E+02 0.0057 28.6 11.9 71 118-191 59-130 (215)
174 COG3969 Predicted phosphoadeno 48.4 23 0.0005 38.2 4.3 38 631-668 27-65 (407)
175 cd01712 ThiI ThiI is required 45.8 46 0.001 32.5 6.0 34 633-670 1-34 (177)
176 COG3199 Predicted inorganic po 44.9 67 0.0014 34.9 7.1 92 647-749 34-128 (355)
177 PRK04288 antiholin-like protei 43.3 4E+02 0.0086 27.6 14.6 59 104-164 63-121 (232)
178 COG1883 OadB Na+-transporting 42.3 4.5E+02 0.0099 28.0 14.5 122 50-176 18-145 (375)
179 COG3371 Predicted membrane pro 41.6 2.2E+02 0.0047 28.2 9.5 61 69-140 73-133 (181)
180 PRK12933 secD preprotein trans 40.5 6.3E+02 0.014 30.1 14.7 53 139-191 464-522 (604)
181 PRK08185 hypothetical protein; 40.3 1.6E+02 0.0034 31.6 9.2 99 554-662 23-125 (283)
182 TIGR00840 b_cpa1 sodium/hydrog 39.9 2.2E+02 0.0048 33.6 11.2 71 324-399 69-150 (559)
183 TIGR00793 kdgT 2-keto-3-deoxyg 39.6 1.7E+02 0.0036 31.5 9.0 75 76-162 175-249 (314)
184 PRK10696 tRNA 2-thiocytidine b 39.4 1E+02 0.0022 32.3 7.7 39 631-669 29-69 (258)
185 COG3748 Predicted membrane pro 39.2 3.1E+02 0.0067 29.7 10.7 40 324-366 226-266 (407)
186 PF01884 PcrB: PcrB family; I 38.6 4.7E+02 0.01 27.1 17.1 91 546-655 10-108 (230)
187 cd01995 ExsB ExsB is a transcr 38.3 93 0.002 30.0 6.8 86 633-731 1-88 (169)
188 cd06274 PBP1_FruR Ligand bindi 37.4 4.4E+02 0.0096 26.8 12.2 48 525-575 15-62 (264)
189 cd06285 PBP1_LacI_like_7 Ligan 37.2 2.2E+02 0.0047 29.2 9.8 72 523-615 13-87 (265)
190 PRK14561 hypothetical protein; 36.9 65 0.0014 32.3 5.4 32 633-669 2-33 (194)
191 PRK12857 fructose-1,6-bisphosp 36.8 1.9E+02 0.0041 31.0 9.1 100 554-662 28-131 (284)
192 cd01986 Alpha_ANH_like Adenine 36.3 1.4E+02 0.0031 26.1 7.0 73 634-731 1-73 (103)
193 PRK12737 gatY tagatose-bisphos 35.9 2.1E+02 0.0045 30.6 9.3 115 542-667 18-138 (284)
194 cd04734 OYE_like_3_FMN Old yel 35.3 2.5E+02 0.0055 30.8 10.3 127 584-731 185-320 (343)
195 cd01118 ArsB_permease Anion pe 34.9 6.9E+02 0.015 27.9 19.8 24 62-85 10-33 (416)
196 PRK06806 fructose-bisphosphate 34.9 2.3E+02 0.0049 30.3 9.4 115 542-667 18-138 (281)
197 COG1380 Putative effector of m 34.7 3.9E+02 0.0084 25.0 10.2 102 46-155 4-108 (128)
198 TIGR00659 conserved hypothetic 34.6 5.3E+02 0.012 26.6 14.4 75 114-191 65-140 (226)
199 PF03812 KdgT: 2-keto-3-deoxyg 34.3 1.5E+02 0.0033 32.0 7.8 74 76-161 175-248 (314)
200 cd06298 PBP1_CcpA_like Ligand- 34.1 2.6E+02 0.0056 28.5 9.8 73 523-615 13-87 (268)
201 PF05684 DUF819: Protein of un 33.9 5.8E+02 0.013 28.5 12.8 94 319-420 52-151 (378)
202 PRK06801 hypothetical protein; 33.2 3.4E+02 0.0074 29.1 10.4 110 542-662 18-131 (286)
203 TIGR00342 thiazole biosynthesi 32.9 2.9E+02 0.0064 30.7 10.4 36 631-670 172-207 (371)
204 cd01994 Alpha_ANH_like_IV This 31.6 1.7E+02 0.0036 29.4 7.4 91 633-729 1-98 (194)
205 COG3493 CitS Na+/citrate sympo 31.6 7.1E+02 0.015 27.8 12.2 109 64-177 281-393 (438)
206 TIGR01858 tag_bisphos_ald clas 30.9 2.7E+02 0.0058 29.7 9.1 105 554-667 26-136 (282)
207 PRK12738 kbaY tagatose-bisphos 30.7 2.9E+02 0.0064 29.5 9.4 105 554-667 28-138 (286)
208 KOG2718 Na+-bile acid cotransp 30.7 5.8E+02 0.013 28.4 11.8 31 114-144 117-147 (371)
209 TIGR00268 conserved hypothetic 30.3 99 0.0021 32.3 5.8 36 631-670 12-47 (252)
210 COG0385 Predicted Na+-dependen 30.2 4.1E+02 0.009 28.9 10.4 104 326-437 42-151 (319)
211 TIGR02057 PAPS_reductase phosp 29.7 2.4E+02 0.0052 29.0 8.4 41 631-674 25-65 (226)
212 cd02801 DUS_like_FMN Dihydrour 29.2 6.1E+02 0.013 25.6 11.8 141 558-731 70-218 (231)
213 PF13593 DUF4137: SBF-like CPA 29.2 5.7E+02 0.012 27.7 11.6 44 295-341 7-50 (313)
214 PF01507 PAPS_reduct: Phosphoa 29.1 1.1E+02 0.0023 29.4 5.5 34 633-670 1-34 (174)
215 cd00947 TBP_aldolase_IIB Tagat 29.1 3.2E+02 0.007 29.0 9.3 114 543-667 14-133 (276)
216 TIGR00884 guaA_Cterm GMP synth 28.8 1.9E+02 0.0041 31.4 7.7 36 632-670 17-52 (311)
217 PF03547 Mem_trans: Membrane t 28.6 8.1E+02 0.018 26.9 22.6 85 293-381 244-335 (385)
218 TIGR01521 FruBisAldo_II_B fruc 28.4 3.1E+02 0.0067 30.2 9.2 109 543-662 17-137 (347)
219 PF02355 SecD_SecF: Protein ex 28.2 6.1E+02 0.013 25.3 15.3 17 244-260 173-189 (189)
220 PF02601 Exonuc_VII_L: Exonucl 28.1 82 0.0018 34.1 4.9 68 631-731 14-87 (319)
221 PRK05835 fructose-bisphosphate 28.0 3.4E+02 0.0075 29.3 9.4 115 542-667 17-138 (307)
222 COG2086 FixA Electron transfer 27.9 1.7E+02 0.0036 30.9 6.8 106 639-755 34-149 (260)
223 PRK10577 iron-hydroxamate tran 27.5 1.2E+03 0.025 28.3 15.1 24 66-89 392-415 (668)
224 KOG3826 Na+/H+ antiporter [Ino 27.4 61 0.0013 33.2 3.3 118 54-179 103-228 (252)
225 PRK05274 2-keto-3-deoxyglucona 27.1 3.1E+02 0.0067 30.0 8.9 46 116-161 205-250 (326)
226 PF03652 UPF0081: Uncharacteri 26.9 2.8E+02 0.0062 26.0 7.6 61 553-615 36-97 (135)
227 COG2035 Predicted membrane pro 26.6 7.9E+02 0.017 26.1 15.5 46 47-97 60-107 (276)
228 PRK15445 arsenical pump membra 26.1 9.7E+02 0.021 26.9 21.1 29 180-208 118-146 (427)
229 cd01997 GMP_synthase_C The C-t 25.8 2.3E+02 0.0049 30.5 7.6 35 633-670 1-35 (295)
230 cd02803 OYE_like_FMN_family Ol 25.5 8.6E+02 0.019 26.1 12.8 84 640-729 223-314 (327)
231 cd06319 PBP1_ABC_sugar_binding 25.4 6.5E+02 0.014 25.6 11.1 75 523-615 13-89 (277)
232 PRK10711 hypothetical protein; 25.2 7.8E+02 0.017 25.5 12.4 59 104-164 58-116 (231)
233 PRK13399 fructose-1,6-bisphosp 25.0 4E+02 0.0088 29.3 9.3 110 542-662 18-139 (347)
234 PF06181 DUF989: Protein of un 24.9 8.7E+02 0.019 26.0 13.6 38 325-365 230-268 (300)
235 PRK00536 speE spermidine synth 24.5 78 0.0017 33.4 3.7 30 631-667 73-102 (262)
236 cd01990 Alpha_ANH_like_I This 24.3 2.5E+02 0.0054 27.9 7.3 34 634-670 1-34 (202)
237 PF02844 GARS_N: Phosphoribosy 24.1 32 0.00069 30.6 0.6 80 633-742 2-81 (100)
238 PRK09197 fructose-bisphosphate 23.6 5.5E+02 0.012 28.3 10.0 180 543-729 22-259 (350)
239 cd01536 PBP1_ABC_sugar_binding 23.5 5.2E+02 0.011 26.0 9.8 47 524-575 14-62 (267)
240 TIGR00832 acr3 arsenical-resis 23.4 9.8E+02 0.021 26.0 13.4 78 355-437 76-157 (328)
241 PF13194 DUF4010: Domain of un 23.2 8E+02 0.017 24.9 15.6 60 153-215 9-70 (211)
242 PRK09195 gatY tagatose-bisphos 23.1 4.5E+02 0.0098 28.1 9.1 105 554-667 28-138 (284)
243 cd00946 FBP_aldolase_IIA Class 23.0 7.4E+02 0.016 27.3 10.9 110 554-667 26-164 (345)
244 TIGR00032 argG argininosuccina 22.9 1.2E+02 0.0025 34.2 4.9 34 633-670 1-34 (394)
245 cd06275 PBP1_PurR Ligand-bindi 22.7 5E+02 0.011 26.4 9.5 48 523-575 13-62 (269)
246 TIGR01520 FruBisAldo_II_A fruc 22.7 7.8E+02 0.017 27.3 10.9 106 554-662 37-169 (357)
247 COG2201 CheB Chemotaxis respon 22.6 4.8E+02 0.01 28.8 9.3 45 557-611 36-80 (350)
248 PRK13523 NADPH dehydrogenase N 21.8 3.9E+02 0.0084 29.3 8.6 121 584-730 186-309 (337)
249 cd06281 PBP1_LacI_like_5 Ligan 21.6 4.1E+02 0.0088 27.2 8.6 47 523-574 13-61 (269)
250 COG2431 Predicted membrane pro 21.5 1E+03 0.022 25.4 16.0 45 358-402 169-213 (297)
251 COG1055 ArsB Na+/H+ antiporter 21.5 1.2E+03 0.026 26.4 17.8 34 180-216 121-154 (424)
252 PF06939 DUF1286: Protein of u 21.4 1.7E+02 0.0037 26.5 4.5 51 38-88 60-110 (114)
253 TIGR00167 cbbA ketose-bisphosp 21.3 5.9E+02 0.013 27.3 9.6 100 554-662 28-134 (288)
254 PRK10712 PTS system fructose-s 21.1 4.7E+02 0.01 30.9 9.5 185 227-442 263-460 (563)
255 TIGR01859 fruc_bis_ald_ fructo 21.0 5.8E+02 0.013 27.2 9.5 100 554-661 26-130 (282)
256 PRK09824 PTS system beta-gluco 20.9 1.2E+03 0.025 28.1 12.8 30 148-177 156-185 (627)
257 PF03686 UPF0146: Uncharacteri 20.8 1.1E+02 0.0024 28.4 3.4 32 549-580 76-107 (127)
258 PLN00200 argininosuccinate syn 20.8 2.7E+02 0.0059 31.4 7.2 37 631-670 5-41 (404)
259 COG0175 CysH 3'-phosphoadenosi 20.7 2.5E+02 0.0053 29.6 6.6 36 634-673 42-77 (261)
260 PF02844 GARS_N: Phosphoribosy 20.6 85 0.0019 27.9 2.6 24 554-577 48-71 (100)
261 PRK09196 fructose-1,6-bisphosp 20.6 5.8E+02 0.013 28.1 9.4 110 542-662 18-139 (347)
262 COG4827 Predicted transporter 20.5 9E+02 0.02 24.5 12.9 86 113-199 12-104 (239)
263 PF13829 DUF4191: Domain of un 20.5 2.5E+02 0.0055 28.8 6.2 48 130-178 18-65 (224)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.6e-145 Score=1297.10 Aligned_cols=745 Identities=32% Similarity=0.558 Sum_probs=673.4
Q ss_pred CCccccc-ccccCCCcccCcccccccccCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceec
Q 035624 8 NGSVSIT-MCINLPPEVNSAGLVMQFEDGVKEYKWLDYTTPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTF 86 (775)
Q Consensus 8 ~~~~~~~-~c~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillG 86 (775)
|-+.+.. +|+. +.+.+|+|+|+ |+||++|++|.+++|+++++++++++++++||+|||.++|||++|+++|
T Consensus 10 ~~~~~~~~~c~~-~~~~~s~g~~~-------g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLG 81 (832)
T PLN03159 10 NPSTASSVVCYA-PMMITTNGIWQ-------GDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILG 81 (832)
T ss_pred CCCCCCCccccc-CCCccCCcccc-------cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcC
Confidence 3344444 5994 43569999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccccc---ccCc-ccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035624 87 DDFFLVIKMENK---IITP-EHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPT 162 (775)
Q Consensus 87 P~~~~~lg~~~~---~~f~-~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~ 162 (775)
|++ +|+++. .+|| ++.+.++.++++|++++||++|+|+|++.+|+++|+++.+|+.++++|+++|++++++++
T Consensus 82 Ps~---lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~ 158 (832)
T PLN03159 82 PSV---LGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFH 158 (832)
T ss_pred Hhh---hCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999754 5788 677789999999999999999999999999999999999999999999999988887664
Q ss_pred CC------hhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 035624 163 GT------GPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTL 236 (775)
Q Consensus 163 ~~------~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~ 236 (775)
.. ...++++|.++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.+....+.+....++.+
T Consensus 159 ~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~ 238 (832)
T PLN03159 159 QVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVL 238 (832)
T ss_pred hcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 32 225789999999999999999999999999999999999999999999999988766544333334456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHH
Q 035624 237 GYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALV 316 (775)
Q Consensus 237 ~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~ 316 (775)
+..++|++++.+++||++.|+.||++++++.++.++.++++++++++++++.+ |+|+++|||++|+++|+. |+++.+.
T Consensus 239 l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~-Gl~~ilGAFlaGl~lp~~-~~~~~l~ 316 (832)
T PLN03159 239 LSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAI-GTHSVFGAFVFGLVIPNG-PLGVTLI 316 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHh-CccHHHHHHHHhhccCCc-chHHHHH
Confidence 77788888889999999999999999888888989989999999999999999 999999999999999984 8899999
Q ss_pred HhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhh
Q 035624 317 NKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKG 394 (775)
Q Consensus 317 ~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG 394 (775)
+|++++++++|+|+||+++|+++|+ +.+ +..| +.+++++++++++|+++++++++++|+|++|++.+|++|++||
T Consensus 317 ekle~~~~~lflPlFFv~vGl~idl~~l~~--~~~~-~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG 393 (832)
T PLN03159 317 EKLEDFVSGLLLPLFFAISGLKTNVTKIQG--PATW-GLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKG 393 (832)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeHHHhcC--chHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 554 4344 4456677788999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhcCcccccccccccccccCCCCCceeEEEEeecCCChhh
Q 035624 395 IVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRKYAGYQIKKLVDCKPESELQIVCCIYIPSNISS 474 (775)
Q Consensus 395 ~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~~~~~~~r~i~~~~~~~e~rILvcv~~~~~~~~ 474 (775)
++++++++++++.|+++++.|++++++++++|.+.+|+++++|||+|||..|++|++|+.++++|+|||+|+|+++++++
T Consensus 394 ~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~ 473 (832)
T PLN03159 394 LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPT 473 (832)
T ss_pred HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccc----cccccchHHHHHHHHccccCCcceEEEEEEEE
Q 035624 475 AINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNF----SAYSYSENVIVSFKKFGGLRWGAVSINTFTAI 550 (775)
Q Consensus 475 li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~v 550 (775)
+++|++++++++++|.++|++||+|+++|++|.+++|+.+++.. +...+++++.++|++|++++ ++|+++++|+|
T Consensus 474 li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~v 552 (832)
T PLN03159 474 IINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAI 552 (832)
T ss_pred HHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEE
Confidence 99999999999999999999999999999999999997653321 12345799999999999754 57999999999
Q ss_pred cCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCC-cccccccCCCCC
Q 035624 551 SPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNL-KRSVTHMDSSAD 629 (775)
Q Consensus 551 s~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~-~~~~~~~~~~~~ 629 (775)
||+++||+|||++|+|+++|+||+||||+|+.||.+++++..+|.+|+||+++|||||||+|||+.. ....+. .+
T Consensus 553 s~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~----~~ 628 (832)
T PLN03159 553 SPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLAS----NQ 628 (832)
T ss_pred eCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccc----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999832 111111 44
Q ss_pred ccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC--------------------CchhhhhHHHHHHH
Q 035624 630 SFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD--------------------VDWETILDSEVLRD 689 (775)
Q Consensus 630 ~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~--------------------~~~~~~~d~~~~~~ 689 (775)
..+||+++|+||+||||||+||+|||+||++++||+||++++...+ ++.|+++||++++|
T Consensus 629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINE 708 (832)
T ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999987533211 34578899999999
Q ss_pred hhcC----CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCccc
Q 035624 690 IKKT----ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCS 765 (775)
Q Consensus 690 ~~~~----~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~s 765 (775)
|+.+ +++.|.|+.|+||+|+++.+|+|.++|||++|||+|+.+||+|+||+||+||||||+|||+|||+||++++|
T Consensus 709 f~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~S 788 (832)
T PLN03159 709 FRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVS 788 (832)
T ss_pred HHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCcee
Confidence 9976 679999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEEeee
Q 035624 766 VLVVQQQR 773 (775)
Q Consensus 766 vlvvqq~~ 773 (775)
|||||||+
T Consensus 789 VLVvQQ~~ 796 (832)
T PLN03159 789 VLVVQQYV 796 (832)
T ss_pred EEEEEeec
Confidence 99999996
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-118 Score=1051.53 Aligned_cols=733 Identities=40% Similarity=0.621 Sum_probs=667.0
Q ss_pred cccCcccccccccCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhcccccc---
Q 035624 22 EVNSAGLVMQFEDGVKEYKWLDYTTPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENK--- 98 (775)
Q Consensus 22 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~--- 98 (775)
+.++.|+|+ |+||++|++|++++|+.++++++++++.++||+|||++++||++||++||+. +|++..
T Consensus 4 ~~~~~g~~~-------~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~---~g~~~~~~~ 73 (769)
T KOG1650|consen 4 KATSNGVFP-------GVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSL---LGRIPSYMN 73 (769)
T ss_pred ccccCCccc-------CCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHh---hccChhhhh
Confidence 457899999 9999999999999999999999999999999999999999999999999999 999865
Q ss_pred ccCc-ccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC-----hh------
Q 035624 99 IITP-EHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGT-----GP------ 166 (775)
Q Consensus 99 ~~f~-~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~-----~~------ 166 (775)
.+|| .+...++.++.+|+.+++|+.|+|+|.+.+|+++|++..+|+.++++|+.+|..+...+... +.
T Consensus 74 ~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (769)
T KOG1650|consen 74 TIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPF 153 (769)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccH
Confidence 7888 89999999999999999999999999999999999999999999999999988887765311 11
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHHH
Q 035624 167 SGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVAS-SSPAQALRTLGYVVFFIFI 245 (775)
Q Consensus 167 ~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~~~ 245 (775)
+..++..+++.||+|+++++|.|+|++++++||+++++++++|+.+|.++++..+..... .+.....|.+...+++.++
T Consensus 154 ~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (769)
T KOG1650|consen 154 EILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLF 233 (769)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999999999999999999888777655432 2355667888888889999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHhhccCCCCchhHHHHhhhhhhH
Q 035624 246 VMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKFYS-ELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVS 324 (775)
Q Consensus 246 ~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g-~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~ 324 (775)
+.+++||.+.|+.||+|++++.++.+...+++.++.++.+++.+ + .|+++|||+.|+++|++||+++++.+|+|++.+
T Consensus 234 ~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~-~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~ 312 (769)
T KOG1650|consen 234 LFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLI-GGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVS 312 (769)
T ss_pred eeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHh-ccccccchhheEEEecCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 7 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHh
Q 035624 325 GFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYT 402 (775)
Q Consensus 325 ~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~ 402 (775)
++|+|+||+..|+++|+ +.. | +.....+....++|++++..++.++|+|++|++.+|++|++||.+|+..++
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-----~-~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~ 386 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-----W-GALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLN 386 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999 432 4 456777778889999999999999999999999999999999999999999
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhcCcccccccccccccccCCCCCceeEEEEeecCCChhhHHHHHHhh
Q 035624 403 FASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRKYAGYQIKKLVDCKPESELQIVCCIYIPSNISSAINLLSIS 482 (775)
Q Consensus 403 ~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~~~~~~~r~i~~~~~~~e~rILvcv~~~~~~~~li~l~~~~ 482 (775)
.+++.++++++.|++++++++++|.++||+++.+|||.|+|.+|++|++|+.++++++|+|.|+|+++++++++++++++
T Consensus 387 ~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~ 466 (769)
T KOG1650|consen 387 TGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELS 466 (769)
T ss_pred HHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEeecccCCccchhhhhhhhcc-cccc-cccchHHHHHHHHccccCCcceEEEEEEEEcCCCCcHHHH
Q 035624 483 CPRNECPTVVNALHLIKLSDQATSIFVSHQKKKK-NFSA-YSYSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDI 560 (775)
Q Consensus 483 ~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I 560 (775)
.+++++|..++++|++|+.+|+.|++++|+.+++ ..+. ...++++.++|+.|++.+.++|.++++|+++|+.+||+||
T Consensus 467 ~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edi 546 (769)
T KOG1650|consen 467 SGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDI 546 (769)
T ss_pred CCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhh
Confidence 9988889999999999999999999999986655 3333 2345688999999998444679999999999999999999
Q ss_pred HHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecC
Q 035624 561 CTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLG 640 (775)
Q Consensus 561 ~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~g 640 (775)
|.+|.++++++|++|||++|+.++.+++++..+|++|++|+++|||||||++||+ ..+....++ ....++|++.|.|
T Consensus 547 c~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~--~~~~~~v~~lF~G 623 (769)
T KOG1650|consen 547 CTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQK--RGSSYKVVVLFLG 623 (769)
T ss_pred hHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceec--ccceeEEEEEecC
Confidence 9999999999999999999996668999999999999999999999999999997 222111111 2357899999999
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC----CchhhhhHHHHHHHh-hcC----CCeEEE-EEeecChhhHH
Q 035624 641 GNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD----VDWETILDSEVLRDI-KKT----ECMRYE-KHVVENGADTV 710 (775)
Q Consensus 641 g~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~----~~~~~~~d~~~~~~~-~~~----~~v~y~-e~~V~~g~~i~ 710 (775)
|+|||||+++++||++|+++++||+|+..+++..+ +++++..|++..+++ +.. ....|. |+.+++|.||.
T Consensus 624 G~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~ 703 (769)
T KOG1650|consen 624 GKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETT 703 (769)
T ss_pred ChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHH
Confidence 99999999999999999999999999998654332 367777888888887 432 356788 69999999999
Q ss_pred HHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEeeec
Q 035624 711 EIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQQRL 774 (775)
Q Consensus 711 ~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq~~~ 774 (775)
+.++++.++|||++|||.++++++.|+|++||+||||||+|||.++|+||.++.||||+|||+.
T Consensus 704 ~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 704 ALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred HHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=8.4e-47 Score=440.41 Aligned_cols=367 Identities=14% Similarity=0.176 Sum_probs=313.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcc
Q 035624 47 PRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVK 126 (775)
Q Consensus 47 ~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle 126 (775)
..+++++.+++.++.++..++||+|+|+++|||++|+++||++ +|+++ ..+.++.++++|++++||.+|+|
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~---lg~i~------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG---LRLVT------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc---ccCCC------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999999999999999 99874 46678999999999999999999
Q ss_pred cChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHH
Q 035624 127 MDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAI 206 (775)
Q Consensus 127 ~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~ 206 (775)
+|++.+|+.+|+++.+|..++++|+++++.++++++.+|..++++|.+++.||++++.++++|+|+++++.||.+++.++
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll 154 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILL 154 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhC-CC-ChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHH
Q 035624 207 VADFLSYATVLLLTVSQVA-SS-SPAQALRTLGYVVFFIFIV----MVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILL 280 (775)
Q Consensus 207 i~D~~~~i~l~~~~~~~~~-~~-~~~~~l~~~~~~i~~~~~~----~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l 280 (775)
++|+.++++++++..+... .. +....+..++..++++++. .++.+|+++|+.|+ ..+|.+...++++++
T Consensus 155 ~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~~~l~lv~ 229 (621)
T PRK03562 155 FQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTAVALFLVF 229 (621)
T ss_pred HHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHH
Confidence 9999999998877654432 11 1111222223332222232 33445555554443 245777888888889
Q ss_pred HHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHH
Q 035624 281 LFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTV 358 (775)
Q Consensus 281 ~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~ 358 (775)
+++++++.+ |+|+.+|||++|+++++. +++++++++++++ .++|+|+||+++|+++|+ +.. .| +.++.++
T Consensus 230 ~~a~la~~~-Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~----~~-~~il~~~ 301 (621)
T PRK03562 230 GFGLLMEEV-GLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE----NP-LRILILL 301 (621)
T ss_pred HHHHHHHHh-CccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH----HH-HHHHHHH
Confidence 999999999 999999999999999986 7889999999998 799999999999999999 332 22 2344555
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHh
Q 035624 359 AWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRK 435 (775)
Q Consensus 359 vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~ 435 (775)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|++.+.
T Consensus 302 ~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 302 LGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999999999999999999999999999999999999999988888888877655
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=436.79 Aligned_cols=373 Identities=17% Similarity=0.167 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccC
Q 035624 49 IMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMD 128 (775)
Q Consensus 49 ~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d 128 (775)
++..+.++++++.+++.++||+|+|+++|||++|+++||++ +|..+ ..+.++.++++|++++||.+|+|+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~---lg~~~------~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFT---PGFVA------DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccc---ccccc------chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 35677889999999999999999999999999999999999 99864 4577899999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHH
Q 035624 129 LSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVA 208 (775)
Q Consensus 129 ~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~ 208 (775)
++.+|+.++.....+..++++|+++++++++.+++++..++++|.+++.||+++++++++|+|+++++.||+++++++++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~ 157 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVE 157 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHH
Confidence 99999998888888888999999999998888998889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhh----CCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHH
Q 035624 209 DFLSYATVLLLTVSQV----ASSSPA----QALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILL 280 (775)
Q Consensus 209 D~~~~i~l~~~~~~~~----~~~~~~----~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l 280 (775)
|+.++++++++..+.. +..+.. ...+.++..+++++++.++.|++.+|+.++.++.+ .+|.+...++++++
T Consensus 158 Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l 236 (558)
T PRK10669 158 DLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALAL 236 (558)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 9999988877654322 111111 22345566677777788899999999999887553 56777777777778
Q ss_pred HHHHH-HHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHH
Q 035624 281 LFLSF-ARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILT 357 (775)
Q Consensus 281 ~~~~~-a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~ 357 (775)
++++. ++.+ |+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+ +.+ .+ .....+
T Consensus 237 ~~a~~~~~~l-Gls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~----~~-~~~~~~ 308 (558)
T PRK10669 237 GIAFGAVELF-DVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ----QP-LAVLAT 308 (558)
T ss_pred HHHHHHHHHc-CccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH----HH-HHHHHH
Confidence 77765 5889 999999999999999986 6777777777776 789999999999999998 322 22 233455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 035624 358 VAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLY 437 (775)
Q Consensus 358 ~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~ 437 (775)
+++.+++|++++++.++++|+++++++.+|++|++||+++++++..+++.|+++++.|+.+++++++|++++|++.++..
T Consensus 309 ~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~ 388 (558)
T PRK10669 309 LAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLE 388 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66688999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Cc
Q 035624 438 DP 439 (775)
Q Consensus 438 ~~ 439 (775)
|.
T Consensus 389 ~~ 390 (558)
T PRK10669 389 RY 390 (558)
T ss_pred HH
Confidence 54
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.7e-45 Score=428.87 Aligned_cols=368 Identities=15% Similarity=0.191 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhccc
Q 035624 48 RIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKM 127 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~ 127 (775)
.++.++.+++..+.++.++++|+|+|+++|||++|+++||++ +|+++ ..+.+..++++|++++||.+|+|+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~---lg~i~------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWG---LGFIS------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhcccc---ccCCC------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357788999999999999999999999999999999999999 99875 456788999999999999999999
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHH
Q 035624 128 DLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIV 207 (775)
Q Consensus 128 d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i 207 (775)
|++.+|+.+|+++.+|..++++|+++++.++++++.+|..++++|.+++.||++++.++|+|+|+++++.||++++..++
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~ 155 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLF 155 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHH
Confidence 99999999999999999999999988877777788889999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhCCCChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHH
Q 035624 208 ADFLSYATVLLLTVSQVASSSPAQAL---RTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLS 284 (775)
Q Consensus 208 ~D~~~~i~l~~~~~~~~~~~~~~~~l---~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~ 284 (775)
+|+.++++++++..+.........+. ..++..++++++..++.+|+.+|+.+. +.+|.+...++++++++++
T Consensus 156 ~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a~ 230 (601)
T PRK03659 156 QDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSAL 230 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHH
Confidence 99999988887765543222111111 111112222222234445555444332 3457788888888999999
Q ss_pred HHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHH
Q 035624 285 FARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIV 362 (775)
Q Consensus 285 ~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~ 362 (775)
+++.+ |+|+.+|||++|+++++. +++++++++++++ .++|+|+||+++|+++|+ +.. .| +.++.++++.+
T Consensus 231 l~~~~-Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~----~~-~~il~~~~~~l 302 (601)
T PRK03659 231 FMDAL-GLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT----HL-LWVLISVVVLV 302 (601)
T ss_pred HHHHh-CccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH----hH-HHHHHHHHHHH
Confidence 99999 999999999999999996 7889999999998 799999999999999999 433 33 33455566678
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 035624 363 LVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLY 437 (775)
Q Consensus 363 ~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~ 437 (775)
++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++++|++++|.+.+...
T Consensus 303 ~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~ 377 (601)
T PRK03659 303 AVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLID 377 (601)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 899999999999999999999999999999999999999999999999999999999999998877776665443
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=402.11 Aligned_cols=379 Identities=18% Similarity=0.287 Sum_probs=328.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhc
Q 035624 46 TPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGV 125 (775)
Q Consensus 46 ~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gl 125 (775)
....+.++.++++++.+++.++||+|+|+++||+++|+++||.. ++... +..+.++.++++|++++||.+|+
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~---~~~~~-----~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWG---LLLII-----ESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccc---ccccC-----CchHHHHHHHHHhHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999965 44443 47899999999999999999999
Q ss_pred ccChHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHH
Q 035624 126 KMDLSMVSKVGRK-ALYIGILSVISPLVALIPTFM-VPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQS 203 (775)
Q Consensus 126 e~d~~~lk~~~~~-~~~i~~~~~l~p~~~~~~~~~-~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls 203 (775)
|+|++.+|+++|+ +...+..++..|++++....+ .++.++..++++|.+++.||.++++++++|+|..+++.|+++++
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~ 155 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILG 155 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999999999 888888999999888865554 47888999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHH
Q 035624 204 SAIVADFLSYATVLLLTVSQVASS-SPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLF 282 (775)
Q Consensus 204 ~a~i~D~~~~i~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~ 282 (775)
+++++|+.++++++++.....++. +...++..+....+|.++..+..|++.+++.|+..+. +.+|.....++++++++
T Consensus 156 ~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~ 234 (397)
T COG0475 156 ALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGA 234 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 999999999999999888765433 2223455556666666666666788888888877543 35678888999999999
Q ss_pred HHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHH
Q 035624 283 LSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAW 360 (775)
Q Consensus 283 ~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv 360 (775)
++++|.+ |+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+++|+ +.. .| ..+..++.+
T Consensus 235 a~l~e~~-gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~----~~-~~~l~~~~~ 308 (397)
T COG0475 235 AYLAELL-GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE----NL-LLILLLVAL 308 (397)
T ss_pred HHHHHHh-ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc----cH-HHHHHHHHH
Confidence 9999999 999999999999999998444379999999997779999999999999999 444 32 336777778
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhcCcc
Q 035624 361 IVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPS 440 (775)
Q Consensus 361 ~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~ 440 (775)
.+++|.+++++.+|..|+++++++..|+.+.++|+++++.++.+.. +.++++.+...+.++++++.+.+.+.+.++++.
T Consensus 309 ~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 309 AILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999998876 578889999999999999988888888877543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.5e-39 Score=378.09 Aligned_cols=382 Identities=13% Similarity=0.113 Sum_probs=316.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHh
Q 035624 45 TTPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSG 124 (775)
Q Consensus 45 ~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~G 124 (775)
++..++++++++++++.+++.+++|+++|.+++++++|+++||++ +|.++. ++.+..+.++++|+++++|..|
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~---lg~i~~----~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDG---LGGIQF----DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccc---cCCccc----CcHHHHHHHHHHHHHHHHHcCc
Confidence 345688999999999999999999999999999999999999999 887541 3567889999999999999999
Q ss_pred cccChHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccc-cCChhHHHHH
Q 035624 125 VKMDLSMVSKVGRKALYIGILSVISPLVAL-IPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKI-LNSELGRLAQ 202 (775)
Q Consensus 125 le~d~~~lk~~~~~~~~i~~~~~l~p~~~~-~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~-~~s~~g~l~l 202 (775)
+|+|++.+|+++++++.+++.++++|++++ ..+.++++.+|..++++|++++.||++++.++++|+|+ ++++.++++.
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~ 155 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLE 155 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhh
Confidence 999999999999999999999999999874 45556678899999999999999999999999999995 7999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHH
Q 035624 203 SSAIVADFLSYATVLLLTVSQVASS--SPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILL 280 (775)
Q Consensus 203 s~a~i~D~~~~i~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l 280 (775)
+++.+||.++++++.++.....++. ..+..+..++..+++.++.+++.++.+.|+.+|.... .++.+..+++++++
T Consensus 156 ~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l 233 (562)
T PRK05326 156 IESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGAL 233 (562)
T ss_pred hhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHH
Confidence 9999999999988766655433222 1222344555566667777888899999999987421 23567778888899
Q ss_pred HHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHH
Q 035624 281 LFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTV 358 (775)
Q Consensus 281 ~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~ 358 (775)
+++++++.+ |.|+++|+|++|+++++.++..+.-.+++.+...+++.|+||+.+|+.+|+ +.+ .+...+++.+
T Consensus 234 ~~~~~a~~l-g~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~----~~~~~l~i~~ 308 (562)
T PRK05326 234 LIFALTAAL-GGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD----IALPALLLAL 308 (562)
T ss_pred HHHHHHHHH-CCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHH
Confidence 999999999 999999999999999998655444455555555789999999999999998 433 2212233334
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC-hhhHHHHHHHHHHHHHhHHHHHHhhc
Q 035624 359 AWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVP-PNMFRFMLGIIIVMGSIVPIFVRKLY 437 (775)
Q Consensus 359 vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~-~~~~~~lv~~~il~t~i~~~l~~~l~ 437 (775)
++.+++|+++++++++.++++++|+..++| .++||+++++++.++...|+.+ +..|.++.+++++|+++.++.++.+.
T Consensus 309 ~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a 387 (562)
T PRK05326 309 FLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAA 387 (562)
T ss_pred HHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHH
Confidence 566789999999999999999999999999 5899999999999999999876 56778888888899888888887776
Q ss_pred Cccc
Q 035624 438 DPSR 441 (775)
Q Consensus 438 ~~~~ 441 (775)
|+-+
T Consensus 388 ~~l~ 391 (562)
T PRK05326 388 RKLG 391 (562)
T ss_pred HHcC
Confidence 5443
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=3.1e-35 Score=312.38 Aligned_cols=270 Identities=17% Similarity=0.265 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhh
Q 035624 58 TISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGR 137 (775)
Q Consensus 58 ~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~ 137 (775)
+++.+++.++||+|+|+++++|++|+++||+. +|.++ ..+.++.++++|+.+++|.+|+|+|++.+||++|
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~---lg~i~------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~ 72 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG---LGLIS------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK 72 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCccc---ccCCC------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46778899999999999999999999999999 89874 4578999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHH
Q 035624 138 KALYIGILSVISP-LVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATV 216 (775)
Q Consensus 138 ~~~~i~~~~~l~p-~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l 216 (775)
++..++..++++| ++++..++++++.++..++++|++++.||++++.++++|+|+.+++.|+++++++++||+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l 152 (273)
T TIGR00932 73 AAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLL 152 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 777877888888889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHccchHH
Q 035624 217 LLLTVSQVAS-SSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKFYSELTV 295 (775)
Q Consensus 217 ~~~~~~~~~~-~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~ 295 (775)
.+......+. .+.....+.+...++++++.+++.++...|+.|+.++.++ +|.+...++.+++.+++++|.+ |.|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~-g~s~~ 230 (273)
T TIGR00932 153 ALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLL-GLSMA 230 (273)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHh-CCcHH
Confidence 8777654332 2222333444455555666677888889999988775433 4777888888899999999999 99999
Q ss_pred HHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhccc
Q 035624 296 AGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIH 340 (775)
Q Consensus 296 lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id 340 (775)
+|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 231 lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 231 LGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999997 45788999999997 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4e-39 Score=358.73 Aligned_cols=368 Identities=20% Similarity=0.337 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHh
Q 035624 55 TMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSK 134 (775)
Q Consensus 55 lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~ 134 (775)
++++++.+.+.++||+++|.+++|+++|+++||.+ ++..++ .....+.++++|+.+++|.+|+|+|.+.+|+
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~---~~~~~~-----~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSG---LGLLEP-----DNPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhh---hhhccc-----hhhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34555667777899999999999999999999998 786542 2478889999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHH---hhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhH
Q 035624 135 VGRKALYIGILSVISPLVA-LIPTFM---VPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADF 210 (775)
Q Consensus 135 ~~~~~~~i~~~~~l~p~~~-~~~~~~---~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~ 210 (775)
++++++.+++.++++|+++ ++.+++ ..+.++..++++|.+++.||++++.++++|.+..+++.++++.+++++||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~ 154 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDI 154 (380)
T ss_dssp ---------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhcc
Confidence 9999999999999999998 777765 356778899999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHhh-C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 035624 211 LSYATVLLLTVSQV-A-SSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARK 288 (775)
Q Consensus 211 ~~~i~l~~~~~~~~-~-~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~ 288 (775)
.+++++.+...... + ..+.......++..+...++.+++.+++..|+.|+. ++.++.....++++++.+++.+|.
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~ 231 (380)
T PF00999_consen 155 IAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEI 231 (380)
T ss_dssp TTTTTT--------------------------------------------------------------------------
T ss_pred chhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccccc
Confidence 99988876665431 1 111122222333333333344444444444444443 234567788888999999999999
Q ss_pred HccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cC-CCchhhHHHHHHHHHHHHHHHH
Q 035624 289 FYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LR-PQSFNIFIVQNILTVAWIVLVK 365 (775)
Q Consensus 289 ~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~-~~~~~~~~~~~~~~~vv~~~~K 365 (775)
+ |.++++|+|++|+++++. +.++++.++++++.++++.|+||+.+|+++|+ +. + ...| +...++.+...++|
T Consensus 232 ~-g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 232 L-GLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNS--PSVI-ILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccc--hhhh-hhHHHHHHHHHHhh
Confidence 9 999999999999999965 66777999999997799999999999999997 42 2 2343 45566666667899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhcC
Q 035624 366 FGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLYD 438 (775)
Q Consensus 366 ~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~ 438 (775)
++++++.+++.|++++|+..+|+.+++||+++++++..+.+.|.++++.+++++.++++|++++|+.++.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 307 FIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp ----------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred hceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887764
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=280.85 Aligned_cols=370 Identities=15% Similarity=0.154 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccCh
Q 035624 50 MLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDL 129 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~ 129 (775)
+-.+..-+..+++++.+..|+++|+.+||+++|++.||+. -|... +...-..++++|++++||-+|++.+.
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpft---pGFva------d~~La~~LAelGViLLmFgvGLhfsl 78 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFT---PGFVA------DQTLAPELAELGVILLMFGVGLHFSL 78 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCC---CCccc------chhHHHHHHHhhHHHHHHhcchheeH
Confidence 3344556778889999999999999999999999999988 66652 45555699999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHh
Q 035624 130 SMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVAD 209 (775)
Q Consensus 130 ~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D 209 (775)
+++.....-+.--++.++.+....|...++.+++++...+++|.++|..|..+..|.++|.++++++.||++++--+++|
T Consensus 79 kdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveD 158 (408)
T COG4651 79 KDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVED 158 (408)
T ss_pred HHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHH
Confidence 99987766666677888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----CCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHH
Q 035624 210 FLSYATVLLLTVSQV----ASSSP----AQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLL 281 (775)
Q Consensus 210 ~~~~i~l~~~~~~~~----~~~~~----~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~ 281 (775)
+..++.+.+..+.+. .+... ....+++.+...|+.++.++.|+..+|+..+.... ..+|.+...+++.+++
T Consensus 159 l~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrElf~L~vla~ALg 237 (408)
T COG4651 159 LAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRELFTLAVLAIALG 237 (408)
T ss_pred HHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence 999888877655432 11111 12345677889999999999999999999986432 2457888888999999
Q ss_pred HHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHH
Q 035624 282 FLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVA 359 (775)
Q Consensus 282 ~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~v 359 (775)
.++.+-.++|+++.+|||++|+++.+. ...++..+..-++ ++.|.-+||+++||.+|+ +.+ +. +.+.....
T Consensus 238 Va~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~---~p--l~vlatll 310 (408)
T COG4651 238 VAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ---QP--LAVLATLL 310 (408)
T ss_pred HhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc---ch--HHHHHHHH
Confidence 888776555999999999999999987 5666666555555 889999999999999999 322 13 23455555
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 035624 360 WIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKL 436 (775)
Q Consensus 360 v~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l 436 (775)
+...+|-...+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--..++...+++.++-|.+.+.+
T Consensus 311 ii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~ 387 (408)
T COG4651 311 IILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALL 387 (408)
T ss_pred HHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66689999999999999999999999999999999999999999999999997666666666666555555555544
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=9.9e-27 Score=267.68 Aligned_cols=353 Identities=10% Similarity=0.045 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhCCChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHHHHHHHHhcc
Q 035624 49 IMLLLATMFTISQVFHSVLK-RFGIPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIALFIFQSGVK 126 (775)
Q Consensus 49 ~l~~i~lil~~~~~~~~ll~-rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~~llF~~Gle 126 (775)
.++-++..+++..++..+++ |+.+|..+.++++|+++||.+ +|+++|.-+. .....++ ++++++++.+|.+|++
T Consensus 14 ~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~---l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~ 89 (810)
T TIGR00844 14 AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHC---LNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVE 89 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhh---hccCChhhcccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 44555555555555555555 999999999999999999999 8987651111 1233444 9999999999999999
Q ss_pred cChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHhhccHHHHHHHHhh---ccccCChhHHHH
Q 035624 127 MDLSMVSKVGRKALYIGILSVISPLVALIPTFMVP--TGTGPSGFFITPLYYVTSFPVIFCLLTH---LKILNSELGRLA 201 (775)
Q Consensus 127 ~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l--~~~~~~~l~ig~~ls~Ts~~vv~~iL~e---l~~~~s~~g~l~ 201 (775)
++.+.+|+.|+..+.+.+.++.+++++++++++++ +.+|..++++|+++++|++.....+++. .+ .+.++..++
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL 168 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLL 168 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHH
Confidence 99999999999999999999999999888888765 6889999999999999997766676652 23 568899999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhh--C-CCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-ccchHHHHH
Q 035624 202 QSSAIVADFLSYATVLLLTVSQV--A-SSS-P-AQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKE-VSQTGLYVV 275 (775)
Q Consensus 202 ls~a~i~D~~~~i~l~~~~~~~~--~-~~~-~-~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~-~~e~~~~~~ 275 (775)
.+++.+||.++++++.+...+.. + +.. . ...+..++..+++.++++++++++..|+.++..+.+. ..+.+..+.
T Consensus 169 ~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~ 248 (810)
T TIGR00844 169 SCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFY 248 (810)
T ss_pred hhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 99999999999887755443221 1 111 1 1112333344444444455555555555444321111 224556667
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhH-HHHhhhhhhHhhhHHHHHHHHhhcccc--cCC--CchhhH
Q 035624 276 ILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSA-LVNKFDCLVSGFFLPIFVTTSAMRIHD--LRP--QSFNIF 350 (775)
Q Consensus 276 l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~-l~~~l~~~~~~~f~PifF~~~G~~id~--l~~--~~~~~~ 350 (775)
++++++++.+++.+ |.++++++|++|+++.+.....+. -...+......++..++|+++|+.+.. +.. +++..|
T Consensus 249 LaLAli~~gla~lL-ggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w 327 (810)
T TIGR00844 249 LILALTCAGFGSML-GVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVW 327 (810)
T ss_pred HHHHHHHHHHHHHh-ccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHH
Confidence 77788888899999 999999999999999986432221 223355556778899999999999976 321 111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhhhhhHHHHHHhhhccCCC
Q 035624 351 IVQNILTVAWIVLVKFGTCSLLLLYW--KMHKNDAMALALIMNAKGIVEMAFYTFASDGRY 409 (775)
Q Consensus 351 ~~~~~~~~vv~~~~K~l~~~l~~~~~--~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~i 409 (775)
..+++.+++.++.|+.++++...+. ..+++|++++|| .++||+.++.++.++++.+.
T Consensus 328 -~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 328 -RLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 3345555566778988888765443 368999999999 99999999999999977654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=4.1e-26 Score=262.09 Aligned_cols=366 Identities=12% Similarity=0.099 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccc-cccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHH
Q 035624 54 ATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKM-ENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMV 132 (775)
Q Consensus 54 ~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~-~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 132 (775)
..+++.+.....+++|+++|.+++++++|+++||.. ++. .+ -+.+ .+..+++.+++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~---~~~~~~-----~~~~---~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAG---LLPEVP-----LDRE---IVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcc---ccCCCC-----CCHH---HHHHHHHHHHHHHHHhcCCHHHH
Confidence 345555666678999999999999999999999865 332 21 1222 23457899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHH
Q 035624 133 SKVGRKALYIGILSVISPLVALIPTFM-VPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFL 211 (775)
Q Consensus 133 k~~~~~~~~i~~~~~l~p~~~~~~~~~-~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~ 211 (775)
|++++.+..+++.++++|++++....+ +.+.++..++++|+++++|+++++.+++++.+ .++++.+++.+++++||..
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~ 151 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGA 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchH
Confidence 999999999999999999988666655 45778999999999999999999999999988 5789999999999999999
Q ss_pred HHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 035624 212 SYATVLLLTVSQVA--SSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKF 289 (775)
Q Consensus 212 ~~i~l~~~~~~~~~--~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~ 289 (775)
+++++.+......+ ..+.......++..++..+++++++.++..|+.|+..+. +.....+++++.+++++++|.+
T Consensus 152 alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~l 228 (525)
T TIGR00831 152 ALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERF 228 (525)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHh
Confidence 99998777665432 223333344444444445555666666666676554322 2345667888889999999999
Q ss_pred ccchHHHHHHHHHhhccCCCCc-h--h---HHHHhhhhhhHhhhHHHHHHHHhhcccc-cCCCchh----hH--HHH---
Q 035624 290 YSELTVAGLYIVGLAVPRGPPL-G--S---ALVNKFDCLVSGFFLPIFVTTSAMRIHD-LRPQSFN----IF--IVQ--- 353 (775)
Q Consensus 290 ~g~~~~lgaf~aGl~~~~~~~~-~--~---~l~~~l~~~~~~~f~PifF~~~G~~id~-l~~~~~~----~~--~~~--- 353 (775)
|.|+++++|++|+++++..+. . . .-.+.+......++.+++|+++|+++.. +.+. +. .+ ...
T Consensus 229 -g~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~-~~~~~~~~~~~~~~~~ 306 (525)
T TIGR00831 229 -HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSA-WKEILVAPAAVILALF 306 (525)
T ss_pred -CCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHH
Confidence 999999999999999986433 1 1 1122333445788999999999999875 2210 10 00 000
Q ss_pred --HHHHHHHHHHHHHHHHHHH--HHH-----hcCChHHHHHHHHHHhhhhhHHHHHHhhhc-c--CCC-CC-h-----hh
Q 035624 354 --NILTVAWIVLVKFGTCSLL--LLY-----WKMHKNDAMALALIMNAKGIVEMAFYTFAS-D--GRY-VP-P-----NM 414 (775)
Q Consensus 354 --~~~~~vv~~~~K~l~~~l~--~~~-----~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~-~--~~i-i~-~-----~~ 414 (775)
.+++.......|++..+.. .++ .++++|+.+.++| .+.||.++++++...- . .|. +. . -+
T Consensus 307 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~ 385 (525)
T TIGR00831 307 TNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLA 385 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHH
Confidence 1111222334555443322 111 2478999999999 8999999998775321 1 121 21 1 22
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 035624 415 FRFMLGIIIVMGSIVPIFVRKLY 437 (775)
Q Consensus 415 ~~~lv~~~il~t~i~~~l~~~l~ 437 (775)
+.++++++++.....||+.|++-
T Consensus 386 ~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 386 AGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcC
Confidence 44455555555556677777663
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.5e-23 Score=230.63 Aligned_cols=378 Identities=11% Similarity=0.092 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhccc
Q 035624 48 RIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKM 127 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~ 127 (775)
..++++.+++.++.....+.+|+..|.+...++.|++.||.+ ++..++. ....-+.+..+++..++|..|+++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~---l~~~~~~----~~~~~el~~~l~l~ilLf~~g~~l 78 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPG---LNLISPD----LELDPELFLVLFLAILLFAGGLEL 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh---hcccccc----ccCChHHHHHHHHHHHHHHhHhcC
Confidence 467888889999999999999999999999999999999988 7777651 111122233899999999999999
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHH
Q 035624 128 DLSMVSKVGRKALYIGILSVISPLVALIPTFMVP--TGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSA 205 (775)
Q Consensus 128 d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l--~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a 205 (775)
|.+.+|++++....+++.+++++.+......+++ +.++..++++|+++++|++.++.++.++.+ .+.++.+++.++|
T Consensus 79 ~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gES 157 (429)
T COG0025 79 DLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGES 157 (429)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHH
Confidence 9999999999999999999999988777777766 455669999999999999999999998877 6899999999999
Q ss_pred HHHhHHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-cccchHHHHHHHHHHHH
Q 035624 206 IVADFLSYATVLLLTVSQVAS--SSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGK-EVSQTGLYVVILILLLF 282 (775)
Q Consensus 206 ~i~D~~~~i~l~~~~~~~~~~--~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~-~~~e~~~~~~l~~~l~~ 282 (775)
++||..+++++.+......++ .+.......++..+...+.++++..++..|+.++....+ ........+.+...+..
T Consensus 158 l~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 158 LLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 999999999997776654422 222333344444444444444555555555555443211 01245677888899999
Q ss_pred HHHHHHHccchHHHHHHHHHhhccC-----CCCch-hHHHHhhhhhhHhhhHHHHHHHHhhcccc-cCCCchhhHHHHHH
Q 035624 283 LSFARKFYSELTVAGLYIVGLAVPR-----GPPLG-SALVNKFDCLVSGFFLPIFVTTSAMRIHD-LRPQSFNIFIVQNI 355 (775)
Q Consensus 283 ~~~a~~~~g~~~~lgaf~aGl~~~~-----~~~~~-~~l~~~l~~~~~~~f~PifF~~~G~~id~-l~~~~~~~~~~~~~ 355 (775)
+.++|.+ |.++++++.++|+...+ ..+.. +...+.+......++.-+.|+..|++++. ... ...| +..+
T Consensus 238 ~~~a~~l-~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~--~~~~-~~~l 313 (429)
T COG0025 238 YLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL--ALGL-LGLL 313 (429)
T ss_pred HHHHHHh-CcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HhhH-HHHH
Confidence 9999999 99999999999997741 11212 33334455556788999999999999998 222 1133 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHhhhhhHHHHHHhhhccCC------CCChhhHHHHHHHHH
Q 035624 356 LTVAWIVLVKFGTCSLLLLYWK------MHKNDAMALALIMNAKGIVEMAFYTFASDGR------YVPPNMFRFMLGIII 423 (775)
Q Consensus 356 ~~~vv~~~~K~l~~~l~~~~~~------~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~------ii~~~~~~~lv~~~i 423 (775)
++++..+++|+++++...+..+ .+++|+++++| -++||.++++++....... .+-.-++.+++++++
T Consensus 314 ~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~ 392 (429)
T COG0025 314 VALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLL 392 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHH
Confidence 7777788999999999988743 79999999998 8999999999877654221 122234555566666
Q ss_pred HHHHhHHHHHHhhcC
Q 035624 424 VMGSIVPIFVRKLYD 438 (775)
Q Consensus 424 l~t~i~~~l~~~l~~ 438 (775)
+.++..|++.+++..
T Consensus 393 v~g~t~~~l~~~~~~ 407 (429)
T COG0025 393 VQGLTLPPLAKKLEV 407 (429)
T ss_pred HHhhhHHHHHHHhcc
Confidence 666667777777654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.4e-23 Score=215.96 Aligned_cols=374 Identities=15% Similarity=0.147 Sum_probs=298.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHh
Q 035624 45 TTPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSG 124 (775)
Q Consensus 45 ~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~G 124 (775)
+...+++--.+++.++.+.+.++.|+|.|..+-.+..|++.|..+ +|.++- ++...-..++++++++++|..|
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dG---lg~I~f----dNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDG---LGGIEF----DNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCc---cccccc----CccHHHHHHHHHHHHHHhhcCc
Confidence 344455555577888889999999999999999999999999999 887652 4677778899999999999999
Q ss_pred cccChHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHH
Q 035624 125 VKMDLSMVSKVGRKALYIGILSVISPLVALI-PTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQS 203 (775)
Q Consensus 125 le~d~~~lk~~~~~~~~i~~~~~l~p~~~~~-~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls 203 (775)
+.++++.+|...++++.++.+|++++..+.. +++|.++.+|.+++++|++...|+.+.+..+|.+++ +|.+.+.++--
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEi 155 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEI 155 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEe
Confidence 9999999999999999999999999976654 455667889999999999999999999999999888 58999999999
Q ss_pred HHHHHhHHHHHHH-HHHHHHhhCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHH
Q 035624 204 SAIVADFLSYATV-LLLTVSQVASSSP-AQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLL 281 (775)
Q Consensus 204 ~a~i~D~~~~i~l-~~~~~~~~~~~~~-~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~ 281 (775)
++--||.+++.+. +++...+.+..+. +..+..++...++.++.++...++..|+++|..-+ +..|..++++..+.
T Consensus 156 ESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll 232 (574)
T COG3263 156 ESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLL 232 (574)
T ss_pred ecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHH
Confidence 9999999998775 3444444432222 33334466778888888999999999999998532 45688888999999
Q ss_pred HHHHHHHHccchHHHHHHHHHhhccCCCCc-hhHHHHhhhhhhHhhhHHHHHHHHhhcccccCCCchhhHHHHHHHHHHH
Q 035624 282 FLSFARKFYSELTVAGLYIVGLAVPRGPPL-GSALVNKFDCLVSGFFLPIFVTTSAMRIHDLRPQSFNIFIVQNILTVAW 360 (775)
Q Consensus 282 ~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~-~~~l~~~l~~~~~~~f~PifF~~~G~~id~l~~~~~~~~~~~~~~~~vv 360 (775)
.+.+++.+ |-+++++.+++|+.+.|.+-. ++.+.+..+.+ .++..-+.|...|+...+..- ++..+..+++.+..
T Consensus 233 ~fs~t~ai-GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql--~~iavPailL~l~m 308 (574)
T COG3263 233 IFSLTGAI-GGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQL--LPIAIPAILLSLWM 308 (574)
T ss_pred HHHHHHHh-cCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhh--hHhhHHHHHHHHHH
Confidence 99999999 999999999999999998533 34566666666 688888899999999998221 22223445566667
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC-hhhHHHHHHHHHHHHHhHHHHHH
Q 035624 361 IVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVP-PNMFRFMLGIIIVMGSIVPIFVR 434 (775)
Q Consensus 361 ~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~-~~~~~~lv~~~il~t~i~~~l~~ 434 (775)
.++.|++++|+...-++++++|.++++| .+-||.++++++....-.|.=+ +-.|++..+.++++..+....+.
T Consensus 309 ifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~ 382 (574)
T COG3263 309 IFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLP 382 (574)
T ss_pred HHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcch
Confidence 7889999999998888999999999999 8999999999999887777643 33455554555555444433333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=2.3e-21 Score=222.72 Aligned_cols=363 Identities=11% Similarity=0.075 Sum_probs=251.3
Q ss_pred HHHHHHHH-HHHhh-CCChhHHHHhhhceeccccchhccc--cccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHH
Q 035624 58 TISQVFHS-VLKRF-GIPIFISQIFVSILTFDDFFLVIKM--ENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVS 133 (775)
Q Consensus 58 ~~~~~~~~-ll~rl-~~P~iv~~IlaGillGP~~~~~lg~--~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk 133 (775)
.++.+... .-|+. ++|..+..++.|+++|+.. .+. .++.-| +. +.+-.+.+..++|..|.++|.+.++
T Consensus 19 ~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~---~~~~~~~~~~l--~~---~lf~~~~LPpIlFe~g~~l~~~~f~ 90 (559)
T TIGR00840 19 SLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGII---KASPHIDPPTL--DS---SYFFLYLLPPIVLDAGYFMPQRNFF 90 (559)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH---HcCCCCccCCc--CH---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33333333 43455 4999999999999999864 332 221111 12 3444567889999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh---------cCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHH
Q 035624 134 KVGRKALYIGILSVISPLVALIPTFMVP---------TGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSS 204 (775)
Q Consensus 134 ~~~~~~~~i~~~~~l~p~~~~~~~~~~l---------~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~ 204 (775)
++.+..+.+++.+++++.++.....+++ +.++..++++|+++|+|++..+..++++.+ .+.++-.++.++
T Consensus 91 ~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gE 169 (559)
T TIGR00840 91 ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGE 169 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehh
Confidence 9999999999999999987655554432 236789999999999999999999999998 588999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhh--C-CCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHH
Q 035624 205 AIVADFLSYATVLLLTVSQV--A-SSSPAQA---LRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILI 278 (775)
Q Consensus 205 a~i~D~~~~i~l~~~~~~~~--~-~~~~~~~---l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~ 278 (775)
|++||..+++++.++..... + ..+.... +..+....+..++++++.+.+..++.|+....+ .....+++++
T Consensus 170 SllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~---~~e~~l~l~~ 246 (559)
T TIGR00840 170 SLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR---QIEPLFVFLI 246 (559)
T ss_pred hhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHH
Confidence 99999999999876665432 1 1111111 111111122245566667777777777764332 3456677888
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHhhccCC-----CCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc-cCCCchhhHHH
Q 035624 279 LLLFLSFARKFYSELTVAGLYIVGLAVPRG-----PPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD-LRPQSFNIFIV 352 (775)
Q Consensus 279 ~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~-----~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~-l~~~~~~~~~~ 352 (775)
.+++++++|.+ |.+++++.+++|+++.+. .+..+.-.+.+......++..+.|+++|+.+.. ... + .| .
T Consensus 247 ~yl~Y~lAE~l-~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~--~-~~-~ 321 (559)
T TIGR00840 247 SYLSYLFAETL-HLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHE--W-NW-A 321 (559)
T ss_pred HHHHHHHHHHh-ccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--H-HH-H
Confidence 88889999999 999999999999999653 122222223344445678889999999997643 233 3 33 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhh-----HHHHHHH
Q 035624 353 QNILTVAWIVLVKFGTCSLLLLY------WKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNM-----FRFMLGI 421 (775)
Q Consensus 353 ~~~~~~vv~~~~K~l~~~l~~~~------~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~-----~~~lv~~ 421 (775)
..++.+++.++.|+++++..++. .+.+++|.+.++| .+.||.++++++...-+.+.-..+. +.+++++
T Consensus 322 ~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~T 400 (559)
T TIGR00840 322 FVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFT 400 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHH
Confidence 33444455668899888876653 3579999999998 8899999998876543333222222 3334444
Q ss_pred HHHHHHhHHHHHHhhcC
Q 035624 422 IIVMGSIVPIFVRKLYD 438 (775)
Q Consensus 422 ~il~t~i~~~l~~~l~~ 438 (775)
+++.....+|+++++.-
T Consensus 401 vlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 401 VIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HHHHHhhHHHHHHHhCC
Confidence 55555556888888753
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.82 E-value=2.6e-19 Score=193.35 Aligned_cols=272 Identities=11% Similarity=0.111 Sum_probs=174.5
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC-C
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR-W 539 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~-~ 539 (775)
|||+|+|.+++...+++.+..++ ++.+.+++++|+++-+....+........+. ......++..+.++++.+.. .
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 80 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDEREA--MRQGVISQRTAWIREQAKPYLD 80 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999998 5666889999988643221111000000000 00000011111222222111 1
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcc
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKR 619 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~ 619 (775)
.+++++..+. ..++.++.|++.|+++++||||||+||+.+..+.+ +|++.+++++++||||.++.++. +.
T Consensus 81 ~~~~~~~~v~--~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~------~gs~~~~l~~~~~~pvlvv~~~~--~~ 150 (305)
T PRK11175 81 AGIPIEIKVV--WHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVI------FTPTDWHLLRKCPCPVLMVKDQD--WP 150 (305)
T ss_pred cCCceEEEEe--cCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhc------cChhHHHHHhcCCCCEEEecccc--cC
Confidence 3566666433 23688999999999999999999999987655444 78889999999999999997643 11
Q ss_pred cccccCCCCCccceEEEEecCCcCh-------HHHHHHHHHHhhCC-CeEEEEEEeeecCCC---------CCCchhhhh
Q 035624 620 SVTHMDSSADSFSKVALLFLGGNDD-------REALTLAKRMGRDN-KVRLTVVHFIAASDD---------GDVDWETIL 682 (775)
Q Consensus 620 ~~~~~~~~~~~~~~i~~~f~gg~dd-------reAl~~a~rma~~~-~~~ltvl~~~~~~~~---------~~~~~~~~~ 682 (775)
..++|+++.+++++. ..|+++|.++|+.. ++++|++|+...... ..++..++.
T Consensus 151 ----------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 220 (305)
T PRK11175 151 ----------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAI 220 (305)
T ss_pred ----------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHH
Confidence 157999999997653 67999999999998 999999999753210 001111111
Q ss_pred H---HHHHHHhhcCCCeEEEEEeecC---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhh
Q 035624 683 D---SEVLRDIKKTECMRYEKHVVEN---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLA 756 (775)
Q Consensus 683 d---~~~~~~~~~~~~v~y~e~~V~~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~la 756 (775)
. ++.++++..+..+...+..+.. +.++.+++++ .++||++||+|+. +|+.+| -+|-..+-++
T Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~~~------~~~~~~----llGS~a~~v~ 288 (305)
T PRK11175 221 RGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEH--LDAELVILGTVGR------TGLSAA----FLGNTAEHVI 288 (305)
T ss_pred HHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHH--hCCCEEEECCCcc------CCCcce----eecchHHHHH
Confidence 1 1223333221011111111222 3447788887 8999999999974 233333 6899999999
Q ss_pred cCCCCCcccEEEEEe
Q 035624 757 SKDFGNKCSVLVVQQ 771 (775)
Q Consensus 757 s~d~~~~~svlvvqq 771 (775)
.. .+|+||||..
T Consensus 289 ~~---~~~pVLvv~~ 300 (305)
T PRK11175 289 DH---LNCDLLAIKP 300 (305)
T ss_pred hc---CCCCEEEEcC
Confidence 88 8999999963
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.76 E-value=2.2e-15 Score=164.53 Aligned_cols=303 Identities=15% Similarity=0.121 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIF 184 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~ 184 (775)
+.+--+.+|.|.+|+|+.-+.+.. +.|| ....++.|+++|.++-.. ++...+...---.+-..|+.+...
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~~~~~~GW~Ip~ATDIAFal 141 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAGGGALRGWAIPTATDIAFAL 141 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCchhhhhhhhhhhhhHHHHHH
Confidence 344445688999999996554321 2222 345678888888864433 322112211111233568888999
Q ss_pred HHHhhccc-cCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 185 CLLTHLKI-LNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 185 ~iL~el~~-~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
.+|..+|. .+++++..+++.|++||+.++++++++.. ++.+ ..+.......+ ++. |+.+|.
T Consensus 142 gvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~i~---~~~L~~a~~~~--~~l--------~~l~~~-- 203 (423)
T PRK14853 142 AVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SELN---LEALLLALVPL--ALF--------WLLVQK-- 203 (423)
T ss_pred HHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CCCC---HHHHHHHHHHH--HHH--------HHHHHc--
Confidence 99999875 48899999999999999999999987772 1122 11211111111 111 222232
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCC-----------CchhHHHHhhhhhhHhhhHHHH-
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGP-----------PLGSALVNKFDCLVSGFFLPIF- 331 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~-----------~~~~~l~~~l~~~~~~~f~Pif- 331 (775)
++++.+.++++ .+++.+..+.. |+|+.+|+|++|+++|..+ +..+++++++++++..+++|+|
T Consensus 204 --~V~~~~~Y~il--g~~lW~~~~~s-GiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFA 278 (423)
T PRK14853 204 --RVRKWWLLLPL--GVATWILVHES-GVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFA 278 (423)
T ss_pred --CCchhhHHHHH--HHHHHHHHHHh-CCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555554 33566788899 9999999999999999521 2357899999999999999999
Q ss_pred HHHHhhcccccCCCchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHH
Q 035624 332 VTTSAMRIHDLRPQSFNIFI-VQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAF 400 (775)
Q Consensus 332 F~~~G~~id~l~~~~~~~~~-~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~ 400 (775)
|+..|.++|..... ...+. .....+++..+++|++|.+..++.. +++|++-..+|++-+..-++++-+
T Consensus 279 FANaGV~l~~~~~~-~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI 357 (423)
T PRK14853 279 FFSAGVAIGGLSGL-GAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLI 357 (423)
T ss_pred HHHhhheecCchhH-HHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999762110 01110 1345666777889999988877653 478899888888777777899999
Q ss_pred Hhhhcc-CCCCChhhHHHHHHHHHHHHHhHHHHHHhhcCccc
Q 035624 401 YTFASD-GRYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSR 441 (775)
Q Consensus 401 ~~~~~~-~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~ 441 (775)
++++++ ..-..++.=..+++.++++.+++-.+.+...++.+
T Consensus 358 ~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~~~~ 399 (423)
T PRK14853 358 GELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNRKYR 399 (423)
T ss_pred HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999994 22222333334555666666666666666554433
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.8e-14 Score=146.18 Aligned_cols=340 Identities=6% Similarity=0.017 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhh
Q 035624 56 MFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKV 135 (775)
Q Consensus 56 il~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~ 135 (775)
+.+++..--.+=+|+-+..-+---+.|+++||.+ +++.+|.-+.+.+.....++.+-+..-.|.+++|+.-+.+.++
T Consensus 22 ~slF~l~S~yikekLllgEa~va~itGlI~Gphv---lnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~ 98 (467)
T KOG4505|consen 22 VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHV---LNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEH 98 (467)
T ss_pred HHHHHHHHHHHHHhHhccchHHhhhhheeechhh---hhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHH
Confidence 4444444445556676766666679999999999 9998874444344566678888888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHhhccHHHHHHHHhhccc---cCChhHHHHHHHHHHHhH
Q 035624 136 GRKALYIGILSVISPLVALIPTFMVP--TGTGPSGFFITPLYYVTSFPVIFCLLTHLKI---LNSELGRLAQSSAIVADF 210 (775)
Q Consensus 136 ~~~~~~i~~~~~l~p~~~~~~~~~~l--~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~---~~s~~g~l~ls~a~i~D~ 210 (775)
|+..+.+-.--++.-.++.+...|.+ +.+...++.++.+++.|++.....+..+.+. .+.++..++.+++-.||.
T Consensus 99 w~Si~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDG 178 (467)
T KOG4505|consen 99 WRSIFVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDG 178 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCC
Confidence 99877654443444444444455544 3456699999999999996666666665544 455788899999999999
Q ss_pred HHHHHHHHHHHHh-hCCC----Chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHH
Q 035624 211 LSYATVLLLTVSQ-VASS----SPA---QALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLF 282 (775)
Q Consensus 211 ~~~i~l~~~~~~~-~~~~----~~~---~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~ 282 (775)
.++.++-+..-+. .... ..+ ..++.-...+++..+++++.|..++...||.-- ..|++..+-+++.+.+
T Consensus 179 Maipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrli---d~eSfl~~~vvl~lfc 255 (467)
T KOG4505|consen 179 MAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLI---DRESFLIFYVVLALFC 255 (467)
T ss_pred cchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence 9998876554432 2111 111 223333334444555566666655555544322 2478888888899999
Q ss_pred HHHHHHHccchHHHHHHHHHhhccCCCCchhHH-HHhhhhhhHhhhHHHHHHHHhhcccc--cCC--CchhhHHHHHHHH
Q 035624 283 LSFARKFYSELTVAGLYIVGLAVPRGPPLGSAL-VNKFDCLVSGFFLPIFVTTSAMRIHD--LRP--QSFNIFIVQNILT 357 (775)
Q Consensus 283 ~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l-~~~l~~~~~~~f~PifF~~~G~~id~--l~~--~~~~~~~~~~~~~ 357 (775)
+.+.+.+ |++-++-.|.||.+++....+.+.. +.++..+...++.-.||++.|..++. ++. ..-..| -.+++
T Consensus 256 ~gigtii-GvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw--rlvil 332 (467)
T KOG4505|consen 256 MGIGTII-GVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW--RLVIL 332 (467)
T ss_pred hhhhhee-chhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH--HHHHH
Confidence 9999999 9999999999999999886665433 44677777778888999999999997 221 001233 23333
Q ss_pred HH-HHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhhhhhHHHHHHhhhc
Q 035624 358 VA-WIVLVKFGTCSLLLLYW--KMHKNDAMALALIMNAKGIVEMAFYTFAS 405 (775)
Q Consensus 358 ~v-v~~~~K~l~~~l~~~~~--~~~~~~~~~lg~~l~~rG~v~l~~~~~~~ 405 (775)
.+ +.+.-|+-++++.-.+- =.+|||++++|. .+|.|.-++..+.++.
T Consensus 333 si~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 333 SITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 33 33333454444432211 137999999998 9999998887777764
No 19
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.1e-13 Score=153.61 Aligned_cols=381 Identities=11% Similarity=0.101 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC---CChhHHHHhhhceeccccchh-ccccc---c-ccCcccHHHHHHHHHHHHHHHH
Q 035624 49 IMLLLATMFTISQVFHSVLKRFG---IPIFISQIFVSILTFDDFFLV-IKMEN---K-IITPEHVQLIGSMGNIGIALFI 120 (775)
Q Consensus 49 ~l~~i~lil~~~~~~~~ll~rl~---~P~iv~~IlaGillGP~~~~~-lg~~~---~-~~f~~~~~~l~~l~~igl~~ll 120 (775)
-++-+..+++++.+..+++++-| +|.-+.-++.|+++|-..... .+... . ..|. ++ .+-.+-+..++
T Consensus 36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~--~~---~ff~vLLPpii 110 (575)
T KOG1965|consen 36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS--PD---LFFLVLLPPII 110 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec--cc---HHHHHhhchhh
Confidence 34445567777888899999888 999999999999998543100 01111 0 1221 11 22234466788
Q ss_pred HHHhcccChHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHh----h--cCChhHHHHHHHHHhhccHHHHHHHHhhcccc
Q 035624 121 FQSGVKMDLSMVSKVGRKALYIGILSVISPL-VALIPTFMV----P--TGTGPSGFFITPLYYVTSFPVIFCLLTHLKIL 193 (775)
Q Consensus 121 F~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~-~~~~~~~~~----l--~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~ 193 (775)
|..|.+++.+.+.++.......++.|..+.. ++|.++.++ + .+++..++.+|+++|.|++..+..+++|++ .
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 9999999999999999999999998877664 566666655 2 245669999999999999999999999999 4
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccch
Q 035624 194 NSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPA---QALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQT 270 (775)
Q Consensus 194 ~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~---~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~ 270 (775)
...+=.++-+++++||..+++++.........+.+.+ ..+..++........++...+.+...+.|.+--++ ....
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~~~l 268 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-TPSL 268 (575)
T ss_pred CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHH
Confidence 6778889999999999999999977665543322222 23333333222222233333333333333322111 2235
Q ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCC-----CchhHHHHhhhhhhHhhhHHHHHHHHhhcccccCCC
Q 035624 271 GLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGP-----PLGSALVNKFDCLVSGFFLPIFVTTSAMRIHDLRPQ 345 (775)
Q Consensus 271 ~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~-----~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~l~~~ 345 (775)
+..+++++....+++||.+ |+++++..+..|+.+++.- +..+.-.+.+-.+...+.--+-|+++|+.+=-..++
T Consensus 269 E~al~ll~sY~sY~lAE~~-~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGC-GLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 6778888899999999999 9999999999999998752 222222333333345667778899999732212221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhhhhHHHHHHhhhc-cC-----CC
Q 035624 346 SFNIFIVQNILTVAWIVLVKFGTCSLLLLYWK----------MHKNDAMALALIMNAKGIVEMAFYTFAS-DG-----RY 409 (775)
Q Consensus 346 ~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~----------~~~~~~~~lg~~l~~rG~v~l~~~~~~~-~~-----~i 409 (775)
.+.. +..+....+..+++|..-.+-.+.+.+ +|.++-..+.|.=.-||.++++++.--. +. +.
T Consensus 348 ~~~~-~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~ 426 (575)
T KOG1965|consen 348 VYKS-LQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQT 426 (575)
T ss_pred eeec-hHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccE
Confidence 1222 123445555556777766655555543 3344445555533479999888765432 11 22
Q ss_pred CChhhHHHHHHHHHHHHHhHHHHHHhhcC
Q 035624 410 VPPNMFRFMLGIIIVMGSIVPIFVRKLYD 438 (775)
Q Consensus 410 i~~~~~~~lv~~~il~t~i~~~l~~~l~~ 438 (775)
+-..+..++++.+++-...+.|+++++..
T Consensus 427 i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 427 IFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 32333344445555555668899999864
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.50 E-value=1.7e-13 Score=128.44 Aligned_cols=131 Identities=15% Similarity=0.263 Sum_probs=99.0
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
|||+|++++++...+++.+..++ ++.+.+++++|+++.+....... .+ ......++.++.+.+..++ .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la--~~~~~~v~ll~v~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALA--RAQNGEIIPLNVIEVPNHSSPSQ--LE------VNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHh--hcCCCeEEEEEEEecCCCCCcch--hH------HHHHHHHHHHHHHHHHhhh--c
Confidence 69999999999999999999999 45678999999999765432210 00 0112234555555555443 3
Q ss_pred ceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 541 AVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 541 ~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
++.+++.+..+ +++.++||+.|+++++|+||||+|++++..+. .+|+++++|++++||||+++
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 46677765543 57999999999999999999999998775443 37888999999999999987
No 21
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.47 E-value=1.3e-11 Score=132.60 Aligned_cols=265 Identities=13% Similarity=0.140 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh-hccHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYY-VTSFPVI 183 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls-~Ts~~vv 183 (775)
+.+--+.++.|.+|+|+.-+.+.. +.|| ...-++.|++.|.++-..+.. +.+ ...--+|+-.+ -++|+.-
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~-~~~~GW~IP~ATDiAFalg 132 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDP-ITREGWAIPAATDIAFALG 132 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCC-cccCccccccHHHHHHHHH
Confidence 344445688899999998887643 3333 345667788888754333221 111 00111111111 1222222
Q ss_pred HHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 184 FCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 184 ~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
...+-..+ .+..+...+++-+++||+.+++++++...- + ....+......++. +. ++.+|..
T Consensus 133 vlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~---~---i~~~~L~~a~~~~~-~l---------~~~~~~~- 194 (373)
T TIGR00773 133 VMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYTN---D---LSMAALLVAAVAIA-VL---------AVLNRCG- 194 (373)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecCC---C---CCHHHHHHHHHHHH-HH---------HHHHHcC-
Confidence 22222222 566778899999999999999888776631 1 11222222222111 11 2233332
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCch----hHHHHhhhhhhHhhhHHHH-HHHHhhc
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLG----SALVNKFDCLVSGFFLPIF-VTTSAMR 338 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~----~~l~~~l~~~~~~~f~Pif-F~~~G~~ 338 (775)
+++...+..+. ++..+.+ ... |+|+.+|++++|+++|...+.. +++++.+++.+..+++|+| |+..|.+
T Consensus 195 ---v~~~~~y~~lg-vllW~~~-~~s-GVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~ 268 (373)
T TIGR00773 195 ---VRRLGPYMLVG-VILWFAV-LKS-GVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVS 268 (373)
T ss_pred ---CchhhHHHHHH-HHHHHHH-HHc-CCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCee
Confidence 23333433333 3333333 688 9999999999999999864333 4566666666888999999 9999999
Q ss_pred ccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhhhcc
Q 035624 339 IHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTFASD 406 (775)
Q Consensus 339 id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~ 406 (775)
+|. +.. ...+ ....+++..+++|++|++..+++. +++|++-.-+|++-+..-++++-+.+.+++
T Consensus 269 l~~~~~~~--~~~~--v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 269 LQGVSLNG--LTSM--LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred eecCcchh--hcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 986 332 2122 356777778899999999988753 468899888888777777889999999985
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.30 E-value=1e-11 Score=118.53 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred eEEEEeecCC--ChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC
Q 035624 461 QIVCCIYIPS--NISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR 538 (775)
Q Consensus 461 rILvcv~~~~--~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 538 (775)
|||+|+|.++ +...+++.+..++ +.. .+++++|+++.+... .. ...............++..+.++++.++.
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la--~~~-~~l~llhv~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLA--QDD-GVIHLLHVLPGSASL-SL--HRFAADVRRFEEHLQHEAEERLQTMVSHF 77 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHH--hcC-CeEEEEEEecCcccc-cc--cccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7999999984 8999999999887 333 489999998754321 00 00000000000001122223333333221
Q ss_pred -CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 539 -WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 539 -~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
..++++++.+. .++..++|++.|+++++||||||.||+. ..+.+ +||+.++|++++||||.|+
T Consensus 78 ~~~~~~v~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~l------lGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 78 TIDPSRIKQHVR---FGSVRDEVNELAEELGADVVVIGSRNPS-ISTHL------LGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCCcceEEEEc---CCChHHHHHHHHhhcCCCEEEEcCCCCC-cccee------cCccHHHHHHcCCCCEEEe
Confidence 13456666444 5799999999999999999999999964 44433 7889999999999999887
No 23
>PRK15005 universal stress protein F; Provisional
Probab=99.28 E-value=1.5e-11 Score=117.32 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=88.5
Q ss_pred eEEEEeecCCC--hhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC
Q 035624 461 QIVCCIYIPSN--ISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR 538 (775)
Q Consensus 461 rILvcv~~~~~--~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 538 (775)
|||+|+|.+++ ...+++.+..++ ++.+.+++++|+++............. ..........++..+.++++.++.
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASLGLAYS--AELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHh
Confidence 69999999998 468888888887 556789999999985332111000000 000000011122223333333221
Q ss_pred -CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 539 -WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 539 -~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
..+++++..+. .++..+.|++.|+++++||||||.|+ .+..+. .+|++.++|++++||||.++
T Consensus 80 ~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~------llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCC-CCchhe------eecchHHHHHHhCCCCEEEe
Confidence 13455555433 57899999999999999999999985 344443 37888999999999999886
No 24
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.21 E-value=7.7e-09 Score=113.13 Aligned_cols=295 Identities=12% Similarity=0.106 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHH
Q 035624 110 SMGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVI 183 (775)
Q Consensus 110 ~l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv 183 (775)
.+.+--+.+|.|.+|+|+.-+.+.. +.|+ ...-++.|+++|.++-. .+....+..--+|+-+ .|+.+-.
T Consensus 71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~~~~~~~GWgIPm-ATDIAFA 145 (438)
T PRK14856 71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNADTPSQHGFGIPM-ATDIAFA 145 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heecCCCccCcccccc-HHHHHHH
Confidence 3444456688999999998877643 2333 34566778888875433 2322111111111111 1222222
Q ss_pred HHHHhhcc-ccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 035624 184 FCLLTHLK-ILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTP 262 (775)
Q Consensus 184 ~~iL~el~-~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~ 262 (775)
..++.=+| ..+..+...+++-|++||+.+++++++++.- .....+.+....++.+ + ++.+|..
T Consensus 146 lgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~------~i~~~~L~~a~~~~~~-l---------~~ln~~~ 209 (438)
T PRK14856 146 LGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTT------NLKFAWLLGALGVVLV-L---------AVLNRLN 209 (438)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC------CCcHHHHHHHHHHHHH-H---------HHHHHcC
Confidence 22222222 2456788899999999999999888877631 1123333333222211 1 2223322
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCc-------------------------------
Q 035624 263 EGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPL------------------------------- 311 (775)
Q Consensus 263 ~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~------------------------------- 311 (775)
++....++++. ++..+....- |+|+.++..+.|+++|..++.
T Consensus 210 ----v~~~~~Y~~~G--~~lW~~~l~S-GVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (438)
T PRK14856 210 ----VRSLIPYLLLG--VLLWFCVHQS-GIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQEIL 282 (438)
T ss_pred ----CccccHHHHHH--HHHHHHHHHc-cCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchhhhh
Confidence 22333434333 2233344556 999999999999999975322
Q ss_pred -------------hhHHHHhhhhhhHhhhHHHH-HHHHhhcccc-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035624 312 -------------GSALVNKFDCLVSGFFLPIF-VTTSAMRIHD-LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW 376 (775)
Q Consensus 312 -------------~~~l~~~l~~~~~~~f~Pif-F~~~G~~id~-l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~ 376 (775)
.+++++.+++.+..+.+|+| |+..|..++. ... ... .....+++..++||.+|.+..+++.
T Consensus 283 ~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~--~~~--pv~lGI~~GLvvGK~lGI~~~s~la 358 (438)
T PRK14856 283 HSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINL--EVD--KVLLGVILGLCLGKPLGIFLITFIS 358 (438)
T ss_pred hhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhh--ccC--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 13456667777888999999 7788888875 211 001 1234455566689999988887653
Q ss_pred ----------cCChHHHHHHHHHHhhhhhHHHHHHhhhccC--CCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 035624 377 ----------KMHKNDAMALALIMNAKGIVEMAFYTFASDG--RYVPPNMFRFMLGIIIVMGSIVPIFVRKL 436 (775)
Q Consensus 377 ----------~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~--~ii~~~~~~~lv~~~il~t~i~~~l~~~l 436 (775)
+++|++-.-+|++-+.--++++-+++.+++. .-..++.=..+++.++++.+++..+.++.
T Consensus 359 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 359 EKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788998888887777778899999999943 32233333345555666666666555543
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.20 E-value=8.4e-11 Score=112.54 Aligned_cols=141 Identities=9% Similarity=0.079 Sum_probs=92.8
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhh-hhhhhcccccccccchHHHHHHHHccccCC
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFV-SHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
+||+|+|.+++...+++.+..++ ++...+++++|+++.+........ .........+.....++.++.+.+..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a--~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNL--ATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-- 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhc--cCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 58999999999999999999988 445689999999875432110000 0000000000011223333333322211
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhH-HHHHHHhccCC--CceEEEEc
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVR-NLNLRILEKAP--CSVGILID 613 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~-~~~~kVl~~Ap--c~Vgilvd 613 (775)
.++.++..+.. -++..+.|++.|++.++|+||||.||+.++...+ +| ++.++|++++| |||.++.|
T Consensus 77 ~~~~~~~~~~~--g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 77 KGVQCEDVVLE--DDDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred cCCeEEEEEEe--CCcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEEEeC
Confidence 34666654442 2488999999999999999999999988765443 45 58999999999 99988764
No 26
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.17 E-value=1.3e-10 Score=111.00 Aligned_cols=135 Identities=7% Similarity=0.011 Sum_probs=86.7
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
|||+|+|.+++...+++.+..++ ++.+.+++++|+.+-.....+....... . .......++..+.++++.+. .
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~--~ 77 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGLIDVNL--G-DMQKRISEETHHALTELSTN--A 77 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhhhhcch--H-HHHHHHHHHHHHHHHHHHHh--C
Confidence 79999999999999999999887 4556899999994311111100000000 0 00001112233344444332 2
Q ss_pred ceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 541 AVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 541 ~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
++.+... .+ ..++.++.|++.|+++++||||||.|+. . . ..+||+.++|+++|||||.++.-
T Consensus 78 ~~~~~~~-~~-~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~----~----~~lgSva~~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 78 GYPITET-LS-GSGDLGQVLVDAIKKYDMDLVVCGHHQD-F----W----SKLMSSARQLINTVHVDMLIVPL 139 (144)
T ss_pred CCCceEE-EE-EecCHHHHHHHHHHHhCCCEEEEeCccc-H----H----HHHHHHHHHHHhhCCCCEEEecC
Confidence 2333221 11 2478999999999999999999999963 1 1 12679999999999999999863
No 27
>PRK09982 universal stress protein UspD; Provisional
Probab=99.16 E-value=1.4e-10 Score=110.82 Aligned_cols=134 Identities=8% Similarity=-0.033 Sum_probs=86.4
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
+||+|+|.+++...+++.+..++ ++.+.+++++|+++......+....... +.. .....++..+.++++.+...
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~- 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPAT-EDI--LQLLKNKSDNKLYKLTKNIQ- 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccch-HHH--HHHHHHHHHHHHHHHHHhcC-
Confidence 69999999999999999999998 6677899999998754321110000000 000 00011112222333332211
Q ss_pred ceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEE
Q 035624 541 AVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILI 612 (775)
Q Consensus 541 ~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilv 612 (775)
...++..+. .++..+.|++.|+++++||||||.| +.+.. +.++ ++++|+++|+|||.|+.
T Consensus 79 ~~~~~~~v~---~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 79 WPKTKLRIE---RGEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLIVP 138 (142)
T ss_pred CCcceEEEE---ecCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEEec
Confidence 123443333 4799999999999999999999976 44432 2343 89999999999999884
No 28
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.09 E-value=1.8e-10 Score=107.76 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=90.7
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHH---Hcccc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFK---KFGGL 537 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~---~~~~~ 537 (775)
|||+|++++++...+++.+..++ ++...+++++|+++............. ... ...+....... .....
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAEDE--ESE----EEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeecccccccccccccc--ccc----cccchhhhhhhHHHHHHhh
Confidence 79999999999999999999988 556789999999997665332211110 000 00000000000 11111
Q ss_pred CCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEE
Q 035624 538 RWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILI 612 (775)
Q Consensus 538 ~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilv 612 (775)
. +.......+. .++..++|++.+++.++|+||||.|++.+..+.+ +|++.+++++++||||.|++
T Consensus 76 ~-~~~~~~~~~~---~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 76 E-GGIVIEVVIE---SGDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp H-TTSEEEEEEE---ESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEEE
T ss_pred h-ccceeEEEEE---eeccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEeC
Confidence 0 1223233222 3799999999999999999999999976665544 89999999999999998874
No 29
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=2.8e-08 Score=107.25 Aligned_cols=294 Identities=10% Similarity=0.043 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIF 184 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~ 184 (775)
+.+--+.+|.|.+|+|+.-+.+.. +.|+ ...-++.|++.|.++-..+.. +.+ ...--+|+-+ .|+.+-..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~-~~~~GWgIPm-ATDIAFAl 138 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNP-ETLRGWAIPA-ATDIAFAL 138 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCC-cccCcccccc-HHHHHHHH
Confidence 334445688899999998877643 2333 345677788888754333221 111 0011111111 12222222
Q ss_pred HHHhhc-cccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 185 CLLTHL-KILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 185 ~iL~el-~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
.++.=+ +..+..+...+++-+++||+.++++++++..- .....+......++. +. ++.+|..
T Consensus 139 gvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~------~i~~~~L~~a~~~~~-~l---------~~ln~~~- 201 (389)
T PRK09560 139 GVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTS------DLSLPALALAAIAIA-VL---------FLLNRLG- 201 (389)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCC------CCCHHHHHHHHHHHH-HH---------HHHHHcC-
Confidence 222212 22466678899999999999999888776631 112222222222211 11 2223322
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCc------hhHHHHhhhhhhHhhhHHHH-HHHHh
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPL------GSALVNKFDCLVSGFFLPIF-VTTSA 336 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~------~~~l~~~l~~~~~~~f~Pif-F~~~G 336 (775)
++....++.+.+ +..+....- |+|+.++..++|+++|..++. .+++++++++.+..+.+|+| |+..|
T Consensus 202 ---v~~~~~Y~~~G~--~lW~~~l~S-GvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAG 275 (389)
T PRK09560 202 ---VTKLTPYLIVGA--ILWFAVLKS-GVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAG 275 (389)
T ss_pred ---CccchHHHHHHH--HHHHHHHHc-cccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCC
Confidence 223334444332 233344455 999999999999999975322 25788889999888889999 77888
Q ss_pred hcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhhh
Q 035624 337 MRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTFA 404 (775)
Q Consensus 337 ~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~~ 404 (775)
..++- +.. ... .....+++..++||.+|.++.+++. +++|++-.-+|++-+.--++++-+++.+
T Consensus 276 V~l~~~~~~~--~~~--pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LA 351 (389)
T PRK09560 276 VSLAGISLSS--LTS--PVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLA 351 (389)
T ss_pred eeecCCcHHh--ccC--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88842 221 001 1233455556679999988887652 4688888888887777778899999999
Q ss_pred cc-CCCCChhhHHHHHHHHHHHHHhHHHHHHh
Q 035624 405 SD-GRYVPPNMFRFMLGIIIVMGSIVPIFVRK 435 (775)
Q Consensus 405 ~~-~~ii~~~~~~~lv~~~il~t~i~~~l~~~ 435 (775)
+. ..-..++.=..+++.++++.+++..+.+.
T Consensus 352 F~~~~~~~~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 352 FGASEELLTEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 84 21122233333444455555555544443
No 30
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.08 E-value=3.8e-10 Score=104.79 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=88.9
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
|||+|+++++....+++.+..++ ++.+..++++|+++-... .. . ...++.++.+.+..++ .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~~--~~--~-----------~~~~~~l~~~~~~~~~--~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLA--DRLKAPWYVVYVETPRLN--RL--S-----------EAERRRLAEALRLAEE--L 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHH--HHhCCCEEEEEEecCccc--cC--C-----------HHHHHHHHHHHHHHHH--c
Confidence 69999999999999999999998 456789999999873221 10 0 0112333344433332 1
Q ss_pred ceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccC-CCceEEE
Q 035624 541 AVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKA-PCSVGIL 611 (775)
Q Consensus 541 ~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~A-pc~Vgil 611 (775)
++..+ +.. .++..+.|++.++++++|+|+||+|+++.+...+ +|+..++|+++| ||||.|+
T Consensus 62 ~~~~~--~~~--~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAEVV--TLP--GDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCEEE--EEe--CCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence 23322 222 3678999999999999999999999987765443 888999999999 9999875
No 31
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.04 E-value=4.8e-08 Score=105.22 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIF 184 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~ 184 (775)
+.+--+.+|.|.+|+|+.-+.+.. +.|+ ...-++.|++.|.++-..+.. +.+. ..--+|+- ..|+.+-..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~-~~~GWaIP-~ATDIAFal 138 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPV-TREGWAIP-AATDIAFAL 138 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-ccCccccc-cHHHHHHHH
Confidence 334445688899999998887643 2333 345667788888754333221 1110 00111111 112222222
Q ss_pred HHHhhc-cccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 185 CLLTHL-KILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 185 ~iL~el-~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
.++.=+ +..+..+...+++-+++||+.++++++++..- + ..+.+......++.+ . ++.+|..
T Consensus 139 gvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~-i~~~~L~~a~~~~~~--l--------~~ln~~~- 201 (388)
T PRK09561 139 GVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTS-----D-LSMVSLGVAAVAIAV--L--------AVLNLCG- 201 (388)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC-----C-ccHHHHHHHHHHHHH--H--------HHHHHcC-
Confidence 222222 22466678899999999999999888776631 1 112222222221111 1 2223322
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCc----hhHHHHhhhhhhHhhhHHHH-HHHHhhc
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPL----GSALVNKFDCLVSGFFLPIF-VTTSAMR 338 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~----~~~l~~~l~~~~~~~f~Pif-F~~~G~~ 338 (775)
++....++++.+ +..+....- |+|+.++..+.|+++|...+. .+++++++++.+..+.+|+| |+..|..
T Consensus 202 ---v~~~~~Y~~~G~--~lW~~~l~S-GvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~ 275 (388)
T PRK09561 202 ---VRRTSVYILVGV--VLWVAVLKS-GVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVS 275 (388)
T ss_pred ---CccchHHHHHHH--HHHHHHHHc-cccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCee
Confidence 223334444332 233344556 999999999999999974321 36788899999888899999 7778888
Q ss_pred c-cc-c---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhh
Q 035624 339 I-HD-L---RPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTF 403 (775)
Q Consensus 339 i-d~-l---~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~ 403 (775)
+ +. + .+ + ....+++..++||.+|.+..+++. +++|++-.-+|.+-+..-++++-+++.
T Consensus 276 l~~~~~~~~~~--p-----v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L 348 (388)
T PRK09561 276 LQGVTLDGLTS--P-----LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASL 348 (388)
T ss_pred eccCcHHhhcC--c-----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 32 2 22 2 133455556679999988887652 468888888888777777889999999
Q ss_pred hccC--CCCChhhHHHHHHHHHHHHHhHHHHHH
Q 035624 404 ASDG--RYVPPNMFRFMLGIIIVMGSIVPIFVR 434 (775)
Q Consensus 404 ~~~~--~ii~~~~~~~lv~~~il~t~i~~~l~~ 434 (775)
+++. ....++.=..+++.++++.+++..+.+
T Consensus 349 AF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~ 381 (388)
T PRK09561 349 AFGGVDPELINYAKLGILIGSLLSAVIGYSWLR 381 (388)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9852 111122222333444454544444444
No 32
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=5.5e-08 Score=106.10 Aligned_cols=289 Identities=14% Similarity=0.088 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIF 184 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~ 184 (775)
+.+--+.+|.|.+|+|+.-+.+.. +.|+ ...-++.|+++|.++-. .+....+..--+|+- ..|+.+-..
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n~~~~~~~GWgIP-mATDIAFAl 141 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALNAGGPGASGWGVP-MATDIAFAL 141 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCccCccccc-cHHHHHHHH
Confidence 333445588899999998887643 2333 34566777888875433 232211111111111 123322222
Q ss_pred HHHhhcc-ccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 185 CLLTHLK-ILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 185 ~iL~el~-~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
.++.=+| ..+..+...+++-|++||+.++++++++..- + ....+..+..+++. ++ ++.+|..
T Consensus 142 gvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~-i~~~~L~~a~~~~~-~l---------~~ln~~~- 204 (423)
T PRK14855 142 GVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTS-----G-LNLLALLLAALTWA-LA---------LLAGRLG- 204 (423)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCC-----C-CCHHHHHHHHHHHH-HH---------HHHHHcC-
Confidence 2332222 2455678899999999999999888776631 1 12222222222111 11 2223322
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCC-c-------------------------------
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPP-L------------------------------- 311 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~-~------------------------------- 311 (775)
++....++.+.+ +..+....- |+|+.++..+.|+++|..++ .
T Consensus 205 ---v~~~~~Y~~~G~--~lW~~~l~S-GVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (423)
T PRK14855 205 ---VTSLKIYAVLGA--LLWFFVLKS-GLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLE 278 (423)
T ss_pred ---CccccHHHHHHH--HHHHHHHHh-cccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhhcc
Confidence 233334444332 233344556 99999999999999997511 1
Q ss_pred -----hhHHHHhhhhhhHhhhHHHH-HHHHhhcccc-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 035624 312 -----GSALVNKFDCLVSGFFLPIF-VTTSAMRIHD-LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW-------- 376 (775)
Q Consensus 312 -----~~~l~~~l~~~~~~~f~Pif-F~~~G~~id~-l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~-------- 376 (775)
.+++++.+++.+..+.+|+| |+..|..++- ... +- ...+++..++||.+|.++.+++.
T Consensus 279 ~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~--pv-----~lGI~~GLvvGK~lGI~~~s~lavkl~~a~l 351 (423)
T PRK14855 279 RAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG--TV-----SLGVFLGLLLGKPLGVVGGAWLAVRLGLASL 351 (423)
T ss_pred ccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC--cH-----HHHHHHHHHhcchHHHHHHHHHHHHhCCCCC
Confidence 24567777788878899999 7778887744 211 21 33444556679999998887653
Q ss_pred --cCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 035624 377 --KMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVR 434 (775)
Q Consensus 377 --~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~ 434 (775)
+++|++-.-+|++-+.--++++-+++.+++..-..++.=..+++.++++.+++..+.+
T Consensus 352 P~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 352 PRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788998888887777778999999999953322233333344455555555554444
No 33
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.00 E-value=1.2e-07 Score=101.83 Aligned_cols=290 Identities=12% Similarity=0.088 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh-hccHHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYY-VTSFPVI 183 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls-~Ts~~vv 183 (775)
+.+--+.+|.|.+|+|+.-+.+.. +.|| ...-++.|+++|.++-..+.+ .....--+|+-.+ -++|++-
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~----~~~~~~GW~IP~ATDIAFAlg 135 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH----DIKVINGWAIPSATDIAFTLG 135 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc----CCcccCccccccHHHHHHHHH
Confidence 334445688899999998877542 3333 345677788888765443322 1100111111111 1222222
Q ss_pred HHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 035624 184 FCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPE 263 (775)
Q Consensus 184 ~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~ 263 (775)
...+-..+ .+..+.-.+++-+++||+.++++++++..- + ....+......++. + .++ +.|+..
T Consensus 136 vLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt~-----~-i~~~~L~~A~~~~~-~-l~~-------~nr~~~- 198 (383)
T PRK14854 136 ILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYTK-----S-LSLLSLSLGTLFIL-A-MII-------CNRIFK- 198 (383)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecCC-----C-ccHHHHHHHHHHHH-H-HHH-------HHHhcC-
Confidence 22222222 466777888999999999999888776631 1 11222222111111 1 111 122111
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCc----hhHHHHhhhhhhHhhhHHHH-HHHHhhc
Q 035624 264 GKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPL----GSALVNKFDCLVSGFFLPIF-VTTSAMR 338 (775)
Q Consensus 264 ~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~----~~~l~~~l~~~~~~~f~Pif-F~~~G~~ 338 (775)
++....++++. ++..+....- |+|+.++..+.|+++|...+. .+++++++++.+..+.+|+| |+..|..
T Consensus 199 ---v~~~~~Y~~~G--~~lW~~~l~S-GvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~ 272 (383)
T PRK14854 199 ---INRSSVYVVLG--FFAWFCTIKS-GVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGIS 272 (383)
T ss_pred ---CceehHHHHHH--HHHHHHHHHh-cccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCee
Confidence 22333443332 2333444566 999999999999999974221 25788888899999999999 7788888
Q ss_pred cc-c----cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhh
Q 035624 339 IH-D----LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTF 403 (775)
Q Consensus 339 id-~----l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~ 403 (775)
++ . +.+ + ....+++..++||.+|.+..+++. +++|++-.-+|++-+..-++++-+++.
T Consensus 273 l~~~~~~~~~~--p-----v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L 345 (383)
T PRK14854 273 FSGISFSILFE--P-----ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVL 345 (383)
T ss_pred eccCcHHhhcC--c-----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 83 2 222 2 133455556679999988887652 468899888888777777899999999
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 035624 404 ASDGRYVPPNMFRFMLGIIIVMGSIVPIFVR 434 (775)
Q Consensus 404 ~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~ 434 (775)
+++..-..++.=-.+++.++++.+++-.+.+
T Consensus 346 AF~~~~~~~~aKigIL~gS~~aai~G~~~l~ 376 (383)
T PRK14854 346 AFNDTHLLNAIKIGVVVGSVLSGFFGYIVLR 376 (383)
T ss_pred hCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9953212223333334444555555444443
No 34
>PRK10116 universal stress protein UspC; Provisional
Probab=98.98 E-value=2.6e-09 Score=101.66 Aligned_cols=136 Identities=10% Similarity=0.051 Sum_probs=89.7
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||++++.+++...+++.+..++ ++.+.+++++|+++.+...... .....+. ......++..+.++++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA--RPVNGKISLITLASDPEMYNQF--AAPMLED--LRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH--HHhCCEEEEEEEccCcccchhh--hHHHHHH--HHHHHHHHHHHHHHHHHHh--
Confidence 379999999999999999999998 5556799999998754211111 0000000 0001112223344444332
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
.+++.... .+ ..++..+.|++.|+++++||||||.|+..+.+. +.++.++|++++||||.++..
T Consensus 76 ~~~~~~~~-~~-~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 76 ADYPIEKT-FI-AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred cCCCeEEE-EE-ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeC
Confidence 23333221 12 368999999999999999999999998765432 236789999999999999864
No 35
>PRK11175 universal stress protein UspE; Provisional
Probab=98.89 E-value=4.1e-09 Score=113.89 Aligned_cols=142 Identities=12% Similarity=0.095 Sum_probs=90.5
Q ss_pred eeEEEEeecCCCh-------hhHHHHHHhhCCCCCC-CcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHH
Q 035624 460 LQIVCCIYIPSNI-------SSAINLLSISCPRNEC-PTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSF 531 (775)
Q Consensus 460 ~rILvcv~~~~~~-------~~li~l~~~~~~~~~~-~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 531 (775)
-+||+|++.++.. ..+++.+..++ +.. ..+++++|+.+.+........... ..........++..+.+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la--~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 228 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLA--EQLNHAEVHLVNAYPVTPINIAIELPEF--DPSVYNDAIRGQHLLAM 228 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHH--hhCcCCceEEEEEecCcchhcccccccc--chhhHHHHHHHHHHHHH
Confidence 5899999987654 46888888877 334 578999999875432110000000 00000000111223334
Q ss_pred HHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 532 KKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 532 ~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
+++.++. +++.... .+. .++..+.|++.|+++++|+||||+|+++++.+.+ +|++.++|++++||||.++
T Consensus 229 ~~~~~~~--~~~~~~~-~v~-~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~~pVLvv 298 (305)
T PRK11175 229 KALRQKF--GIDEEQT-HVE-EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLNCDLLAI 298 (305)
T ss_pred HHHHHHh--CCChhhe-eec-cCCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCCCCEEEE
Confidence 4443322 2222111 121 4788999999999999999999999998876655 8889999999999999999
Q ss_pred EcCC
Q 035624 612 IDHG 615 (775)
Q Consensus 612 vdr~ 615 (775)
+.++
T Consensus 299 ~~~~ 302 (305)
T PRK11175 299 KPDG 302 (305)
T ss_pred cCCC
Confidence 7655
No 36
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.84 E-value=3.9e-08 Score=105.98 Aligned_cols=268 Identities=15% Similarity=0.169 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHhhccHHH
Q 035624 110 SMGNIGIALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGP-SGFFITPLYYVTSFPV 182 (775)
Q Consensus 110 ~l~~igl~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~-~~l~ig~~ls~Ts~~v 182 (775)
.+.+--+.+|.|.+|+|+.-+.+.. +.|| ...-++.|++.|.++ +..++...+ ..--+|+- ..|+.+-
T Consensus 58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~~~~~~~GW~IP-~ATDIAF 132 (378)
T PF06965_consen 58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAGGPEAAHGWAIP-MATDIAF 132 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--SSTTHHHHTSSS-S---HHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecCCCCcCceEEec-ccccHHH
Confidence 3444445688999999998877642 2333 344566677777643 333332211 11111111 2244444
Q ss_pred HHHHHhhcc-ccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 035624 183 IFCLLTHLK-ILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMT 261 (775)
Q Consensus 183 v~~iL~el~-~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~ 261 (775)
...++.=.| ..+..+...+++-+++||+.++++++++..- .....+......+ +++. +..+|.
T Consensus 133 Algvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~------~i~~~~L~~a~~~-~~~l---------~~l~r~ 196 (378)
T PF06965_consen 133 ALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD------GISLLWLLLAAAA-LLLL---------FVLNRL 196 (378)
T ss_dssp HHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHH-HHHH---------HHHHHT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC------CCCHHHHHHHHHH-HHHH---------HHHHHC
Confidence 444443333 2456678899999999999999998877642 1112222222221 1111 222333
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCch--------hHHHHhhhhhhHhhhHHHH-H
Q 035624 262 PEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLG--------SALVNKFDCLVSGFFLPIF-V 332 (775)
Q Consensus 262 ~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~--------~~l~~~l~~~~~~~f~Pif-F 332 (775)
. ++....+..+. +...+....- |+|+.++..+.|+++|..++.. +++++++++.+..+.+|+| |
T Consensus 197 ~----v~~~~~Y~~~G--~~lW~~~l~S-GvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAl 269 (378)
T PF06965_consen 197 G----VRSLWPYLLLG--ILLWYAVLKS-GVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFAL 269 (378)
T ss_dssp T-------THHHHHHH--HHHHHHTTTS-HHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred C----CceehHHHHHH--HHHHHHHHHc-CCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhh
Confidence 2 22333433332 2233334455 9999999999999999875442 4788888888888889999 7
Q ss_pred HHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHH
Q 035624 333 TTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAF 400 (775)
Q Consensus 333 ~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~ 400 (775)
+..|..++- +.. ... .....+++..++||.+|.+..++.. +++|++-..+|++-+.--++++-+
T Consensus 270 aNAGV~l~~~~~~~--~~~--pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFI 345 (378)
T PF06965_consen 270 ANAGVSLSGSSLGD--LTS--PVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFI 345 (378)
T ss_dssp HHS----SSS---T--HHH--HSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHH
T ss_pred eeCceEEecCchHh--hhC--hHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788888886 332 111 1233444556679999988876642 467788788888667777899999
Q ss_pred HhhhccCCC
Q 035624 401 YTFASDGRY 409 (775)
Q Consensus 401 ~~~~~~~~i 409 (775)
++.+++..-
T Consensus 346 a~LAF~~~~ 354 (378)
T PF06965_consen 346 AGLAFDDPA 354 (378)
T ss_dssp HHHHSTT-S
T ss_pred HHHHcCChh
Confidence 999998733
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.77 E-value=2.5e-08 Score=92.04 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=89.4
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
+||+|+++++....+++.+..++ ++.+..++++|+.+-........... .....++.++.+...... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a--~~~~~~i~~l~v~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~--~ 68 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA--RRLGAELVLLHVVDPPPSSAAELAEL--------LEEEARALLEALREALAE--A 68 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCCCCcchhHHHH--------HHHHHHHHHHHHHHHHhc--C
Confidence 58999999999999999999998 45578999999987544322100000 001123333333332211 3
Q ss_pred ceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 541 AVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 541 ~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
+++++..... .+..++|++.+++.++|++|||++++....+. .+++..++++++++|||.++
T Consensus 69 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 69 GVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred CCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEeC
Confidence 4666654442 44589999999999999999999887554333 36778999999999998763
No 38
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.73 E-value=1.1e-07 Score=90.92 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=85.6
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC------------chhhhhHHHHHHHhhcC---CCeE
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDV------------DWETILDSEVLRDIKKT---ECMR 697 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~---~~v~ 697 (775)
+|+++++|.+..+.|+++|.++++..+++++++|+.++...... ++.++..++.++++... ..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ 80 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 48899999999999999999999999999999999875322111 01112233344444321 2333
Q ss_pred EEEEeecC---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccc-cchhhhhcCCCCCc--ccEEEEEe
Q 035624 698 YEKHVVEN---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELG-VLGDLLASKDFGNK--CSVLVVQQ 771 (775)
Q Consensus 698 y~e~~V~~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~~--~svlvvqq 771 (775)
+....++. .++|++++++ .++|||+||+|+. .|+.++ -+| .+.+.+..+ ++ |+|||||.
T Consensus 81 ~~~~~~~g~~~~~~I~~~a~~--~~~dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 81 CEDVVLEDDDVAKAIVEYVAD--HGITKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred EEEEEEeCCcHHHHHHHHHHH--cCCCEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEEEeC
Confidence 43344332 4468888887 7899999999974 233322 456 699999888 77 99999984
No 39
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.8e-06 Score=88.03 Aligned_cols=288 Identities=13% Similarity=0.116 Sum_probs=164.7
Q ss_pred HHHHHHHhcccChHHHHh---hhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH-HHhhccHHHHHHHHhh
Q 035624 117 ALFIFQSGVKMDLSMVSK---VGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITP-LYYVTSFPVIFCLLTH 189 (775)
Q Consensus 117 ~~llF~~Gle~d~~~lk~---~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~-~ls~Ts~~vv~~iL~e 189 (775)
.++.+.+|+|+.-+.+.. ++++ ....++.|++.|.+ ++.++....+.. .=|- +=+.|+.+-...+++=
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl----iy~~~n~~~p~~-~~GWaIP~ATDiAFAlGvlaL 146 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL----IYLALNAGDPAT-LEGWAIPMATDIAFALGVLAL 146 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh----HhheeecCChhh-hcCcCcccHHHHHHHHHHHHH
Confidence 466788999998887753 3343 33455666777764 333333222210 0011 1122333333333333
Q ss_pred c-cccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q 035624 190 L-KILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVS 268 (775)
Q Consensus 190 l-~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~ 268 (775)
+ +..++.+.-..++-+++||+-++++.++.... +.+ ..+.....++. .+... .+|.. ++
T Consensus 147 LG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~---~Ls---~~al~~a~~~i-~vL~~---------lN~~~----v~ 206 (390)
T COG3004 147 LGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTT---DLS---MAALGIAALAI-AVLAV---------LNRLG----VR 206 (390)
T ss_pred hcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcC---Ccc---HHHHHHHHHHH-HHHHH---------HHHhC----ch
Confidence 3 23567788899999999999999888777632 111 21111111111 11111 12221 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCc----hhHHHHhhhhhhHhhhHHHH-HHHHhhcccc--
Q 035624 269 QTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPL----GSALVNKFDCLVSGFFLPIF-VTTSAMRIHD-- 341 (775)
Q Consensus 269 e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~----~~~l~~~l~~~~~~~f~Pif-F~~~G~~id~-- 341 (775)
....+++...++= .....- |+|..++..+.|+.+|-.... -+++++.+.+.+..+.+|+| |...|.+++-
T Consensus 207 ~l~~Y~~~gviLW--~~vlkS-GVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~ 283 (390)
T COG3004 207 RLSPYLLVGVILW--IAVLKS-GVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVS 283 (390)
T ss_pred hhhHHHHHHHHHH--HHHHHh-hhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccccc
Confidence 2223333333321 223455 999999999999999965322 25677778888888899999 7788888773
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhhhccCC-CC
Q 035624 342 LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTFASDGR-YV 410 (775)
Q Consensus 342 l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~-ii 410 (775)
+.. ... .....+++..+++|.+|.+..++.. +.+|++-..++.+.+..-++++-+..++++.. ..
T Consensus 284 ~~~--l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~~~~ 359 (390)
T COG3004 284 LSG--LTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDEL 359 (390)
T ss_pred ccc--ccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCChHHH
Confidence 222 111 1244555667789999988887752 56788888888877777788888899888653 22
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHhh
Q 035624 411 PPNMFRFMLGIIIVMGSIVPIFVRKL 436 (775)
Q Consensus 411 ~~~~~~~lv~~~il~t~i~~~l~~~l 436 (775)
....--.+...+.++.+++-...+..
T Consensus 360 ~~~~klgIL~gS~~Sai~G~~~L~~~ 385 (390)
T COG3004 360 QTAAKLGILVGSFISAILGYSYLRLL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222233444445444444444444
No 40
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.3e-08 Score=113.03 Aligned_cols=359 Identities=11% Similarity=0.106 Sum_probs=218.2
Q ss_pred HHHHHHHHhhC--CChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhh
Q 035624 61 QVFHSVLKRFG--IPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGR 137 (775)
Q Consensus 61 ~~~~~ll~rl~--~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~ 137 (775)
.+.--+..+++ +|.-.-.|+.|+++|-.. .+.-....+. ++.. +--.-+-.++|.+|.-|.-+.+-.|..
T Consensus 55 Ki~fh~~~~l~~i~PES~lLI~~Gl~lG~ii---~~~~~~~~~~L~s~v----FFlyLLPPIvlDAGYfMp~r~Ff~Nlg 127 (670)
T KOG1966|consen 55 KIVFHLMPKLRKIVPESCLLIILGLVLGGII---KALATIAPFFLESDV----FFLYLLPPIVLDAGYFMPNRAFFENLG 127 (670)
T ss_pred HhcccccccccccCchhHHHHHHHHHHHHHH---Hhhhccccccccccc----hhhhhcCHHHhcccccCccHHHHhccc
Confidence 33333344444 688888888888888654 2221110011 1111 111224457899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH------hhcCC--hhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHh
Q 035624 138 KALYIGILSVISPLVALIPTFM------VPTGT--GPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVAD 209 (775)
Q Consensus 138 ~~~~i~~~~~l~p~~~~~~~~~------~l~~~--~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D 209 (775)
..+..+++|.+...+...+..| .++.. ....++.|..+|..+|..+..+.+|.+. |.-+=-++-+++++||
T Consensus 128 tILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlND 206 (670)
T KOG1966|consen 128 TILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLND 206 (670)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcC
Confidence 9999999998876543222211 23322 3477889999999999889999999984 6666667889999999
Q ss_pred HHHHHHHHHHHHHh-hCCCC--hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHH
Q 035624 210 FLSYATVLLLTVSQ-VASSS--PA---QALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFL 283 (775)
Q Consensus 210 ~~~~i~l~~~~~~~-~~~~~--~~---~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~ 283 (775)
...+++.-+..... -++.+ .. .....+....+.+++++.+...+.....|.+.. ++-...++++.+...++
T Consensus 207 aVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYlaY 283 (670)
T KOG1966|consen 207 AVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYLAY 283 (670)
T ss_pred ceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHHHH
Confidence 99998875554432 11110 00 001111111122233344444444444444432 33455778888999999
Q ss_pred HHHHHHccchHHHHHHHHHhhccCCC--CchhHH---HHhhhhhhHhhhHHHHHHHHhhcccc-cCCCchhhHHHHHHHH
Q 035624 284 SFARKFYSELTVAGLYIVGLAVPRGP--PLGSAL---VNKFDCLVSGFFLPIFVTTSAMRIHD-LRPQSFNIFIVQNILT 357 (775)
Q Consensus 284 ~~a~~~~g~~~~lgaf~aGl~~~~~~--~~~~~l---~~~l~~~~~~~f~PifF~~~G~~id~-l~~~~~~~~~~~~~~~ 357 (775)
..+|.. +++++++-.+.|+++...- ...++. ++.+-...+..--++.|++.|..+-- ... | .| +.+.+-
T Consensus 284 L~aEm~-hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~--w-d~-~Fi~~T 358 (670)
T KOG1966|consen 284 LTAEMF-HLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHH--W-DF-AFICLT 358 (670)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcce--e-eh-hhhhhH
Confidence 999999 9999999999999997641 111221 22222334556677888888987654 333 4 32 334444
Q ss_pred HHHHHHHHHHHHHHHHHHh------cCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC------hhhHHHHHHHHHHH
Q 035624 358 VAWIVLVKFGTCSLLLLYW------KMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVP------PNMFRFMLGIIIVM 425 (775)
Q Consensus 358 ~vv~~~~K~l~~~l~~~~~------~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~------~~~~~~lv~~~il~ 425 (775)
++...+-|++++.+.+++. +++..|.+.++. =+-||.++..+... .+...++ ..+..++.+++.+.
T Consensus 359 ~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~l-id~~~vp~K~~Fvttti~VIfFTVflQ 436 (670)
T KOG1966|consen 359 LVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVL-IDGAKVPAKNMFVTTTIAVIFFTVFLQ 436 (670)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEE-eccccCCcccceEeeeeEEEeeeeeec
Confidence 5555667999887777654 456677765543 35677665544222 2322222 23444555666666
Q ss_pred HHhHHHHHHhhc
Q 035624 426 GSIVPIFVRKLY 437 (775)
Q Consensus 426 t~i~~~l~~~l~ 437 (775)
.+..-|+++++.
T Consensus 437 GiTIkplvk~L~ 448 (670)
T KOG1966|consen 437 GITIKPLVKFLK 448 (670)
T ss_pred ccchHHHHHHHc
Confidence 667789999985
No 41
>PRK09982 universal stress protein UspD; Provisional
Probab=98.57 E-value=1.8e-07 Score=89.21 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=79.1
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCC-------CCCch----hhhhHHHHHHHhhcC-CCeEE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDD-------GDVDW----ETILDSEVLRDIKKT-ECMRY 698 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~-------~~~~~----~~~~d~~~~~~~~~~-~~v~y 698 (775)
.++|+++.+|+++.+.|++.|.++|+.+++++|++|++++... ...+. .++..++.+++.... ....
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPK- 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 5789999999999999999999999999999999999864211 00001 111122234444322 1111
Q ss_pred EEEeecC---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 699 EKHVVEN---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 699 ~e~~V~~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
.+..++. +++|.+++++ .++|||+||+|+ +|+++|- | +.+-+... ++++||||.
T Consensus 82 ~~~~v~~G~p~~~I~~~A~~--~~aDLIVmG~~~-------~~~~~~~-----~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 82 TKLRIERGEMPETLLEIMQK--EQCDLLVCGHHH-------SFINRLM-----P-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred ceEEEEecCHHHHHHHHHHH--cCCCEEEEeCCh-------hHHHHHH-----H-HHHHHHhc---CCCCEEEec
Confidence 1222222 4678888888 889999999763 2444442 4 55555555 889999984
No 42
>PRK15005 universal stress protein F; Provisional
Probab=98.56 E-value=5.3e-07 Score=85.87 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=80.5
Q ss_pred cceEEEEecCCcC--hHHHHHHHHHHhhCCCeEEEEEEeeecCCCC---------CC---chhhhhHHHHHHHhhcC---
Q 035624 631 FSKVALLFLGGND--DREALTLAKRMGRDNKVRLTVVHFIAASDDG---------DV---DWETILDSEVLRDIKKT--- 693 (775)
Q Consensus 631 ~~~i~~~f~gg~d--dreAl~~a~rma~~~~~~ltvl~~~~~~~~~---------~~---~~~~~~d~~~~~~~~~~--- 693 (775)
.++|+++.+|.++ .+.|+++|.++|+..+++++++|++++.... +. +..++..++-++++..+
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999987 4799999999999999999999998642110 00 00111111223332221
Q ss_pred CCeEEEEEeecC--hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 694 ECMRYEKHVVEN--GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 694 ~~v~y~e~~V~~--g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
....+.....+. .+++.+.+++ .++|||++|+|++ |+.+| -+|...+-+..+ ++|+||||.
T Consensus 82 ~~~~~~~~v~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 82 PTDRVHVHVEEGSPKDRILELAKK--IPADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCCceEEEEeCCCHHHHHHHHHHH--cCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 122222222221 3446666666 7899999998841 34333 579999999999 999999984
No 43
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.54 E-value=2.5e-07 Score=85.79 Aligned_cols=120 Identities=20% Similarity=0.184 Sum_probs=82.1
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCC--eEEEEEeecChhhHH
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTEC--MRYEKHVVENGADTV 710 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--v~y~e~~V~~g~~i~ 710 (775)
||++++.|++..++|+++|.++|+..+++++++|+.+++.....+..++..+++.+..+..+. ....+..+ ++.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~I~ 78 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV--AEAIV 78 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHH
Confidence 588999999999999999999999999999999998765432222223333334433332211 11111122 34488
Q ss_pred HHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCC-cccEEEE
Q 035624 711 EIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGN-KCSVLVV 769 (775)
Q Consensus 711 ~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~~svlvv 769 (775)
+++++ .++|++++|+|+. .++.+ --+|...+-+... . +++|||+
T Consensus 79 ~~~~~--~~~dllviG~~~~------~~~~~----~~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 79 EFARE--HNVTQIVVGKSRR------SRWRE----LFRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred HHHHH--cCCCEEEeCCCCC------chHHH----HhcccHHHHHHHh---CCCCeEEEe
Confidence 88887 8899999999973 12222 2678888888877 5 8899986
No 44
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.50 E-value=1.4e-06 Score=81.33 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=82.1
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC---CchhhhhHHHHHHHhhcC---CCeEEEEEeec--
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD---VDWETILDSEVLRDIKKT---ECMRYEKHVVE-- 704 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~---~~~~~~~d~~~~~~~~~~---~~v~y~e~~V~-- 704 (775)
+|+++..|.++.+.++++|.++|+..+++++++|+.++..... .+...+..++.++..... ...........
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH 80 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence 5889999999999999999999999999999999987532111 111112222233333221 11112212211
Q ss_pred -ChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 705 -NGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 705 -~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
-..++.+.+++ .++||+++|.++... | ...-+|..-+-+... ++|+||||+
T Consensus 81 ~~~~~I~~~a~~--~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 81 DIASGILRTAKE--RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CHHHHHHHHHHh--cCCCEEEEecCCCCC---------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 23568888877 789999999997421 1 234689999999888 889999985
No 45
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.47 E-value=1.3e-06 Score=83.42 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=92.1
Q ss_pred eeEEEEee-cCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcc---cccccccchHHHHHHHHcc
Q 035624 460 LQIVCCIY-IPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKK---NFSAYSYSENVIVSFKKFG 535 (775)
Q Consensus 460 ~rILvcv~-~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~f~~~~ 535 (775)
-+|+++++ .++....+.+.+...+ +.....++++++++-................ ........++..+..++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALA--KRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHH--HhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 47999999 9999999999988887 4455677788888755533221110000000 0000112234444444443
Q ss_pred ccCCcceE-EEEEEEEcCCCCc-HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 536 GLRWGAVS-INTFTAISPLDLM-HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 536 ~~~~~~v~-v~~~~~vs~~~~m-~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
++. .+. ++.... ..+. .+.|+..|.+.++|+|+||.+|+++.++.+ +|++.++|++++||||.++..
T Consensus 84 ~~~--~~~~~~~~~~---~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l------lGsvs~~v~~~~~~pVlvv~~ 152 (154)
T COG0589 84 EAA--GVPVVETEVV---EGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLL------LGSVAEKVLRHAPCPVLVVRS 152 (154)
T ss_pred HHc--CCCeeEEEEe---cCCCcHHHHHHHHHHhCCCEEEECCCCCcccccee------eehhHHHHHhcCCCCEEEEcc
Confidence 322 222 233222 3566 699999999999999999999998877643 899999999999999988754
No 46
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.40 E-value=1e-06 Score=82.16 Aligned_cols=125 Identities=19% Similarity=0.304 Sum_probs=84.2
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCc--hhh----hhHHHHHHH-------hhcCCCeE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVD--WET----ILDSEVLRD-------IKKTECMR 697 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~--~~~----~~d~~~~~~-------~~~~~~v~ 697 (775)
.+||++++.++++.++|+++|.++|+..+++++++|+.++....... ... ...+...+. ........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 47999999999999999999999999999999999999764332100 000 011111000 01112222
Q ss_pred EEEEeecC-hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 698 YEKHVVEN-GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 698 y~e~~V~~-g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
+......+ +.++.+++++ .++|++++|+++. .++.+ --+|.+.+-++.+ ++|+||||.
T Consensus 82 ~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~------~~~~~----~~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEE--HNADLIVMGSRGR------SGLER----LLFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEEEESSHHHHHHHHHHH--TTCSEEEEESSST------TSTTT----SSSHHHHHHHHHH---TSSEEEEEE
T ss_pred EEEEEeeccchhhhhcccc--ccceeEEEeccCC------CCccC----CCcCCHHHHHHHc---CCCCEEEeC
Confidence 22222222 4568888888 8999999999973 12222 2489999999998 899999983
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.37 E-value=1.1e-06 Score=83.74 Aligned_cols=124 Identities=13% Similarity=0.199 Sum_probs=80.9
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC------C--Cchhh---hhHHHHHHHhhcCCCeEEE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDG------D--VDWET---ILDSEVLRDIKKTECMRYE 699 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~------~--~~~~~---~~d~~~~~~~~~~~~v~y~ 699 (775)
.+||+++.+|.++.+.|+++|..+|+.++++++++|+..+.... . ++..+ +..++.++++.....+...
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPIT 82 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 57999999999999999999999999999999999995321110 0 00011 1111222333222112222
Q ss_pred EEeecC---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEee
Q 035624 700 KHVVEN---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQQ 772 (775)
Q Consensus 700 e~~V~~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq~ 772 (775)
+..+.. .++|.+.+++ .++|||++|+|++ ++. .+|-..+-+... ++|+||||...
T Consensus 83 ~~~~~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~~~------~lgSva~~v~~~---a~~pVLvv~~~ 140 (144)
T PRK15118 83 ETLSGSGDLGQVLVDAIKK--YDMDLVVCGHHQD-------FWS------KLMSSARQLINT---VHVDMLIVPLR 140 (144)
T ss_pred EEEEEecCHHHHHHHHHHH--hCCCEEEEeCccc-------HHH------HHHHHHHHHHhh---CCCCEEEecCC
Confidence 233322 4568888887 8999999999952 121 267777777777 89999999753
No 48
>PRK15456 universal stress protein UspG; Provisional
Probab=98.34 E-value=5.4e-06 Score=78.91 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=79.5
Q ss_pred cceEEEEecCCc--ChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC------CC--chh---hhhHHHHHHHhhcC---C
Q 035624 631 FSKVALLFLGGN--DDREALTLAKRMGRDNKVRLTVVHFIAASDDG------DV--DWE---TILDSEVLRDIKKT---E 694 (775)
Q Consensus 631 ~~~i~~~f~gg~--ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~------~~--~~~---~~~d~~~~~~~~~~---~ 694 (775)
.+||+++.+|++ ..+.|+++|.++|+.. .+++++|+.++.... .+ +.+ ++..++.++++... .
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999999984 7899999999999885 599999998652210 00 011 11222223333221 2
Q ss_pred CeEEEEEeecC---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 695 CMRYEKHVVEN---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 695 ~v~y~e~~V~~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
...+. ..+.. .++|.+.+++ .+.|||+||+|+. + +.+ .-+|-..+-++.. ++|+||||.
T Consensus 81 ~~~v~-~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~--~-----~~~----~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIK-QHVRFGSVRDEVNELAEE--LGADVVVIGSRNP--S-----IST----HLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CcceE-EEEcCCChHHHHHHHHhh--cCCCEEEEcCCCC--C-----ccc----eecCccHHHHHHc---CCCCEEEeC
Confidence 22222 22233 3456666666 7899999999962 2 222 2589999999999 999999983
No 49
>PRK10116 universal stress protein UspC; Provisional
Probab=98.31 E-value=1.3e-06 Score=83.05 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=79.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCC----CCC---c---hhhhhHHHHHHHhhcCCCeEEEE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDD----GDV---D---WETILDSEVLRDIKKTECMRYEK 700 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~----~~~---~---~~~~~d~~~~~~~~~~~~v~y~e 700 (775)
.+||+++..+.++...|+++|.++|+..++++|++++..+... ... + ..++..++++++...+..+...+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEK 82 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 5799999999999999999999999999999999999753211 000 0 01112223344433221111122
Q ss_pred EeecCh---hhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 701 HVVENG---ADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 701 ~~V~~g---~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
..+..| +++.+++++ .++||+|+|+|+. ++++.| +...+-++.. ++|+||||-
T Consensus 83 ~~~~~G~~~~~I~~~a~~--~~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 83 TFIAYGELSEHILEVCRK--HHFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred EEEecCCHHHHHHHHHHH--hCCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 233333 446777776 7899999999973 233333 2346666766 899999984
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.19 E-value=1.4e-05 Score=73.40 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=80.3
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC-------CchhhhhHHHHHHHhhcC-CCeEEEEEeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD-------VDWETILDSEVLRDIKKT-ECMRYEKHVVE 704 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~-~~v~y~e~~V~ 704 (775)
+|++++.+++..+.+++.|.++|+..+++++++++..+..... ....++..+++.+..+.. -.+.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 5788999999999999999999999999999999987543321 111222333333333122 12222222222
Q ss_pred ChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEE
Q 035624 705 NGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVV 769 (775)
Q Consensus 705 ~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvv 769 (775)
...++.+.+++ .++|++++|+++.. .|.+ --.|...+-+... ++++||+|
T Consensus 81 ~~~~i~~~~~~--~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAEE--LGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 24568888888 88999999998642 1211 2568888888877 77788874
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.80 E-value=0.0023 Score=67.40 Aligned_cols=247 Identities=15% Similarity=0.084 Sum_probs=136.4
Q ss_pred HHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCh--------hHHHHHHHHHhhccHHHHHHH
Q 035624 115 GIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTG--------PSGFFITPLYYVTSFPVIFCL 186 (775)
Q Consensus 115 gl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~--------~~~l~ig~~ls~Ts~~vv~~i 186 (775)
-+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++... ...+.+-++++.+....=..+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL 129 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLAL 129 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHH
Confidence 345788999999999999999999999999999999999999999987542 245555555556655555555
Q ss_pred HhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 035624 187 LTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKE 266 (775)
Q Consensus 187 L~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~ 266 (775)
..|+|- ++|.|-. +...++| .|++.-+.--.. +
T Consensus 130 ~~~yGd-~~D~gA~--~i~sl~~-----------------------------------------GPf~tMl~LG~s-G-- 162 (314)
T PF03812_consen 130 MGQYGD-EEDVGAF--SILSLND-----------------------------------------GPFFTMLALGAS-G-- 162 (314)
T ss_pred HHHhCC-HHHhHHH--HHHHhhh-----------------------------------------hHHHHHHHHhhc-c--
Confidence 566652 2333211 1111111 111110000000 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc---cC
Q 035624 267 VSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD---LR 343 (775)
Q Consensus 267 ~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~---l~ 343 (775)
..+..+ ...++..+ +++.|+++.|-. +++.+.+.+- ...++|+|-...|..+|+ +.
T Consensus 163 ~a~ip~---------~~lv~~ll--------P~iiG~iLGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~ 221 (314)
T PF03812_consen 163 LANIPW---------MSLVAALL--------PIIIGMILGNLD---PDFRKFLAPG-VPILIPFFGFALGAGINLSNIIK 221 (314)
T ss_pred ccCCCH---------HHHHHHHH--------HHHHHHHHhcCC---HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHH
Confidence 000000 11222233 788999998864 4444445544 578999999999999998 32
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhhhhHH----HHHHhhhccCCCCChhhHHHH
Q 035624 344 PQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW-KMHKNDAMALALIMNAKGIVE----MAFYTFASDGRYVPPNMFRFM 418 (775)
Q Consensus 344 ~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~-~~~~~~~~~lg~~l~~rG~v~----l~~~~~~~~~~ii~~~~~~~l 418 (775)
. ...+ +++-+...+.--...++.-|+. |-+..- |+.++.-+.-+ .+++..--+..-.-+..-..+
T Consensus 222 a----Gl~G--IlLgv~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQv 291 (314)
T PF03812_consen 222 A----GLSG--ILLGVIVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQV 291 (314)
T ss_pred h----Ccch--HHHHHHHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHH
Confidence 2 1111 1222222222333345555553 333222 22223222222 222222222222233444567
Q ss_pred HHHHHHHHHhHHHHHHhhcCc
Q 035624 419 LGIIIVMGSIVPIFVRKLYDP 439 (775)
Q Consensus 419 v~~~il~t~i~~~l~~~l~~~ 439 (775)
..++++|++++|.+++|.+|+
T Consensus 292 AaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 292 AAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 778889999999999999864
No 52
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.77 E-value=0.0036 Score=66.34 Aligned_cols=251 Identities=13% Similarity=0.033 Sum_probs=145.9
Q ss_pred HHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHhhccHHHHHHHHhhccc
Q 035624 116 IALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTG---PSGFFITPLYYVTSFPVIFCLLTHLKI 192 (775)
Q Consensus 116 l~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~---~~~l~ig~~ls~Ts~~vv~~iL~el~~ 192 (775)
+..++|-.|-++|++...+..||...+-..-++++.+++.+++.+++.+. ...+.+-.+++.|.-..=..+..|+|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG- 129 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFG- 129 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcC-
Confidence 45678999999999999999999888888899999999999999987542 25555556666666566666667777
Q ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHH
Q 035624 193 LNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGL 272 (775)
Q Consensus 193 ~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~ 272 (775)
-++|.|-. +...++|. +. ...+++.. .++- +.| .
T Consensus 130 ~~~d~gA~--~~~sl~~G------------------Pf------~tm~aLga----------~gLA-~ip---------~ 163 (312)
T PRK12460 130 DERDVGAI--SILSLNDG------------------PF------FTMLALGA----------AGLA-NIP---------I 163 (312)
T ss_pred CHhhhhHH--hhhhhccC------------------cH------HHHHHHHH----------HHHh-cCC---------h
Confidence 24444421 11112221 11 11111100 0111 111 0
Q ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhH
Q 035624 273 YVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIF 350 (775)
Q Consensus 273 ~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~ 350 (775)
. . .++ .+=|++.|+++.|..+ .+.+.+++- ..+.+|++-+..|.++|+ +.+ . .+
T Consensus 164 ~-~--------lv~--------lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~--~-G~ 219 (312)
T PRK12460 164 M-A--------LVA--------ALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQ--A-GL 219 (312)
T ss_pred H-H--------HHH--------HHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHH--h-Ch
Confidence 0 0 011 1225567777777532 233444443 356899999999999998 332 1 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH--HHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHh
Q 035624 351 IVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALA--LIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSI 428 (775)
Q Consensus 351 ~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg--~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i 428 (775)
..+++.+..++.-+..+++..|++|.+.+-++.+| ..-+.=|-..++...- ..+-.-+..-..+..++++|.++
T Consensus 220 --~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP--~~~~~~~~Ataqvaa~vivTail 295 (312)
T PRK12460 220 --AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADP--SLAPVAAAATAQVAASVIVTAIL 295 (312)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333344555666666788898888877777 4333333322222221 11222233344466678888889
Q ss_pred HHHHHHhhcCccc
Q 035624 429 VPIFVRKLYDPSR 441 (775)
Q Consensus 429 ~~~l~~~l~~~~~ 441 (775)
+|.++.|.+|+.+
T Consensus 296 ~P~~t~~~~k~~~ 308 (312)
T PRK12460 296 TPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999986543
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.64 E-value=0.00017 Score=78.86 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=70.3
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHcccc--
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGL-- 537 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-- 537 (775)
-|||+|+|.++++..+++-|..++.....+.+++++|+++....... .+ ......+++.+..++..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~----~~------~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE----GQ------DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc----hh------HHHHHHHHHHHHHHHHHHHhh
Confidence 37999999999999999999999832113589999999984321111 00 0001122333333333221
Q ss_pred --CCcceEEEEEEEEc-----CCCCcHHHHHHHHhhcCCcEEEEccc
Q 035624 538 --RWGAVSINTFTAIS-----PLDLMHDDICTLALDKLASLVILSFH 577 (775)
Q Consensus 538 --~~~~v~v~~~~~vs-----~~~~m~~~I~~~a~e~~adlIImg~h 577 (775)
...++++++.+... ..++.++.|++.|+++++|+||||-.
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 11467777655431 12699999999999999999999953
No 54
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.60 E-value=0.09 Score=58.39 Aligned_cols=297 Identities=15% Similarity=0.136 Sum_probs=148.1
Q ss_pred CCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHH
Q 035624 71 GIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISP 150 (775)
Q Consensus 71 ~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p 150 (775)
.+|.++-.++.|+++.. +|.+++ |...+..+.+.+..+-+-+++.=++.|+++++|.++|.+..=..+ .+.
T Consensus 24 ~l~~~vl~~~~~~~lsn-----lgli~~---p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~g 94 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN-----LGLIDS---PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AVG 94 (378)
T ss_pred hcCHHHHHHHHHHHHHH-----CCCcCC---CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HHH
Confidence 47888888899999987 566621 135567777888887777777778999999999998865533333 334
Q ss_pred HHHHHHHHHhh-cCC-hhHHHHHHHHHhhc------cHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035624 151 LVALIPTFMVP-TGT-GPSGFFITPLYYVT------SFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVS 222 (775)
Q Consensus 151 ~~~~~~~~~~l-~~~-~~~~l~ig~~ls~T------s~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~ 222 (775)
.++|+.+++++ +.. .+...-++.+++-| .+..+... ++. + ..+.-+....|.+...+.+.+....
T Consensus 95 ~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~-~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 95 TVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S-DSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHH---HCC---C-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555443 222 22233333333322 22333332 232 1 2233333334444433333333222
Q ss_pred hh-----CCC-ChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcccchHHHHHHHHHHHHHHHHHHHccch
Q 035624 223 QV-----ASS-SPAQ-ALRTLGYVVFFIFIVMVVVRPAMLLIVRM--TPEGKEVSQTGLYVVILILLLFLSFARKFYSEL 293 (775)
Q Consensus 223 ~~-----~~~-~~~~-~l~~~~~~i~~~~~~~~v~r~~~~~l~~~--~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~ 293 (775)
.. ... .... .....- ....+. .++.++.. ......+.+.+....++..+ +-.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~l-a~~ 228 (378)
T PF05684_consen 168 PPFARKFDRWTKADTSSIEALE-----------------EEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHAL-AAW 228 (378)
T ss_pred hhhhHHhhhccCCCccccchhh-----------------hhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHH-HHH
Confidence 11 000 0000 000000 000000 00001111 12223333333333333322 111
Q ss_pred -------------HHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHH
Q 035624 294 -------------TVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTV 358 (775)
Q Consensus 294 -------------~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~ 358 (775)
.++-....|++.... |..+.+ .--+.+ ..+++=+||+.+|++.|+ +.+ . . ..+++.
T Consensus 229 l~~~~~~~~~~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~--a-p---~~~l~~ 299 (378)
T PF05684_consen 229 LPPLFAGISSSTWLILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD--A-P---SLFLFG 299 (378)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH--h-H---HHHHHH
Confidence 223344455554332 444433 223344 578888999999999999 433 1 1 123344
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCh
Q 035624 359 AWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPP 412 (775)
Q Consensus 359 vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~ 412 (775)
++.+.+..+..++.+|++|.|..+.. ++-.-|.-|..+......+++..+..+
T Consensus 300 ~i~l~iH~~l~l~~~kl~k~~l~~~~-vAS~AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 300 FIILAIHLLLMLILGKLFKIDLFELL-VASNANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH-HHhhcccCCcchHHHHHHhcCCccHHH
Confidence 45556788888899999999997665 444456666666655555555444433
No 55
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.47 E-value=0.11 Score=55.72 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHH--
Q 035624 107 LIGSMGNIGIALFIFQSGVKMDLSMVSKVGR---KALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFP-- 181 (775)
Q Consensus 107 ~l~~l~~igl~~llF~~Gle~d~~~lk~~~~---~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~-- 181 (775)
+++..-.+.+.++||..|+.+..+++++..+ ..+.....++.+--++++++++.+. .+.-+..|..+..+.+.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHhHHheeeCCCch
Confidence 3443447888999999999999999886554 4455555556555566777777765 44556666666332222
Q ss_pred --HHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHH-HhhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 182 --VIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTV-SQVA--SSSPAQALRTLGYVVFFIFIVMVVVRPAMLL 256 (775)
Q Consensus 182 --vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~-~~~~--~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~ 256 (775)
.+...+. +.+. -++++.+.++.+++.++.-+... +.++ +.+.+..++.++..++.-++.+.+.|+..+.
T Consensus 113 ~S~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~ 186 (319)
T COG0385 113 ASNAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186 (319)
T ss_pred hHHHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 2222 35667777888888877644433 2222 2245667777777777777888888988776
Q ss_pred HHHHc
Q 035624 257 IVRMT 261 (775)
Q Consensus 257 l~~~~ 261 (775)
..++.
T Consensus 187 ~~~~~ 191 (319)
T COG0385 187 WVERL 191 (319)
T ss_pred HHHHH
Confidence 66654
No 56
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.41 E-value=0.0009 Score=73.30 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=67.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCC--CeEEEEEEeeecCCCCCC-chh----hhhHHHHHHHhhcC-----CCeEE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDN--KVRLTVVHFIAASDDGDV-DWE----TILDSEVLRDIKKT-----ECMRY 698 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~--~~~ltvl~~~~~~~~~~~-~~~----~~~d~~~~~~~~~~-----~~v~y 698 (775)
.+||+++++|.+..+.|+++|..+|+.. ++++|++|++++...... +.. ++..++..++.+.. ..+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 6799999999999999999999999985 699999999875332211 111 12223333333221 13444
Q ss_pred EEEeec----------ChhhHHHHHHhcccCCcEEEEcccCC
Q 035624 699 EKHVVE----------NGADTVEIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 699 ~e~~V~----------~g~~i~~~i~~~~~~~DLiivG~~~~ 730 (775)
....++ -.++|++++++ .++|||+||..-.
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Aee--~~aDLIVm~~~~~ 124 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAEE--HGIDRVVLDPEYN 124 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHH--cCCCEEEECCCCC
Confidence 433332 26678999998 8999999999864
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.37 E-value=0.14 Score=55.35 Aligned_cols=325 Identities=16% Similarity=0.150 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCh--hHH-HHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhc
Q 035624 49 IMLLLATMFTISQVFHSVLKRFGIPI--FIS-QIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGV 125 (775)
Q Consensus 49 ~l~~i~lil~~~~~~~~ll~rl~~P~--iv~-~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gl 125 (775)
...|.++.+.++...++++..+++|. ..| -+++|++.+-.. ... .-. ..+...|.+.+=-.+|.
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~---~~l-------~~P---~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG---LTL-------PLP---RGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc---ccc-------cCC---hHHHHHHHHHHHHHHhh
Confidence 35678888899999999999999864 455 566666666322 111 111 34455666666678899
Q ss_pred ccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhc----CChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHH
Q 035624 126 KMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPT----GTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLA 201 (775)
Q Consensus 126 e~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~----~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ 201 (775)
++.++.+... ++.+.+.....+.+...+...+|++. .+...+++-..--..+..+.+ -+|.| .+.+.--+.
T Consensus 74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~gs~PGgas~m~~i---A~d~g-Ad~~~VAl~ 148 (352)
T COG3180 74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFLGSSPGGASAMVSI---AQDYG-ADLRLVALM 148 (352)
T ss_pred hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHhcCCchHHHHHHH---HHHhC-CChhHHHHH
Confidence 9988875332 33333333334444444444444432 222233322221122222222 23444 122111000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---C---cccchHHHHH
Q 035624 202 QSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEG---K---EVSQTGLYVV 275 (775)
Q Consensus 202 ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~---~---~~~e~~~~~~ 275 (775)
+.++ .+.+...+.++.+.... .++..+. . +.....+.+.
T Consensus 149 -----------------------------Q~lR----vl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l 193 (352)
T COG3180 149 -----------------------------QYLR----VLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLL 193 (352)
T ss_pred -----------------------------HHHH----HHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHH
Confidence 0111 11111122223322211 0111111 0 1111113334
Q ss_pred HHHHHHHHHHHHHHccch--HHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHH
Q 035624 276 ILILLLFLSFARKFYSEL--TVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFI 351 (775)
Q Consensus 276 l~~~l~~~~~a~~~~g~~--~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~ 351 (775)
+...++.+.+...+ ++. .++|+++.|..+.-.....-++.+=+ ..+-.-+.-..+|.++|- +.. .....
T Consensus 194 ~~~~~~~g~l~~~l-r~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~--~~r~~ 266 (352)
T COG3180 194 ILAALLGGLLGKLL-RFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILRE--AKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHH--hHhhc
Confidence 44445555555655 654 46778887777765531111111111 112223445577888885 222 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHH-HHHHHHHHHhHH
Q 035624 352 VQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFM-LGIIIVMGSIVP 430 (775)
Q Consensus 352 ~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~l-v~~~il~t~i~~ 430 (775)
...++.++..++.-...+++..++.+.++.++.. ..+|.|.-+++....+.+.. ...-..+ ++=.++...+.|
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad---~a~V~a~q~lRll~il~i~p 340 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGAD---PAFVMALQVLRLLFILLLGP 340 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566667777888899999988763 45899998888777666532 2111111 222233334458
Q ss_pred HHHHhhcCc
Q 035624 431 IFVRKLYDP 439 (775)
Q Consensus 431 ~l~~~l~~~ 439 (775)
++.|++.|.
T Consensus 341 ~l~r~l~~~ 349 (352)
T COG3180 341 ALARFLSKR 349 (352)
T ss_pred HHHHHHHHH
Confidence 888887643
No 58
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.35 E-value=0.028 Score=61.03 Aligned_cols=301 Identities=10% Similarity=0.049 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhCCChhHHHHhhhceeccccchhcccccc-ccCc-ccHHHHHHHHHHHHHHHHHHHh
Q 035624 50 MLLLATMFTISQVFHS---VLKRFGIPIFISQIFVSILTFDDFFLVIKMENK-IITP-EHVQLIGSMGNIGIALFIFQSG 124 (775)
Q Consensus 50 l~~i~lil~~~~~~~~---ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~-~~f~-~~~~~l~~l~~igl~~llF~~G 124 (775)
+.-.++++++++.+-. ++||+.+|..+.-=+...+++|.. .+.... .=|+ ...+ .-...+.=.+|
T Consensus 11 l~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~---~~~~~~~~~fd~~l~~-------~fmliFFttig 80 (404)
T COG0786 11 LILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLL---HGFGGVSLNFDTSLQD-------VFMLIFFATIG 80 (404)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHH---HhcceEEEeCCccccc-------HHHHHHHHHhc
Confidence 4445555566666544 778889997663333333444443 332211 1122 1111 12233444689
Q ss_pred cccChHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHhhcCChhHHHHHHHHHhhc----cHHHHHHHHhhccccCChh
Q 035624 125 VKMDLSMVSKVGRKALYIGILSVISPL---VALIPTFMVPTGTGPSGFFITPLYYVT----SFPVIFCLLTHLKILNSEL 197 (775)
Q Consensus 125 le~d~~~lk~~~~~~~~i~~~~~l~p~---~~~~~~~~~l~~~~~~~l~ig~~ls~T----s~~vv~~iL~el~~~~s~~ 197 (775)
+..+++.+||-+|+....-.....+-. .++..++.+++.+....+..|.+ +.+ ..+...+.++|+|..+ -
T Consensus 81 lsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsI-sl~GGHGtaAA~~~~f~~~G~~~--A 157 (404)
T COG0786 81 LSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSI-SLVGGHGTAAAWGPTFEDLGAEG--A 157 (404)
T ss_pred cccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcce-eecCCCchHHHHHHHHHhcCCcc--h
Confidence 999999999999997654333332222 24444455555433333222111 110 0122223333333210 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC-CCCcccc------
Q 035624 198 GRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFI-FIVMVVVRPAMLLIVRMTP-EGKEVSQ------ 269 (775)
Q Consensus 198 g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~-~~~~~v~r~~~~~l~~~~~-~~~~~~e------ 269 (775)
..+++ . ..-|. +..+.+..|+.+|+++|.. +.++.++
T Consensus 158 ~~va~----------------------------------A-~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~ 202 (404)
T COG0786 158 TEVAM----------------------------------A-SATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLV 202 (404)
T ss_pred HHHHH----------------------------------H-HHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcc
Confidence 11111 1 11122 2334566788889887751 1111111
Q ss_pred ------------------hHHHHHHHHH-HHHHHHHHHHcc-----chHHHHHHHHHhhccCCCCc--hhHHHHhhhhhh
Q 035624 270 ------------------TGLYVVILIL-LLFLSFARKFYS-----ELTVAGLYIVGLAVPRGPPL--GSALVNKFDCLV 323 (775)
Q Consensus 270 ------------------~~~~~~l~~~-l~~~~~a~~~~g-----~~~~lgaf~aGl~~~~~~~~--~~~l~~~l~~~~ 323 (775)
.....+++++ .+-.++.+++ + ++...++++.|.++.+.-+. ..++.++..+..
T Consensus 203 ~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l-~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~i 281 (404)
T COG0786 203 DVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLL-KSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVI 281 (404)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHH
Confidence 0111222333 3334455555 5 56778999999999885211 112333333444
Q ss_pred HhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-hhhHHHHH
Q 035624 324 SGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNA-KGIVEMAF 400 (775)
Q Consensus 324 ~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~-rG~v~l~~ 400 (775)
.++-+-+|....=|++.+ +.+ .|+..++++.+-..+.-+.+.+..-|..|-++..+..-+.-++. -|...-++
T Consensus 282 g~vsL~lflamALmSlkLweL~~----l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAi 357 (404)
T COG0786 282 GNVSLSLFLAMALMSLKLWELAD----LALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAI 357 (404)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHH
Confidence 677788888877777777 444 22233444444455556666777778888777666543332322 24444455
Q ss_pred Hhh
Q 035624 401 YTF 403 (775)
Q Consensus 401 ~~~ 403 (775)
++.
T Consensus 358 anM 360 (404)
T COG0786 358 ANM 360 (404)
T ss_pred Hhh
Confidence 554
No 59
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.089 Score=56.19 Aligned_cols=232 Identities=12% Similarity=0.058 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh----ccH
Q 035624 108 IGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIG---ILSVISPLVALIPTFMVPTGTGPSGFFITPLYYV----TSF 180 (775)
Q Consensus 108 l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~---~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~----Ts~ 180 (775)
++.--.+|+.+.|+=.=+++|++++++..++.-.+. ....++--++.+++++++..+.+ ....|.++-- ||.
T Consensus 49 ~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la~~fl~~~p-ey~~GlILlglApC~aM 127 (342)
T COG0798 49 VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEP-EYRAGLILLGLAPCIAM 127 (342)
T ss_pred eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHhhhhHHH
Confidence 344456788888888888999999988766532222 22233222334455555544433 3444444432 333
Q ss_pred HHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 181 PVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRM 260 (775)
Q Consensus 181 ~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~ 260 (775)
..+-. ++.+.+. ..++..-.+||++.+++++.....--+..+..-.++.++..+...+.+-++.+.+.++...|
T Consensus 128 Vivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k 201 (342)
T COG0798 128 VIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIK 201 (342)
T ss_pred HHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2333332 34455567899998888864443211111222234455555544444555555555555555
Q ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhccc
Q 035624 261 TPEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIH 340 (775)
Q Consensus 261 ~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id 340 (775)
.... |.+ .++...+++++.---++-..++..+.+-+
T Consensus 202 ~kg~----~~~----------------------------------------~~~f~p~ispi~ligLl~TivliF~~qg~ 237 (342)
T COG0798 202 KKGR----EWY----------------------------------------ESRFLPKISPIALIGLLLTIVLIFAFQGE 237 (342)
T ss_pred hccc----hHH----------------------------------------HHHHHhhcChHHHHHHHHHHHHHHHHhHH
Confidence 4321 100 01111112211111111112223344445
Q ss_pred c-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 035624 341 D-LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAK 393 (775)
Q Consensus 341 ~-l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~r 393 (775)
. ..+ +.. +..+++-.+.-+...+..+++.++..|.|.+++..+++....+
T Consensus 238 ~Iv~~--p~~-i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN 288 (342)
T COG0798 238 QIVEQ--PLD-ILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN 288 (342)
T ss_pred HHHhC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc
Confidence 4 344 434 2344455555566777888888999999999998777644443
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.24 E-value=0.21 Score=55.36 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHhhccCCC------CchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHH
Q 035624 291 SELTVAGLYIVGLAVPRGP------PLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIV 362 (775)
Q Consensus 291 g~~~~lgaf~aGl~~~~~~------~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~ 362 (775)
.++...++++.|+++.+.. ...++..+++. ++.+-+|.+..=+.+++ +.+ .+..+.+++++-.+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~----~~sL~~fl~~almsl~l~~l~~----~a~Plliil~~q~i 317 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRIS----GISLDLFLAMALMSLKLWVLAD----YALPLLIILAVQTI 317 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHH----HHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHH
Confidence 4567899999999998742 12333444444 44444554444455555 444 22232333333333
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035624 363 LVKFGTCSLLLLYWKMHKNDAMALALIM 390 (775)
Q Consensus 363 ~~K~l~~~l~~~~~~~~~~~~~~lg~~l 390 (775)
+.=+...++..|..|-++ |+..++...
T Consensus 318 ~~~~f~~fv~fr~~gkdy-daavm~~G~ 344 (368)
T PF03616_consen 318 LMVLFAYFVTFRVMGKDY-DAAVMSAGF 344 (368)
T ss_pred HHHHHHHHHhhhhhCCCh-hHHHHhhhh
Confidence 444455566677888775 665554443
No 61
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.16 E-value=0.42 Score=52.06 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHhhCCChhHHHHhhhceeccccchhccccccccCccc-HHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHH
Q 035624 67 LKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEH-VQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGIL 145 (775)
Q Consensus 67 l~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~-~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~ 145 (775)
+++.+++.++--|+.|+++|+.. ....++ -+.+. .-.-+.+=++|++ +.|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~---~~~~~~-~~~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTI---YPQRDE-EKKRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccc---cccchh-hccchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 34568999998999999999853 211111 01011 1133456677777 679999999999999999888887
Q ss_pred HHHHHHHHHHHHH-HhhcCChhHHHHHHHHHhh
Q 035624 146 SVISPLVALIPTF-MVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 146 ~~l~p~~~~~~~~-~~l~~~~~~~l~ig~~ls~ 177 (775)
.+...+.++..++ ..++.+...+++++.--+.
T Consensus 98 ~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsI 130 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSI 130 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHcchhH
Confidence 7877888777777 5788777766666654443
No 62
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.02 E-value=0.0084 Score=56.85 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=84.9
Q ss_pred cceEEEEec-CCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC--------------chhhhhHHHHHHHhhcC--
Q 035624 631 FSKVALLFL-GGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDV--------------DWETILDSEVLRDIKKT-- 693 (775)
Q Consensus 631 ~~~i~~~f~-gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~--------------~~~~~~d~~~~~~~~~~-- 693 (775)
.+++++.+. |.+..+.|++.+..+++..+..++++++..+...... ...++..++..++.+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999 9999999999999999999999998888754321110 01123334455555432
Q ss_pred -CCeEEEEEeecC----hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEE
Q 035624 694 -ECMRYEKHVVEN----GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLV 768 (775)
Q Consensus 694 -~~v~y~e~~V~~----g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlv 768 (775)
......+..+.. .+++.+..++ .++|||++|+++. +.|.+ --||-..+-++.. ++++|||
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~--~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEE--EDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHH--hCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCEEE
Confidence 111112222222 2455666666 5899999999842 22222 4789999999999 9999999
Q ss_pred EEee
Q 035624 769 VQQQ 772 (775)
Q Consensus 769 vqq~ 772 (775)
+...
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 9753
No 63
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.02 E-value=0.022 Score=59.84 Aligned_cols=250 Identities=16% Similarity=0.131 Sum_probs=129.7
Q ss_pred HHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCh--------hHHHHHHHHHhhccHHHHHHHH
Q 035624 116 IALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTG--------PSGFFITPLYYVTSFPVIFCLL 187 (775)
Q Consensus 116 l~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~--------~~~l~ig~~ls~Ts~~vv~~iL 187 (775)
+..++|-.|-++|++...+..||...+-..-+++..+++.+++.+++... ...+.+-.+++.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45678999999999998888888888888889999999999999987542 1334444444444444444444
Q ss_pred hhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 035624 188 THLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEV 267 (775)
Q Consensus 188 ~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~ 267 (775)
.|+| -++|.|-. +...++|. + +...+.+. .. + .
T Consensus 131 ~qyG-d~~D~gA~--~i~sl~~G------------------P------f~TMi~LG-----------------~s-G--l 163 (314)
T TIGR00793 131 QQYG-TKEEAGAF--VLMSLESG------------------P------LMTMVILG-----------------TA-G--I 163 (314)
T ss_pred HHcC-CHhhhhhh--hhhhhccC------------------c------HHHHHHHh-----------------hc-c--C
Confidence 5555 12333311 10111110 0 00010000 00 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--c-CC
Q 035624 268 SQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--L-RP 344 (775)
Q Consensus 268 ~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l-~~ 344 (775)
-+..+ .++++- +=+++.|+++.|-. +++.+.+.+- ...++|+|-...|..+|+ + ..
T Consensus 164 A~ip~---------~~lv~~--------ilPlliG~ilGNLD---~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~a 222 (314)
T TIGR00793 164 ASFEP---------HVFVGA--------VLPFLVGFALGNLD---PELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQT 222 (314)
T ss_pred CCCCH---------HHHHHH--------HHHHHHHHHHhcCC---HHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHh
Confidence 01101 112222 23788899998864 3444445543 568899999999999998 3 32
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHH
Q 035624 345 QSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWK-MHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIII 423 (775)
Q Consensus 345 ~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~-~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~i 423 (775)
...+ +++-+...+.--...++.-|+.+ -+..-....+-.-..--....+++..--+..-.-+..-..+..+++
T Consensus 223 ----Gl~G--IlLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavi 296 (314)
T TIGR00793 223 ----GLLG--ILLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVI 296 (314)
T ss_pred ----Ccch--HHHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 1111 12112222233344555666653 2322233322111111111122222211222222333344566778
Q ss_pred HHHHhHHHHHHhhcCc
Q 035624 424 VMGSIVPIFVRKLYDP 439 (775)
Q Consensus 424 l~t~i~~~l~~~l~~~ 439 (775)
+|.+++|.++.|.+|+
T Consensus 297 vTaiL~Pilta~~~kr 312 (314)
T TIGR00793 297 VTSLLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888899999998864
No 64
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.81 E-value=0.75 Score=49.92 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhcccChHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhc-----cH
Q 035624 109 GSMGNIGIALFIFQSGVKMDLSMVSKVGRKA---LYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVT-----SF 180 (775)
Q Consensus 109 ~~l~~igl~~llF~~Gle~d~~~lk~~~~~~---~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~T-----s~ 180 (775)
+....+++..++|.-|++++.+++++..++. ...-...+++.-++++++...+....+..+..|..+... +.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS 109 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence 3566778888889999999999998765543 333333444444456666665543334445555555332 22
Q ss_pred HHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHH-Hh-hCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 181 PVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTV-SQ-VAS--SSPAQALRTLGYVVFFIFIVMVVVRPAMLL 256 (775)
Q Consensus 181 ~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~-~~-~~~--~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~ 256 (775)
.++. ... .+.+ -..++..+.++.+++.++.-+... .. .++ .+....+..+...++.-.+++.+.|+...+
T Consensus 110 ~v~~---T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~~~~ 183 (313)
T PF13593_consen 110 SVVL---TRL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRWVPK 183 (313)
T ss_pred HHHH---HHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 222 2233 235666777888888877643333 22 111 222344455555555556667777766555
Q ss_pred HHHH
Q 035624 257 IVRM 260 (775)
Q Consensus 257 l~~~ 260 (775)
..+|
T Consensus 184 ~~~~ 187 (313)
T PF13593_consen 184 WVAR 187 (313)
T ss_pred HHHH
Confidence 4444
No 65
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.80 E-value=0.45 Score=53.16 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhCCChhH-HHHhh--hceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHH
Q 035624 50 MLLLATMFTISQVFHS---VLKRFGIPIFI-SQIFV--SILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQS 123 (775)
Q Consensus 50 l~~i~lil~~~~~~~~---ll~rl~~P~iv-~~Ila--GillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~ 123 (775)
+.-.++++++++.+-. +++|+.+|..+ |-+++ +..++|.. ++..- .|+ .+ +-+.-+.++.=.+
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~---~~~~~--~fd--~~----l~~~lm~~fFati 77 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKI---FGTEV--NFD--FS----LRDPLMLIFFTTI 77 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh---ccEEE--EcC--hh----HHHHHHHHHHHHh
Confidence 4444555555555443 67888998654 33333 34446765 55421 122 11 2223344455567
Q ss_pred hcccChHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHhhcCC
Q 035624 124 GVKMDLSMVSKVGRKALYIGILS---VISPLVALIPTFMVPTGT 164 (775)
Q Consensus 124 Gle~d~~~lk~~~~~~~~i~~~~---~l~p~~~~~~~~~~l~~~ 164 (775)
|+..+++.+||-+|+........ ...--++|..++..++.+
T Consensus 78 gLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~ 121 (398)
T TIGR00210 78 GLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQA 121 (398)
T ss_pred hhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88899999999888876555543 333345666666666544
No 66
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.79 E-value=0.05 Score=64.66 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhh
Q 035624 57 FTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVG 136 (775)
Q Consensus 57 l~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~ 136 (775)
+++.....++...+|++..+|-.++|++++.+- +.. +-+..++.+..+-+.+|+..+|+++|+..+..++
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~---~~~-------~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~ 294 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASSE---YRH-------ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENP 294 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCc---cHH-------HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 334445567788889999999999999998654 322 2345566667777778888899999999887766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc-HH-HHHHHHhhccccCCh
Q 035624 137 RKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS-FP-VIFCLLTHLKILNSE 196 (775)
Q Consensus 137 ~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts-~~-vv~~iL~el~~~~s~ 196 (775)
...+.+.+..++.=++.+++.+.+++.++..++.+|..++.-+ +. +++.+-.+.|+++.+
T Consensus 295 ~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~ 356 (621)
T PRK03562 295 LRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPE 356 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHH
Confidence 5544443444444455666777788888889999998887533 22 223344455555443
No 67
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.71 E-value=1.2 Score=48.69 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcccChHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHhhccHHH-HHHHHh
Q 035624 114 IGIALFIFQSGVKMDLSMVSKVGRKALY---IGILSVISPLVALIPTFMVP-TGTGPSGFFITPLYYVTSFPV-IFCLLT 188 (775)
Q Consensus 114 igl~~llF~~Gle~d~~~lk~~~~~~~~---i~~~~~l~p~~~~~~~~~~l-~~~~~~~l~ig~~ls~Ts~~v-v~~iL~ 188 (775)
++++++||-.|++++++++++..|+... .-...+++--++++.+++.+ +.+ ..+.+|.++....+.- .+-+..
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~--p~l~~GliLv~~~Pgg~~S~v~T 124 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL--FEYIAGLILLGLARCIAMVFVWN 124 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHhcchHHHHHHHH
Confidence 4566899999999999999887665333 22333433334566666654 332 3366666664433222 222333
Q ss_pred hccccCChhHHHHHHHHHHHhHHHHHHH
Q 035624 189 HLKILNSELGRLAQSSAIVADFLSYATV 216 (775)
Q Consensus 189 el~~~~s~~g~l~ls~a~i~D~~~~i~l 216 (775)
.+ .+.+.. ++++.+.++-+++.++.
T Consensus 125 ~l--AkGnva-lsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 125 QL--AKGDPE-YTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HH--cCCCHH-HHHHHHHHHHHHHHHHH
Confidence 33 334433 55555666666665555
No 68
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.70 E-value=0.25 Score=53.18 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=74.7
Q ss_pred hhCCChhHHHHhhhceeccccchhccccccccCcccHHH-HHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHH
Q 035624 69 RFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQL-IGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSV 147 (775)
Q Consensus 69 rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~-l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~ 147 (775)
...++..+--|+.|+++|+.. ++..+. +.+.... -+.+-++|++ +.|.++++.++.+.+.+...+....+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~---~~~~~~--~~~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLF---FGLPAR--FKPGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhc---cCCcHH--HHhHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHH
Confidence 457888888899999999733 343221 1111222 2356667776 67999999999999999998888889
Q ss_pred HHHHHHHHHHH-HhhcCChhHHHHHHHHHhhc
Q 035624 148 ISPLVALIPTF-MVPTGTGPSGFFITPLYYVT 178 (775)
Q Consensus 148 l~p~~~~~~~~-~~l~~~~~~~l~ig~~ls~T 178 (775)
...+.++..++ ..++.+...+.+++.-.+..
T Consensus 94 ~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsIC 125 (305)
T PF03601_consen 94 ILTFLLTYWLGRRLFGLDRKLAILIAAGTSIC 125 (305)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 89999998888 88888887777777666553
No 69
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.70 E-value=0.067 Score=63.44 Aligned_cols=110 Identities=10% Similarity=0.060 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhH
Q 035624 60 SQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKA 139 (775)
Q Consensus 60 ~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~ 139 (775)
.....++.+.+|++..+|-.++|++++.+- +.. +-...++.+..+-+.+|...+|+++|++.+..++...
T Consensus 225 vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~---~~~-------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 225 VLGSALFMDALGLSMALGTFIAGVLLAESE---YRH-------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCCc---hHH-------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 344556778899999999999999998754 322 2344566677777888889999999999988776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc
Q 035624 140 LYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS 179 (775)
Q Consensus 140 ~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts 179 (775)
+.+.+..++.=++.+++.+.+++.++..++.+|..++.-+
T Consensus 295 l~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~G 334 (601)
T PRK03659 295 LISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGG 334 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 4444444444455566667777888888888888877643
No 70
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.61 E-value=1.2 Score=47.72 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcccChHHHHhhhhh--HHHHHHH-HHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc-HHHHHHHHhh
Q 035624 114 IGIALFIFQSGVKMDLSMVSKVGRK--ALYIGIL-SVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS-FPVIFCLLTH 189 (775)
Q Consensus 114 igl~~llF~~Gle~d~~~lk~~~~~--~~~i~~~-~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts-~~vv~~iL~e 189 (775)
..+.+.||..|+.++++++++..++ ....+.. .+++--++++.++.+++.+ .....|.++.... .++.+.++.+
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~--~~~~~glvL~~~~P~~~~s~v~t~ 89 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLP--PELAVGVLIVGCCPGGTASNVFTY 89 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHheeeCCCchHHHHHHH
Confidence 3478899999999999999987763 3333333 4433334456666666543 3344444442221 1222233333
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHH
Q 035624 190 LKILNSELGRLAQSSAIVADFLSYATVL 217 (775)
Q Consensus 190 l~~~~s~~g~l~ls~a~i~D~~~~i~l~ 217 (775)
+- +.+ ..++.+...++-+++.+.+-
T Consensus 90 ~~--~gn-~~la~~~~~~stlls~vt~P 114 (286)
T TIGR00841 90 LL--KGD-MALSISMTTCSTLLALGMMP 114 (286)
T ss_pred Hh--CCC-HhhhhHHHHHHHHHHHHHHH
Confidence 22 222 34455555566666665553
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=96.44 E-value=0.019 Score=71.25 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=88.0
Q ss_pred CCceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccc
Q 035624 457 ESELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGG 536 (775)
Q Consensus 457 ~~e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 536 (775)
....|||||++..++...+++-+..++ .+.+++.+++|+.....+.. ..+ ..+++.+.++ +++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA--~~~~a~~~~l~V~~~~~~~~----~~~----------~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLA--ARLGSVWHAVYVETPRLHRL----PEK----------KRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHH--HhcCCCEEEEEEecCCcCcC----CHH----------HHHHHHHHHH-HHH
Confidence 356789999999999999999999998 44668999999854211111 111 1133444443 554
Q ss_pred cCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcC
Q 035624 537 LRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDH 614 (775)
Q Consensus 537 ~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr 614 (775)
+-++ ++.. + ..+++.+.|.++|++++++.||||-.++.++ + ..+++.+++++.+| .+|-|+-+.
T Consensus 311 ~lGa--~~~~---~-~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 311 ELGA--ETAT---L-SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HcCC--EEEE---E-eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEEeCC
Confidence 3222 2332 2 2479999999999999999999998765432 1 13478999999999 888888544
No 72
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.25 E-value=0.026 Score=56.38 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=86.4
Q ss_pred HHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccCh-----HHHHhhhhhHHHHHHHHHHHH
Q 035624 76 ISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDL-----SMVSKVGRKALYIGILSVISP 150 (775)
Q Consensus 76 v~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~-----~~lk~~~~~~~~i~~~~~l~p 150 (775)
++.+++|+++|-.. .. .....+...+..+.+++|.+|+++-- +.+|+.+++++.+.+...+-+
T Consensus 2 l~~li~Gi~lG~~~-----~~-------~~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS 69 (191)
T PF03956_consen 2 LIALILGILLGYFL-----RP-------PFSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS 69 (191)
T ss_pred eeeHHHHHHHHHHh-----cc-------cccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567888888543 21 11222667888899999999998844 456777899999999999999
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHH
Q 035624 151 LVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLL 218 (775)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~ 218 (775)
++.+.+++.+++.++.+++.+++-+.==| ....++.|++ +.++|.++.-+=++.+++++++.-+
T Consensus 70 llgg~l~~~ll~~~~~~~lav~sG~GwYS--lsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 70 LLGGLLASLLLGLSLKESLAVASGFGWYS--LSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccCcHHH--hHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99899999888888878777776553211 1112234432 4578877776666666666655543
No 73
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.08 E-value=0.2 Score=54.40 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035624 117 ALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTG 163 (775)
Q Consensus 117 ~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~ 163 (775)
..++|-.|-.+|++...+..||...+.+.-+.+..+++.+++.+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 37789999999999988888998888888888888888887777654
No 74
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.08 E-value=2.7 Score=45.71 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHccch--HHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchh
Q 035624 273 YVVILILLLFLSFARKFYSEL--TVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFN 348 (775)
Q Consensus 273 ~~~l~~~l~~~~~a~~~~g~~--~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~ 348 (775)
...+....+.+++.+.+ ++. .++|+++.+.++.-.....-.+-+.+ ..+..-+.=..+|.+++. +.. ..
T Consensus 158 ~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~--~~ 230 (318)
T PF05145_consen 158 ALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRE--LR 230 (318)
T ss_pred HHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHH--HH
Confidence 34445556677778887 775 57888887777654311111111111 122233445677888887 333 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHh
Q 035624 349 IFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSI 428 (775)
Q Consensus 349 ~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i 428 (775)
.++...++..++.+..-.+.+++..++.++|+.+++. .+.|-|.-|+.+.....+...---..+..+ =.+...++
T Consensus 231 ~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~--Rl~~v~~~ 305 (318)
T PF05145_consen 231 RLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVV--RLLFVLLL 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHH
Confidence 2234455556666677888888889999999988763 468999998888776665432111222222 12222345
Q ss_pred HHHHHHhhcC
Q 035624 429 VPIFVRKLYD 438 (775)
Q Consensus 429 ~~~l~~~l~~ 438 (775)
.|++.|++.|
T Consensus 306 ~p~~~r~~~r 315 (318)
T PF05145_consen 306 APFIARWLRR 315 (318)
T ss_pred HHHHHHHHHH
Confidence 7788888764
No 75
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.01 E-value=1.6 Score=48.49 Aligned_cols=318 Identities=12% Similarity=0.028 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhce---eccccchhccccccccCcccHHHHHHHHHHHHHHHH----HH
Q 035624 50 MLLLATMFTISQVFHSVLKRFGIPIFISQIFVSIL---TFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFI----FQ 122 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGil---lGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~ll----F~ 122 (775)
.--++++.+++.+++++=+| +|.+=.|+=+|.+ ++|+.++..|++++ +..+.++.+-+-.=.+.+ ..
T Consensus 31 ~g~~a~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~~~~ip~----~~~~~v~~fm~~~~Fl~ffIa~LI 104 (414)
T PF03390_consen 31 IGGFAVMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVYFGLIPE----SVVEAVTNFMKGSNFLYFFIAALI 104 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHhccCChHHHHHHHHH
Confidence 34445555666666665554 3433333333332 35655333555432 222222222211111112 22
Q ss_pred Hh--cccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHH-HHHHh-----hccHHHHHHHHhhccccC
Q 035624 123 SG--VKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFI-TPLYY-----VTSFPVIFCLLTHLKILN 194 (775)
Q Consensus 123 ~G--le~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~i-g~~ls-----~Ts~~vv~~iL~el~~~~ 194 (775)
.| +.||-+.+.|...|.+..-+.+.+..++++.+++.+++..+..+++. ..-+- .-+.|...-.-+-.+...
T Consensus 105 ~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~ 184 (414)
T PF03390_consen 105 VGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDA 184 (414)
T ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCH
Confidence 33 48999999999999888888899999999999999998876544332 22111 111222111111122222
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHhh------CCC------C---hh-------HHHHHHHHHHHHHHHHHHHHHH
Q 035624 195 SELGRLAQSSAIVADFLSYATVLLLTVSQV------ASS------S---PA-------QALRTLGYVVFFIFIVMVVVRP 252 (775)
Q Consensus 195 s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~------~~~------~---~~-------~~l~~~~~~i~~~~~~~~v~r~ 252 (775)
.++=..++.+.++.++++++.-++..-+.. +++ + .. .....+. .-+++.+.+|....
T Consensus 185 ~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g-~Gllla~~~y~~G~ 263 (414)
T PF03390_consen 185 EEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG-AGLLLACSFYILGV 263 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH-HHHHHHHHHHHHHH
Confidence 333333444455555555555444432211 000 0 00 0011111 11122222333332
Q ss_pred HHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCC---CCchhHHHHhhhhhhHhhhHH
Q 035624 253 AMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRG---PPLGSALVNKFDCLVSGFFLP 329 (775)
Q Consensus 253 ~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~---~~~~~~l~~~l~~~~~~~f~P 329 (775)
+...++ ++|...-..++=.++.-. |+.-++=..+...+...-+.+
T Consensus 264 ll~~~i--------------------------------~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~ 311 (414)
T PF03390_consen 264 LLSKLI--------------------------------GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTW 311 (414)
T ss_pred HHHHhc--------------------------------CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 222222 333332222222222111 111222233455555566666
Q ss_pred HHHHHHhhc-ccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHhh-hhhHHHHHHhh
Q 035624 330 IFVTTSAMR-IHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAM-ALALIMNA-KGIVEMAFYTF 403 (775)
Q Consensus 330 ifF~~~G~~-id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~-~lg~~l~~-rG~v~l~~~~~ 403 (775)
-..+-+|+. +|+ +.. -+| ..+++++..+++-.+++++..++.|+-+-|+- .-|+.|+. -|.-|+++.+.
T Consensus 312 ~lLvgiGv~~~~l~~l~~a---~t~--~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsA 386 (414)
T PF03390_consen 312 PLLVGIGVAYTDLNDLIAA---FTP--QYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSA 386 (414)
T ss_pred HHHHHHHhhhCcHHHHHHH---hCH--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheeh
Confidence 677777888 776 222 121 23455555667788889999999998776654 45544544 46667888887
Q ss_pred hccCCCCC
Q 035624 404 ASDGRYVP 411 (775)
Q Consensus 404 ~~~~~ii~ 411 (775)
+.+.+++.
T Consensus 387 a~RM~Lmp 394 (414)
T PF03390_consen 387 ANRMELMP 394 (414)
T ss_pred hhhccccc
Confidence 77777654
No 76
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.87 E-value=0.3 Score=57.58 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=62.9
Q ss_pred HHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHH
Q 035624 67 LKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILS 146 (775)
Q Consensus 67 l~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~ 146 (775)
.+.+|++.++|-.++|++++..- ++. +..+....+..+-+.+|....|+++|+..+.+++...+.+....
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~---~~~-------~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~ 312 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESE---LSH-------RAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAII 312 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCCh---hHH-------HHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 36788888888889998887543 221 11112223445556777888999999998876543332222222
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 035624 147 VISPLVALIPTFMVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 147 ~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~ 177 (775)
++.=++.++..+.+++.++..++.+|..++.
T Consensus 313 ~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~ 343 (558)
T PRK10669 313 VFGKSLAAFFLVRLFGHSRRTALTIAASLAQ 343 (558)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHhc
Confidence 2222334445556667778888888888875
No 77
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.69 E-value=0.33 Score=59.65 Aligned_cols=109 Identities=10% Similarity=0.130 Sum_probs=67.2
Q ss_pred HHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHH-HHHHHHHHHHHHhcccChHHHHhhhh--
Q 035624 61 QVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSM-GNIGIALFIFQSGVKMDLSMVSKVGR-- 137 (775)
Q Consensus 61 ~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l-~~igl~~llF~~Gle~d~~~lk~~~~-- 137 (775)
.+..++...+|+..++|-.++|+++...- ++. .-.+-++.+ ..+-+.+|+...|+++|+..+.....
T Consensus 282 l~~a~lae~~Gl~~ilGAFlaGl~lp~~~---~~~-------~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~ 351 (832)
T PLN03159 282 MISGFITDAIGTHSVFGAFVFGLVIPNGP---LGV-------TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWG 351 (832)
T ss_pred HHHHHHHHHhCccHHHHHHHHhhccCCcc---hHH-------HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHH
Confidence 34466667778888888888888876322 221 122333433 35566777888999999988753211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc
Q 035624 138 KALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS 179 (775)
Q Consensus 138 ~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts 179 (775)
....+.++.++.=++.+++.+++++.++..++.+|..++.-+
T Consensus 352 ~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG 393 (832)
T PLN03159 352 LLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKG 393 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 111222222222334455666777888889999999998754
No 78
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.54 E-value=0.12 Score=50.51 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred HhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHH---HHhhhhhHHHHHH
Q 035624 68 KRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSM---VSKVGRKALYIGI 144 (775)
Q Consensus 68 ~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~ 144 (775)
+++++-...|-+++|+++|-. +...+.. -.....+.+.++|+.+|++.+|++--++. +|+.+.+...+++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~-----~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~ 91 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL-----GRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGV 91 (169)
T ss_pred cceeccccHHHHHHHHHHHHh-----hhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445556666888888888853 2222111 13555677999999999999999988875 5667777777888
Q ss_pred HHHHHHHHHHHHHHH-hhcCChhHHHHHHH-HHhhccHHHHHHHHhh
Q 035624 145 LSVISPLVALIPTFM-VPTGTGPSGFFITP-LYYVTSFPVIFCLLTH 189 (775)
Q Consensus 145 ~~~l~p~~~~~~~~~-~l~~~~~~~l~ig~-~ls~Ts~~vv~~iL~e 189 (775)
.-.++|.++++.+++ +++.+ .....|. +-+.|++|.+....+.
T Consensus 92 ~i~~~~~~~~~~~~~~~~~l~--~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 92 IITLVPLLIALVIGRYLFKLN--PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHccccCcHHHHHHHHh
Confidence 888888888888887 55544 3334443 3467888887776554
No 79
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.53 E-value=0.43 Score=50.67 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchh-HHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHH
Q 035624 278 ILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGS-ALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQN 354 (775)
Q Consensus 278 ~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~-~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~ 354 (775)
+..+.+.+++.+ +++..+|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|+ +.+ .+ ...
T Consensus 3 ~a~~~~~l~~~l-~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~----~~-~~~ 74 (273)
T TIGR00932 3 AAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK----LR-KAA 74 (273)
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH----HH-HHH
Confidence 344567888999 9999999999999997531 110 111234444 456667788888999998 332 11 112
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhH
Q 035624 355 ILTVAWIVLVK-FGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIV 429 (775)
Q Consensus 355 ~~~~vv~~~~K-~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~ 429 (775)
..+....++.- +..++...++.+.++.+++.+|..+.+-. .-+.+.+..+.+..+.+.-..++..++++-.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~ 148 (273)
T TIGR00932 75 FGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAV 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHHHH
Confidence 22222333333 44445566778999999999999887654 234555566666666555444444444443333
No 80
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.46 E-value=0.4 Score=47.84 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcccChHHHHhhhhhHHHHH---HHHHHHHHHHHHHHH-HhhcCChhHHHHHHHHHhhccH-HHHHHHHh
Q 035624 114 IGIALFIFQSGVKMDLSMVSKVGRKALYIG---ILSVISPLVALIPTF-MVPTGTGPSGFFITPLYYVTSF-PVIFCLLT 188 (775)
Q Consensus 114 igl~~llF~~Gle~d~~~lk~~~~~~~~i~---~~~~l~p~~~~~~~~-~~l~~~~~~~l~ig~~ls~Ts~-~vv~~iL~ 188 (775)
+.+.+.||..|+++|++++++..|+...+. +..+++.-+++++++ .++..+ .....|..+...++ +..+....
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--~~~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--PALALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----HHHHHHHHHHHHS-B-THHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHhcCCcHHHHHHHH
Confidence 457789999999999999998876644322 233444444566666 344333 23344443322111 12222333
Q ss_pred hccccCChhHHHHHHHHHHHhHHHHHHHHHHHH
Q 035624 189 HLKILNSELGRLAQSSAIVADFLSYATVLLLTV 221 (775)
Q Consensus 189 el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~ 221 (775)
++ .+.+.. ++.+...++.+++.++.-+...
T Consensus 80 ~l--~~Gd~~-ls~~lt~istll~~~~~P~~~~ 109 (187)
T PF01758_consen 80 YL--AGGDVA-LSVSLTLISTLLAPFLMPLLLY 109 (187)
T ss_dssp HH--TT--HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--hCCCcc-cccceeeHHHHHHHHHHHHHHH
Confidence 32 233333 6666677777777776644443
No 81
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.62 Score=52.31 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHH-HHHHHHHHHHhcccChH
Q 035624 52 LLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGN-IGIALFIFQSGVKMDLS 130 (775)
Q Consensus 52 ~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~-igl~~llF~~Gle~d~~ 130 (775)
.+..++.+.....++.+.+|++.++|-.++|+++..+. .... +-++.++.+.+ +-+.++...+|+++|++
T Consensus 223 ~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~---~~~~------~l~~~i~~~~~~~fiplFFi~vG~~~dl~ 293 (397)
T COG0475 223 FILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESE---YRKH------ELEEKIEPFGDGLFIPLFFISVGMSLDLG 293 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccc---cchH------HHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence 34445566667788999999999999999999999865 2311 25677788888 88888999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 035624 131 MVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 131 ~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~ 177 (775)
.+.+++..+..+....++.=++.++..++.++.+...++..|..++.
T Consensus 294 ~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 294 VLLENLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhh
Confidence 99988877665555555555666667777777666666666666554
No 82
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.24 E-value=12 Score=46.92 Aligned_cols=133 Identities=8% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCCceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHcc
Q 035624 456 PESELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFG 535 (775)
Q Consensus 456 ~~~e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 535 (775)
.+-..++|+.+.+|+..+.+++++..+. | ...-..+.|+++-+.+... + +.++..++.+++-
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~--~-~~gl~i~~~v~~~~~~~~~-----~----------~~~~~~~~~~~~~ 633 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFT--K-GKGLMICGSVIQGPRLECV-----K----------EAQAAEAKIQTWL 633 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhc--c-CCcEEEEEEEecCchhhhH-----H----------HHHHHHHHHHHHH
Confidence 3555789999999999999999999997 3 3345667788874322110 0 0011112222222
Q ss_pred ccCCcceEEEEEEEEcCCCCcHHHHHHHHhh-----cCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEE
Q 035624 536 GLRWGAVSINTFTAISPLDLMHDDICTLALD-----KLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGI 610 (775)
Q Consensus 536 ~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e-----~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgi 610 (775)
++ . +++.|..+-.-.++.+++..+.+- -+.+.++|||...|+.++..+ .+ .+-+..+.. -.+...|.|
T Consensus 634 ~~--~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~-~~-~y~~~i~~a-~~~~~~v~i 706 (953)
T TIGR00930 634 EK--N--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRA-WE-TYIGIIHDA-FDAHLAVVV 706 (953)
T ss_pred HH--h--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchh-HH-HHHHHHHHH-HHcCCcEEE
Confidence 11 1 222222222346899999999875 568999999998887544211 11 133333332 355666666
Q ss_pred EEc
Q 035624 611 LID 613 (775)
Q Consensus 611 lvd 613 (775)
++.
T Consensus 707 ~r~ 709 (953)
T TIGR00930 707 VRN 709 (953)
T ss_pred Ecc
Confidence 653
No 83
>PRK03818 putative transporter; Validated
Probab=95.09 E-value=0.2 Score=58.62 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=72.2
Q ss_pred hHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHH---HHhhhhhHHHHHHHHHHHHH
Q 035624 75 FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSM---VSKVGRKALYIGILSVISPL 151 (775)
Q Consensus 75 iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~~~~l~p~ 151 (775)
+.|-+++|+++|-... .+|.. -.......+.++|+.+|+|.+|++.-++. +|+.+.+...+++.-.+++.
T Consensus 33 ~~g~L~~gl~~G~~~~-~~~~~------~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~ 105 (552)
T PRK03818 33 IGGVLFGGIIVGHFVS-QFGLT------LDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGG 105 (552)
T ss_pred cHHHHHHHHHHhcccc-ccCcc------cChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3788888888885210 01110 13556677899999999999999999986 45666667777777777888
Q ss_pred HHHHHHHHhhcCChhHHHHHHH-HHhhccHHHHHHHHh
Q 035624 152 VALIPTFMVPTGTGPSGFFITP-LYYVTSFPVIFCLLT 188 (775)
Q Consensus 152 ~~~~~~~~~l~~~~~~~l~ig~-~ls~Ts~~vv~~iL~ 188 (775)
++++++.++++.++. ...|. +-+.|++|.+....+
T Consensus 106 ~~~~~~~~~~~~~~~--~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 106 LVTAILHKLFGIPLP--VMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHHHhCCCHH--HHHHHhhccccccHHHHHHHH
Confidence 887777777766533 34443 346788888776554
No 84
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=94.90 E-value=1.8 Score=46.99 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHhhh-hhHHHHHHhhhccCCCCC
Q 035624 355 ILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALA-LIMNAK-GIVEMAFYTFASDGRYVP 411 (775)
Q Consensus 355 ~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg-~~l~~r-G~v~l~~~~~~~~~~ii~ 411 (775)
+++.+..+++-..+.++.+|+.|+-+-|+-..+ +.|+.+ |.-++++.+.+-+.++++
T Consensus 355 vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 355 VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 334444456777888999999998666655444 777666 455677777777766654
No 85
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.66 E-value=0.075 Score=45.58 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=40.3
Q ss_pred CcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhH-HHHHHHhccCCCceE
Q 035624 555 LMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVR-NLNLRILEKAPCSVG 609 (775)
Q Consensus 555 ~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~-~~~~kVl~~Apc~Vg 609 (775)
.+++.+.+.|++.++|.|++|.|+....+..+ .+ ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCcee
Confidence 88999999999999999999999876544333 33 567899999999974
No 86
>PRK10490 sensor protein KdpD; Provisional
Probab=94.62 E-value=0.096 Score=65.11 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=66.4
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC---CCeEEEEEeecChh
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT---ECMRYEKHVVENGA 707 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~v~y~e~~V~~g~ 707 (775)
..+|++...|+|..+..++.++|||+..++.++++|+.+++....++.+++...+.++ +..+ +.+......|. .
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~lGa~~~~~~~~dva--~ 326 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQELGAETATLSDPAEE--K 326 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCCHH--H
Confidence 4689999999999999999999999999999999999876433222333322222232 2222 22222333343 4
Q ss_pred hHHHHHHhcccCCcEEEEcccCC
Q 035624 708 DTVEIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 708 ~i~~~i~~~~~~~DLiivG~~~~ 730 (775)
.+.+++++ .+.+.|+||++++
T Consensus 327 ~i~~~A~~--~~vt~IViG~s~~ 347 (895)
T PRK10490 327 AVLRYARE--HNLGKIIIGRRAS 347 (895)
T ss_pred HHHHHHHH--hCCCEEEECCCCC
Confidence 48899998 8999999999975
No 87
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.42 E-value=8.9 Score=41.45 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=78.5
Q ss_pred HHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHH
Q 035624 66 VLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGIL 145 (775)
Q Consensus 66 ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~ 145 (775)
.....+.|..+--|+.|+++|... ..+...++...-.-+.+=++|++ +.|.+++++++.+.+.+.+.+-..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~-----~~~~~~~~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILP-----QIPAQTSAGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccc-----cchhhhccchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 345567899999999999999533 33221111122223445567777 568999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc
Q 035624 146 SVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS 179 (775)
Q Consensus 146 ~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts 179 (775)
.+..++++++.++.+++.++..++++|.--|...
T Consensus 102 ~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICG 135 (334)
T COG2855 102 TLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICG 135 (334)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhH
Confidence 9999999999999999999998888887665543
No 88
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.23 E-value=0.84 Score=53.83 Aligned_cols=125 Identities=12% Similarity=0.124 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchh--HHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhH
Q 035624 275 VILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGS--ALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIF 350 (775)
Q Consensus 275 ~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~--~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~ 350 (775)
++.+..++..++..+ |++.+++-.++|+++.....-.- .-.+-.+. ...+.++++....|+++|+ +.. .+
T Consensus 14 ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~~----~~ 87 (562)
T PRK05326 14 LLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFRP----AL 87 (562)
T ss_pred HHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHHH----HH
Confidence 344445556677888 99999999999999876421100 01122333 3678888889999999998 433 21
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCC
Q 035624 351 IVQNILTVAWIVLVKF-GTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGR 408 (775)
Q Consensus 351 ~~~~~~~~vv~~~~K~-l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ 408 (775)
.....+....++.-+ +.++...++.++++.+++.+|..+++-... ++..+..+.+
T Consensus 88 -~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~ 143 (562)
T PRK05326 88 -GPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKG 143 (562)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccC
Confidence 222333333333323 334455567899999999999887776543 3334444555
No 89
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.04 E-value=1.3 Score=47.64 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=89.5
Q ss_pred cchHHHHHHHHHhhccC-CCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHH
Q 035624 291 SELTVAGLYIVGLAVPR-GPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFG 367 (775)
Q Consensus 291 g~~~~lgaf~aGl~~~~-~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l 367 (775)
++++.+=|.+.|+++.| .....+...+-++.. ...++.+=.+..|.++++ +.+. .| . .+++.++.+..=+.
T Consensus 25 ~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~---G~-~-~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL---GW-K-GLLIIIIVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh---Cc-c-HHHHHHHHHHHHHH
Confidence 77888889999999998 544444444444433 457888889999999998 3331 21 1 12222233333444
Q ss_pred HHHHHH-HHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhH--HHHHHHHHHHHHhHHHHHHhhcCcccccc
Q 035624 368 TCSLLL-LYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMF--RFMLGIIIVMGSIVPIFVRKLYDPSRKYA 444 (775)
Q Consensus 368 ~~~l~~-~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~--~~lv~~~il~t~i~~~l~~~l~~~~~~~~ 444 (775)
.++..+ |.+|++++.+..+|...+.=|.-+++...-..+.+- ++..+ +.+.+.-.+..++-|.+.+++.-+...+-
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~~P~l~~~l~l~~~~~G 177 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFLYPLLGHALGLSPQQFG 177 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 444444 999999999999999888777766655554444431 11122 22233334445566777777765544443
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.79 E-value=0.42 Score=56.08 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred hhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHH---HHhhhhhHHHHHHH
Q 035624 69 RFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSM---VSKVGRKALYIGIL 145 (775)
Q Consensus 69 rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~~ 145 (775)
++.+-...|-+++|+++|- +|...|..+.-.......+.++|+.+|++.+|++--++. +++.+.+...+|..
T Consensus 412 p~~lg~~~g~l~~gl~~g~-----~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~ 486 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW-----LRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV 486 (562)
T ss_pred ceeehhhHHHHHHHHHHHH-----hcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 3444556788899999885 333333111113556667899999999999999988875 56666777777777
Q ss_pred HHHHHHHHHHHHHH-hhcCChhHHHHHHH-HHhhccHHHHHHHHhhc
Q 035624 146 SVISPLVALIPTFM-VPTGTGPSGFFITP-LYYVTSFPVIFCLLTHL 190 (775)
Q Consensus 146 ~~l~p~~~~~~~~~-~l~~~~~~~l~ig~-~ls~Ts~~vv~~iL~el 190 (775)
-.++|.++++.+++ +++.++ ....|. +-+.|++|.+....+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~--~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 487 VTILPLIITMLIGKYVLKYDP--ALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHhCCCH--HHHHHHhhccCCCcHHHHHHHHhc
Confidence 78888888888884 555543 344444 45788988887765443
No 91
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.59 E-value=0.58 Score=45.12 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=68.8
Q ss_pred ChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHH---hhh-hhHHHHHHHHHH
Q 035624 73 PIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVS---KVG-RKALYIGILSVI 148 (775)
Q Consensus 73 P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk---~~~-~~~~~i~~~~~l 148 (775)
-...|-+++|+++|- ++...|..+.-.......+.++|+.+|++.+|++--++.+. +.+ -....++..-.+
T Consensus 22 G~~~G~L~vgL~~G~-----~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~ 96 (154)
T TIGR01625 22 GNAGGVLFVGLLLGH-----FGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITV 96 (154)
T ss_pred cccHHHHHHHHHHHh-----ccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence 336788899999886 34433311111344667788999999999999999987654 333 123334444555
Q ss_pred HHHHHHHHHH-HhhcCChhHHHHHHHH-HhhccHHHHHHHHhhc
Q 035624 149 SPLVALIPTF-MVPTGTGPSGFFITPL-YYVTSFPVIFCLLTHL 190 (775)
Q Consensus 149 ~p~~~~~~~~-~~l~~~~~~~l~ig~~-ls~Ts~~vv~~iL~el 190 (775)
+|.+++..+. ++++.++ ....|.. -+.|++|.+....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 97 VPTLLVAVALIKLLRINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHhCCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 5555555555 3455443 3444443 4788888887765543
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.21 E-value=0.38 Score=57.01 Aligned_cols=128 Identities=14% Similarity=0.042 Sum_probs=84.6
Q ss_pred CCceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccc
Q 035624 457 ESELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGG 536 (775)
Q Consensus 457 ~~e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 536 (775)
....|||||++.......+++-+..++. +.....+++|+..-..+..+ + ..++-+..-.++++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~--~~~a~~~av~v~~~~~~~~~-----~----------~~~~~l~~~~~Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLAS--RLHAKWTAVYVETPELHRLS-----E----------KEARRLHENLRLAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHH--HhCCCeEEEEEecccccccc-----H----------HHHHHHHHHHHHHH
Confidence 4457999999999999999999988884 45577999998552222111 0 01122223333443
Q ss_pred cCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEc
Q 035624 537 LRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILID 613 (775)
Q Consensus 537 ~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvd 613 (775)
+-++ .+.+ .. -+++.+.|.++|.+.++.-||+|-+.++++...+ .+++.+++++.+| .+|-|+-.
T Consensus 309 ~lGa--e~~~--l~--~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~idv~ii~~ 374 (890)
T COG2205 309 ELGA--EIVT--LY--GGDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPGIDVHIVAL 374 (890)
T ss_pred HhCC--eEEE--Ee--CCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCCceEEEeeC
Confidence 3222 2222 22 2799999999999999999999987765432222 4778999999998 66655544
No 93
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.09 E-value=0.49 Score=55.56 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhh-----CCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccCh
Q 035624 55 TMFTISQVFHSVLKRF-----GIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDL 129 (775)
Q Consensus 55 lil~~~~~~~~ll~rl-----~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~ 129 (775)
+.++++..+++++-|+ ++-.+.|-+++|+++|-.. .. ++ +.+.++|+++|+|.+|++.-+
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g---~~-i~-----------~~v~~~gl~lFvy~vG~~~Gp 77 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLG---IQ-ID-----------PGVKAVFFALFIFAIGYEVGP 77 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcC---CC-CC-----------hHHHHHHHHHHHHHhhhccCH
Confidence 3344444555555554 4566788899999999644 22 11 136679999999999999999
Q ss_pred HHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH-HHhhccHHHHHH
Q 035624 130 SMVSKVGR---KALYIGILSVISPLVALIPTFMVPTGTGPSGFFITP-LYYVTSFPVIFC 185 (775)
Q Consensus 130 ~~lk~~~~---~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~-~ls~Ts~~vv~~ 185 (775)
+.++.-.| +-...++.-.+..+++.++++++++.+.. ...|+ +-+.|++|.+..
T Consensus 78 ~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~--~~~Gl~aGalT~tp~l~a 135 (562)
T TIGR03802 78 QFFASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKG--TAAGLAAGGLTQSAVIGT 135 (562)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhchhhccHHHHH
Confidence 88654444 44444544444555566666777776533 22222 224555555544
No 94
>PRK04972 putative transporter; Provisional
Probab=92.41 E-value=0.61 Score=54.71 Aligned_cols=104 Identities=22% Similarity=0.173 Sum_probs=72.1
Q ss_pred HhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHH---HHhhhhhHHHHHH
Q 035624 68 KRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSM---VSKVGRKALYIGI 144 (775)
Q Consensus 68 ~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~ 144 (775)
+.+++-...|-+++|+++|-.. ... + ..+.++|+.+|+|.+|++.-++. +|+.+.+...+++
T Consensus 33 ~~~~LG~~~g~L~vgl~~g~~~---~~~-~-----------~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~ 97 (558)
T PRK04972 33 GSIQLGNSIGVLVVSLLLGQQH---FSI-N-----------TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLAL 97 (558)
T ss_pred eeEecCcchHHHHHHHHHHhCC---CCC-C-----------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 4455666678999999998644 221 1 12457999999999999999876 4566666777777
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHH-HHhhccHHHHHHHHh
Q 035624 145 LSVISPLVALIPTFMVPTGTGPSGFFITP-LYYVTSFPVIFCLLT 188 (775)
Q Consensus 145 ~~~l~p~~~~~~~~~~l~~~~~~~l~ig~-~ls~Ts~~vv~~iL~ 188 (775)
.-.+++.++++.++++++.++. ...|+ +-+.|++|.+....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~--~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 98 VMVGSALVIALGLGKLFGWDIG--LTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH--HHHHHhhccccCcHHHHHHHH
Confidence 7777788888887877766543 33333 336677777776554
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.22 E-value=4.4 Score=39.20 Aligned_cols=120 Identities=16% Similarity=0.062 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHccch--HHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHH
Q 035624 276 ILILLLFLSFARKFYSEL--TVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFI 351 (775)
Q Consensus 276 l~~~l~~~~~a~~~~g~~--~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~ 351 (775)
+.+....+++.+.+ |+. .++|+++++.++.-.....-.+.+.+ ..+-.-+.=..+|.+++. +.+ ...+.
T Consensus 4 ~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~----~~~~qviiG~~iG~~f~~~~l~~--~~~~~ 76 (156)
T TIGR03082 4 LLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGGLEITLPPWL----LALAQVVIGILIGSRFTREVLAE--LKRLW 76 (156)
T ss_pred HHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCCccCCCCHHH----HHHHHHHHHHHHHccCCHHHHHH--HHHHH
Confidence 34445556677888 886 78898888887764321111122222 223334455678999887 333 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhc
Q 035624 352 VQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFAS 405 (775)
Q Consensus 352 ~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~ 405 (775)
...+...+..++.-++.+++..+..++++.+++ +| ..|-|.-++......+
T Consensus 77 ~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 77 PAALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 445555566666778888888999999999886 33 5798888887766544
No 96
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.15 E-value=1.7 Score=46.74 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=76.5
Q ss_pred HHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHH
Q 035624 285 FARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIV 362 (775)
Q Consensus 285 ~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~ 362 (775)
..+.. |.++..=|.+.|+++...++.+.+...-++. ....++.+=.+..|+++++ +.+. .+ -.+.+.+..+
T Consensus 31 ~~~~~-~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~---G~--~~v~~~~~~l 103 (334)
T COG2855 31 FSIHL-GLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADV---GG--SGVLIIAITL 103 (334)
T ss_pred Hhhhc-CchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHc---Cc--cHHHHHHHHH
Confidence 34445 6668888999999998665444444333443 3567788888899999998 3331 11 1234444445
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHh
Q 035624 363 LVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYT 402 (775)
Q Consensus 363 ~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~ 402 (775)
..-++.+++..+++|+|++.++.+|...+.=|.-+++...
T Consensus 104 ~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~ 143 (334)
T COG2855 104 SSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATA 143 (334)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhC
Confidence 5677778888889999999999999988777776555444
No 97
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=91.66 E-value=3.9 Score=49.31 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=43.7
Q ss_pred HhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-hcCChHHHHHHHHHHhhhhhH
Q 035624 324 SGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLL-Y-WKMHKNDAMALALIMNAKGIV 396 (775)
Q Consensus 324 ~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~-~-~~~~~~~~~~lg~~l~~rG~v 396 (775)
..+.+++-.+..|++++. +.. .|.. +..+.+.++..-.+++.+.++ + .+++|..++.+|.++.|-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr----~wrs-V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK----HWVS-VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH----hHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 567778888888999998 333 3322 222233333334444444444 3 499999999999999987754
No 98
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.55 E-value=0.6 Score=55.43 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=78.1
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC--CCe-EEEEEeecChh
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT--ECM-RYEKHVVENGA 707 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~v-~y~e~~V~~g~ 707 (775)
..+|++...|++....-++.|.|+|+..++..|++|+.+|+.....+.+++..++.++--+.- +.+ .|. ..|.+.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~-~dv~~~- 325 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYG-GDVAKA- 325 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeC-CcHHHH-
Confidence 358888888888999999999999999999999999999877655444444443333332221 333 343 344334
Q ss_pred hHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcC
Q 035624 708 DTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASK 758 (775)
Q Consensus 708 ~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~ 758 (775)
+.++++. .+.--|++|+++.. .|-+.-. |.+.|-|+..
T Consensus 326 -i~~ya~~--~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~ 363 (890)
T COG2205 326 -IARYARE--HNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE 363 (890)
T ss_pred -HHHHHHH--cCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc
Confidence 8899998 88999999999864 3533222 6666666655
No 99
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=90.75 E-value=2.9 Score=48.78 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchh-HHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHH
Q 035624 275 VILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGS-ALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFI 351 (775)
Q Consensus 275 ~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~-~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~ 351 (775)
.++.+.+...+++.+ ++++.++-.++|+++...+.... .+.. .....+++|......|+++|. +.. .|
T Consensus 6 l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~----~~- 76 (525)
T TIGR00831 6 LVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELRE----NF- 76 (525)
T ss_pred HHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHH----HH-
Confidence 334444455677777 88888888888888764311110 1111 122357888888899999998 433 22
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHH
Q 035624 352 VQNILTVAWIVLV-KFGTCSLLLLYWKMHKNDAMALALIMNAKGIVE 397 (775)
Q Consensus 352 ~~~~~~~vv~~~~-K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~ 397 (775)
..+..+.+..++. -.+.++...+..++|+..++.+|.++++...+.
T Consensus 77 ~~i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 77 RPIALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 2223333333333 333333444467999999999999999877654
No 100
>PRK04972 putative transporter; Provisional
Probab=90.54 E-value=1.4 Score=51.72 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHh-----hCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhccc
Q 035624 53 LATMFTISQVFHSVLKR-----FGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKM 127 (775)
Q Consensus 53 i~lil~~~~~~~~ll~r-----l~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~ 127 (775)
+++-++++.+++.+-=+ +++-.--|.+++|+++|- ++...|..+.-.......+.++|+.+|+..+|+.-
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~-----~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~a 460 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF-----LRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSA 460 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh-----ccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhh
Confidence 33444444444443333 233445678999999885 44544422212456677899999999999999988
Q ss_pred ChHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHH-HHHhhccHHHHHHHHhh
Q 035624 128 DLSM---VSKVGRKALYIGILSVISPLVALIPTFMV-PTGTGPSGFFIT-PLYYVTSFPVIFCLLTH 189 (775)
Q Consensus 128 d~~~---lk~~~~~~~~i~~~~~l~p~~~~~~~~~~-l~~~~~~~l~ig-~~ls~Ts~~vv~~iL~e 189 (775)
-.+. +++.+.+.+.+|..-.++|.++++.++++ ++.++. ..+| .+-+.|++|.+....+.
T Consensus 461 G~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 461 GSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 7765 45666777778888888888888888854 454433 4444 44577888887765543
No 101
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=90.42 E-value=29 Score=37.46 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHH------HHHHHHHHhc
Q 035624 52 LLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIG------IALFIFQSGV 125 (775)
Q Consensus 52 ~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~ig------l~~llF~~Gl 125 (775)
++..+.+-..+++.-.||-.=|.+.-.|=.|+++.+... .+..+..........+..+-+.| -.++.+-+|-
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~--~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGA 81 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPL--SGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGA 81 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCc--hhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhH
Confidence 344555555555666666667888888888888886541 12221100001122333333333 2355667888
Q ss_pred ccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHH
Q 035624 126 KMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSA 205 (775)
Q Consensus 126 e~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a 205 (775)
-+|+.-+-.+.|..+.-+..++-+ ..++..+.+++++..++-.+|.+-..=.+..+.- ..++.+.-+|-++++
T Consensus 82 mtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~---s~~LAp~LlgpIaVa-- 154 (360)
T PF03977_consen 82 MTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFTPKEAASIGIIGGADGPTSIFV---SSKLAPHLLGPIAVA-- 154 (360)
T ss_pred HHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHH---HHhhhHHHHHHHHHH--
Confidence 999999999988855433333321 2234455566777777777776665433222221 111111111211110
Q ss_pred HHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHc--CCCCcccch-HHHHHHHH
Q 035624 206 IVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLI----VRMT--PEGKEVSQT-GLYVVILI 278 (775)
Q Consensus 206 ~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l----~~~~--~~~~~~~e~-~~~~~l~~ 278 (775)
.-.+..++..+-+|+++.+ .|+. ++.++++.. -+.+.+..
T Consensus 155 ---------------------------------AYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv 201 (360)
T PF03977_consen 155 ---------------------------------AYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVV 201 (360)
T ss_pred ---------------------------------HHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHH
Confidence 0012223333444555443 2322 233344433 35555555
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHH
Q 035624 279 LLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNIL 356 (775)
Q Consensus 279 ~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~ 356 (775)
..+++.+.- .-.+++|.+.+|-.+.+.. ..+++.+-.+.-.....--+.=..+|...+- +.+ +++ + .++.
T Consensus 202 ~~~~~ll~P---~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~--~~t-l-~I~~ 273 (360)
T PF03977_consen 202 TILVGLLLP---SAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLN--PQT-L-KILV 273 (360)
T ss_pred HHHHHHHcc---chHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcC--HHH-H-HHHH
Confidence 555555543 3358899999999998873 3334433333322222222333466666664 333 444 2 2333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035624 357 TVAWIVLVKFGTCSLLLL 374 (775)
Q Consensus 357 ~~vv~~~~K~l~~~l~~~ 374 (775)
+-++++..--.++.+.++
T Consensus 274 LGl~Af~~~tagGvl~~k 291 (360)
T PF03977_consen 274 LGLVAFAFSTAGGVLFAK 291 (360)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 334444444444444444
No 102
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=90.42 E-value=9.4 Score=41.74 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=78.8
Q ss_pred cchHHHHHHHHHhhccCCC--CchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHH
Q 035624 291 SELTVAGLYIVGLAVPRGP--PLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKF 366 (775)
Q Consensus 291 g~~~~lgaf~aGl~~~~~~--~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~ 366 (775)
++++.+=|.+.|+++.|.. +..+....-++ +....++-+=.+..|+++++ +.. ..+ ..+.+.+..+..-+
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~---~G~--~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD---VGP--NEIVADTLILTSTF 103 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH---hhH--HHHHHHHHHHHHHH
Confidence 7788888999999998842 12222221122 33456667778888999998 332 122 12233333333344
Q ss_pred HH-HHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhh-H--HHHHHHHHHHHHhHHHHHHhh
Q 035624 367 GT-CSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNM-F--RFMLGIIIVMGSIVPIFVRKL 436 (775)
Q Consensus 367 l~-~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~-~--~~lv~~~il~t~i~~~l~~~l 436 (775)
.. .++..|.+|++++.+..+|...+.=|.-+++...-..+.+ +++. + +.+++.-.+..++-|++.+++
T Consensus 104 ~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 104 FLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 44 4455589999999999999888777776655544333332 1222 2 122333334445567666655
No 103
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.90 E-value=2.8 Score=40.52 Aligned_cols=101 Identities=7% Similarity=-0.003 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhCCC--hhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHH
Q 035624 55 TMFTISQVFHSVLKRFGIP--IFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMV 132 (775)
Q Consensus 55 lil~~~~~~~~ll~rl~~P--~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 132 (775)
+.+.++.+.+++++++|+| .++|-++++.++.- .|..+. +-+ ..+.+++.+++--.+|.+++.+.+
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~-----~~~~~~----~~P---~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL-----AGGLEI----TLP---PWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh-----cCCccC----CCC---HHHHHHHHHHHHHHHHccCCHHHH
Confidence 3456778889999999998 66677776666552 232110 112 245556777777899999999988
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH----HhhcCChhHH
Q 035624 133 SKVGRKALYIGILSVISPLVALIPTF----MVPTGTGPSG 168 (775)
Q Consensus 133 k~~~~~~~~i~~~~~l~p~~~~~~~~----~~l~~~~~~~ 168 (775)
++..+-.. ..+...+...+.+.+.+ ++.+.++..+
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta 108 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARLTGVDPLTA 108 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 76654433 23333334444444444 3444444444
No 104
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=89.81 E-value=35 Score=37.41 Aligned_cols=117 Identities=12% Similarity=0.014 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhhccCCCCchhHHHHhhhhh---hHhhhHHHHHHHHhhc-ccc--cCCCchhhHHHHHHHHHHHHHHH
Q 035624 291 SELTVAGLYIVGLAVPRGPPLGSALVNKFDCL---VSGFFLPIFVTTSAMR-IHD--LRPQSFNIFIVQNILTVAWIVLV 364 (775)
Q Consensus 291 g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~---~~~~f~PifF~~~G~~-id~--l~~~~~~~~~~~~~~~~vv~~~~ 364 (775)
++|+..-..++|.++....-..+++.++.+.. ...-+.+..++-+|+. +|+ +.+ .-+ +..+++++..+++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~--a~t--~~~vviiv~~Vlg 278 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVA--ALS--WQFVVICLSVVVA 278 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHH--Hhc--hhHhhhHHHHHHH
Confidence 57888888888888877654556666655543 2223333444445655 565 222 111 1245555666677
Q ss_pred HHHHHHHHHHHhcCChHHHHHH-HHHHhhh-hhHHHHHHhhhccCCCCC
Q 035624 365 KFGTCSLLLLYWKMHKNDAMAL-ALIMNAK-GIVEMAFYTFASDGRYVP 411 (775)
Q Consensus 365 K~l~~~l~~~~~~~~~~~~~~l-g~~l~~r-G~v~l~~~~~~~~~~ii~ 411 (775)
=.+++++.+|+.|+-+-|+-.. |+.|+.+ |.-|+++.+.+.+.+++.
T Consensus 279 ~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 279 MILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 8888999999999866665544 5455544 566778877777777654
No 105
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=89.62 E-value=10 Score=42.47 Aligned_cols=161 Identities=11% Similarity=0.138 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHh--hCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccC
Q 035624 51 LLLATMFTISQVFHSVLKR--FGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMD 128 (775)
Q Consensus 51 ~~i~lil~~~~~~~~ll~r--l~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d 128 (775)
..+.+...+++.+...++. +.+|..++.+++|+++.+.. ..... ..-..+.++.++++.+-+++-.+=..++
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~----~~~~~--~~~~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL----SFKKF--PWVAERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH----HHhCc--cccchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455555667777777765 67999999999999998753 22211 0013458999999999998888878999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCChhHHH----HHHHHHhhccHH--HHHHHHhhccccCChhHHHH
Q 035624 129 LSMVSKVGRKALYIGILSVISPLVALIPT-FMVPTGTGPSGF----FITPLYYVTSFP--VIFCLLTHLKILNSELGRLA 201 (775)
Q Consensus 129 ~~~lk~~~~~~~~i~~~~~l~p~~~~~~~-~~~l~~~~~~~l----~ig~~ls~Ts~~--vv~~iL~el~~~~s~~g~l~ 201 (775)
+..+.+.+-..+.+.+.+++...+....+ ...++.++..+. ..|..+..|+.+ -.-.+-+++|-.+...=-.=
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivP 375 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVP 375 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhh
Confidence 99999999999999999999888655444 455666665444 445555444433 33344455665443333333
Q ss_pred HHHHHHHhHHHHHHHH
Q 035624 202 QSSAIVADFLSYATVL 217 (775)
Q Consensus 202 ls~a~i~D~~~~i~l~ 217 (775)
+-.+.+.|+...+++.
T Consensus 376 lvgaf~id~~n~~~i~ 391 (398)
T TIGR00210 376 LVGAFFIDIINALVIK 391 (398)
T ss_pred hHHHHHHHHhhHHHHH
Confidence 4456777777665554
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=89.45 E-value=1.8 Score=48.52 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcccChHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHH-HhhccHHHHH--
Q 035624 113 NIGIALFIFQSGVKMDLSM---VSKVGRKALYIGILSVISPLVALIPTFMVPTG--TGPSGFFITPL-YYVTSFPVIF-- 184 (775)
Q Consensus 113 ~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~--~~~~~l~ig~~-ls~Ts~~vv~-- 184 (775)
++|+++|.+.+|+|--+.. +|+.+++-..++++-+ +.+..++|.++. .++..+..|.. -+.||.|...
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv----i~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa 137 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV----IAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAA 137 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHH
Confidence 8999999999999999875 5777777666655443 334444444432 23344444432 2456666655
Q ss_pred -HHHhhcccc
Q 035624 185 -CLLTHLKIL 193 (775)
Q Consensus 185 -~iL~el~~~ 193 (775)
.+|+|++..
T Consensus 138 ~~~L~~lg~~ 147 (544)
T COG2985 138 QDILRELGAP 147 (544)
T ss_pred HHHHHhhccc
Confidence 567777653
No 107
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=89.42 E-value=3 Score=44.68 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=64.1
Q ss_pred hHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 035624 75 FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVAL 154 (775)
Q Consensus 75 iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~ 154 (775)
.+--|+.|+++|+.. ... .+.++.=..+++.++.|..|.++|++.+.+.+.+.+.+++..+.+++.++
T Consensus 169 lilpILiGmilGNld----~~~--------~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~ 236 (312)
T PRK12460 169 ALLPLVLGMILGNLD----PDM--------RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN 236 (312)
T ss_pred HHHHHHHHHHHhccc----hhh--------HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 455577888888733 111 12222223347889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHH
Q 035624 155 IPTFMVPTGTGPSGFFIT 172 (775)
Q Consensus 155 ~~~~~~l~~~~~~~l~ig 172 (775)
+.+..+++.+...+.+++
T Consensus 237 ~~i~rllg~~~~~g~li~ 254 (312)
T PRK12460 237 IFADRLVGGTGIAGAAAS 254 (312)
T ss_pred HHHHHHhCCChhHHHHHH
Confidence 999888876666666555
No 108
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.65 E-value=9.5 Score=41.46 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred HhhCCChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHH
Q 035624 68 KRFGIPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILS 146 (775)
Q Consensus 68 ~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~ 146 (775)
|-++-|.+++. +.|+++... |.. .| .-.+.++.+++....+-||..|+.++.+.+++.++........-
T Consensus 178 ~~~~nP~iia~-i~Gl~~~~~-----~i~----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~k 247 (321)
T TIGR00946 178 KLIKFPPLWAP-LLSVILSLV-----GFK----MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVR 247 (321)
T ss_pred HHHhCCChHHH-HHHHHHHHH-----hhc----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHH
Confidence 33578888875 566776643 331 12 35778899999999999999999999988887777777666666
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhh-ccccCChhHHHHHHHHHHHhHHHHHHH
Q 035624 147 VISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTH-LKILNSELGRLAQSSAIVADFLSYATV 216 (775)
Q Consensus 147 ~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~e-l~~~~s~~g~l~ls~a~i~D~~~~i~l 216 (775)
.++--++.+.++..++.+. ...-...+.+...+++...++.+ +| .+ .+.+-+...++-+++.+.+
T Consensus 248 lil~P~i~~~~~~~~~l~~-~~~~~~vl~aa~P~a~~~~i~A~~y~-~~---~~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 248 FLVQPAVMAGISKLIGLRG-LELSVAILQAALPGGAVAAVLATEYE-VD---VELASTAVTLSTVLSLISL 313 (321)
T ss_pred HHHHHHHHHHHHHHhCCCh-HHHHHHHHHHcCChhhHHHHHHHHhC-CC---HHHHHHHHHHHHHHHHHHH
Confidence 6544444455566665432 22333444444444555555543 33 22 2344444444444444444
No 109
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.01 E-value=34 Score=35.00 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHh
Q 035624 349 IFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSI 428 (775)
Q Consensus 349 ~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i 428 (775)
.| ..+..-++++.+.-++.+++.+++++.+..-. ..+.||....-+...+..+.|.+++-+-..++++-++...+
T Consensus 89 ~w-~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~----~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavl 163 (230)
T COG1346 89 HW-KPILAGVLVGSVVAIISGVLLAKLFGLSPELI----LSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVL 163 (230)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----HHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 55 34555555666777888888899999887532 24789999998888999999988776666666667777777
Q ss_pred HHHHHHhh
Q 035624 429 VPIFVRKL 436 (775)
Q Consensus 429 ~~~l~~~l 436 (775)
++++.|++
T Consensus 164 g~~llk~~ 171 (230)
T COG1346 164 GPLLLKLL 171 (230)
T ss_pred HHHHHHHh
Confidence 88888876
No 110
>PRK03818 putative transporter; Validated
Probab=87.95 E-value=10 Score=44.58 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=73.2
Q ss_pred hHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHh----hhhhHHHHHHHHHHHH
Q 035624 75 FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSK----VGRKALYIGILSVISP 150 (775)
Q Consensus 75 iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~----~~~~~~~i~~~~~l~p 150 (775)
--|.+++|+++|- ++...|..+.-.......+.++|+.+|+..+|++--++.+.. .+.+...+|..-.++|
T Consensus 403 ~~G~L~~gl~~g~-----~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGR-----IGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHh-----ccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4578999999885 334333111113556678899999999999999988876543 4566677788888888
Q ss_pred HHHHHHHHH-hhcCChhHHHHHH-HHHhhccHHHHHHHH
Q 035624 151 LVALIPTFM-VPTGTGPSGFFIT-PLYYVTSFPVIFCLL 187 (775)
Q Consensus 151 ~~~~~~~~~-~l~~~~~~~l~ig-~~ls~Ts~~vv~~iL 187 (775)
.++++.+++ +++.++ ...+| .+-+.|++|.+....
T Consensus 478 ~~~~~~~~~~~~~~~~--~~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 478 LLIVGILARMLAKMNY--LTLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHhccCCCcHHHHHHh
Confidence 888888864 455543 34444 445788888876653
No 111
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=87.30 E-value=5.8 Score=43.17 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC--hhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhccc
Q 035624 50 MLLLATMFTISQVFHSVLKRFGIP--IFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKM 127 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~~P--~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~ 127 (775)
..++.+++..+...+++.+|+|+| .++|-++++.++.-.. ..+. .-+..+ ..++.+++=-.+|.++
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~-----~~~~----~~P~~l---~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG-----GPSF----SLPPWL---VNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-----CCCC----CCCHHH---HHHHHHHHHHHHHccc
Confidence 345666777788899999999986 4666666666655332 2111 123344 4455556668999999
Q ss_pred ChHHHHhhhhh
Q 035624 128 DLSMVSKVGRK 138 (775)
Q Consensus 128 d~~~lk~~~~~ 138 (775)
+.+.+|+..|.
T Consensus 222 ~~~~l~~~~~~ 232 (318)
T PF05145_consen 222 TRETLRELRRL 232 (318)
T ss_pred cHHHHHHHHHH
Confidence 99998776544
No 112
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=85.62 E-value=3.6 Score=40.87 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=57.2
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEE-------EEeecC
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYE-------KHVVEN 705 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~-------e~~V~~ 705 (775)
+|++.+.||.|.--++.++++.++..+.+++++++...-.. .++.+.+..+++.+++... ...+. +..-.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~-~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~ 78 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP-ESDEEAEFVQQFCKKLNIP-LEIKKVDVKALAKGKKKN 78 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh-hHHHHHHHHHHHHHHcCCC-EEEEEecchhhccccCCC
Confidence 58899999999999999999998888888999998643211 1122233334444444322 11111 000000
Q ss_pred hh---------hHHHHHHhcccCCcEEEEcccCCC
Q 035624 706 GA---------DTVEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 706 g~---------~i~~~i~~~~~~~DLiivG~~~~~ 731 (775)
-. -+.+.+++ .++|.++.|.|.+.
T Consensus 79 ~~~~~r~~R~~~l~~~a~~--~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 79 LEEAAREARYDFFEEIAKK--HGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCEEEEcCccHH
Confidence 11 12334444 67999999999764
No 113
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.51 E-value=7.7 Score=38.56 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC---CChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHH-------H
Q 035624 50 MLLLATMFTISQVFHSVLKRFG---IPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIA-------L 118 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~---~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~-------~ 118 (775)
+..+.++-++.++-+++.||+. ++.----|+.|+++.... |.... . +....+..++.+|++ |
T Consensus 15 i~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g----G~~Tg---G~kGlaDi~lfsGiglmGGaMlRDf 87 (254)
T TIGR00808 15 ITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG----GVYTG---GEKGLADIAIFGGFGLMGGAMLRDL 87 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc----ccccC---CccccchhhhhcchhhhhhHHHHHH
Confidence 4444555555666667777764 555445567777776432 22110 0 122223333333332 1
Q ss_pred HHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 035624 119 FIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGP 166 (775)
Q Consensus 119 llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~ 166 (775)
-.-.-..|.|.+++||.+..-..--+.+.++||+.|..+++.+++.-+
T Consensus 88 AIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~Da 135 (254)
T TIGR00808 88 AIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRDA 135 (254)
T ss_pred HHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 123455699999999999887777788999999999999999987654
No 114
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=85.51 E-value=8.5 Score=42.77 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHh--hCCChhHHHHhhhceeccccchhcccccc-ccCcccHHHHHHHHHHHHHHHHHHHhcccC
Q 035624 52 LLATMFTISQVFHSVLKR--FGIPIFISQIFVSILTFDDFFLVIKMENK-IITPEHVQLIGSMGNIGIALFIFQSGVKMD 128 (775)
Q Consensus 52 ~i~lil~~~~~~~~ll~r--l~~P~iv~~IlaGillGP~~~~~lg~~~~-~~f~~~~~~l~~l~~igl~~llF~~Gle~d 128 (775)
.+.+...++..+..+++. +.+|..++.+++|+++.... ..... . -+.+.++.++++.+-+++..+=..++
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~----~~~~~~~---id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL----DKTGKYK---IDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH----HHhCccc---CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555553 56899999999999998643 22211 1 25677889999999999888888999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHhhcCChhHHH
Q 035624 129 LSMVSKVGRKALYIGILSVISPLVALIP-TFMVPTGTGPSGF 169 (775)
Q Consensus 129 ~~~lk~~~~~~~~i~~~~~l~p~~~~~~-~~~~l~~~~~~~l 169 (775)
+..+.+..-..+.+-+.+.++..+.... ....++.++..+.
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdydaav 339 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYDAAV 339 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHH
Confidence 9999999888887777777776665544 4557777776443
No 115
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=85.24 E-value=2 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.1
Q ss_pred EEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEee
Q 035624 634 VALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFI 668 (775)
Q Consensus 634 i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~ 668 (775)
|++++.||+|+..++.++++.+ ..+.+++.++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 4788999999999999999987 557788888875
No 116
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=85.22 E-value=63 Score=35.39 Aligned_cols=273 Identities=11% Similarity=0.058 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhcc-----c-----cccccC-c------ccHHHHHHHHH
Q 035624 51 LLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIK-----M-----ENKIIT-P------EHVQLIGSMGN 113 (775)
Q Consensus 51 ~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg-----~-----~~~~~f-~------~~~~~l~~l~~ 113 (775)
-++..+++-..+++.-.+|-.=|.+.-.|=.|.++.+.. +. . .++... | .+...+..+-+
T Consensus 23 ~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~ 99 (399)
T TIGR03136 23 TRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAG---VMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYN 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCc---cccccccccccccccccccccchhccccCCcHHHHHHH
Confidence 344444444445555555555677777777787777543 21 0 011000 0 01133333333
Q ss_pred HHH------HHHHHHHhcccChHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHH
Q 035624 114 IGI------ALFIFQSGVKMDLSMVSKVGRKALYIG-ILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCL 186 (775)
Q Consensus 114 igl------~~llF~~Gle~d~~~lk~~~~~~~~i~-~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~i 186 (775)
.|+ .++.+-+|.-+|+.-+-.+.|..+..| ..++-+ ..++..+..++++..++-.+|++-..-.+..+.-
T Consensus 100 ~gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~Gi--F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~- 176 (399)
T TIGR03136 100 FTFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGT--FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA- 176 (399)
T ss_pred HHHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhH--HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH-
Confidence 332 345566788999999999988877633 333221 1222344456777777777776665433222221
Q ss_pred HhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c-
Q 035624 187 LTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRM----T- 261 (775)
Q Consensus 187 L~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~----~- 261 (775)
..++.+.-+|-++++ .-.+..++..+-+|+++++..+ .
T Consensus 177 --s~kLAp~Llg~IaVA-----------------------------------AYsYMaLVPiiqPpimklLttkkER~I~ 219 (399)
T TIGR03136 177 --SLILAKDLFVPISII-----------------------------------AYLYLSLTYAGYPYLIKLLVPKKYRGLE 219 (399)
T ss_pred --HHhhhhHhHHHHHHH-----------------------------------HHHHHHHHhcccchHHHhhcCHHHHccc
Confidence 112211112211111 0012223334445555554322 1
Q ss_pred -C-CCCcccch-HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhc
Q 035624 262 -P-EGKEVSQT-GLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMR 338 (775)
Q Consensus 262 -~-~~~~~~e~-~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~ 338 (775)
+ +.+++++. -+.+.+.+..+++.+.- .-.+++|.+.+|-.+.+.. . +++.+..+.......--+.=..+|..
T Consensus 220 M~~~~r~VSk~eKilFpivv~i~~~ll~P---~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG~t 294 (399)
T TIGR03136 220 VEMEFPDVSQRAKFVFTIVAAMLLCLLLP---VASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLGVL 294 (399)
T ss_pred CccCCCCCCccchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 22233322 35555555555555543 2348999999999998874 3 55555444433333333334466666
Q ss_pred ccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 339 IHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 339 id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
.+- +.+ +++ + .++.+-++++..--.++.+.+++
T Consensus 295 ~~A~~FL~--~~t-l-~Il~LGlvAF~~~tagGvl~aK~ 329 (399)
T TIGR03136 295 CEASTLLD--PRV-S-ILLVLGITALLISGIGGVLGGWF 329 (399)
T ss_pred ccHHhhCC--hHH-H-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 664 333 444 2 23344444444444444444443
No 117
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=84.62 E-value=51 Score=33.83 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=50.5
Q ss_pred EEEEEEEcCCC-CcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCC
Q 035624 544 INTFTAISPLD-LMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHG 615 (775)
Q Consensus 544 v~~~~~vs~~~-~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~ 615 (775)
..++|-++|.+ ...++|.+.+.+-.+|.|++| |+.+. +......+.+++-++.+.||.++....
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--GS~gv------t~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--GSDGV------TEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--Ccccc------cHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 36677899988 899999999999999999999 33322 122377888888889999988886554
No 118
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=84.47 E-value=4.3 Score=43.56 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=67.3
Q ss_pred hHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHH
Q 035624 323 VSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMA 399 (775)
Q Consensus 323 ~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~ 399 (775)
.++++=|+.|.-+|..+|+ +.+ ++. .++-..+-++- ..+++.+...|++.+|+-.+|.+=..-|-.++.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan--P~~-----~llGaaAQ~Gi-f~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf 138 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN--PKT-----LLLGAAAQFGI-FATFLGAILLGFTPKEAASIGIIGGADGPTSIF 138 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC--HHH-----HHHHHHHHHhH-HHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHH
Confidence 3578889999999999998 544 422 12222222332 334555677799999999999877777877776
Q ss_pred HHhhhccCCCC---ChhhHHHHHHHHHHHHHhHHHHHHhhcCccccc
Q 035624 400 FYTFASDGRYV---PPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRKY 443 (775)
Q Consensus 400 ~~~~~~~~~ii---~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~~ 443 (775)
+.+..- -+++ .-..|+-+ .+.=++.||+.|.+-.+++|.
T Consensus 139 ~s~~LA-p~LlgpIaVaAYsYM----aLvPiiqPpimklLttkkeR~ 180 (360)
T PF03977_consen 139 VSSKLA-PHLLGPIAVAAYSYM----ALVPIIQPPIMKLLTTKKERK 180 (360)
T ss_pred HHHhhh-HHHHHHHHHHHHHHH----HHHhhhhhHHHHHhcCHHHHh
Confidence 665432 1122 22223322 233456899999987654443
No 119
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=84.29 E-value=10 Score=41.77 Aligned_cols=116 Identities=16% Similarity=0.299 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hCCChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHHHHHHHHh
Q 035624 48 RIMLLLATMFTISQVFHSVLKR--FGIPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIALFIFQSG 124 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~r--l~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~~llF~~G 124 (775)
..+.-+++.+.++..+..+++. +.+|..+..+.+|+++.... ...+. + -..+.++.+++.++-+++=.+=
T Consensus 222 ~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~~~~~---~~v~~~~v~~ig~vsL~lflamAL 294 (404)
T COG0786 222 ETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----DLLKK---YRVFRRAVDVIGNVSLSLFLAMAL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----HHhcc---ccccHHHHHHHhhhHHHHHHHHHH
Confidence 3344555556666677777765 45899999999999998642 22221 1 2567788899999998887776
Q ss_pred cccChHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCChhHHHH
Q 035624 125 VKMDLSMVSKVGRKALYIGILSVISPLVALIPT-FMVPTGTGPSGFF 170 (775)
Q Consensus 125 le~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~-~~~l~~~~~~~l~ 170 (775)
+.+.+..+-.-+-..+.+-..+.+...+..+.+ ...++.++.++..
T Consensus 295 mSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 295 MSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 788887887777776666666666655544444 4567777765444
No 120
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=84.15 E-value=3.1 Score=44.76 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=58.7
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeE-EEEEeecCh---
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMR-YEKHVVENG--- 706 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~-y~e~~V~~g--- 706 (775)
..++++.|.||+|+--.|.++++.....+..+.++++.+...+. +..+.-+++.+++..+ .+. ..+..+..|
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~Fp---Et~ef~d~~a~~~gl~-l~v~~~~~~i~~g~~~ 102 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFP---EMIEFRDRRAKELGLE-LIVHSNPEGIARGINP 102 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCH---HHHHHHHHHHHHhCCC-EEEEeChHHHhcCCCC
Confidence 35889999999999999999988655446678899988765543 2223333444444332 111 111111111
Q ss_pred --------------hhHHHHHHhcccCCcEEEEcccCCC
Q 035624 707 --------------ADTVEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 707 --------------~~i~~~i~~~~~~~DLiivG~~~~~ 731 (775)
....+++++ .++|.++.|.|.+.
T Consensus 103 ~~~~~~~cC~~lK~~pL~~al~e--~g~da~~~G~RrDE 139 (301)
T PRK05253 103 FRHGSAKHTNAMKTEGLKQALEK--YGFDAAFGGARRDE 139 (301)
T ss_pred CCCChHHHHHHHHHHHHHHHHHH--cCCCEEEeccccch
Confidence 123344555 67999999999875
No 121
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=83.33 E-value=4.4 Score=39.95 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=56.6
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeE--EEEEeecCh----
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMR--YEKHVVENG---- 706 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~--y~e~~V~~g---- 706 (775)
+|++.+.||.|.--++.++++...+.+.+++++++.+..... ..++.+..+++.+.+..+-.+. +.......+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPE-SDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCch-HHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 578999999999999999999988778889999986542211 1122333333444433221111 111111111
Q ss_pred ------hhHHHHHHhcccCCcEEEEcccCCC
Q 035624 707 ------ADTVEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 707 ------~~i~~~i~~~~~~~DLiivG~~~~~ 731 (775)
....+++++ .++|.++.|.|.+.
T Consensus 80 ~r~~r~~~l~~~a~~--~~~~~i~~Gh~~dD 108 (185)
T cd01992 80 AREARYDFFAEIAKE--HGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEcCCcHH
Confidence 112234444 67999999998753
No 122
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=83.13 E-value=3.4 Score=40.96 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=32.6
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
+|++.+-||+|.--.+.+..++.+..+.+++++++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 58899999999999999999999999999999999864
No 123
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=80.46 E-value=75 Score=32.80 Aligned_cols=81 Identities=5% Similarity=-0.078 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHH
Q 035624 352 VQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPI 431 (775)
Q Consensus 352 ~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~ 431 (775)
..+.+-++++.+.-+.+++..+++++.+.. +...|.||....=+...++.+.|.+.+-.-..++++-++-.+++++
T Consensus 94 ~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~ 169 (232)
T PRK04288 94 WQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAK 169 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666777788888899888774 2235789999888888888888877655555555666666667777
Q ss_pred HHHhh
Q 035624 432 FVRKL 436 (775)
Q Consensus 432 l~~~l 436 (775)
+.|++
T Consensus 170 llk~~ 174 (232)
T PRK04288 170 FLKLF 174 (232)
T ss_pred HHHHc
Confidence 77775
No 124
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=80.46 E-value=90 Score=33.72 Aligned_cols=82 Identities=10% Similarity=0.015 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHH------HHHHHHHHhcccChH
Q 035624 57 FTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIG------IALFIFQSGVKMDLS 130 (775)
Q Consensus 57 l~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~ig------l~~llF~~Gle~d~~ 130 (775)
++-..+++.-.+|-.=|.+.-.|=.|+++.+....-+|..+ ....+..+-+.| -.++.+-+|.-+|+.
T Consensus 7 ~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~------~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFg 80 (354)
T TIGR01109 7 LVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTA------EGGILALFYKVGIGSGIAPLLIFMGIGALTDFG 80 (354)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcccccccc------CCchHHHHHHHHHhcchHHHHHHHhccHHhhhH
Confidence 33333444444555567777777777777754300012211 112233222222 234556678899999
Q ss_pred HHHhhhhhHHHHHH
Q 035624 131 MVSKVGRKALYIGI 144 (775)
Q Consensus 131 ~lk~~~~~~~~i~~ 144 (775)
-+-.+.+..+.-+.
T Consensus 81 pllanP~~~llGaa 94 (354)
T TIGR01109 81 PLLANPRTLLLGAA 94 (354)
T ss_pred HHHhChHHHHHHHH
Confidence 99888875444333
No 125
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=79.75 E-value=26 Score=38.23 Aligned_cols=110 Identities=10% Similarity=0.047 Sum_probs=67.4
Q ss_pred hhHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHH
Q 035624 322 LVSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEM 398 (775)
Q Consensus 322 ~~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l 398 (775)
+.++++=|+.|.-+|..+|+ +.+ ++.. . +.-..+=++-| .+++.+...|++.+|+-.+|.+=..-|-.++
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllan--P~~~-l---l~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaI 174 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILAR--PWAS-I---TVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVL 174 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhC--hHHH-H---HHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHH
Confidence 44678889999999999998 544 4331 1 11122223322 3345556779999999999987777787777
Q ss_pred HHHhhhccCCCCC---hhhHHHHHHHHHHHHHhHHHHHHhhcCccccc
Q 035624 399 AFYTFASDGRYVP---PNMFRFMLGIIIVMGSIVPIFVRKLYDPSRKY 443 (775)
Q Consensus 399 ~~~~~~~~~~ii~---~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~~ 443 (775)
.+.+... -+++. -..|+-+ .+.=++-||+.|.+-.+++|.
T Consensus 175 f~s~kLA-p~Llg~IaVAAYsYM----aLVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 175 FASLILA-KDLFVPISIIAYLYL----SLTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred HHHHhhh-hHhHHHHHHHHHHHH----HHHhcccchHHHhhcCHHHHc
Confidence 6655432 12222 2233332 233456899999987655443
No 126
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=79.69 E-value=14 Score=36.93 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHh
Q 035624 353 QNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYT 402 (775)
Q Consensus 353 ~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~ 402 (775)
..+.+-+..+++-++++++.+++.++|++|++.++..++--..-...+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 35566667778999999999999999999999999887766555555544
No 127
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.44 E-value=0.6 Score=51.98 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHH-HHHHHHHHHHHhcccC
Q 035624 50 MLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMG-NIGIALFIFQSGVKMD 128 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~-~igl~~llF~~Gle~d 128 (775)
..++...+.+......+.+.+|.+.+++-.++|++++... .+. +-.+.++.+. .+...+++...|+++|
T Consensus 212 ~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~---~~~-------~~~~~l~~~~~~~~~~lfF~~iG~~~~ 281 (380)
T PF00999_consen 212 EIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSP---FAE-------RLEEKLESFWYGFFIPLFFVFIGMSLD 281 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHhhhccccccccccccceeeeeehcccccc---ccc-------hhhhcccchhhHHHhhHHhhhhccccc
Confidence 3444445555555588889999999999999999998433 111 1233345555 6677788889999999
Q ss_pred hHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh
Q 035624 129 LSMVS---KVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYY 176 (775)
Q Consensus 129 ~~~lk---~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls 176 (775)
++.+. ........+.+...+.=++.+....+..+.++..+..+|..+.
T Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (380)
T PF00999_consen 282 FSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGML 332 (380)
T ss_dssp -----------------------------------------HHHHTTTTSS
T ss_pred ccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhhc
Confidence 98873 3333333322222222233334444444555666666665444
No 128
>PRK10711 hypothetical protein; Provisional
Probab=79.03 E-value=73 Score=32.90 Aligned_cols=79 Identities=10% Similarity=-0.034 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 035624 354 NILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFV 433 (775)
Q Consensus 354 ~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~ 433 (775)
+.+-+.++.+.-++.+++.++.++.+..-. ..|.||....=+...+..+.|.+.+-.-..++++-++-.+++|++.
T Consensus 91 I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 91 IISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566667778888889988876533 2478999988888888888877654444444555555566677777
Q ss_pred Hhh
Q 035624 434 RKL 436 (775)
Q Consensus 434 ~~l 436 (775)
|++
T Consensus 167 k~~ 169 (231)
T PRK10711 167 NAM 169 (231)
T ss_pred HHc
Confidence 765
No 129
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=78.99 E-value=6.8 Score=38.49 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=32.4
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCC--CeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDN--KVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~--~~~ltvl~~~~~ 670 (775)
+|++.+-||.|.--++.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 57899999999999999998887765 788999998754
No 130
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=78.56 E-value=19 Score=39.39 Aligned_cols=120 Identities=11% Similarity=-0.101 Sum_probs=66.7
Q ss_pred CCCCCccchHHHHHH-HHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHH
Q 035624 38 EYKWLDYTTPRIMLL-LATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGI 116 (775)
Q Consensus 38 ~~~pl~~~~~~~l~~-i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl 116 (775)
++.|-.-+++....+ +.+.+.++.+.+.+.|++|+|.- ++++.++++-.. |..+.++. +-+.+ +..++.
T Consensus 174 ~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v-~~~~~~~~----~lP~w---l~~va~ 243 (352)
T COG3180 174 GSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIV-HFGGGITI----QLPAW---LLAVAQ 243 (352)
T ss_pred CCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHh-hcccceee----eCCHH---HHHHHH
Confidence 444333344444444 67777778888999999999863 355555554322 11221110 22333 335677
Q ss_pred HHHHHHHhcccChHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHhhcCChhH
Q 035624 117 ALFIFQSGVKMDLSMVSKVGRKALYIGI---LSVISPLVALIPTFMVPTGTGPS 167 (775)
Q Consensus 117 ~~llF~~Gle~d~~~lk~~~~~~~~i~~---~~~l~p~~~~~~~~~~l~~~~~~ 167 (775)
.++--.+|.++|-..+++..|....+-+ ..+++...++.+++++.+.++..
T Consensus 244 ~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~t 297 (352)
T COG3180 244 ALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNT 297 (352)
T ss_pred HHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7788899999999998776665433222 22233333444444444554443
No 131
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=77.66 E-value=48 Score=37.67 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhhhhhHHH
Q 035624 325 GFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW--KMHKNDAMALALIMNAKGIVEM 398 (775)
Q Consensus 325 ~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~--~~~~~~~~~lg~~l~~rG~v~l 398 (775)
.+++|+.....|+++|. +.. .| ..+..+.....+...++..+..++. ++|+..++.+|.+++|-.-+.+
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~----~~-~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR----VW-RSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 57777777788999998 433 22 2233333344444555555555554 8899999999999988776544
No 132
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=76.63 E-value=7.7 Score=41.57 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=56.5
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeE-EEEEee-------
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMR-YEKHVV------- 703 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~-y~e~~V------- 703 (775)
.+.++.|.||+|+--.|.++++.....+..+.++++.+--+|.+ ..+.-+++.+++..+ .+. ..+...
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~E---t~efrd~~a~~~gl~-l~v~~~~~~~~~g~~~~ 95 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFRE---MIAFRDHMVAKYGLR-LIVHSNEEGIADGINPF 95 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHH---HHHHHHHHHHHhCCC-EEEEechhhhhcCcccc
Confidence 45678899999999999999988654467789999977544431 222233333433322 111 121111
Q ss_pred cChhh----------HHHHHHhcccCCcEEEEcccCCCC
Q 035624 704 ENGAD----------TVEIVHSMVNQYDLIIVGRRHNLE 732 (775)
Q Consensus 704 ~~g~~----------i~~~i~~~~~~~DLiivG~~~~~~ 732 (775)
+.+.+ ..+++++ .++|.++.|.+.+.+
T Consensus 96 ~~~~~~~c~vlK~~pL~~al~e--~g~da~itG~RRDEe 132 (294)
T TIGR02039 96 TEGSALHTDIMKTEALRQALDK--NQFDAAFGGARRDEE 132 (294)
T ss_pred ccChHHHhhHHHHHHHHHHHHH--cCCCEEEecCChhhh
Confidence 11111 3334444 679999999998654
No 133
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=76.36 E-value=1.1e+02 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=26.9
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhCCC-------hhHHHHhhhceec
Q 035624 38 EYKWLDYTTPRIMLLLATMFTISQVFHSVLKRFGIP-------IFISQIFVSILTF 86 (775)
Q Consensus 38 ~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P-------~iv~~IlaGillG 86 (775)
|.||.+ + +....+..+......+++||++++ ..+.+|+.|-.+.
T Consensus 19 GYn~Vn-t----~~YaiiL~~~v~~v~~ll~~l~i~id~~f~~al~P~m~~G~~lR 69 (273)
T PF01889_consen 19 GYNPVN-T----LTYAIILGVAVIGVYKLLKRLRIKIDERFVLALIPFMLFGGALR 69 (273)
T ss_pred CCcHHH-H----HHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhhHHHHHHHHH
Confidence 677776 2 223333334444567799998876 4666777775554
No 134
>COG2431 Predicted membrane protein [Function unknown]
Probab=75.28 E-value=9.6 Score=39.84 Aligned_cols=89 Identities=10% Similarity=0.192 Sum_probs=57.1
Q ss_pred hhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccC---hH--HHHhhhhhHHHHHHHHHH
Q 035624 74 IFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMD---LS--MVSKVGRKALYIGILSVI 148 (775)
Q Consensus 74 ~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d---~~--~lk~~~~~~~~i~~~~~l 148 (775)
.+.+..+.|+++|-.. |.. ....+..++..+.+++|.+|.++. .. ..+ --|+.+..++...+
T Consensus 108 k~~~~vl~g~~~G~l~----~~~--------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~-Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLT----GSF--------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVL-LNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHh----ccc--------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHH-hccchHHHHHHHHH
Confidence 4667777888877543 221 112456778889999999999887 22 222 23677777777776
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHH
Q 035624 149 SPLVALIPTFMVPTGTGPSGFFITPLY 175 (775)
Q Consensus 149 ~p~~~~~~~~~~l~~~~~~~l~ig~~l 175 (775)
-..+-|.+.+.+++.++..++.++.-.
T Consensus 175 ssliGG~iaa~~l~lpl~~~lAmasG~ 201 (297)
T COG2431 175 SSLIGGLIAAFLLDLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 666666666777776666655554433
No 135
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=74.72 E-value=1.1e+02 Score=31.56 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 035624 354 NILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFV 433 (775)
Q Consensus 354 ~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~ 433 (775)
+.+-+.++.+.-+..+++.++.+|.+.. +.. .+.||....-+...+..+.|...+-.-...+++-++-..+++++.
T Consensus 90 Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll 165 (226)
T TIGR00659 90 IILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL 165 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666777888899888743 222 478999988888888888877544444444555555566677777
Q ss_pred Hhh
Q 035624 434 RKL 436 (775)
Q Consensus 434 ~~l 436 (775)
|++
T Consensus 166 ~~~ 168 (226)
T TIGR00659 166 RYF 168 (226)
T ss_pred HHc
Confidence 765
No 136
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=73.66 E-value=25 Score=38.52 Aligned_cols=108 Identities=16% Similarity=0.048 Sum_probs=65.6
Q ss_pred HHHHhh-CCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcc-cChHHHHhhh-hhHHH
Q 035624 65 SVLKRF-GIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVK-MDLSMVSKVG-RKALY 141 (775)
Q Consensus 65 ~ll~rl-~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle-~d~~~lk~~~-~~~~~ 141 (775)
.+++.+ ++|..+-.++.|+++-- +|.+++..-......-+.+..--...+++-+|+. +|++++-+.. ...+.
T Consensus 196 ~l~~~~~~Ih~~v~mII~~vi~k~-----~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vv 270 (347)
T TIGR00783 196 GLLKSFPGIPAYAFMILIAAALKA-----FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVV 270 (347)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhh
Confidence 334444 68999999999999864 6676531000111122223222233445557886 8999998877 55555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHhh
Q 035624 142 IGILSVISPLVALIPTFMVPTGTGP-SGFFITPLYYV 177 (775)
Q Consensus 142 i~~~~~l~p~~~~~~~~~~l~~~~~-~~l~ig~~ls~ 177 (775)
+.+.+++.-.+.+++++++++.... .++.-|++.+.
T Consensus 271 iiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~ 307 (347)
T TIGR00783 271 ICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSG 307 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccC
Confidence 6666666566667788898886554 45545556654
No 137
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.67 E-value=28 Score=38.69 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred HHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 296 AGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHDLRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 296 lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
+...++|....+..-+.++-.+.+..++..+++|.+.+..=.+.+.... ...| +...+..++..+.-++.+++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLED--LLSL-WFIPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555554456666677888888999999986655444333111 1122 223333333334445556666777
Q ss_pred hcCChHHHH--HHHHHHhhhhhHHHHHHhhhc
Q 035624 376 WKMHKNDAM--ALALIMNAKGIVEMAFYTFAS 405 (775)
Q Consensus 376 ~~~~~~~~~--~lg~~l~~rG~v~l~~~~~~~ 405 (775)
++.+.++.- .++...+.-|.+.+-+....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 87 FRLPKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred cCCCcccceEEEecccCCcchhhHHHHHHHHh
Confidence 777765543 223233445555555544443
No 138
>COG0679 Predicted permeases [General function prediction only]
Probab=72.19 E-value=82 Score=34.07 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHH
Q 035624 64 HSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIG 143 (775)
Q Consensus 64 ~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~ 143 (775)
..+-+-++.|.+++ .+.|+++.... +..-+ .-.+.++.+++....+.|+..|+.++....++...+....+
T Consensus 160 ~~~~~~~~nP~i~a-~i~g~~~~~~~---i~lP~-----~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~ 230 (311)
T COG0679 160 SVLKKLLTNPLIIA-LILGLLLNLLG---ISLPA-----PLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIA 230 (311)
T ss_pred HHHHHHHhCcHHHH-HHHHHHHHHcC---CCCcH-----HHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHH
Q ss_pred HH-HHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035624 144 IL-SVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTVS 222 (775)
Q Consensus 144 ~~-~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~ 222 (775)
.. ..++--+++..+++.++.+.... -.....+....++..-++.+. -..-.+++-+...++=.++.+.+......
T Consensus 231 ~~~kll~~Pl~~~~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 231 LSLKLLLAPLVALLVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHH
No 139
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=68.68 E-value=1.1e+02 Score=37.52 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhcc
Q 035624 113 NIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTS 179 (775)
Q Consensus 113 ~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts 179 (775)
++-+.++....|++.|+..+.+ +.............-++.+.+.+.+...++..++.+|.+++.=+
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhh
Confidence 4556677788899999999988 33322223333334455566666777778888999988887644
No 140
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=68.62 E-value=1.5e+02 Score=30.53 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 035624 104 HVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGT 164 (775)
Q Consensus 104 ~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~ 164 (775)
+.++++.+ +|-.-..|-.-+--+.+.+||+|+........+..+.++.+..++.+++.+
T Consensus 60 g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~ 118 (230)
T COG1346 60 GGQWINFL--LGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLS 118 (230)
T ss_pred ccHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566555 444555667777778899999999999888888888888899999988765
No 141
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=68.55 E-value=2.1e+02 Score=32.42 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHH
Q 035624 180 FPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATV 216 (775)
Q Consensus 180 ~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l 216 (775)
.|++....+.+|+.+.+.=-.+++++.+.|..+..+-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 5888888888887554444578899999999888653
No 142
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=67.43 E-value=11 Score=40.60 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=35.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDG 674 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~ 674 (775)
..++++.|.||+|+--.|.++.+.....+..+.++++.+-.+|.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~Fp 80 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCH
Confidence 34678999999999999999998865555678899987765554
No 143
>PRK09903 putative transporter YfdV; Provisional
Probab=67.16 E-value=1e+02 Score=33.36 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=62.4
Q ss_pred hCCChhHHHHhhhceeccccchhccccccccCc-ccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHH
Q 035624 70 FGIPIFISQIFVSILTFDDFFLVIKMENKIITP-EHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVI 148 (775)
Q Consensus 70 l~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~-~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l 148 (775)
++-|.+++. ++|+++.- +|..- | .-.+.++.+++....+-||..|..+.....+.. ++.+.....-.+
T Consensus 171 ~~nP~iia~-~~gl~~~l-----~~i~l----P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAP-VLATILVL-----VGVKI----PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHH-HHHHHHHH-----cCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 456888875 55555543 34322 3 467788899999999999999998877665443 333433343433
Q ss_pred -HHHHHHHHHHHhhcCChhHHHHHHHHHhhccHHHHHHHHhh
Q 035624 149 -SPLVALIPTFMVPTGTGPSGFFITPLYYVTSFPVIFCLLTH 189 (775)
Q Consensus 149 -~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 189 (775)
.|.+. ....++++.+. ...-...+.+....++...++.+
T Consensus 240 ~~P~i~-~~~~~~~~l~~-~~~~v~vl~aa~P~a~~~~i~A~ 279 (314)
T PRK09903 240 LMPLAL-LLVGMACHLNS-EHLQMMVLAGALPPAFSGIIIAS 279 (314)
T ss_pred HHHHHH-HHHHHHcCCCc-HHHHHHHHHHcccHHHHHHHHHH
Confidence 45543 44444444432 33344455555555555555544
No 144
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=66.84 E-value=10 Score=43.16 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=51.3
Q ss_pred cHHHHHHHHhhcCCcEEEEc---cccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcc-----cccccCCC
Q 035624 556 MHDDICTLALDKLASLVILS---FHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKR-----SVTHMDSS 627 (775)
Q Consensus 556 m~~~I~~~a~e~~adlIImg---~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~-----~~~~~~~~ 627 (775)
-+++||.+|+++++|+|++| ||....... .-+..++.+-+.-+..-||..=++-|..-.|. .+..
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~---~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY---- 112 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRK---TLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNY---- 112 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHH---HHHHHHHHHHHHccCCCceeeEEecccceeccccccceecc----
Confidence 38999999999999999999 343221111 11233555555666778999888888863222 2222
Q ss_pred CCccceEEEEecC--CcCh
Q 035624 628 ADSFSKVALLFLG--GNDD 644 (775)
Q Consensus 628 ~~~~~~i~~~f~g--g~dd 644 (775)
.+-.-+|.+|.++ |.+|
T Consensus 113 ~DpNlNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 113 EDPNLNISIPVFSIHGNHD 131 (646)
T ss_pred cCCCcceeeeeEEeecCCC
Confidence 1223478888877 6554
No 145
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=64.61 E-value=1.9e+02 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHhhcCChhHHHHHHHHHhh
Q 035624 112 GNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISP--LVALIPTFMVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 112 ~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p--~~~~~~~~~~l~~~~~~~l~ig~~ls~ 177 (775)
.+.-.+++.-.+|+-.||..+-+..-... +..-++++ -+..+.+.+.++++...++.++..++-
T Consensus 278 rdaFaVlFFvsVGmlf~P~~l~~~pl~vl--atllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaq 343 (408)
T COG4651 278 RDAFAVLFFVSVGMLFDPMILIQQPLAVL--ATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQ 343 (408)
T ss_pred HHHHHHHHHHHhhhhcCcHHhhcchHHHH--HHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHh
Confidence 34444555667888899988766544322 22222222 233444455567776777777766654
No 146
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=63.74 E-value=40 Score=35.97 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=33.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
++|++.+.||+|.--++.+.+++.++ .++.+++|+..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 69999999999999999999999988 99999999754
No 147
>PRK12342 hypothetical protein; Provisional
Probab=63.40 E-value=16 Score=38.40 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=60.3
Q ss_pred EecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHh-hcC--CCeEEEEEeecChhhHHH--
Q 035624 637 LFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDI-KKT--ECMRYEKHVVENGADTVE-- 711 (775)
Q Consensus 637 ~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~-~~~--~~v~y~e~~V~~g~~i~~-- 711 (775)
.+.=+|.|+-|++.|.|+.+ .|.++|++.+=++.. .+++.+++. ..- +-+...+... .|.|+..
T Consensus 30 ~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a---------~~~~l~r~alamGaD~avli~d~~~-~g~D~~ata 98 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLL---------QNSKVRKDVLSRGPHSLYLVQDAQL-EHALPLDTA 98 (254)
T ss_pred CccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChH---------hHHHHHHHHHHcCCCEEEEEecCcc-CCCCHHHHH
Confidence 33448999999999999994 689999999865421 111122322 111 2333443432 2445533
Q ss_pred -----HHHhcccCCcEEEEcccCCCC-----CccccccccCCCCCccccchhh
Q 035624 712 -----IVHSMVNQYDLIIVGRRHNLE-----CPQTSCLDQWSEFPELGVLGDL 754 (775)
Q Consensus 712 -----~i~~~~~~~DLiivG~~~~~~-----~~~~~gl~~w~e~~eLG~igd~ 754 (775)
+++. .+||||+-|+..... .|++..+-+| |-+.-+-++
T Consensus 99 ~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~~ 146 (254)
T PRK12342 99 KALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSKI 146 (254)
T ss_pred HHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEEE
Confidence 3444 359999999986432 4556555556 555555443
No 148
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=63.07 E-value=22 Score=37.43 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=60.2
Q ss_pred EecCCcChHHHHHHHHHHhhCCC-eEEEEEEeeecCCCCCCchhhhhHHHHHHHh-hcC-CC-eEEEEEeecChhhHHHH
Q 035624 637 LFLGGNDDREALTLAKRMGRDNK-VRLTVVHFIAASDDGDVDWETILDSEVLRDI-KKT-EC-MRYEKHVVENGADTVEI 712 (775)
Q Consensus 637 ~f~gg~ddreAl~~a~rma~~~~-~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~-~~~-~~-v~y~e~~V~~g~~i~~~ 712 (775)
.+.=.+.|+-|++.|.|+.+..+ .++|++.+=+++.. +++.+++. ..- ++ +...+... .|.|+...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------~~~~lr~aLAmGaD~avli~d~~~-~g~D~~~t 100 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------NAKGRKDVLSRGPDELIVVIDDQF-EQALPQQT 100 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------hHHHHHHHHHcCCCEEEEEecCcc-cCcCHHHH
Confidence 33447899999999999999864 89999998654321 11122222 111 22 22333322 23344433
Q ss_pred -------HHhcccCCcEEEEcccC-CCCCccccc-cccCCCCCccccchhh
Q 035624 713 -------VHSMVNQYDLIIVGRRH-NLECPQTSC-LDQWSEFPELGVLGDL 754 (775)
Q Consensus 713 -------i~~~~~~~DLiivG~~~-~~~~~~~~g-l~~w~e~~eLG~igd~ 754 (775)
+++ .+||||+-|++. +.++-++-. +.+|-..|-+..+-++
T Consensus 101 A~~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 101 ASALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred HHHHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 444 369999999986 323332222 2344444777766664
No 149
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=62.72 E-value=97 Score=29.43 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCh---hHHHHhhhceeccccchhccccccccCcccHHHHH-----HHHHHHHHHH
Q 035624 48 RIMLLLATMFTISQVFHSVLKRFGIPI---FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIG-----SMGNIGIALF 119 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~-----~l~~igl~~l 119 (775)
.++.|+++++.+..+...+.+-+++|- ++|.++-=+.| . ++... .+.++ .+.++++.|+
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~---~~~vk-------~~~v~~~a~~LL~~m~LfFV 74 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---C---TKVVK-------LEQVESLGTALTNNIGFLFV 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---H---hCCcC-------HHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888777777777653 33433321111 1 22221 12222 2334444444
Q ss_pred HHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHH
Q 035624 120 IFQSGVKMDLSMVSKVGRKALYIGILSVISPLVA 153 (775)
Q Consensus 120 lF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~ 153 (775)
==-+|+=..++.+++++-.....-+.+.++.++.
T Consensus 75 PagVGim~~~~ll~~~~~~Il~~ivvSTllvl~v 108 (141)
T PRK04125 75 PSGISVINSLGVMSQYPVQIIGVIIVATILLLAC 108 (141)
T ss_pred hhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445665666666666665555544554444443
No 150
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=62.14 E-value=13 Score=40.44 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=71.0
Q ss_pred hhHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhh
Q 035624 322 LVSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY-----WKMHKNDAMALALIMNAK 393 (775)
Q Consensus 322 ~~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~-----~~~~~~~~~~lg~~l~~r 393 (775)
+.++++=|+.|.-+|..+|+ +.+ ++.. . .. ..+-++-|.....+..+ .+++.+|+-.+|.+=..-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlan--P~~~-l-lG---aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGAD 203 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLAN--PRTL-L-LG---AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGAD 203 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhC--HHHH-H-HH---HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCC
Confidence 34678889999999999998 554 5441 1 12 22222222222222222 378999999998866777
Q ss_pred hhHHHHHHhhhccC--CCCChhhHHHHHHHHHHHHHhHHHHHHhhcCccccc-ccccccccccCCCCCceeEEEE
Q 035624 394 GIVEMAFYTFASDG--RYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRKY-AGYQIKKLVDCKPESELQIVCC 465 (775)
Q Consensus 394 G~v~l~~~~~~~~~--~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~~-~~~~~r~i~~~~~~~e~rILvc 465 (775)
|-.++.+.+..-.. |-|.-..|+-| .+.=++.||+.|.+-.+++|. .-++.|+ -.+..||+-|
T Consensus 204 GPTsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~-----VSk~eKIlFP 269 (433)
T PRK15475 204 GPTAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIRMVQLRT-----VSKREKILFP 269 (433)
T ss_pred CchHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCC-----CCccchhHHH
Confidence 77777665542211 11222333333 233456899999887554433 3234443 2333455554
No 151
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=61.74 E-value=61 Score=35.09 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=49.3
Q ss_pred hHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHH--
Q 035624 75 FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLV-- 152 (775)
Q Consensus 75 iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~-- 152 (775)
++|-++.|.+-||.. ...++|. ..+.+.- -+.+||...|++- -+++++..+..+.+-.++++.|.+
T Consensus 183 LlGgliIG~~~g~~g---~~~i~pf----~~~lF~G----~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEG---VESIKPF----FVDLFKG----VLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHHhheeCccc---hhhccch----hhccHHH----HHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 455566666667765 3333331 1111221 2566777777754 233444444444455556666654
Q ss_pred -HHHHHHHhhcCChhHHHHHHHHHhh
Q 035624 153 -ALIPTFMVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 153 -~~~~~~~~l~~~~~~~l~ig~~ls~ 177 (775)
+|..++++++.+...+.+++...+.
T Consensus 251 ~ig~~lg~~~gls~Gg~~llavLaAS 276 (327)
T PF05982_consen 251 LIGIGLGWLLGLSPGGAVLLAVLAAS 276 (327)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHhh
Confidence 6777788888776655555544433
No 152
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.01 E-value=14 Score=40.22 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=63.5
Q ss_pred hhHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhh
Q 035624 322 LVSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY-----WKMHKNDAMALALIMNAK 393 (775)
Q Consensus 322 ~~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~-----~~~~~~~~~~lg~~l~~r 393 (775)
+.++++=|+.|.-+|..+|+ +.+ ++.. . .. ..+-++-|.....+..+ .+++.+|+-.+|.+=..-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlan--P~~~-l-lG---aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGAD 203 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLAN--PRTL-L-LG---AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGAD 203 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhC--HHHH-H-HH---HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCC
Confidence 34678888999999999998 554 5441 1 12 22222222222222222 378999999998866777
Q ss_pred hhHHHHHHhhhccC--CCCChhhHHHHHHHHHHHHHhHHHHHHhhcCcccc
Q 035624 394 GIVEMAFYTFASDG--RYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRK 442 (775)
Q Consensus 394 G~v~l~~~~~~~~~--~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~ 442 (775)
|-.++.+.+..-.. |-|.-..|+-+ .+.=++.||+.|.+-.+++|
T Consensus 204 GPTsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER 250 (433)
T PRK15476 204 GPTAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKER 250 (433)
T ss_pred CchHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHh
Confidence 77777665542211 11222333333 23345689999988755443
No 153
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=60.97 E-value=14 Score=40.22 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=63.0
Q ss_pred hHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhhh
Q 035624 323 VSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY-----WKMHKNDAMALALIMNAKG 394 (775)
Q Consensus 323 ~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~-----~~~~~~~~~~lg~~l~~rG 394 (775)
.++++=|+.|.-+|..+|+ +.+ ++.. . .. ..+-++-|.....+..+ .+++.+|+-.+|.+=..-|
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlan--P~~~-l-lG---aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADG 204 (433)
T PRK15477 132 GSGVAPLVIFMGVGAMTDFGPLLAN--PRTL-L-LG---AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADG 204 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhC--HHHH-H-HH---HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCC
Confidence 4578888999999999998 554 5441 1 12 22222222222222222 3789999999988667777
Q ss_pred hHHHHHHhhhccC--CCCChhhHHHHHHHHHHHHHhHHHHHHhhcCcccc
Q 035624 395 IVEMAFYTFASDG--RYVPPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRK 442 (775)
Q Consensus 395 ~v~l~~~~~~~~~--~ii~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~ 442 (775)
-.++.+.+..-.. |-|.-..|+-+ .+.=++.||+.|.+-.+++|
T Consensus 205 PTsIfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER 250 (433)
T PRK15477 205 PTAIYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKER 250 (433)
T ss_pred chHHHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHh
Confidence 7777665542211 11222333333 23345689999988755443
No 154
>COG3329 Predicted permease [General function prediction only]
Probab=60.75 E-value=1.1e+02 Score=32.75 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=69.2
Q ss_pred chHHHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc------cCCCchhhHHHHHHHHHHHHHHHH
Q 035624 292 ELTVAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD------LRPQSFNIFIVQNILTVAWIVLVK 365 (775)
Q Consensus 292 ~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~------l~~~~~~~~~~~~~~~~vv~~~~K 365 (775)
+++.+.-|+.|++.+-... .-++.+-+-.. +.-.....+|.+=-. +.. . +...++-+.+.++.-
T Consensus 16 ~sP~llFf~~Gmlia~~ks-dl~iP~~i~~~----lslyLL~aIG~kGGveir~snl~a----~-v~~~~~~~aL~~li~ 85 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKS-DLEIPEAIYQA----LSLYLLLAIGFKGGVEIRNSNLTA----M-VLPVALGVALGFLIV 85 (372)
T ss_pred ccchHHHHHHHHHHHHHhc-cccCchHHHHH----HHHHHHHHHhcccceeeecCCcch----h-HHHHHHHHHHHHHHH
Confidence 4677777888887765420 00111111111 111223344544322 222 2 234455555667777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHH
Q 035624 366 FGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRF 417 (775)
Q Consensus 366 ~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~ 417 (775)
++..++..++.|++..|+...+..-+....+..+.+...++.--+.-+.|..
T Consensus 86 ~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 86 FIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 8888888888899999999999877777777777777666665566566544
No 155
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=60.15 E-value=2.7e+02 Score=30.72 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHc------CCCCcccch-HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHH
Q 035624 244 FIVMVVVRPAMLLIVRMT------PEGKEVSQT-GLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALV 316 (775)
Q Consensus 244 ~~~~~v~r~~~~~l~~~~------~~~~~~~e~-~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~ 316 (775)
.++..+-+|+++++..+. .+.++++.. -+.+-+.+.++++++.- .-.+++|.+.+|=.+.+.. ..+++.
T Consensus 231 aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P---~a~PLiGmlmfGNllrEsG-Vv~rLs 306 (433)
T PRK15475 231 ALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLP---DAAPLLGMFCFGNLMRESG-VVERLS 306 (433)
T ss_pred HHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhc-cHHHHH
Confidence 344445556666553321 122333322 24555555555555432 2348999999999998863 223333
Q ss_pred HhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 317 NKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 317 ~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
+..+.-.....--+.=..+|...+- +.+ +++ + .++.+-++++..-..++.+.+++
T Consensus 307 ~taqn~L~nivTIfLGl~VGa~~~A~~FL~--~~t-l-~Il~LGlvAF~~~TagGVL~aKl 363 (433)
T PRK15475 307 DTVQNGLINIVTIFLGLSVGAKLVADKFLQ--PQT-L-GILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHhhCC--hHH-H-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333222222222233466666664 333 444 2 23344444444444444444443
No 156
>COG2985 Predicted permease [General function prediction only]
Probab=60.12 E-value=32 Score=38.99 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=67.3
Q ss_pred hhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHH---HHhhhhhHHHHHHHHHHHH
Q 035624 74 IFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSM---VSKVGRKALYIGILSVISP 150 (775)
Q Consensus 74 ~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~---lk~~~~~~~~i~~~~~l~p 150 (775)
..-|.+++|++||- +|.+.|..|--.......+.++|+++||=-+|++---+. +-..+-.....|.+-.++|
T Consensus 397 ~aGGpLivaLiLG~-----ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp 471 (544)
T COG2985 397 NAGGPLIVALILGF-----IGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVP 471 (544)
T ss_pred ccccHHHHHHHHHH-----hcccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHH
Confidence 34567777888774 455555222123566778999999976666666544333 3344555556666667778
Q ss_pred HHHHHHHHHhh-cCChhHHHHHHHH-HhhccHHHHHHHHhhcc
Q 035624 151 LVALIPTFMVP-TGTGPSGFFITPL-YYVTSFPVIFCLLTHLK 191 (775)
Q Consensus 151 ~~~~~~~~~~l-~~~~~~~l~ig~~-ls~Ts~~vv~~iL~el~ 191 (775)
.+.++++++++ ..+ +....|.+ -+.|++|.+.- ..|..
T Consensus 472 ~i~~~llg~~v~kmn--~~~l~G~laGs~T~ppaLa~-and~~ 511 (544)
T COG2985 472 VIIVFLLGRYVLKMN--WLLLCGALAGSMTDPPALAF-ANDAA 511 (544)
T ss_pred HHHHHHHHHHHHhcc--HHHHhhHHhcCCCChHHHHH-Hhhcc
Confidence 88888888765 333 34444544 47899887654 34433
No 157
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=59.54 E-value=29 Score=33.09 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=27.8
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
++++.|.||+|.--.+.++.+..... -+++++++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 47889999999988888887765543 46777877654
No 158
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=58.07 E-value=1.5e+02 Score=32.94 Aligned_cols=230 Identities=17% Similarity=0.127 Sum_probs=114.7
Q ss_pred EEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEee-----cccC-----Cccchhhhh-hhhcccccccccchHHHHHHH
Q 035624 464 CCIYIPSNISSAINLLSISCPRNECPTVVNALHLI-----KLSD-----QATSIFVSH-QKKKKNFSAYSYSENVIVSFK 532 (775)
Q Consensus 464 vcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlv-----el~~-----~~~~~~~~~-~~~~~~~~~~~~~~~i~~~f~ 532 (775)
.++++.++++..-++++++.. ....+.+-+.|.= ..+. .++++.... +......-+.+..+++++.|.
T Consensus 74 ~~l~~d~~i~~~~~vt~avH~-~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~ 152 (363)
T COG1902 74 PGLWSDAQIPGLKRLTEAVHA-HGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFA 152 (363)
T ss_pred CccCChhHhHHHHHHHHHHHh-cCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHH
Confidence 456778889999999999974 2344566666652 1110 001110000 000011112234566666666
Q ss_pred HccccC---C-cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccc--cccccCCCccccchhhHHHHHHHhccCCC
Q 035624 533 KFGGLR---W-GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFH--RTWYIDGSLESDDQSVRNLNLRILEKAPC 606 (775)
Q Consensus 533 ~~~~~~---~-~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h--~~~~~d~~~~~~~~~~~~~~~kVl~~Apc 606 (775)
+-+++. . +.|.+|. +-. .-+++ -+-|.+ +...+.|.++.+-+...++.+.|-+.-+.
T Consensus 153 ~AA~rA~~AGFDgVEIH~--AhG--YLi~q-------------Flsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 153 RAARRAKEAGFDGVEIHG--AHG--YLLSQ-------------FLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred HHHHHHHHcCCCEEEEee--ccc--hHHHH-------------hcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 654432 2 5677774 210 11111 112221 12223455666667788899998888776
Q ss_pred ceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC--Cchh-hhhH
Q 035624 607 SVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD--VDWE-TILD 683 (775)
Q Consensus 607 ~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~--~~~~-~~~d 683 (775)
+.-|.+ |-.. .. ....+|.+-.|+.++++.+.+... +..+++........ .... ...-
T Consensus 216 ~~~vg~-Rls~--------------~d--~~~~~g~~~~e~~~la~~L~~~G~--~d~i~vs~~~~~~~~~~~~~~~~~~ 276 (363)
T COG1902 216 DFPVGV-RLSP--------------DD--FFDGGGLTIEEAVELAKALEEAGL--VDYIHVSEGGYERGGTITVSGPGYQ 276 (363)
T ss_pred CceEEE-EECc--------------cc--cCCCCCCCHHHHHHHHHHHHhcCC--ccEEEeecccccCCCCccccccchh
Confidence 532222 3210 01 111128888999999999998775 44455543322111 0111 1122
Q ss_pred HHHHHHhhcC-CC-eEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCC
Q 035624 684 SEVLRDIKKT-EC-MRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLEC 733 (775)
Q Consensus 684 ~~~~~~~~~~-~~-v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~ 733 (775)
..|.+.++.. .. ++-. -.+.+.++..+.+++ ..+||+.+||-.=.++
T Consensus 277 ~~~a~~i~~~~~~pvi~~-G~i~~~~~Ae~~l~~--g~aDlVa~gR~~ladP 325 (363)
T COG1902 277 VEFAARIKKAVRIPVIAV-GGINDPEQAEEILAS--GRADLVAMGRPFLADP 325 (363)
T ss_pred HHHHHHHHHhcCCCEEEe-CCCCCHHHHHHHHHc--CCCCEEEechhhhcCc
Confidence 2344445443 21 1111 114455555666665 5799999999864443
No 159
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=58.00 E-value=41 Score=38.35 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=41.6
Q ss_pred cceEEEEecCCcChHHHHHHHHHHh-hCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMG-RDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT 693 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma-~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 693 (775)
..++++.+-||+|.--.+.+..++. ..++.+++++||+..-.. +.+.++++.+++..+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----~s~~~~~~~~~~~~~ 73 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----NADSWVKHCEQVCQQ 73 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----chHHHHHHHHHHHHH
Confidence 3689999999999998888888776 456889999999854221 123344566666443
No 160
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=56.63 E-value=6.7 Score=41.06 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=72.7
Q ss_pred hHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHH
Q 035624 323 VSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMA 399 (775)
Q Consensus 323 ~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~ 399 (775)
.++++=++.|..+|..+|+ +.+ ++. +++. ..+-++- ..+++.+...++..+|+-.+|.+=+.-|-.++.
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllan--Pkt-llLG----aAAQ~GI-F~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy 153 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLAN--PKT-LLLG----AAAQFGI-FATVFGALALGFTPKEAASIGIIGGADGPTAIY 153 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcC--cHH-HHhh----hHHHhch-HHHHHHHHHhCCCHhhhhheeeeccCCCCceEE
Confidence 3578888899999999998 444 544 2211 1122222 234455677789999999988766666666554
Q ss_pred HHhhhccCCCCChhhHHHHHHH----HHHHHHhHHHHHHhhcCccccccc-ccccccccCCCCCceeEEEEe
Q 035624 400 FYTFASDGRYVPPNMFRFMLGI----IIVMGSIVPIFVRKLYDPSRKYAG-YQIKKLVDCKPESELQIVCCI 466 (775)
Q Consensus 400 ~~~~~~~~~ii~~~~~~~lv~~----~il~t~i~~~l~~~l~~~~~~~~~-~~~r~i~~~~~~~e~rILvcv 466 (775)
+.+. +.++....+.++ ..+.-++.||+.|.+-.+++|..+ .+.|+ ..+..||+.|+
T Consensus 154 ~t~~------LAP~Ll~~iAvAAYSYMALVPiIQPpimkaLTt~~ERkIrM~qlR~-----Vsk~EkIlFPi 214 (375)
T COG1883 154 LTNK------LAPELLGAIAVAAYSYMALVPIIQPPIMKALTTKEERKIRMTQLRT-----VSKREKILFPI 214 (375)
T ss_pred eccc------cCHHHHHHHHHHHHHHHHHhhhcccHHHHHhcCHHHHHhhhhcccc-----ccchhhhhhhH
Confidence 4332 334433332221 123356789999988766554432 22232 23445777664
No 161
>PRK01658 holin-like protein; Validated
Probab=56.42 E-value=1.6e+02 Score=27.19 Aligned_cols=97 Identities=12% Similarity=0.205 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC---hhHHHHhhhceeccccchhccccccccCcccHHHHH-----HHHHHHHHHH
Q 035624 48 RIMLLLATMFTISQVFHSVLKRFGIP---IFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIG-----SMGNIGIALF 119 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~rl~~P---~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~-----~l~~igl~~l 119 (775)
.++.|+++++.+..+...+.+-+++| +++|.++-=+.+ . +|... .+.++ .++++++.|+
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~---~~~ik-------~~~v~~~a~~Ll~~m~llFV 71 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---S---FKILK-------LKWIELGAETLLAELPLFFI 71 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---H---hCCcC-------HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888777777777777765 344444311111 1 33322 22222 3444555554
Q ss_pred HHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 035624 120 IFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPT 157 (775)
Q Consensus 120 lF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~ 157 (775)
==.+|+=-..+.+++++-+...+.+.+.++.++.+..+
T Consensus 72 Pa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~ 109 (122)
T PRK01658 72 PSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYL 109 (122)
T ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567766677777777776666666666555544433
No 162
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=55.86 E-value=27 Score=33.71 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=45.4
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC--CCeEEE-EEeec--ChhhHHHHHHh
Q 035624 641 GNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT--ECMRYE-KHVVE--NGADTVEIVHS 715 (775)
Q Consensus 641 g~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~v~y~-e~~V~--~g~~i~~~i~~ 715 (775)
.+.|+|+++.|+++++..|.+++++-+- +.. +..+.+.+.+... +++... ....+ +.+...+.+.+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G-~~~--------~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~ 84 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLG-PAE--------EAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAE 84 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEE-TCC--------CHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEe-cch--------hhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHH
Confidence 4679999999999999999999999875 211 1222222223322 333332 22222 12224444433
Q ss_pred cc--cCCcEEEEcccC
Q 035624 716 MV--NQYDLIIVGRRH 729 (775)
Q Consensus 716 ~~--~~~DLiivG~~~ 729 (775)
.. .++|+|++|...
T Consensus 85 ~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 85 LIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHT-SEEEEESSH
T ss_pred HHHhcCCCEEEEcCcC
Confidence 33 569999999874
No 163
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=54.88 E-value=43 Score=32.29 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhccCCC---CchhHHHHhhhhhhHhhhHHHHHHHHhhcccc-----cCCCchhhHHHHHHHHHHHHHHH
Q 035624 293 LTVAGLYIVGLAVPRGP---PLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD-----LRPQSFNIFIVQNILTVAWIVLV 364 (775)
Q Consensus 293 ~~~lgaf~aGl~~~~~~---~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~-----l~~~~~~~~~~~~~~~~vv~~~~ 364 (775)
...-|++++|+++.+.. |....+.+....+.+++-+-+|...+|++.=. +.+ ...| ....+..++.++.
T Consensus 22 G~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~--~gg~-~~~~~g~~v~~~~ 98 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD--GGGL-LRINGGALITVVP 98 (154)
T ss_pred cccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--cChH-HHHHHHHHHHHHH
Confidence 33457778888777643 33334444455666788889999999999775 333 1111 1222333334444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 035624 365 KFGTCSLLLLYWKMHKNDAMALALI 389 (775)
Q Consensus 365 K~l~~~l~~~~~~~~~~~~~~lg~~ 389 (775)
-.+..++..+++|+++. ...|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~~G~~ 121 (154)
T TIGR01625 99 TLLVAVALIKLLRINYA--LTAGML 121 (154)
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHH
Confidence 56666666788899875 344443
No 164
>PRK01821 hypothetical protein; Provisional
Probab=53.30 E-value=1.8e+02 Score=27.38 Aligned_cols=98 Identities=9% Similarity=0.074 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCh---hHHHHhhhceeccccchhcccccc-ccCcccHHHHHHHHHHHHHHHHHHH
Q 035624 48 RIMLLLATMFTISQVFHSVLKRFGIPI---FISQIFVSILTFDDFFLVIKMENK-IITPEHVQLIGSMGNIGIALFIFQS 123 (775)
Q Consensus 48 ~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~IlaGillGP~~~~~lg~~~~-~~f~~~~~~l~~l~~igl~~llF~~ 123 (775)
.++.|+++++.+..+...+.+-+++|- ++|.++-=+.+ . +|...+ ++ ....-..++++++.|+==.+
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~---~~~vk~~~v---~~~a~~LL~~m~LfFVPa~V 80 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---A---LQILPAKWV---KPGCSLLIRYMALLFVPIGV 80 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---H---hCCcCHHHH---HHHHHHHHHHHHHHHhhhHH
Confidence 467788888887777777777777652 33333311111 1 233221 00 01111223444444444456
Q ss_pred hcccChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 035624 124 GVKMDLSMVSKVGRKALYIGILSVISPLVAL 154 (775)
Q Consensus 124 Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~ 154 (775)
|+=...+.+++++.+....-+.+.++.++.+
T Consensus 81 Gim~~~~ll~~~~~~il~~ivvST~lvl~vt 111 (133)
T PRK01821 81 GVMQYYDLLRAQFGPIVVSCIVSTLVVLLVV 111 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777666555555555554433
No 165
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=52.27 E-value=3.7e+02 Score=29.78 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHH----c--CCCCcccch-HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHH
Q 035624 245 IVMVVVRPAMLLIVRM----T--PEGKEVSQT-GLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVN 317 (775)
Q Consensus 245 ~~~~v~r~~~~~l~~~----~--~~~~~~~e~-~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~ 317 (775)
++..+-+|+++++..+ . .+.++++.. -+.+-+.+.++++++.- .-.+++|.+.+|-.+.+.. ..+++.+
T Consensus 232 LVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P---~a~PLiGmlmfGNllrEsG-Vv~rLs~ 307 (433)
T PRK15477 232 LVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLP---DAAPLLGMFCFGNLMRESG-VVERLSD 307 (433)
T ss_pred HHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhc-cHHHHHH
Confidence 3444455666555322 1 122333332 24455555555555432 2348999999999998863 2233333
Q ss_pred hhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 318 KFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 318 ~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
..+.-...+.--+.=..+|...+- +.+ +++ + .++.+-++++..-..++.+.+++
T Consensus 308 taqn~L~nivTIfLGl~VGa~~~A~~FL~--~~t-L-~Il~LGlvAF~~~TagGvL~aKl 363 (433)
T PRK15477 308 TVQNGLINIVTIFLGLSVGAKLVADKFLQ--PQT-L-GILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHhhCC--hHH-H-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 333222222222233466666664 333 444 2 23344444444444444444443
No 166
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=51.53 E-value=3.7e+02 Score=29.69 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHH----c--CCCCcccch-HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCchhHHHH
Q 035624 245 IVMVVVRPAMLLIVRM----T--PEGKEVSQT-GLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGPPLGSALVN 317 (775)
Q Consensus 245 ~~~~v~r~~~~~l~~~----~--~~~~~~~e~-~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~ 317 (775)
++..+-+|+++++..+ . .+.++++.. -+.+-+.+.++++++.- .-.+++|.+.+|-.+.+.. ..+++.+
T Consensus 232 LVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P---~a~PLiGmlmfGNllrEsG-Vv~rLs~ 307 (433)
T PRK15476 232 LVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLP---DAAPLLGMFCFGNLMRESG-VVERLSD 307 (433)
T ss_pred HHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhc-cHHHHHH
Confidence 3444455666555322 1 122333332 24455555555555432 2348999999999998863 2233333
Q ss_pred hhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 318 KFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 318 ~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
..+.-...+.--+.=..+|...+- +.+ +++ + .++.+-++++..-..++.+.+++
T Consensus 308 taqn~L~nivTIfLGl~VGa~~~A~~FL~--~~t-L-~Il~LGlvAF~~~TagGvL~aKl 363 (433)
T PRK15476 308 TVQNGLINIVTIFLGLSVGAKLVADKFLQ--PQT-L-GILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHhhCC--hHH-H-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 333222222222233466666664 333 444 2 23344444444444444444443
No 167
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=51.11 E-value=58 Score=35.13 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=62.6
Q ss_pred hhHhhhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHhh
Q 035624 322 LVSGFFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKM------HKNDAMALALIMNA 392 (775)
Q Consensus 322 ~~~~~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~------~~~~~~~lg~~l~~ 392 (775)
+.++++=|+.|.-+|..+|+ +.+ ++. .++-..+=++-| .+++.+...|+ +.+|+-.+|.+=..
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllan--P~~-----~llGaaAQ~GiF-~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgA 131 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLAN--PRT-----LLLGAAAQFGIF-ATVFGALTLNFFGIISFSLPQAAAIGIIGGA 131 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhC--hHH-----HHHHHHHHhhHH-HHHHHHHHhCCCcccccChhhceeeeeeccC
Confidence 34678889999999999998 554 433 111222222222 23444555677 67999888876666
Q ss_pred hhhHHHHHHhhhccCCCC---ChhhHHHHHHHHHHHHHhHHHHHHhhcCcccc
Q 035624 393 KGIVEMAFYTFASDGRYV---PPNMFRFMLGIIIVMGSIVPIFVRKLYDPSRK 442 (775)
Q Consensus 393 rG~v~l~~~~~~~~~~ii---~~~~~~~lv~~~il~t~i~~~l~~~l~~~~~~ 442 (775)
-|-.++.+.+... -+++ .-..|+-+ .+.=++.||+.|.+-.+++|
T Consensus 132 DGPt~If~s~~la-p~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 132 DGPTAIYLSGKLA-PELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKER 179 (354)
T ss_pred CCchhhhhHhhhh-hHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHh
Confidence 7776665554322 1122 22223322 23345689999988755443
No 168
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=50.47 E-value=2e+02 Score=32.56 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred hhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhh
Q 035624 320 DCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKG 394 (775)
Q Consensus 320 ~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG 394 (775)
..++..+.+.+...-.|+++++ +.. ..| ....+..+...+.-.+.+..+.+.++.+|.|++.+|.+.+..-
T Consensus 60 Ay~vg~lALaiILfdgG~~T~lss~r~---a~~-palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 60 AYMVGNLALAIILFDGGFGTQLSSFRV---AAG-PALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHHhhcCccCCcHHHHHH---Hhh-hhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 3344556666666677888887 222 122 2233444444455666667778889999999999998776543
No 169
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=50.45 E-value=35 Score=36.08 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHhhCCChhHHHHhhhceeccccchhccccc
Q 035624 65 SVLKRFGIPIFISQIFVSILTFDDFFLVIKMEN 97 (775)
Q Consensus 65 ~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~ 97 (775)
.+++++..-..+.||+.|+++|-. ++++.
T Consensus 6 ~l~~~~~~gsLv~qI~iGlvlGi~----~a~~s 34 (407)
T COG3633 6 KLFRLLARGSLVKQILIGLVLGIL----LAIIS 34 (407)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH----HHhcC
Confidence 456667778899999999999954 56654
No 170
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=49.49 E-value=3.1e+02 Score=28.08 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHHHH
Q 035624 353 QNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIF 432 (775)
Q Consensus 353 ~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l 432 (775)
.++.-++++.+.-+..+++.++.++.+..-.. .+.+|....-+...+..+.|...+-.-..++++-++-..++|++
T Consensus 79 ~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~----Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 79 PILVGVLVGSLVSIFSAVLLARLLGLSPEIIL----SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH----HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 34455555666677778888899888764332 46899988888888888777765544444455555555667777
Q ss_pred HHhh
Q 035624 433 VRKL 436 (775)
Q Consensus 433 ~~~l 436 (775)
.|++
T Consensus 155 lk~~ 158 (215)
T PF04172_consen 155 LKLL 158 (215)
T ss_pred HhHc
Confidence 7764
No 171
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=48.76 E-value=15 Score=35.27 Aligned_cols=96 Identities=27% Similarity=0.257 Sum_probs=51.2
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeee---cCCCCC---------CchhhhhHHHHHHHhhcCCCeEEEE
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIA---ASDDGD---------VDWETILDSEVLRDIKKTECMRYEK 700 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~---~~~~~~---------~~~~~~~d~~~~~~~~~~~~v~y~e 700 (775)
+++++|.||+|.. +|.-+-+..|..++++.++- ++-... ..+--++|++.+++-.. ...+|
T Consensus 2 ~v~vLfSGGKDSS----LaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~e---m~ied 74 (198)
T COG2117 2 DVYVLFSGGKDSS----LAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREILEDAVE---MIIED 74 (198)
T ss_pred ceEEEecCCCchh----HHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHHHHHHHH---HHHhc
Confidence 5789999999975 45566677788888888763 111000 00111233333333321 01111
Q ss_pred EeecChhh-----HHHHHHhcccCCcEEEEcccCCCCCcccc
Q 035624 701 HVVENGAD-----TVEIVHSMVNQYDLIIVGRRHNLECPQTS 737 (775)
Q Consensus 701 ~~V~~g~~-----i~~~i~~~~~~~DLiivG~~~~~~~~~~~ 737 (775)
..-.++.+ .++++.+ .+||.|.=||+++..-|.++
T Consensus 75 g~P~~aIq~iH~~alE~~A~--r~~~~iaDGTRRDDrvP~ls 114 (198)
T COG2117 75 GYPRNAIQYIHEMALEALAS--REVDRIADGTRRDDRVPKLS 114 (198)
T ss_pred CCCchHHHHHHHHHHHHHHH--HHHHHHcCCCcccccCcccc
Confidence 11112200 2233333 36999999999998877665
No 172
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=48.72 E-value=3e+02 Score=31.03 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=66.5
Q ss_pred HhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcc-cChHHHHhhhhhHHHH-HHH
Q 035624 68 KRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVK-MDLSMVSKVGRKALYI-GIL 145 (775)
Q Consensus 68 ~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle-~d~~~lk~~~~~~~~i-~~~ 145 (775)
+.+++|..+..|+.=+++-- +|.++..+=....++.+.++.--...+|+-+|+. +|++++.+.......+ .+.
T Consensus 267 ~~i~ih~~a~mIi~~~i~K~-----~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~ 341 (414)
T PF03390_consen 267 KLIGIHAYAWMIILVAIVKA-----FGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLA 341 (414)
T ss_pred HhcCCcHHHHHHHHHHHHHH-----hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHH
Confidence 34589999988887776642 5666431100234455556666666789999998 9999988876554443 344
Q ss_pred HHHHHHHHHHHHHHhhcCChh-HHHHHHHHHhh
Q 035624 146 SVISPLVALIPTFMVPTGTGP-SGFFITPLYYV 177 (775)
Q Consensus 146 ~~l~p~~~~~~~~~~l~~~~~-~~l~ig~~ls~ 177 (775)
.++...+.++.+++++++... .++.-|.+.+.
T Consensus 342 ~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an 374 (414)
T PF03390_consen 342 TVLGAVIGAFLVGKLVGFYPVESAITAGLCMAN 374 (414)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHhhhcccC
Confidence 444444556777888876544 55555556654
No 173
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=48.72 E-value=2.6e+02 Score=28.58 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=42.6
Q ss_pred HHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH-hhccHHHHHHHHhhcc
Q 035624 118 LFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLY-YVTSFPVIFCLLTHLK 191 (775)
Q Consensus 118 ~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~l-s~Ts~~vv~~iL~el~ 191 (775)
-.-+-.-+-=+.+.+||+++........+.++.+..+..++++++.+.. +..+.+- |+| .|+...+-+++|
T Consensus 59 tVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~Sl~pkSVT-tpiAi~is~~iG 130 (215)
T PF04172_consen 59 TVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IILSLAPKSVT-TPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHHHHHHHhh-HHHHHHHHHHhC
Confidence 3344444445677788888888777777777777777777887776432 2222222 233 355555544444
No 174
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=48.40 E-value=23 Score=38.22 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=34.2
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCe-EEEEEEee
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKV-RLTVVHFI 668 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~-~ltvl~~~ 668 (775)
+.+|++-|.||+|.---|+++.+.++..+- +++|+++-
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 569999999999999999999999988775 89999973
No 175
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=45.80 E-value=46 Score=32.53 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.4
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
++++.|-||.|.--++.++++. |.+++.+++...
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 4789999999999888888773 778899999765
No 176
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=44.88 E-value=67 Score=34.95 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeE-EEEEee-cChhhHHHHHHhccc-CCcEE
Q 035624 647 ALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMR-YEKHVV-ENGADTVEIVHSMVN-QYDLI 723 (775)
Q Consensus 647 Al~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~-y~e~~V-~~g~~i~~~i~~~~~-~~DLi 723 (775)
|....+|+-+..+ .--..+|+++.... -+..++.+..+..+. |.|.+- ....||.+++++|.+ ..|||
T Consensus 34 a~~~v~rfL~~l~-~~~~~~flt~p~~m--------G~~~~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdlI 104 (355)
T COG3199 34 AIVRVKRFLKKLD-ANGDVEFLTPPGPM--------GESLAEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDLI 104 (355)
T ss_pred HHHHHHHHHHhcc-ccCceEEEeCCccc--------chhHHHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceEE
Confidence 4555778877777 22345566654431 222334444443344 888876 668899999999988 79999
Q ss_pred EEcccCCCCCccccccccCCCCCccc
Q 035624 724 IVGRRHNLECPQTSCLDQWSEFPELG 749 (775)
Q Consensus 724 ivG~~~~~~~~~~~gl~~w~e~~eLG 749 (775)
++--+.|-..-..++. =.+-|-||
T Consensus 105 vfaGGDGTarDVa~av--~~~vPvLG 128 (355)
T COG3199 105 VFAGGDGTARDVAEAV--GADVPVLG 128 (355)
T ss_pred EEeCCCccHHHHHhhc--cCCCceEe
Confidence 9865544333333443 12335555
No 177
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=43.28 E-value=4e+02 Score=27.61 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 035624 104 HVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGT 164 (775)
Q Consensus 104 ~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~ 164 (775)
..+++..+ +|-.-.-|-.-+--+.+.+||+++..+.-...|.++.++.+..++.+++.+
T Consensus 63 g~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~ 121 (232)
T PRK04288 63 GGDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLD 121 (232)
T ss_pred hhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 34444444 344444555566667888899998888777778888888788888877755
No 178
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=42.35 E-value=4.5e+02 Score=28.03 Aligned_cols=122 Identities=9% Similarity=-0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHH------HHHHHHH
Q 035624 50 MLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGI------ALFIFQS 123 (775)
Q Consensus 50 l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl------~~llF~~ 123 (775)
.=|+..+++-..+++.-.+|--=|...-.|=.|.++-+..- -|..+.-+- .++..+..+-..|+ .++.+-+
T Consensus 18 ~gq~~Mi~v~~~llyLaI~k~~EPlLL~PIgfG~iLvNiP~--ag~~~~~~~-~~~G~~~~~~~~gi~~~i~PllIFmGv 94 (375)
T COG1883 18 WGQIIMILVGLLLLYLAIVKKFEPLLLLPIGFGGILVNIPG--AGLADTALE-GNPGVLALFYKVGIGSGIFPLLIFMGV 94 (375)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCceEeeecccceeeecCCc--chhhccccc-CCCcHHHHHHHHHhccCcccHHHHhcc
Confidence 33555566655566665566556777666667777664330 122110000 12344444444442 2445566
Q ss_pred hcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh
Q 035624 124 GVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYY 176 (775)
Q Consensus 124 Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls 176 (775)
|--+|+.-+-.+.|..+.-+..++-+= ...+.+..+++...++-.+|++-.
T Consensus 95 GAmTDFgpllanPktllLGaAAQ~GIF--~t~~~A~~lgf~~~eAasIgIIGG 145 (375)
T COG1883 95 GAMTDFGPLLANPKTLLLGAAAQFGIF--ATVFGALALGFTPKEAASIGIIGG 145 (375)
T ss_pred chhcccchhhcCcHHHHhhhHHHhchH--HHHHHHHHhCCCHhhhhheeeecc
Confidence 778999999888887776555554322 222333445555555555554443
No 179
>COG3371 Predicted membrane protein [Function unknown]
Probab=41.60 E-value=2.2e+02 Score=28.18 Aligned_cols=61 Identities=10% Similarity=-0.110 Sum_probs=39.3
Q ss_pred hhCCChhHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHH
Q 035624 69 RFGIPIFISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKAL 140 (775)
Q Consensus 69 rl~~P~iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~ 140 (775)
|.+-+.-.-.+++|+.+.-. |. ||+.. ....+..+...+++|.+.+-+...+.+++.+...
T Consensus 73 k~~~~g~~ll~is~lfLaLV-----GV-----FpEgt-~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~ 133 (181)
T COG3371 73 KIENYGGALLIISGLFLALV-----GV-----FPEGT-PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFG 133 (181)
T ss_pred HhhhcchHHHHHHHHHHHhe-----ee-----CCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 55555555667788776643 33 33222 4456677778888999999888888777544433
No 180
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=40.47 E-value=6.3e+02 Score=30.09 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCChh----HHHHHHHHHhhccHHHHH-HHHhhcc
Q 035624 139 ALYIGILSVISPLVALIPTFMVP-TGTGP----SGFFITPLYYVTSFPVIF-CLLTHLK 191 (775)
Q Consensus 139 ~~~i~~~~~l~p~~~~~~~~~~l-~~~~~----~~l~ig~~ls~Ts~~vv~-~iL~el~ 191 (775)
...++.++..+.+++.+++..++ +.... .++.+++-+++=+..++. ++-+|++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 33445555555555555555555 54433 444444444443333333 4444444
No 181
>PRK08185 hypothetical protein; Provisional
Probab=40.30 E-value=1.6e+02 Score=31.56 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccce
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSK 633 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~ 633 (775)
..+.+.|++.|++.+..+|+.-+.+.-...+ ..+........++++.||.+=-|++.++.....-. ...+..
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai--~~Gf~S 94 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAI--RCGFTS 94 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HcCCCE
Confidence 5789999999999999999999877643322 12677788899999999998889985433211000 011223
Q ss_pred EEEEecCC-cChHHHHHHHHHHh---hCCCeEE
Q 035624 634 VALLFLGG-NDDREALTLAKRMG---RDNKVRL 662 (775)
Q Consensus 634 i~~~f~gg-~ddreAl~~a~rma---~~~~~~l 662 (775)
+.+.|. -+..|-+++++++. ...|+.+
T Consensus 95 --VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 95 --VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred --EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 566663 35677777777765 6666665
No 182
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=39.93 E-value=2.2e+02 Score=33.61 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=43.2
Q ss_pred HhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCChHHHHHHHHHHhh
Q 035624 324 SGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY---------WKMHKNDAMALALIMNA 392 (775)
Q Consensus 324 ~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~---------~~~~~~~~~~lg~~l~~ 392 (775)
..+++|....-.|++++. +.. .| ..++.+.+++++.-.+.+....++ .++++.+++.+|.++++
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~----n~-~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSa 143 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE----NL-GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISA 143 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcC
Confidence 456888888888999998 333 22 223333333333333322222221 25699999999999999
Q ss_pred hhhHHHH
Q 035624 393 KGIVEMA 399 (775)
Q Consensus 393 rG~v~l~ 399 (775)
..-+...
T Consensus 144 TDPVAVl 150 (559)
T TIGR00840 144 VDPVAVL 150 (559)
T ss_pred CchHHHH
Confidence 8876544
No 183
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=39.56 E-value=1.7e+02 Score=31.52 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 035624 76 ISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALI 155 (775)
Q Consensus 76 v~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~ 155 (775)
+-.++.|+++|+.- . +-.+.+..-..+-..|+-|-.|-.+|++.+.+.+-.-..+|+...+++....+
T Consensus 175 ilPlliG~ilGNLD-----~-------~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 175 VLPFLVGFALGNLD-----P-------ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHHhcCC-----H-------HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 33456888887632 1 11222333333446688899999999999988888888888777777777666
Q ss_pred HHHHhhc
Q 035624 156 PTFMVPT 162 (775)
Q Consensus 156 ~~~~~l~ 162 (775)
....+++
T Consensus 243 ~~dr~~~ 249 (314)
T TIGR00793 243 LADKFIG 249 (314)
T ss_pred HHHHHhc
Confidence 6666663
No 184
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=39.45 E-value=1e+02 Score=32.33 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCC--CeEEEEEEeee
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDN--KVRLTVVHFIA 669 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~--~~~ltvl~~~~ 669 (775)
..+|++.+.||.|.--.+.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4589999999999988888888887654 46778888764
No 185
>COG3748 Predicted membrane protein [Function unknown]
Probab=39.16 E-value=3.1e+02 Score=29.65 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=26.2
Q ss_pred HhhhHHHHHHHHhhcccc-cCCCchhhHHHHHHHHHHHHHHHHH
Q 035624 324 SGFFLPIFVTTSAMRIHD-LRPQSFNIFIVQNILTVAWIVLVKF 366 (775)
Q Consensus 324 ~~~f~PifF~~~G~~id~-l~~~~~~~~~~~~~~~~vv~~~~K~ 366 (775)
+-+-+|+.|+.+.=+... ... ...| .++.++.+.++..|-
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt--~fnW-ii~alv~l~gV~IRh 266 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGT--QFNW-IIAALVFLMGVLIRH 266 (407)
T ss_pred ceehHHHHHHHHhccCcccccC--chhH-HHHHHHHHHHHHHHH
Confidence 457899999998777777 555 5577 445555555554443
No 186
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=38.56 E-value=4.7e+02 Score=27.07 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=52.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccC
Q 035624 546 TFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMD 625 (775)
Q Consensus 546 ~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~ 625 (775)
..+.++|.+..-++..+.+.+..+|.|++|- +. .+....++.+.+=+..+.||.++....... +
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGG--S~--------~~~~~d~vv~~ik~~~~lPvilfPg~~~~v---s--- 73 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGG--SD--------TGVTLDNVVALIKRVTDLPVILFPGSPSQV---S--- 73 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE---ST--------HCHHHHHHHHHHHHHSSS-EEEETSTCCG--------
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECC--CC--------CccchHHHHHHHHhcCCCCEEEeCCChhhc---C---
Confidence 5668899999999999999999999999993 21 112244445555555889987775443211 1
Q ss_pred CCCCccceEEEEecCCcC--------hHHHHHHHHHHh
Q 035624 626 SSADSFSKVALLFLGGND--------DREALTLAKRMG 655 (775)
Q Consensus 626 ~~~~~~~~i~~~f~gg~d--------dreAl~~a~rma 655 (775)
+. ...++++..=..+ .++|....+++.
T Consensus 74 --~~-aDail~~svlNs~n~~~iig~~~~aa~~~~~~~ 108 (230)
T PF01884_consen 74 --PG-ADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLG 108 (230)
T ss_dssp --TT-SSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHH
T ss_pred --cC-CCEEEEEEEecCCCcchHhhHHHHHHHHHHhhc
Confidence 11 3344444443222 366777777776
No 187
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=38.31 E-value=93 Score=30.03 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=46.9
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEEEeecChhhHHHH
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEKHVVENGADTVEI 712 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e~~V~~g~~i~~~ 712 (775)
++++.+-||.|.--++.++++. +-+++.+++..... . ..+.+..+++.+++. .. .+... ++. ...+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~--~-~~~~~~~~~~~~~~g--~~-~~~~~--~~~-~~~~~ 67 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQR--H-AKEEEAAKLIAEKLG--PS-TYVPA--RNL-IFLSI 67 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCC--C-hhHHHHHHHHHHHHC--CC-EEEeC--cCH-HHHHH
Confidence 4789999999999988888763 34677777754211 1 112233333334433 12 22111 111 12222
Q ss_pred HHhc--ccCCcEEEEcccCCC
Q 035624 713 VHSM--VNQYDLIIVGRRHNL 731 (775)
Q Consensus 713 i~~~--~~~~DLiivG~~~~~ 731 (775)
+.+. ..++|-++.|.+.+.
T Consensus 68 l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 68 AAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHCCCCEEEEeeccCc
Confidence 3222 157999999999754
No 188
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=37.43 E-value=4.4e+02 Score=26.77 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=24.4
Q ss_pred hHHHHHHHHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEc
Q 035624 525 ENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILS 575 (775)
Q Consensus 525 ~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg 575 (775)
.++.+.+++..++..-.+.+.. . ....+..+++.+...++++|-||+-
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~--~-~~~~~~~~~~i~~l~~~~vdgiii~ 62 (264)
T cd06274 15 ARIAKRLEALARERGYQLLIAC--S-DDDPETERETVETLIARQVDALIVA 62 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe--C-CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4455556555444322333332 1 1111223466777778899976654
No 189
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.20 E-value=2.2e+02 Score=29.18 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=37.3
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEc-cccccccCCCccccchhhHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILS-FHRTWYIDGSLESDDQSVRNLNLR 599 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg-~h~~~~~d~~~~~~~~~~~~~~~k 599 (775)
+..++.+.+++..++. +..+.. ..+ .++.. .+..+....+++|-||+. .+.. +. .. +
T Consensus 13 ~~~~~~~gi~~~~~~~--~~~~~~--~~~-~~~~~~~~~~i~~l~~~~~dgiii~~~~~~----------~~----~~-~ 72 (265)
T cd06285 13 VMATMYEGIEEAAAER--GYSTFV--ANT-GDNPDAQRRAIEMLLDRRVDGLILGDARSD----------DH----FL-D 72 (265)
T ss_pred cHHHHHHHHHHHHHHC--CCEEEE--EeC-CCCHHHHHHHHHHHHHcCCCEEEEecCCCC----------hH----HH-H
Confidence 4455666666655442 233321 222 22322 355666778899966653 2211 10 12 2
Q ss_pred HhccCCCceEEEEcCC
Q 035624 600 ILEKAPCSVGILIDHG 615 (775)
Q Consensus 600 Vl~~Apc~Vgilvdr~ 615 (775)
-+++++.|| |++||.
T Consensus 73 ~~~~~~iPv-v~~~~~ 87 (265)
T cd06285 73 ELTRRGVPF-VLVLRH 87 (265)
T ss_pred HHHHcCCCE-EEEccC
Confidence 356678998 777775
No 190
>PRK14561 hypothetical protein; Provisional
Probab=36.88 E-value=65 Score=32.28 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=22.5
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeee
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIA 669 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~ 669 (775)
++++.+-||.|.--.+..+.+. . .++.+++..
T Consensus 2 kV~ValSGG~DSslll~~l~~~---~--~v~a~t~~~ 33 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF---Y--DVELVTVNF 33 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc---C--CeEEEEEec
Confidence 6889999999988877766554 2 345566543
No 191
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.84 E-value=1.9e+02 Score=30.96 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccce
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSK 633 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~ 633 (775)
..+...+++.|++.+...||.-+.+.-...+ -..+........+++++||.+=-|++.++.....-. ...+.+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai--~~GftS 100 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCI--RNGFTS 100 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HcCCCe
Confidence 5788999999999999999998776533222 124677778888999999999889985433211000 011334
Q ss_pred EEEEecCCc-ChHHHHHHHHHH---hhCCCeEE
Q 035624 634 VALLFLGGN-DDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 634 i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l 662 (775)
+-|+|.. +..|-++..++. |...|+++
T Consensus 101 --VM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 101 --VMIDGSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred --EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 5667743 567777766655 44556555
No 192
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=36.29 E-value=1.4e+02 Score=26.14 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=44.8
Q ss_pred EEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEEEeecChhhHHHHH
Q 035624 634 VALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEKHVVENGADTVEIV 713 (775)
Q Consensus 634 i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e~~V~~g~~i~~~i 713 (775)
+++.+-||.|.--.+..+++... ++..++++..-.. +.+..+++.++.+. .-+.+.+
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~r~--------------~~~~~~a 57 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHGISP-----RLEDAKEIAKEARE--------------EAAKRIA 57 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCCCcc-----cHHHHHHHHHHHHH--------------HHHHHHH
Confidence 46889999999998888888643 6888888754321 22233333333111 1133334
Q ss_pred HhcccCCcEEEEcccCCC
Q 035624 714 HSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 714 ~~~~~~~DLiivG~~~~~ 731 (775)
++ .++|-++.|.+.+.
T Consensus 58 ~~--~g~~~i~~g~~~~D 73 (103)
T cd01986 58 KE--KGAETIATGTRRDD 73 (103)
T ss_pred HH--cCCCEEEEcCCcch
Confidence 44 56888888888653
No 193
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.86 E-value=2.1e+02 Score=30.64 Aligned_cols=115 Identities=9% Similarity=0.103 Sum_probs=71.1
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSV 621 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~ 621 (775)
.-|-.|... ...+.+.|++.|++.++..||.-+.+.-..-+ -..+........+++++||.+=-|++.++...
T Consensus 18 yaV~AfN~~--n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i 90 (284)
T PRK12737 18 YAVPAFNIH--NLETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHEDLDDI 90 (284)
T ss_pred ceEEEEEeC--CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 344444443 25789999999999999999988765533222 12367778889999999999998998543321
Q ss_pred cccCCCCCccceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 622 THMDSSADSFSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 622 ~~~~~~~~~~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
..-. ...+.+ +-++|.. +..|.++..+++ |...|+.+ .+=++
T Consensus 91 ~~ai--~~GftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 91 KKKV--RAGIRS--VMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred HHHH--HcCCCe--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 1000 011334 6667743 456666665554 44455544 44454
No 194
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.30 E-value=2.5e+02 Score=30.78 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=67.3
Q ss_pred CCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeE-E
Q 035624 584 GSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVR-L 662 (775)
Q Consensus 584 ~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~-l 662 (775)
|.++.+-+...++.+.|-+..+.++-|-+ |-.. .+ ...||.+-.|++++++++.+...+. +
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~i-Rl~~----------~~-------~~~~G~~~~e~~~~~~~l~~~G~vd~i 246 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVGI-RISG----------DE-------DTEGGLSPDEALEIAARLAAEGLIDYV 246 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEEE-Eeeh----------hh-------ccCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 44554445677778888777766543332 3210 01 0236788899999999998865322 3
Q ss_pred EEEE--eeecC--CC--CCCchhhhhHHHHHHHhhcC-C-CeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCC
Q 035624 663 TVVH--FIAAS--DD--GDVDWETILDSEVLRDIKKT-E-CMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 663 tvl~--~~~~~--~~--~~~~~~~~~d~~~~~~~~~~-~-~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~ 731 (775)
+|-. ...+. .. ...........++.+.+++. + .+..+- .+.+-++..+.+++ ..+|++.+||.-=.
T Consensus 247 ~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G-~i~~~~~~~~~l~~--~~~D~V~~gR~~la 320 (343)
T cd04734 247 NVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAG-RIRDPAEAEQALAA--GHADMVGMTRAHIA 320 (343)
T ss_pred EeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeC-CCCCHHHHHHHHHc--CCCCeeeecHHhHh
Confidence 3310 00000 00 00001111223455555543 2 344432 23345667777777 78999999998533
No 195
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=34.93 E-value=6.9e+02 Score=27.94 Aligned_cols=24 Identities=13% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCChhHHHHhhhcee
Q 035624 62 VFHSVLKRFGIPIFISQIFVSILT 85 (775)
Q Consensus 62 ~~~~ll~rl~~P~iv~~IlaGill 85 (775)
+..++.++.++|.-+.-+++++++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666666788777777766655
No 196
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.91 E-value=2.3e+02 Score=30.28 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=71.5
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSV 621 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~ 621 (775)
.-|-.|... ...+.+.|++.|++.+...||.-+.+.-...+ ...+.....+..+++++||.+=-|++.++...
T Consensus 18 yaV~Afn~~--n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i 90 (281)
T PRK06806 18 YGVGAFSVA--NMEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKI 90 (281)
T ss_pred ceEEEEEeC--CHHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 344444443 35789999999999999999998765533211 12366777788999999999988998543321
Q ss_pred cccCCCCCccceEEEEecC-CcChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 622 THMDSSADSFSKVALLFLG-GNDDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 622 ~~~~~~~~~~~~i~~~f~g-g~ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
..- -+.-.+. +-+.+ ..+++|-++.++++ ++..|+.+ .+.|+
T Consensus 91 ~~A---l~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 91 KEA---LEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHH---HHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 100 0001122 33344 45678888877766 45566554 45555
No 197
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=34.65 E-value=3.9e+02 Score=24.98 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCh---hHHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHH
Q 035624 46 TPRIMLLLATMFTISQVFHSVLKRFGIPI---FISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQ 122 (775)
Q Consensus 46 ~~~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~ 122 (775)
...++.|+++++.+..+..++.+-+++|- ++|.++-=.++ . ++.++.. .-....-..++++++.|+==.
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL---~---~~iv~l~--wv~~~a~~Ll~~m~llFVPa~ 75 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLL---A---LKIVKLE--WVERGATFLLRNMALLFVPAG 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH---H---hCCccHH--HHHHHHHHHHHHHHHHHhcch
Confidence 34678899999998888888888788763 34443311111 1 3333210 001112223444444443334
Q ss_pred HhcccChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 035624 123 SGVKMDLSMVSKVGRKALYIGILSVISPLVALI 155 (775)
Q Consensus 123 ~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~ 155 (775)
+|+=-..+.+++.+-+.+...+.+.++.+..+.
T Consensus 76 VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg 108 (128)
T COG1380 76 VGVMNYFDLLAADGLPILVVIIISTLLVLLVTG 108 (128)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555444556666776666665555555554433
No 198
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=34.59 E-value=5.3e+02 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH-hhccHHHHHHHHhhcc
Q 035624 114 IGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLY-YVTSFPVIFCLLTHLK 191 (775)
Q Consensus 114 igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~l-s~Ts~~vv~~iL~el~ 191 (775)
+|-...-|-.-+--+.+.+||+++........+.++.+..+..++++++.+.. +..+.+- |+|. |+...+-+++|
T Consensus 65 LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~Sl~pkSvTt-piAm~vs~~iG 140 (226)
T TIGR00659 65 LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIASLLPKSVTT-PIAMHVSEMIG 140 (226)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHHhhhHHhhH-HHHHHHHHHhC
Confidence 34444455566666788899999988887788888888888888888876532 2222211 3333 66666655554
No 199
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=34.33 E-value=1.5e+02 Score=31.95 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=49.7
Q ss_pred HHHHhhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 035624 76 ISQIFVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALI 155 (775)
Q Consensus 76 v~~IlaGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~ 155 (775)
+-.++.|+++|+.- . +-.+.+..-..+-+.|+-|-.|-.+|++.+.+.+-.-..+++..++++....+
T Consensus 175 llP~iiG~iLGNLD-----~-------~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 175 LLPIIIGMILGNLD-----P-------DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHHhcCC-----H-------HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 33456888877632 1 12233333334446688899999999999999988888888877776666666
Q ss_pred HHHHhh
Q 035624 156 PTFMVP 161 (775)
Q Consensus 156 ~~~~~l 161 (775)
.+-.++
T Consensus 243 ~~dr~i 248 (314)
T PF03812_consen 243 LADRLI 248 (314)
T ss_pred HHHHHH
Confidence 665554
No 200
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.10 E-value=2.6e+02 Score=28.54 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=36.6
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCc--HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLM--HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRI 600 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m--~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kV 600 (775)
+...+.+.+++..++....+.+.. + .++. ..++.+...++++|-+|+-.... + + ... +-
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~------~----~~~-~~ 73 (268)
T cd06298 13 YFAELARGIDDIATMYKYNIILSN----S-DNDKEKELKVLNNLLAKQVDGIIFMGGKI---S------E----EHR-EE 73 (268)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEe----C-CCCHHHHHHHHHHHHHhcCCEEEEeCCCC---c------H----HHH-HH
Confidence 445677777776554322333332 1 1222 23444445678899888632110 0 0 112 33
Q ss_pred hccCCCceEEEEcCC
Q 035624 601 LEKAPCSVGILIDHG 615 (775)
Q Consensus 601 l~~Apc~Vgilvdr~ 615 (775)
++++..|| |++|+.
T Consensus 74 l~~~~ipv-V~~~~~ 87 (268)
T cd06298 74 FKRSPTPV-VLAGSV 87 (268)
T ss_pred HhcCCCCE-EEEccc
Confidence 56677888 666764
No 201
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=33.95 E-value=5.8e+02 Score=28.47 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=52.3
Q ss_pred hhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHh---h
Q 035624 319 FDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMH-KNDAMALALIMN---A 392 (775)
Q Consensus 319 l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~-~~~~~~lg~~l~---~ 392 (775)
+.+.++..++|+-....=++.|+ +.. .. ...+...+++.++-.+++.+..+.++.. -.|...++-.+. .
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~---~g--~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyi 126 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILR---LG--GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYI 126 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHH---hh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhccc
Confidence 44455677778777777778887 332 12 2234555555666677777666666543 234443333232 3
Q ss_pred hhhHHHHHHhhhccCCCCChhhHHHHHH
Q 035624 393 KGIVEMAFYTFASDGRYVPPNMFRFMLG 420 (775)
Q Consensus 393 rG~v~l~~~~~~~~~~ii~~~~~~~lv~ 420 (775)
-|.+-.+....+++. +++.++..+.
T Consensus 127 GGs~N~~Av~~al~~---~~~~~~a~~a 151 (378)
T PF05684_consen 127 GGSVNFVAVAEALGV---SDSLFAAALA 151 (378)
T ss_pred CchhHHHHHHHHHCC---CHHHHHHHHH
Confidence 476666666655543 4566665433
No 202
>PRK06801 hypothetical protein; Provisional
Probab=33.20 E-value=3.4e+02 Score=29.05 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=71.2
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSV 621 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~ 621 (775)
.-|-.|-.. ...+...|++.|++.++.+||.-+.+.-...+ -..+........++++.||.+=-|++..+...
T Consensus 18 yaV~Afn~~--n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i 90 (286)
T PRK06801 18 YALGAFNVL--DSHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGLHFEAV 90 (286)
T ss_pred ceEEEEeeC--CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 344444443 25788999999999999999998876543222 13477788899999999999988998433311
Q ss_pred cccCCCCCccceEEEEecC-CcChHHHHHHHHHH---hhCCCeEE
Q 035624 622 THMDSSADSFSKVALLFLG-GNDDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 622 ~~~~~~~~~~~~i~~~f~g-g~ddreAl~~a~rm---a~~~~~~l 662 (775)
..-. ...... +-+.| ..+.+|.++.++++ |+..|+.+
T Consensus 91 ~~Ai--~~GftS--Vm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 91 VRAL--RLGFSS--VMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHH--HhCCcE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1000 001223 44466 33568888877666 66677655
No 203
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=32.94 E-value=2.9e+02 Score=30.66 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=30.3
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
..++++++-||.|.--|+.++.+- |.+++.++|+.+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 569999999999999888877552 778999999854
No 204
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=31.63 E-value=1.7e+02 Score=29.39 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=47.3
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC---CchhhhhHHHHHHHhhcCCCeEEEEE--e-ecCh
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGD---VDWETILDSEVLRDIKKTECMRYEKH--V-VENG 706 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~v~y~e~--~-V~~g 706 (775)
++++.|-||.|.--|+..+.+. |-++..+.+..+..... ...+.+..+...+.+... ....+. . .+.-
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip--l~~i~~~~~~e~~~ 74 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP--LIRIEISGEEEDEV 74 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc--EEEEeCCCCchHHH
Confidence 4679999999999999988882 44555555554432211 011222223333333321 111110 0 1112
Q ss_pred hhHHHHHHhccc-CCcEEEEcccC
Q 035624 707 ADTVEIVHSMVN-QYDLIIVGRRH 729 (775)
Q Consensus 707 ~~i~~~i~~~~~-~~DLiivG~~~ 729 (775)
.+..+.+++... ++|-++-|...
T Consensus 75 ~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 75 EDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEECccc
Confidence 345555555322 48999999884
No 205
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=31.55 E-value=7.1e+02 Score=27.75 Aligned_cols=109 Identities=15% Similarity=-0.070 Sum_probs=61.3
Q ss_pred HHHHHhhCCChhHHHH-hhhceeccccchhccccccccCcccHHHHHHHHHHHHHHHHHHHhcc-cChHHHHhhhhhHHH
Q 035624 64 HSVLKRFGIPIFISQI-FVSILTFDDFFLVIKMENKIITPEHVQLIGSMGNIGIALFIFQSGVK-MDLSMVSKVGRKALY 141 (775)
Q Consensus 64 ~~ll~rl~~P~iv~~I-laGillGP~~~~~lg~~~~~~f~~~~~~l~~l~~igl~~llF~~Gle-~d~~~lk~~~~~~~~ 141 (775)
+.+-|.+++|.-+..+ +.-.++-- .|..++.+=......-+.++.=-.-.+|+-+|+. +|++++-+...-...
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk~-----~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~v 355 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILKA-----ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNV 355 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHH-----hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHH
Confidence 3344556689666333 32222221 3443320000123344455554555688999997 999998877665555
Q ss_pred HHHHHHHHHH-HHHHHHHHhhcCChh-HHHHHHHHHhh
Q 035624 142 IGILSVISPL-VALIPTFMVPTGTGP-SGFFITPLYYV 177 (775)
Q Consensus 142 i~~~~~l~p~-~~~~~~~~~l~~~~~-~~l~ig~~ls~ 177 (775)
+-..++++.. ..+++.+++++.... .++.-|++.+.
T Consensus 356 ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~ 393 (438)
T COG3493 356 IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcC
Confidence 5555555554 456777888876655 44444577764
No 206
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.89 E-value=2.7e+02 Score=29.75 Aligned_cols=105 Identities=9% Similarity=0.084 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccce
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSK 633 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~ 633 (775)
..+.+.|++.|++.++..||.-+.+.-..-+ ...+........++++.||.+=-|++.++.....-. ...+.+
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai--~~GFtS 98 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKV--HAGVRS 98 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HcCCCE
Confidence 5789999999999999999998776543221 123677888999999999999989985443221000 011334
Q ss_pred EEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 634 VALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 634 i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
+-|+|.. +..|.++..++. |...|+.+ .+=++
T Consensus 99 --VM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 136 (282)
T TIGR01858 99 --AMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRL 136 (282)
T ss_pred --EeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEec
Confidence 5667744 456666665544 44456544 44444
No 207
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.73 E-value=2.9e+02 Score=29.53 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=67.6
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccce
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSK 633 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~ 633 (775)
..+.+.|++.|++.++..||.-..+.-..-+ ...+........++++.||.+=-|++.++.....-. ...+.+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai--~~GFtS 100 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIA-----LEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKV--HAGVRS 100 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HcCCCe
Confidence 5789999999999999999997665432211 134677788889999999999999985443221000 011334
Q ss_pred EEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 634 VALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 634 i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
+-|+|.. +..|.++..++. |...|+.+ .+=++
T Consensus 101 --VM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~i 138 (286)
T PRK12738 101 --AMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRL 138 (286)
T ss_pred --EeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 5667743 566777766555 44455444 44454
No 208
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=30.70 E-value=5.8e+02 Score=28.40 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcccChHHHHhhhhhHHHHHH
Q 035624 114 IGIALFIFQSGVKMDLSMVSKVGRKALYIGI 144 (775)
Q Consensus 114 igl~~llF~~Gle~d~~~lk~~~~~~~~i~~ 144 (775)
-|..+.++-.|.+.|++.+++..++...+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l 147 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL 147 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee
Confidence 5677889999999999999999888765543
No 209
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=30.28 E-value=99 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=29.1
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
.+++++.|-||.|.--++.++.+. +.++..++++.+
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 468999999999999999888775 556777887654
No 210
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=30.21 E-value=4.1e+02 Score=28.87 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhcccc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hhhhhHHHH
Q 035624 326 FFLPIFVTTSAMRIHD---LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDAMALALIM---NAKGIVEMA 399 (775)
Q Consensus 326 ~f~PifF~~~G~~id~---l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l---~~rG~v~l~ 399 (775)
.++.+.|...|+++.. ... .+.| ...++..+..++.=++.++..++.+++|. .++.|+++ +|-|..+.+
T Consensus 42 ~~l~lImf~mGl~Ls~~d~~~~--~~~p-~~vligl~~qfvlmPlla~~~~~~~~l~~--~l~~Gl~ll~~~Pggv~S~~ 116 (319)
T COG0385 42 IALALIMFGMGLTLSREDFLAG--LKHP-RLVLIGLAAQFVLMPLLALLLAKLFPLPP--ELAVGLLLLGCCPGGVASNA 116 (319)
T ss_pred HHHHHHHHhcCCCCCHHHHHHh--hcch-HHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHhHHheeeCCCchhHHH
Confidence 4455566666888775 222 2344 33445555566667788888888877554 56677654 677888866
Q ss_pred HHhhhccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 035624 400 FYTFASDGRYVPPNMFRFMLGIIIVMGSIVPIFVRKLY 437 (775)
Q Consensus 400 ~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~~l~~~l~ 437 (775)
+...+.-+ . .-.-....++.+++-+++|.++.++.
T Consensus 117 ~t~lAkGn--V-alsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 117 MTYLAKGN--V-ALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHHhcCc--H-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665422 1 11122334455555566677777654
No 211
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=29.67 E-value=2.4e+02 Score=28.97 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=31.9
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDG 674 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~ 674 (775)
..++++.|.||+|+--.|.++.+..+ + .+.++++.+-..+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~-~--~i~vv~vDTg~~fp 65 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE-P--MIPVIFIDTLYHFP 65 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC-C--CCCEEEEeCCCCCH
Confidence 34789999999999999999988762 2 37788887765554
No 212
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=29.24 E-value=6.1e+02 Score=25.57 Aligned_cols=141 Identities=19% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCcEEEEcc-ccc-----cccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCcc
Q 035624 558 DDICTLALDKLASLVILSF-HRT-----WYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSF 631 (775)
Q Consensus 558 ~~I~~~a~e~~adlIImg~-h~~-----~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~ 631 (775)
.+.++.+.+..+|-|=+-. |.. .+..+.++.+-....+..+.|-+..+.||.+ +-|.
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v-k~r~---------------- 132 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV-KIRL---------------- 132 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE-EEee----------------
Confidence 3344444555677775432 211 1112223334445667777776666655533 1122
Q ss_pred ceEEEEecCCcCh-HHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC-CCeEEEEEeecChhhH
Q 035624 632 SKVALLFLGGNDD-REALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT-ECMRYEKHVVENGADT 709 (775)
Q Consensus 632 ~~i~~~f~gg~dd-reAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~v~y~e~~V~~g~~i 709 (775)
|.++ .++.++++++.+..=..+++ +-.+..... ....+-+.++.++.. +.-..-.-.+.+.+|.
T Consensus 133 ---------~~~~~~~~~~~~~~l~~~Gvd~i~v-~~~~~~~~~----~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 133 ---------GWDDEEETLELAKALEDAGASALTV-HGRTREQRY----SGPADWDYIAEIKEAVSIPVIANGDIFSLEDA 198 (231)
T ss_pred ---------ccCCchHHHHHHHHHHHhCCCEEEE-CCCCHHHcC----CCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence 1122 47888888887653223332 111111100 011233455666554 3333333455566777
Q ss_pred HHHHHhcccCCcEEEEcccCCC
Q 035624 710 VEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 710 ~~~i~~~~~~~DLiivG~~~~~ 731 (775)
.+.++. ..+|.+++||.--.
T Consensus 199 ~~~l~~--~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQ--TGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHh--cCCCEEEEcHHhHh
Confidence 777776 68999999998533
No 213
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=29.21 E-value=5.7e+02 Score=27.66 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc
Q 035624 295 VAGLYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD 341 (775)
Q Consensus 295 ~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~ 341 (775)
++.+.++|...|.-......+. .|.. ....+.+.|...|++++.
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~ 50 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPT 50 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCH
Confidence 4566777888887543322221 1222 233466777778999987
No 214
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=29.11 E-value=1.1e+02 Score=29.41 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=25.1
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
|+++.|.||+|..-.+.++.+..... +++++.+-
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg 34 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG 34 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC
Confidence 57899999999999999998888774 67766553
No 215
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.10 E-value=3.2e+02 Score=29.05 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred EEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCccccc
Q 035624 543 SINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVT 622 (775)
Q Consensus 543 ~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~ 622 (775)
-|-.+.... ..+.+.+.+.|++.+..+||.-+.+.-...+ -..+.......-++++.||.+=-|++.++....
T Consensus 14 aV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~ 86 (276)
T cd00947 14 AVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSSFELIK 86 (276)
T ss_pred eEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Confidence 344443432 4789999999999999999988766533222 134777788889999999999999985433211
Q ss_pred ccCCCCCccceEEEEecC-CcChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 623 HMDSSADSFSKVALLFLG-GNDDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 623 ~~~~~~~~~~~i~~~f~g-g~ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
.-. ...+.+ +-|+| .-+..|.++..++. |...|+.+ .+=++
T Consensus 87 ~ai--~~GftS--VMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i 133 (276)
T cd00947 87 RAI--RAGFSS--VMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRI 133 (276)
T ss_pred HHH--HhCCCE--EEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeee
Confidence 000 011334 55666 34567777776655 44455544 44444
No 216
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=28.76 E-value=1.9e+02 Score=31.36 Aligned_cols=36 Identities=36% Similarity=0.357 Sum_probs=28.7
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
+++++.+-||.|.--++.++.+. .|-+++.+++...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 58999999999998888877653 3457899998754
No 217
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=28.63 E-value=8.1e+02 Score=26.87 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhccCCCCch-----hHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHH
Q 035624 293 LTVAGLYIVGLAVPRGPPLG-----SALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVK 365 (775)
Q Consensus 293 ~~~lgaf~aGl~~~~~~~~~-----~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K 365 (775)
++.+=+.++|+++.-.++.. +.+.+-++.+ .....|+-.+.+|..+.. ... ...+ ......+++.++.-
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~--~~~~-~~~~~~~~~rlii~ 319 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKS--ALGW-KPSIIAVLVRLIIL 319 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCccc--chhh-HHHHHHHHHHHHHH
Confidence 34444555555555443222 4555556665 678899999999998875 221 1121 22233455666666
Q ss_pred HHHHHHHHHHhcCChH
Q 035624 366 FGTCSLLLLYWKMHKN 381 (775)
Q Consensus 366 ~l~~~l~~~~~~~~~~ 381 (775)
++.++...+..+++..
T Consensus 320 P~i~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 320 PLIGIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHHHHCCCHH
Confidence 7777777777776554
No 218
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=28.40 E-value=3.1e+02 Score=30.22 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred EEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcCCCCcccc
Q 035624 543 SINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDHGNLKRSV 621 (775)
Q Consensus 543 ~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr~~~~~~~ 621 (775)
-|-.|... ...+...|++.|++.+..+|+.-+.++-..-+ ...+........++++ +||.+=-|++.++...
T Consensus 17 AV~AfN~~--n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i 89 (347)
T TIGR01521 17 GVPAFNVN--NMEQMRAIMEAADKTDSPVILQASRGARSYAG-----APFLRHLILAAIEEYPHIPVVMHQDHGNSPATC 89 (347)
T ss_pred eEEEEeeC--CHHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHH
Confidence 34444443 25789999999999999999999876543222 1347778888889997 9999999998544322
Q ss_pred cccCCCCCccceEEEEecCCc--------ChHHHHHHHHHH---hhCCCeEE
Q 035624 622 THMDSSADSFSKVALLFLGGN--------DDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 622 ~~~~~~~~~~~~i~~~f~gg~--------ddreAl~~a~rm---a~~~~~~l 662 (775)
..-. ..-+.+ +-++|.. +-.|.++..++. |...|+.+
T Consensus 90 ~~Ai--~~GFtS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 90 QRAI--QLGFTS--VMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred HHHH--HcCCCE--EeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1000 011334 6677764 456667666554 45555554
No 219
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=28.24 E-value=6.1e+02 Score=25.26 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035624 244 FIVMVVVRPAMLLIVRM 260 (775)
Q Consensus 244 ~~~~~v~r~~~~~l~~~ 260 (775)
....++.+|+..|+.+|
T Consensus 173 ~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 173 YSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 34567778888777654
No 220
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.07 E-value=82 Score=34.11 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=39.4
Q ss_pred cceEEEEecC-CcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEEEeecChhhH
Q 035624 631 FSKVALLFLG-GNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEKHVVENGADT 709 (775)
Q Consensus 631 ~~~i~~~f~g-g~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e~~V~~g~~i 709 (775)
+++|++++.- |+--+.-++.+.+ +.|.+++++....-+.+ +...+|
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p~~vQG~-------------------------------~A~~~I 60 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYPASVQGE-------------------------------GAAASI 60 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEecccccc-------------------------------chHHHH
Confidence 6788777765 4445555666665 56666666555322211 112234
Q ss_pred HHHHHhcc-----cCCcEEEEcccCCC
Q 035624 710 VEIVHSMV-----NQYDLIIVGRRHNL 731 (775)
Q Consensus 710 ~~~i~~~~-----~~~DLiivG~~~~~ 731 (775)
.++++... .+||+||++|+||-
T Consensus 61 ~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 61 VSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHhccccccccEEEEecCCCC
Confidence 44444432 36999999999984
No 221
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=28.02 E-value=3.4e+02 Score=29.33 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcCCCCccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDHGNLKRS 620 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr~~~~~~ 620 (775)
.-|-.|... .-.+.+.|++.|++.+..+||.-+.+....-+ ...+....+...++++ .||.+=-|++.++..
T Consensus 17 yaV~AfN~~--n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~ 89 (307)
T PRK05835 17 YGVGAFNFV--NFEMLNAIFEAGNEENSPLFIQASEGAIKYMG-----IDMAVGMVKIMCERYPHIPVALHLDHGTTFES 89 (307)
T ss_pred ceEEEEEEC--CHHHHHHHHHHHHHHCCCEEEEcCccHHhhCC-----hHHHHHHHHHHHHhcCCCeEEEECCCCCCHHH
Confidence 344444443 25789999999999999999998776533222 1246677788889998 999998899854432
Q ss_pred ccccCCCCCccceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 621 VTHMDSSADSFSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 621 ~~~~~~~~~~~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
...-. ...+.+ +-|+|.. +..|-++..++. |...|+.+ .+=++
T Consensus 90 i~~ai--~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 90 CEKAV--KAGFTS--VMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred HHHHH--HcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 21000 011334 6777755 556667665554 45556554 44444
No 222
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=27.91 E-value=1.7e+02 Score=30.93 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=59.6
Q ss_pred cCCcChHHHHHHHHHHhh-CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC-CC-eEEEEEeecChhhHHHHHHh
Q 035624 639 LGGNDDREALTLAKRMGR-DNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT-EC-MRYEKHVVENGADTVEIVHS 715 (775)
Q Consensus 639 ~gg~ddreAl~~a~rma~-~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~-v~y~e~~V~~g~~i~~~i~~ 715 (775)
.=.+.|+-|++.|.|+.+ ..+.+++++.+=++.. .+...+-+.-- ++ +...+.. ..+.|.....+-
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a----------~~~lr~aLAmGaDraili~d~~-~~~~d~~~ta~~ 102 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA----------EEALREALAMGADRAILITDRA-FAGADPLATAKA 102 (260)
T ss_pred ccChhhHHHHHHHHHhhccCCCceEEEEEecchhh----------HHHHHHHHhcCCCeEEEEeccc-ccCccHHHHHHH
Confidence 337889999999999999 7999999999854322 11111112211 22 2223222 234444444322
Q ss_pred cc-----cCCcEEEEcccCC-CCCccccc-cccCCCCCccccchhhh
Q 035624 716 MV-----NQYDLIIVGRRHN-LECPQTSC-LDQWSEFPELGVLGDLL 755 (775)
Q Consensus 716 ~~-----~~~DLiivG~~~~-~~~~~~~g-l~~w~e~~eLG~igd~l 755 (775)
++ .++|||+.|.... ..+-++-. |.+|-..|..+-+-++-
T Consensus 103 Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 103 LAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 21 4699999999863 23333222 23444447666655544
No 223
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=27.48 E-value=1.2e+03 Score=28.31 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHhhCCChhHHHHhhhceecccc
Q 035624 66 VLKRFGIPIFISQIFVSILTFDDF 89 (775)
Q Consensus 66 ll~rl~~P~iv~~IlaGillGP~~ 89 (775)
+...+|+|+++.-+++|..+|-++
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG 415 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAG 415 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998655
No 224
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=27.39 E-value=61 Score=33.23 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCh------hHHHHhhhceeccccchhcccccc-ccCcccHHHHHHHHHHHHHHHHHHHhcc
Q 035624 54 ATMFTISQVFHSVLKRFGIPI------FISQIFVSILTFDDFFLVIKMENK-IITPEHVQLIGSMGNIGIALFIFQSGVK 126 (775)
Q Consensus 54 ~lil~~~~~~~~ll~rl~~P~------iv~~IlaGillGP~~~~~lg~~~~-~~f~~~~~~l~~l~~igl~~llF~~Gle 126 (775)
.++...+...+++++-.+.|. .+|++++|.++-... ..+. .. ...+...+..+.+....-..|++
T Consensus 103 iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~-----~~~~~~~---~~iv~s~l~t~a~~I~~ik~gLg 174 (252)
T KOG3826|consen 103 IVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINIS-----FVNGAVC---APIVVSPLRTVALTIIKIKAGLG 174 (252)
T ss_pred ehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecc-----hhhhcee---eeeeehhhhhccchHHHHHhhhc
Confidence 345566666777777766666 999999997665433 1111 11 11233445667788888999999
Q ss_pred cChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHhhcc
Q 035624 127 MDLSMVSKVGRKALYIGILSVISPLVALIPTFMVP-TGTGPSGFFITPLYYVTS 179 (775)
Q Consensus 127 ~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l-~~~~~~~l~ig~~ls~Ts 179 (775)
++.+.+++..+-....++....+..-.....++++ ..+|.+++..|.+...-.
T Consensus 175 t~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~ 228 (252)
T KOG3826|consen 175 TLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSIL 228 (252)
T ss_pred ccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeee
Confidence 99999988877776655544444333445556554 567778888887776543
No 225
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.08 E-value=3.1e+02 Score=29.97 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=34.5
Q ss_pred HHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035624 116 IALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVP 161 (775)
Q Consensus 116 l~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l 161 (775)
+-+..|..|..+|.+.+.+.+-....+++...+++...++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 4456677899999988888888888777777777766666666655
No 226
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=26.87 E-value=2.8e+02 Score=25.96 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccC-CCceEEEEcCC
Q 035624 553 LDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKA-PCSVGILIDHG 615 (775)
Q Consensus 553 ~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~A-pc~Vgilvdr~ 615 (775)
.....+.+.+++++++++.||+|.-.+. ||.........+.+.+++-++. ++||-.+=+|.
T Consensus 36 ~~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 36 REKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp CCCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred CchHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 4688999999999999999999975443 4544334456788888888886 89985554554
No 227
>COG2035 Predicted membrane protein [Function unknown]
Probab=26.62 E-value=7.9e+02 Score=26.07 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceec--cccchhccccc
Q 035624 47 PRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTF--DDFFLVIKMEN 97 (775)
Q Consensus 47 ~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillG--P~~~~~lg~~~ 97 (775)
|+..=-+..++.+++++.++++. .|..+-...+|.++| |+. ++..+
T Consensus 60 ~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~l---lk~i~ 107 (276)
T COG2035 60 PLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSL---LKEIN 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 34444455577888888888887 555566678999998 444 55543
No 228
>PRK15445 arsenical pump membrane protein; Provisional
Probab=26.09 E-value=9.7e+02 Score=26.91 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHhhccccCChhHHHHHHHHHHH
Q 035624 180 FPVIFCLLTHLKILNSELGRLAQSSAIVA 208 (775)
Q Consensus 180 ~~vv~~iL~el~~~~s~~g~l~ls~a~i~ 208 (775)
.|++..+.+++|.-+++..-.+++.+...
T Consensus 118 ~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a 146 (427)
T PRK15445 118 TPIVLAMLLALGFSKKATLAFVMAAGFIA 146 (427)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHh
Confidence 47778888888865544333444444333
No 229
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=25.78 E-value=2.3e+02 Score=30.51 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=27.8
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
++++.|-||.|.--++.++.+. .|.+++.+++++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 4789999999999888888763 3457888998764
No 230
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.47 E-value=8.6e+02 Score=26.09 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC------chhhhhHHHHHHHhhcC-CC-eEEEEEeecChhhHHH
Q 035624 640 GGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDV------DWETILDSEVLRDIKKT-EC-MRYEKHVVENGADTVE 711 (775)
Q Consensus 640 gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~------~~~~~~d~~~~~~~~~~-~~-v~y~e~~V~~g~~i~~ 711 (775)
+|.+..|++++++++.+.. +..+++......... ......+-++++.++.. +. +... -.+.+.++..+
T Consensus 223 ~g~~~~e~~~la~~l~~~G---~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~-Ggi~t~~~a~~ 298 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAG---VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV-GGIRDPEVAEE 298 (327)
T ss_pred CCCCHHHHHHHHHHHHHcC---CCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe-CCCCCHHHHHH
Confidence 4667788999999997653 334443322110000 01112333455666543 32 3333 34445666777
Q ss_pred HHHhcccCCcEEEEcccC
Q 035624 712 IVHSMVNQYDLIIVGRRH 729 (775)
Q Consensus 712 ~i~~~~~~~DLiivG~~~ 729 (775)
.+++ ..+|++.+||.-
T Consensus 299 ~l~~--g~aD~V~igR~~ 314 (327)
T cd02803 299 ILAE--GKADLVALGRAL 314 (327)
T ss_pred HHHC--CCCCeeeecHHH
Confidence 7776 689999999985
No 231
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.35 E-value=6.5e+02 Score=25.64 Aligned_cols=75 Identities=19% Similarity=0.123 Sum_probs=35.5
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRI 600 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kV 600 (775)
+...+.+.+++..++. +..+..+.. .++.. .+..+.+..+++|-||+....... .... -+.
T Consensus 13 ~~~~~~~~i~~~~~~~--g~~~~~~~~---~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~-----------~~~~-l~~ 75 (277)
T cd06319 13 FWQIMGRGVKSKAKAL--GYDAVELSA---ENSAKKELENLRTAIDKGVSGIIISPTNSSA-----------AVTL-LKL 75 (277)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEecC---CCCHHHHHHHHHHHHhcCCCEEEEcCCchhh-----------hHHH-HHH
Confidence 3455666666655442 233322111 12222 233444556889988764321100 0111 234
Q ss_pred hccCCCceEEEEcCC
Q 035624 601 LEKAPCSVGILIDHG 615 (775)
Q Consensus 601 l~~Apc~Vgilvdr~ 615 (775)
++++.+|| |++|+.
T Consensus 76 ~~~~~ipv-V~~~~~ 89 (277)
T cd06319 76 AAQAKIPV-VIADIG 89 (277)
T ss_pred HHHCCCCE-EEEecC
Confidence 56778998 455664
No 232
>PRK10711 hypothetical protein; Provisional
Probab=25.23 E-value=7.8e+02 Score=25.49 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 035624 104 HVQLIGSMGNIGIALFIFQSGVKMDLSMVSKVGRKALYIGILSVISPLVALIPTFMVPTGT 164 (775)
Q Consensus 104 ~~~~l~~l~~igl~~llF~~Gle~d~~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~ 164 (775)
..+++..+ +|-.-..|-.-+--+.+.+||+++....--..|.++.++.+..++++++.+
T Consensus 58 g~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~ 116 (231)
T PRK10711 58 GSEVLNDL--LQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGAT 116 (231)
T ss_pred ccHHHHhh--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 34444443 444444555566667788888888887777777777777777778777754
No 233
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=24.99 E-value=4e+02 Score=29.34 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=70.4
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcCCCCccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDHGNLKRS 620 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr~~~~~~ 620 (775)
.-|-.|-.. .-.+...|++.|++.++.+|+.-+.++-..-+ ...+....+...++++ .||.+=-|++.++..
T Consensus 18 yaV~AfN~~--n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~ 90 (347)
T PRK13399 18 YGVPAFNVN--NMEQILAIMEAAEATDSPVILQASRGARKYAG-----DAMLRHMVLAAAEMYPDIPICLHQDHGNSPAT 90 (347)
T ss_pred ceEEEEEeC--CHHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHH
Confidence 344444343 35788999999999999999999876543322 1347778888888996 999999899855442
Q ss_pred ccccCCCCCccceEEEEecCCcC--------hHHHHHHHHHH---hhCCCeEE
Q 035624 621 VTHMDSSADSFSKVALLFLGGND--------DREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 621 ~~~~~~~~~~~~~i~~~f~gg~d--------dreAl~~a~rm---a~~~~~~l 662 (775)
...-. ..-+.+ +-|+|... ..|.++..++. |...|+.+
T Consensus 91 i~~Ai--~~GFtS--VMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 91 CQSAI--RSGFTS--VMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred HHHHH--hcCCCE--EEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 21000 011334 66677533 56777766655 44556555
No 234
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.90 E-value=8.7e+02 Score=25.98 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHhhcccc-cCCCchhhHHHHHHHHHHHHHHHH
Q 035624 325 GFFLPIFVTTSAMRIHD-LRPQSFNIFIVQNILTVAWIVLVK 365 (775)
Q Consensus 325 ~~f~PifF~~~G~~id~-l~~~~~~~~~~~~~~~~vv~~~~K 365 (775)
-+-+|+.|+.+.-+..+ ..+ ...| .++.++.+.+.+.|
T Consensus 230 ylTlPvLf~MiSnHyp~~y~~--~~nW-lil~li~~~g~~IR 268 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTYGH--PYNW-LILALIMLAGALIR 268 (300)
T ss_pred eeHHHHHHHHHhccCcccccc--chhH-HHHHHHHHHHHHHH
Confidence 46789999987666666 444 4576 33444444444444
No 235
>PRK00536 speE spermidine synthase; Provisional
Probab=24.46 E-value=78 Score=33.41 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=18.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEe
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHF 667 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~ 667 (775)
.+| |+.+||-| -..+++..+|+. +++++-+
T Consensus 73 pk~--VLIiGGGD----Gg~~REvLkh~~-~v~mVeI 102 (262)
T PRK00536 73 LKE--VLIVDGFD----LELAHQLFKYDT-HVDFVQA 102 (262)
T ss_pred CCe--EEEEcCCc----hHHHHHHHCcCC-eeEEEEC
Confidence 567 55667666 344555556665 7777765
No 236
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=24.26 E-value=2.5e+02 Score=27.88 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=22.0
Q ss_pred EEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 634 VALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 634 i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
|++.+.||.|.--++.++++... .+++.+++...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---DRVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---CcEEEEEeCCC
Confidence 46778888888777776655432 25666776543
No 237
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=24.07 E-value=32 Score=30.61 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=49.5
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEEEeecChhhHHHH
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEKHVVENGADTVEI 712 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e~~V~~g~~i~~~ 712 (775)
||+++=.||.+ =++|+++++.+.+. -+++.+-|.- +.+... .....++|-+++.++
T Consensus 2 kVLviGsGgRE----HAia~~l~~s~~v~--~v~~aPGN~G-------------~~~~~~-----~~~~~~~d~~~l~~~ 57 (100)
T PF02844_consen 2 KVLVIGSGGRE----HAIAWKLSQSPSVE--EVYVAPGNPG-------------TAELGK-----NVPIDITDPEELADF 57 (100)
T ss_dssp EEEEEESSHHH----HHHHHHHTTCTTEE--EEEEEE--TT-------------GGGTSE-----EE-S-TT-HHHHHHH
T ss_pred EEEEECCCHHH----HHHHHHHhcCCCCC--EEEEeCCCHH-------------HHhhce-----ecCCCCCCHHHHHHH
Confidence 56666666554 46788898888765 3333332211 111110 111256677789999
Q ss_pred HHhcccCCcEEEEcccCCCCCccccccccC
Q 035624 713 VHSMVNQYDLIIVGRRHNLECPQTSCLDQW 742 (775)
Q Consensus 713 i~~~~~~~DLiivG~~~~~~~~~~~gl~~w 742 (775)
+++ ++.||++||.- .|+..|+.|.
T Consensus 58 a~~--~~idlvvvGPE----~pL~~Gl~D~ 81 (100)
T PF02844_consen 58 AKE--NKIDLVVVGPE----APLVAGLADA 81 (100)
T ss_dssp HHH--TTESEEEESSH----HHHHTTHHHH
T ss_pred HHH--cCCCEEEECCh----HHHHHHHHHH
Confidence 999 99999999865 6899999765
No 238
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=23.61 E-value=5.5e+02 Score=28.31 Aligned_cols=180 Identities=10% Similarity=0.018 Sum_probs=96.8
Q ss_pred EEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEcccccccc-CCC-cc--------ccchhhHHHHHHHhccCCCceEEEE
Q 035624 543 SINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYI-DGS-LE--------SDDQSVRNLNLRILEKAPCSVGILI 612 (775)
Q Consensus 543 ~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~-d~~-~~--------~~~~~~~~~~~kVl~~Apc~Vgilv 612 (775)
-|-.|... ...+.+.|++.|++.+...||.-+.+.-.. .+. ++ .....+....+...+++++||.+=-
T Consensus 22 AV~AfNv~--n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHL 99 (350)
T PRK09197 22 ALPAVNVV--GTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHT 99 (350)
T ss_pred eEEEEEeC--CHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEEC
Confidence 34444343 357899999999999999999988764332 211 10 0001155667788899999999988
Q ss_pred cCCCC--cc-----------cccccCCCC-CccceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEeeecCC
Q 035624 613 DHGNL--KR-----------SVTHMDSSA-DSFSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHFIAASD 672 (775)
Q Consensus 613 dr~~~--~~-----------~~~~~~~~~-~~~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~~~~~~ 672 (775)
|++.. ++ .+.. .. .-+.+ +-|+|.. +..|.++..++. |...|+.+ .+=++--.++
T Consensus 100 DHg~~~~~~~i~~ai~~g~~~v~~---a~~~gftS--VMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed 174 (350)
T PRK09197 100 DHCAKKLLPWIDGLLDAGEKHFAA---GGKPLFSS--HMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEED 174 (350)
T ss_pred CCCCCcchHHHHHHHHhhHHHHHh---cCCCCcee--EEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcC
Confidence 99854 10 0000 00 00234 5667744 456667766554 55556554 4555522111
Q ss_pred CC--C-C-----chhhhhHHHHHHHhhc----C-------CCeE-EEEEeecChhhHHHHHHhccc--------CCcEEE
Q 035624 673 DG--D-V-----DWETILDSEVLRDIKK----T-------ECMR-YEKHVVENGADTVEIVHSMVN--------QYDLII 724 (775)
Q Consensus 673 ~~--~-~-----~~~~~~d~~~~~~~~~----~-------~~v~-y~e~~V~~g~~i~~~i~~~~~--------~~DLii 724 (775)
.. . . -.+-+.-.+|+++... . +.+. |.....+=--|.++-+++... +..|++
T Consensus 175 ~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVL 254 (350)
T PRK09197 175 GVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVF 254 (350)
T ss_pred CccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEE
Confidence 11 0 0 0122344556766543 2 1222 541112223456677766442 567887
Q ss_pred EcccC
Q 035624 725 VGRRH 729 (775)
Q Consensus 725 vG~~~ 729 (775)
=|.++
T Consensus 255 HGgSG 259 (350)
T PRK09197 255 HGGSG 259 (350)
T ss_pred eCCCC
Confidence 77664
No 239
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=23.49 E-value=5.2e+02 Score=25.95 Aligned_cols=47 Identities=9% Similarity=-0.088 Sum_probs=22.9
Q ss_pred chHHHHHHHHccccCCcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEc
Q 035624 524 SENVIVSFKKFGGLRWGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILS 575 (775)
Q Consensus 524 ~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg 575 (775)
..++.+.+++..++ .++.+..... ..+.. .+..+....+++|-+|+.
T Consensus 14 ~~~~~~~~~~~a~~--~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgvi~~ 62 (267)
T cd01536 14 WQAMNKGAEAAAKE--LGVELIVLDA---QNDVSKQIQQIEDLIAQGVDGIIIS 62 (267)
T ss_pred HHHHHHHHHHHHHh--cCceEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34566666665543 2334332211 11222 244444455689988765
No 240
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=23.39 E-value=9.8e+02 Score=26.03 Aligned_cols=78 Identities=10% Similarity=-0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHH---hhhhhHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHhHH
Q 035624 355 ILTVAWIVLVKFGTCSLLLLYW-KMHKNDAMALALIM---NAKGIVEMAFYTFASDGRYVPPNMFRFMLGIIIVMGSIVP 430 (775)
Q Consensus 355 ~~~~vv~~~~K~l~~~l~~~~~-~~~~~~~~~lg~~l---~~rG~v~l~~~~~~~~~~ii~~~~~~~lv~~~il~t~i~~ 430 (775)
.+..+.-++..++.++..++.+ +.+.. +.+|+++ +|-|..+.+...++. |-. +-.-+...+..+++.+++|
T Consensus 76 ~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lAk--Gnv-alsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 76 ILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLAK--GDP-EYTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHcC--CCH-HHHHHHHHHHHHHHHHHHH
Confidence 4444455566777777777654 65543 6677653 566666666555543 211 1112222344444455566
Q ss_pred HHHHhhc
Q 035624 431 IFVRKLY 437 (775)
Q Consensus 431 ~l~~~l~ 437 (775)
++...+.
T Consensus 151 ~l~~ll~ 157 (328)
T TIGR00832 151 PLAWLLL 157 (328)
T ss_pred HHHHHHH
Confidence 6666554
No 241
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=23.23 E-value=8e+02 Score=24.93 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCC--hhHHHHHHHHHhhccHHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHH
Q 035624 153 ALIPTFMVPTGT--GPSGFFITPLYYVTSFPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYAT 215 (775)
Q Consensus 153 ~~~~~~~~l~~~--~~~~l~ig~~ls~Ts~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~ 215 (775)
+|++...+++.. ....-++|...|.|+ ++..+-++.|. +.+..+......++.....++=
T Consensus 9 ~gYia~r~~G~r~Gl~ltg~~GGlvSSTA--~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R 70 (211)
T PF13194_consen 9 AGYIAVRLLGPRRGLLLTGLLGGLVSSTA--TTVSLARRSRE-NPELSRLLAAGILLASAVMFVR 70 (211)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHH--HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHH
Confidence 355555555543 224445555555554 44443344332 3445566666666665555433
No 242
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.08 E-value=4.5e+02 Score=28.10 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccce
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSK 633 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~ 633 (775)
..+...|++.|++.++.+||.-+.+.-..-+ -..+........++++.||.+=-|++.++.....-. ...+.+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai--~~GftS 100 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAG-----TEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKV--RSGVRS 100 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH--HcCCCE
Confidence 5789999999999999999998766433211 123677788889999999999889985443221000 011334
Q ss_pred EEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 634 VALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 634 i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
+-|+|.. +..|-++..++. |...|+.+ .+=++
T Consensus 101 --VM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 101 --VMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 6667743 456666655544 45556444 44454
No 243
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.03 E-value=7.4e+02 Score=27.33 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHhhcCCcEEEEcccccccc-CCC-cccc--------chhhHHHHHHHhccCCCceEEEEcCCCC------
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYI-DGS-LESD--------DQSVRNLNLRILEKAPCSVGILIDHGNL------ 617 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~-d~~-~~~~--------~~~~~~~~~kVl~~Apc~Vgilvdr~~~------ 617 (775)
..+.+.|++.|++.+...||.-+.+.... .+. ++.. ...+........+++++||++=-|++..
T Consensus 26 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~~~ 105 (345)
T cd00946 26 SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLLPWF 105 (345)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccchhh
Confidence 57889999999999999999988764322 111 1100 0146777788999999999998899854
Q ss_pred -------cccccccCCCCCccceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE--EEEEe
Q 035624 618 -------KRSVTHMDSSADSFSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL--TVVHF 667 (775)
Q Consensus 618 -------~~~~~~~~~~~~~~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l--tvl~~ 667 (775)
+..... --..-+.+ +-|+|.. +..|.++..++. |...|+.+ .+=++
T Consensus 106 ~~~~~a~~~~~~~--a~~~GftS--VMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~i 164 (345)
T cd00946 106 DGLLEADEEYFKQ--HGEPLFSS--HMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGIT 164 (345)
T ss_pred HHHHHHHHHHHHH--hccCCCce--EEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 110000 00001234 5677744 467777776655 44455544 44444
No 244
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=22.94 E-value=1.2e+02 Score=34.17 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=26.4
Q ss_pred eEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 633 KVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 633 ~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
++++.|.||.|..-++..+++- |.+++.++++..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 4788999999988887776542 678888888764
No 245
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.68 E-value=5e+02 Score=26.38 Aligned_cols=48 Identities=4% Similarity=0.003 Sum_probs=23.7
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcHH--HHHHHHhhcCCcEEEEc
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHD--DICTLALDKLASLVILS 575 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~--~I~~~a~e~~adlIImg 575 (775)
+...+.+.+++..++. +..+.- ..+ .++..+ ...+....+++|-||+-
T Consensus 13 ~~~~~~~gi~~~~~~~--g~~~~~--~~~-~~~~~~~~~~i~~l~~~~vdgiii~ 62 (269)
T cd06275 13 FFAEVVRGVEQYCYRQ--GYNLIL--CNT-EGDPERQRSYLRMLAQKRVDGLLVM 62 (269)
T ss_pred hHHHHHHHHHHHHHHc--CCEEEE--EeC-CCChHHHHHHHHHHHHcCCCEEEEe
Confidence 4466666776665542 233321 222 233332 33444556778876663
No 246
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=22.67 E-value=7.8e+02 Score=27.26 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=66.4
Q ss_pred CCcHHHHHHHHhhcCCcEEEEcccccccc-CCC-ccc---------cchhhHHHHHHHhccCCCceEEEEcCCCCccc--
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYI-DGS-LES---------DDQSVRNLNLRILEKAPCSVGILIDHGNLKRS-- 620 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~-d~~-~~~---------~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~-- 620 (775)
..+...+++.|++.+..+||.-+.+.-.. .|. ++. ....+.......-+++++||.+=-|++..+..
T Consensus 37 ~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~~~ 116 (357)
T TIGR01520 37 SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLLPW 116 (357)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchHH
Confidence 57899999999999999999998775432 210 100 11236777888999999999999999855421
Q ss_pred ccccCCCCC----------ccceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE
Q 035624 621 VTHMDSSAD----------SFSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 621 ~~~~~~~~~----------~~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l 662 (775)
...-. +.. .+.+ +-++|.. +-.|.++..++. |...|+.+
T Consensus 117 i~~ai-~ag~~~~~~~g~~gftS--VMiDgS~lpfeENI~~TrevVe~Ah~~GvsV 169 (357)
T TIGR01520 117 VDGLL-EAGEKYFSAHGKPLFSS--HMIDLSEEPIEENIEICVKYLKRMAKIKMWL 169 (357)
T ss_pred HHHHH-HhhhhhhhhcCCCCCce--EEeeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 00000 000 0334 5667744 456777776665 44456554
No 247
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.63 E-value=4.8e+02 Score=28.81 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 557 HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 557 ~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
-.+-.+.+++.+.|.|.|--.-. ..|| -...+++++..||||.++
T Consensus 36 g~~a~~~~~~~~PDVi~ld~emp-~mdg---------l~~l~~im~~~p~pVimv 80 (350)
T COG2201 36 GREAIDKVKKLKPDVITLDVEMP-VMDG---------LEALRKIMRLRPLPVIMV 80 (350)
T ss_pred HHHHHHHHHhcCCCEEEEecccc-cccH---------HHHHHHHhcCCCCcEEEE
Confidence 45666788899999999985321 1122 234679999999998766
No 248
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.82 E-value=3.9e+02 Score=29.31 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEE
Q 035624 584 GSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLT 663 (775)
Q Consensus 584 ~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~lt 663 (775)
|.++.+-+...++.+.|-+..+-||++=. +. .+ . ..||.+..|++++++++.+. + +.
T Consensus 186 GslenR~Rf~~eii~~ir~~~~~~v~vRi-s~------------~d-~------~~~G~~~~e~~~i~~~l~~~-g--vD 242 (337)
T PRK13523 186 GSPENRYRFLREIIDAVKEVWDGPLFVRI-SA------------SD-Y------HPGGLTVQDYVQYAKWMKEQ-G--VD 242 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEe-cc------------cc-c------CCCCCCHHHHHHHHHHHHHc-C--CC
Confidence 44555555677777887777666765421 11 01 0 13588889999999999764 3 34
Q ss_pred EEEeeecCCCC-CCchhhhhHHHHHHHhhcC-CC-eEEEEEeecChhhHHHHHHhcccCCcEEEEcccCC
Q 035624 664 VVHFIAASDDG-DVDWETILDSEVLRDIKKT-EC-MRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 664 vl~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-~~-v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~ 730 (775)
.+++-...... ..........++.++++.. +. +... -.+.+.++..+.+++ ..+|++.+||.--
T Consensus 243 ~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~-G~i~~~~~a~~~l~~--g~~D~V~~gR~~i 309 (337)
T PRK13523 243 LIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAV-GLITSGAQAEEILQN--NRADLIFIGRELL 309 (337)
T ss_pred EEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEe-CCCCCHHHHHHHHHc--CCCChHHhhHHHH
Confidence 44442211000 0000011123455666544 22 3332 234455667777777 7799999999853
No 249
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.64 E-value=4.1e+02 Score=27.18 Aligned_cols=47 Identities=13% Similarity=-0.046 Sum_probs=24.9
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCc--HHHHHHHHhhcCCcEEEE
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLM--HDDICTLALDKLASLVIL 574 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m--~~~I~~~a~e~~adlIIm 574 (775)
+..++.+.+++..++. +..+.- ..+ ..+. -....+...++++|-||+
T Consensus 13 ~~~~~~~~i~~~a~~~--g~~~~~--~~~-~~~~~~~~~~i~~l~~~~vdgii~ 61 (269)
T cd06281 13 LLAQLFSGAEDRLRAA--GYSLLI--ANS-LNDPERELEILRSFEQRRMDGIII 61 (269)
T ss_pred cHHHHHHHHHHHHHHc--CCEEEE--EeC-CCChHHHHHHHHHHHHcCCCEEEE
Confidence 4466777777766543 233322 111 2233 234555667778887765
No 250
>COG2431 Predicted membrane protein [Function unknown]
Probab=21.53 E-value=1e+03 Score=25.42 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhhhhHHHHHHh
Q 035624 358 VAWIVLVKFGTCSLLLLYWKMHKNDAMALALIMNAKGIVEMAFYT 402 (775)
Q Consensus 358 ~vv~~~~K~l~~~l~~~~~~~~~~~~~~lg~~l~~rG~v~l~~~~ 402 (775)
-++..++-.+++.+.+.+.++|+.+++.++..++--......+..
T Consensus 169 ~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 169 AFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 344456788889999999999999999998877766666555544
No 251
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=21.49 E-value=1.2e+03 Score=26.42 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHhhccccCChhHHHHHHHHHHHhHHHHHHH
Q 035624 180 FPVIFCLLTHLKILNSELGRLAQSSAIVADFLSYATV 216 (775)
Q Consensus 180 ~~vv~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l 216 (775)
.|++.++.++++.- .--..+++....|.-+....
T Consensus 121 tPivl~~~~~~~~~---~~p~l~~~~f~aN~gg~~t~ 154 (424)
T COG1055 121 TPIVLAVARALGVN---PVPFLIAEVFIANIGGLATP 154 (424)
T ss_pred hhHHHHHHHHcCCC---ccHHHHHHHHHHcccccccc
Confidence 47888888887753 33455677777777665543
No 252
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=21.44 E-value=1.7e+02 Score=26.46 Aligned_cols=51 Identities=14% Similarity=-0.043 Sum_probs=27.9
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhhhceeccc
Q 035624 38 EYKWLDYTTPRIMLLLATMFTISQVFHSVLKRFGIPIFISQIFVSILTFDD 88 (775)
Q Consensus 38 ~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGillGP~ 88 (775)
-..|+.+++|.-++.=.+..+-..++-..+....--.+.-.++.|++.||+
T Consensus 60 ~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 60 VRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred ecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 488999999875443322222111111122222223355568899999996
No 253
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=21.33 E-value=5.9e+02 Score=27.28 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=65.7
Q ss_pred CCcHHHHHHHHhhcCCcEEEEcccccccc-CCCccccchhhHHHHHHHhccC--CCceEEEEcCCCCcccccccCCCCCc
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYI-DGSLESDDQSVRNLNLRILEKA--PCSVGILIDHGNLKRSVTHMDSSADS 630 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~-d~~~~~~~~~~~~~~~kVl~~A--pc~Vgilvdr~~~~~~~~~~~~~~~~ 630 (775)
..+...|++.|++.++.+||.-+.+.-.. .+ -..+.......-+++ ..||.+=-|++.++.....-. ...
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g-----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai--~~G 100 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGAAKYIAG-----LGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAV--KAG 100 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcchhhccCC-----HHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHH--HcC
Confidence 57889999999999999999987665332 22 124777788888999 899999889985443211000 011
Q ss_pred cceEEEEecCCc-ChHHHHHHHHHH---hhCCCeEE
Q 035624 631 FSKVALLFLGGN-DDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 631 ~~~i~~~f~gg~-ddreAl~~a~rm---a~~~~~~l 662 (775)
+.+ +-|+|.. +..|.++..++. |...|+.+
T Consensus 101 ftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 101 FSS--VMIDGSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred CCE--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 334 5667743 567777776665 44456555
No 254
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=21.13 E-value=4.7e+02 Score=30.94 Aligned_cols=185 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhcc
Q 035624 227 SSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRMTPEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVP 306 (775)
Q Consensus 227 ~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~ 306 (775)
.+.+..+..+....+|.+....+..++..-+..|-. ++--++.++++... | .+++|+.++|++..
T Consensus 263 ~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rpg-------------lapg~i~g~~a~~~-~-~GFlG~Ilag~lag 327 (563)
T PRK10712 263 GTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPG-------------LTPGLIGGMLAVST-G-SGFIGGIIAGFLAG 327 (563)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCcc-------------chHHHHHHHHHhcC-C-chHHHHHHHHHHHH
Q ss_pred CCCCchhHH---HHhhhhhhHhhhHHHHHHHHhhcccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 035624 307 RGPPLGSAL---VNKFDCLVSGFFLPIFVTTSAMRIHDLRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYWKMHKNDA 383 (775)
Q Consensus 307 ~~~~~~~~l---~~~l~~~~~~~f~PifF~~~G~~id~l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~~~~~~~~ 383 (775)
....+-++. .+.++.+-..++.|++-..+ ...+.+.++.-.+-.+..++..++..+.-...
T Consensus 328 yv~~~l~K~~~lP~~l~~l~piliiPllt~li----------------~~~l~~~viGpp~~~l~~~l~~~l~~l~~~~~ 391 (563)
T PRK10712 328 YVAKLISTKLKLPQSMEALKPILIIPLISSLV----------------VGLAMIYLIGKPVAGILEGLTHWLQTMGTANA 391 (563)
T ss_pred HHHHHHHHhccCcHHHHhcCceeehhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHhhhhhHHHHH----HhhhccCCCCChhhHHHHHHHHHHH------HHhHHHHHHhhcCcccc
Q 035624 384 MALALIMNAKGIVEMAF----YTFASDGRYVPPNMFRFMLGIIIVM------GSIVPIFVRKLYDPSRK 442 (775)
Q Consensus 384 ~~lg~~l~~rG~v~l~~----~~~~~~~~ii~~~~~~~lv~~~il~------t~i~~~l~~~l~~~~~~ 442 (775)
+.+|.+++.--.+++-- +......+.+.+..|..+....... ..++..+.|..++++.|
T Consensus 392 ~l~G~ilGam~~fdmggpvnkaa~~~~~~~la~~g~~p~~a~~~a~~vpp~G~alA~~l~k~kf~k~er 460 (563)
T PRK10712 392 VLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLAMGLATMVARRKFDKAQQ 460 (563)
T ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhcCchHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHHH
No 255
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=20.99 E-value=5.8e+02 Score=27.19 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcCCCCcccccccCCCCCccc
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDHGNLKRSVTHMDSSADSFS 632 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr~~~~~~~~~~~~~~~~~~ 632 (775)
..+.+.+++.|++.+...|+.-+.++-...+. -..+......+.++++ .||.+=-|++..++..... -+.-.
T Consensus 26 ~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~a---i~~Gf 98 (282)
T TIGR01859 26 LEWTQAILEAAEEENSPVIIQVSEGAIKYMGG----YKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKA---IKAGF 98 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhccCc----HHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHH---HHcCC
Confidence 57899999999999999999987765433221 1346777888899999 8987766776433211000 00011
Q ss_pred eEEEEecC-CcChHHHHHHHHHHh---hCCCeE
Q 035624 633 KVALLFLG-GNDDREALTLAKRMG---RDNKVR 661 (775)
Q Consensus 633 ~i~~~f~g-g~ddreAl~~a~rma---~~~~~~ 661 (775)
+. +-+.+ ..+.+|-++.++++. ...|+.
T Consensus 99 ~s-Vmid~s~l~~~eni~~t~~v~~~a~~~gv~ 130 (282)
T TIGR01859 99 SS-VMIDGSHLPFEENLALTKKVVEIAHAKGVS 130 (282)
T ss_pred CE-EEECCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 22 34444 335666777766664 556654
No 256
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=20.94 E-value=1.2e+03 Score=28.13 Aligned_cols=30 Identities=10% Similarity=-0.050 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 035624 148 ISPLVALIPTFMVPTGTGPSGFFITPLYYV 177 (775)
Q Consensus 148 l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~ 177 (775)
.+|+++++-.+..|+.+...++.+|.++..
T Consensus 156 FLPi~ia~saAkkf~~np~lg~~ig~~L~~ 185 (627)
T PRK09824 156 FFPIILGYTAGKKFGGNPFTAMVIGGALVH 185 (627)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHC
Confidence 358888888888888776677777777654
No 257
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=20.78 E-value=1.1e+02 Score=28.41 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=24.4
Q ss_pred EEcCCCCcHHHHHHHHhhcCCcEEEEcccccc
Q 035624 549 AISPLDLMHDDICTLALDKLASLVILSFHRTW 580 (775)
Q Consensus 549 ~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~ 580 (775)
++-|...||..|.++|++-++|++|-|..+..
T Consensus 76 SiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 76 SIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred EeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 55678999999999999999999999987654
No 258
>PLN00200 argininosuccinate synthase; Provisional
Probab=20.78 E-value=2.7e+02 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=29.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
.++|++.|.||-|..-++..+++ ..+.+++-+++...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 46899999999999888877755 34667888888754
No 259
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.67 E-value=2.5e+02 Score=29.61 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCC
Q 035624 634 VALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDD 673 (775)
Q Consensus 634 i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~ 673 (775)
+++.|.||+|+--.|.++.+.... +.++++.|--++
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DTg~~f 77 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDTGYHF 77 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCC----CcEEEEeCCCcC
Confidence 566777777776666666665555 666666554443
No 260
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.62 E-value=85 Score=27.93 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccc
Q 035624 554 DLMHDDICTLALDKLASLVILSFH 577 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h 577 (775)
.+-++++++.|+++++|++|+|-.
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 456899999999999999999953
No 261
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.59 E-value=5.8e+02 Score=28.14 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred eEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCC-CceEEEEcCCCCccc
Q 035624 542 VSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAP-CSVGILIDHGNLKRS 620 (775)
Q Consensus 542 v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Ap-c~Vgilvdr~~~~~~ 620 (775)
.-|-.|... ...+.+.|++.|++.++.+||.-+.+.-...+ ...++...+...++++ .||.+=-|.+.++..
T Consensus 18 yAVgAfN~~--n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~ 90 (347)
T PRK09196 18 YGVPAFNVN--NLEQVQAIMEAADETDSPVILQASAGARKYAG-----EPFLRHLILAAVEEYPHIPVVMHQDHGNSPAT 90 (347)
T ss_pred ceEEEeeeC--CHHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 344444443 35789999999999999999999876533222 2347778888888997 999999999854432
Q ss_pred ccccCCCCCccceEEEEecCCc--------ChHHHHHHHHHH---hhCCCeEE
Q 035624 621 VTHMDSSADSFSKVALLFLGGN--------DDREALTLAKRM---GRDNKVRL 662 (775)
Q Consensus 621 ~~~~~~~~~~~~~i~~~f~gg~--------ddreAl~~a~rm---a~~~~~~l 662 (775)
..... ..-+.+ +-|+|.. +-.|.++..++. |...|+.+
T Consensus 91 i~~ai--~~GftS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 91 CQRAI--QLGFTS--VMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred HHHHH--HcCCCE--EEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 21000 001234 5667753 356666665554 55566555
No 262
>COG4827 Predicted transporter [General function prediction only]
Probab=20.53 E-value=9e+02 Score=24.53 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcccChHHHH--hhhhhHHHHHHH-HHHHHHHHHHHHHHhhc----CChhHHHHHHHHHhhccHHHHHH
Q 035624 113 NIGIALFIFQSGVKMDLSMVS--KVGRKALYIGIL-SVISPLVALIPTFMVPT----GTGPSGFFITPLYYVTSFPVIFC 185 (775)
Q Consensus 113 ~igl~~llF~~Gle~d~~~lk--~~~~~~~~i~~~-~~l~p~~~~~~~~~~l~----~~~~~~l~ig~~ls~Ts~~vv~~ 185 (775)
.+|+.+.+|..|+++-+..=. -..|++..|+.. +++++++.+ +.-++.. .....++.+-..++.-=...-..
T Consensus 12 ~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~g-la~~vs~~~~~~ls~y~llihvllslfLIgaGI~ 90 (239)
T COG4827 12 VIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGG-LADHVSFDAFERLSAYGLLIHVLLSLFLIGAGIY 90 (239)
T ss_pred HHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567788888888887665311 122335555544 444444433 3322211 11124444444444422222234
Q ss_pred HHhhccccCChhHH
Q 035624 186 LLTHLKILNSELGR 199 (775)
Q Consensus 186 iL~el~~~~s~~g~ 199 (775)
+.++.+--+++..+
T Consensus 91 t~rkW~~~~~D~sK 104 (239)
T COG4827 91 TQRKWNSGKSDVSK 104 (239)
T ss_pred HHHHhhccCcchhh
Confidence 45666555545444
No 263
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.52 E-value=2.5e+02 Score=28.81 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=34.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhc
Q 035624 130 SMVSKVGRKALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVT 178 (775)
Q Consensus 130 ~~lk~~~~~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~T 178 (775)
++-|+..++...+-+..++.|.+++.+++++++ .|.+.+.+|+.+...
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~-~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG-SWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence 445677777777777888889988888888887 444555666655543
Done!