Query 035624
Match_columns 775
No_of_seqs 243 out of 1944
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.1E-23 3.8E-28 228.1 14.1 300 108-438 60-385 (388)
2 3mt0_A Uncharacterized protein 99.8 9.5E-20 3.3E-24 193.6 19.2 251 460-772 8-277 (290)
3 3olq_A Universal stress protei 99.8 1.8E-19 6E-24 194.0 15.6 272 460-772 8-306 (319)
4 3loq_A Universal stress protei 99.8 2.3E-19 8E-24 191.0 12.1 268 460-773 23-292 (294)
5 3cis_A Uncharacterized protein 99.8 7.7E-19 2.6E-23 188.4 14.8 274 459-772 19-307 (309)
6 3ab8_A Putative uncharacterize 99.8 4.3E-18 1.5E-22 178.5 14.3 257 461-770 2-268 (268)
7 3fdx_A Putative filament prote 99.3 5.5E-12 1.9E-16 118.4 9.1 137 461-611 3-142 (143)
8 3s3t_A Nucleotide-binding prot 99.2 6.4E-12 2.2E-16 118.4 6.8 138 460-611 6-145 (146)
9 1mjh_A Protein (ATP-binding do 99.2 2.3E-11 7.8E-16 116.9 9.7 141 460-613 6-159 (162)
10 3dlo_A Universal stress protei 99.2 2.1E-11 7.1E-16 116.8 8.8 130 460-612 25-155 (155)
11 3hgm_A Universal stress protei 99.2 7E-12 2.4E-16 118.2 4.9 138 461-611 4-147 (147)
12 3tnj_A Universal stress protei 99.2 1.6E-11 5.4E-16 116.4 5.7 141 460-614 7-148 (150)
13 2dum_A Hypothetical protein PH 99.2 3.5E-11 1.2E-15 116.6 8.1 142 461-615 7-158 (170)
14 1tq8_A Hypothetical protein RV 99.2 4.3E-11 1.5E-15 115.6 7.9 140 459-614 17-159 (163)
15 2gm3_A Unknown protein; AT3G01 99.1 1.2E-10 4E-15 113.5 10.9 145 460-615 6-165 (175)
16 2z08_A Universal stress protei 99.1 2.9E-11 9.8E-16 112.8 6.0 132 461-611 4-136 (137)
17 3fg9_A Protein of universal st 99.1 3.1E-11 1.1E-15 115.3 4.4 136 460-611 16-155 (156)
18 3idf_A USP-like protein; unive 99.1 2.5E-10 8.5E-15 106.4 7.9 134 461-611 3-137 (138)
19 1jmv_A USPA, universal stress 99.0 1.3E-09 4.6E-14 101.7 10.8 134 461-614 4-139 (141)
20 1q77_A Hypothetical protein AQ 98.9 4.3E-09 1.5E-13 97.9 9.6 128 460-611 5-137 (138)
21 3mt0_A Uncharacterized protein 98.8 6E-09 2E-13 110.1 7.1 137 459-615 134-278 (290)
22 3olq_A Universal stress protei 98.7 6.9E-09 2.4E-13 110.9 4.9 142 459-615 156-307 (319)
23 3loq_A Universal stress protei 98.7 2E-08 6.7E-13 106.2 7.8 123 458-614 169-291 (294)
24 3s3t_A Nucleotide-binding prot 98.7 1.1E-07 3.7E-12 89.1 11.9 127 629-770 3-146 (146)
25 3hgm_A Universal stress protei 98.6 1.2E-07 4E-12 88.9 8.0 124 631-769 2-147 (147)
26 3fdx_A Putative filament prote 98.5 2.1E-07 7.1E-12 86.8 9.6 123 632-770 2-143 (143)
27 1mjh_A Protein (ATP-binding do 98.5 4.9E-07 1.7E-11 86.3 11.9 127 631-772 5-160 (162)
28 2z08_A Universal stress protei 98.5 2.6E-07 8.7E-12 85.7 9.2 125 631-770 2-137 (137)
29 3cis_A Uncharacterized protein 98.5 1.1E-07 3.7E-12 101.3 7.5 134 460-613 172-306 (309)
30 3idf_A USP-like protein; unive 98.5 6.3E-07 2.2E-11 83.0 11.6 122 632-769 2-137 (138)
31 1tq8_A Hypothetical protein RV 98.5 3.4E-07 1.2E-11 88.0 10.0 126 631-772 17-159 (163)
32 3dlo_A Universal stress protei 98.5 3.8E-07 1.3E-11 86.9 10.1 123 631-770 24-155 (155)
33 3tnj_A Universal stress protei 98.5 2.6E-07 8.8E-12 87.0 8.9 124 631-772 6-148 (150)
34 2dum_A Hypothetical protein PH 98.5 4.4E-07 1.5E-11 87.5 10.6 127 631-772 5-157 (170)
35 1jmv_A USPA, universal stress 98.5 7.4E-07 2.5E-11 82.8 10.7 123 631-773 2-140 (141)
36 3fg9_A Protein of universal st 98.4 7.7E-07 2.6E-11 84.4 10.1 125 630-770 14-156 (156)
37 2gm3_A Unknown protein; AT3G01 98.2 4.5E-06 1.5E-10 80.8 11.0 127 631-772 5-164 (175)
38 3ab8_A Putative uncharacterize 98.1 1.6E-06 5.3E-11 90.1 5.7 113 460-611 155-267 (268)
39 1q77_A Hypothetical protein AQ 98.1 1.1E-05 3.7E-10 74.6 9.0 39 631-669 4-43 (138)
40 3zux_A Transporter, ASBTNM; tr 97.7 0.022 7.5E-07 60.8 29.1 102 111-221 44-153 (332)
41 3g40_A Na-K-CL cotransporter; 95.0 0.64 2.2E-05 47.8 16.2 216 459-730 20-255 (294)
42 1zun_A Sulfate adenylyltransfe 71.1 4.9 0.00017 42.4 5.9 55 632-693 47-101 (325)
43 1sur_A PAPS reductase; assimil 62.2 24 0.00082 34.3 8.7 35 632-670 45-79 (215)
44 1ni5_A Putative cell cycle pro 57.0 12 0.00042 40.9 6.0 95 631-730 13-119 (433)
45 2l0e_A Sodium/hydrogen exchang 54.8 2.6 8.9E-05 28.4 0.0 28 165-192 3-30 (33)
46 2wsi_A FAD synthetase; transfe 52.2 23 0.00079 36.7 6.9 90 632-731 54-169 (306)
47 3a2k_A TRNA(Ile)-lysidine synt 50.4 44 0.0015 36.7 9.2 59 631-693 18-76 (464)
48 3zux_A Transporter, ASBTNM; tr 48.9 1.6E+02 0.0056 30.5 12.9 123 298-436 27-155 (332)
49 1wy5_A TILS, hypothetical UPF0 41.2 27 0.00092 36.3 5.3 40 631-670 24-64 (317)
50 1z41_A YQJM, probable NADH-dep 40.4 3E+02 0.01 28.5 13.4 119 586-729 190-310 (338)
51 3fwk_A FMN adenylyltransferase 37.7 28 0.00095 36.1 4.6 92 632-730 59-171 (308)
52 1o97_C Electron transferring f 36.3 31 0.001 35.0 4.6 97 636-742 31-140 (264)
53 3gbv_A Putative LACI-family tr 35.1 1.6E+02 0.0055 29.1 10.1 76 525-615 25-103 (304)
54 3kke_A LACI family transcripti 35.0 71 0.0024 32.1 7.4 50 523-575 29-78 (303)
55 3k32_A Uncharacterized protein 35.0 50 0.0017 31.8 5.8 35 632-670 7-41 (203)
56 1efp_B ETF, protein (electron 35.0 50 0.0017 33.1 5.9 93 640-742 35-141 (252)
57 3gr7_A NADPH dehydrogenase; fl 33.2 1.7E+02 0.0058 30.6 10.0 121 584-729 188-310 (340)
58 3dbi_A Sugar-binding transcrip 32.6 60 0.0021 33.3 6.4 74 523-615 77-152 (338)
59 1efv_B Electron transfer flavo 32.3 51 0.0018 33.1 5.5 95 638-742 36-144 (255)
60 2o8v_A Phosphoadenosine phosph 32.0 1.2E+02 0.0041 30.1 8.3 35 632-670 46-80 (252)
61 3kru_A NADH:flavin oxidoreduct 30.4 4.8E+02 0.016 27.1 13.5 120 584-729 187-310 (343)
62 3egc_A Putative ribose operon 29.0 1.6E+02 0.0054 29.1 8.8 161 524-725 23-192 (291)
63 3gxq_A Putative regulator of t 28.7 42 0.0014 23.6 2.7 27 540-570 10-36 (54)
64 2oq2_A Phosphoadenosine phosph 27.2 58 0.002 32.7 4.9 41 632-673 42-82 (261)
65 1iv0_A Hypothetical protein; r 27.0 1.2E+02 0.0042 25.5 6.1 59 554-615 37-95 (98)
66 3hgj_A Chromate reductase; TIM 25.8 3.2E+02 0.011 28.4 10.6 121 584-729 196-321 (349)
67 3k4h_A Putative transcriptiona 25.3 2.4E+02 0.0082 27.6 9.3 72 523-615 27-101 (292)
68 3k9c_A Transcriptional regulat 22.4 1.6E+02 0.0055 29.2 7.3 49 523-575 25-73 (289)
69 1vhx_A Putative holliday junct 20.8 1.7E+02 0.0057 26.7 6.2 61 553-615 40-100 (150)
70 3o74_A Fructose transport syst 20.7 1.2E+02 0.0039 29.7 5.7 74 523-615 16-91 (272)
71 3g1w_A Sugar ABC transporter; 20.7 1.8E+02 0.006 28.9 7.2 75 524-615 19-95 (305)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=1.1e-23 Score=228.11 Aligned_cols=300 Identities=15% Similarity=0.134 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHHhcccChHHH----Hhhhh--hHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhccHH
Q 035624 108 IGSMGNIGIALFIFQSGVKMDLSMV----SKVGR--KALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLYYVTSFP 181 (775)
Q Consensus 108 l~~l~~igl~~llF~~Gle~d~~~l----k~~~~--~~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~ls~Ts~~ 181 (775)
...+.+-.+.+++|.+|+|+|.+.+ ++..| .....++.|+++|++++ ..++...+.+.....+...|+.+
T Consensus 60 ~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~~~~~~gw~ip~ATdIA 135 (388)
T 1zcd_A 60 LLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYADPITREGWAIPAATDIA 135 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSSTTHHHHTSSSSCCCHH
T ss_pred HHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCChhhhhhhHHHHHHHHH
Confidence 4456667788999999999999977 55554 37888999999999873 34555555566777777889999
Q ss_pred HHHHHHhhccc-cCChhHHHHHHHHHHHhHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 182 VIFCLLTHLKI-LNSELGRLAQSSAIVADFLSYATVLLLTVSQVASSSPAQALRTLGYVVFFIFIVMVVVRPAMLLIVRM 260 (775)
Q Consensus 182 vv~~iL~el~~-~~s~~g~l~ls~a~i~D~~~~i~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~v~r~~~~~l~~~ 260 (775)
....++..++. .++..++.+++.|++||+.+|++++++.. ++.+.. .+...+++++.. +..+|
T Consensus 136 fal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~~----~l~~~~~~~~~~---------~~l~r 199 (388)
T 1zcd_A 136 FALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSMA----SLGVAAVAIAVL---------AVLNL 199 (388)
T ss_dssp HHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHH----HHHHHHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHH----HHHHHHHHHHHH---------HHHHH
Confidence 99999999865 45567799999999999999999988863 222211 111122121111 11222
Q ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCC----CchhHHHHhhhhhhHhhhHHHH-HHHH
Q 035624 261 TPEGKEVSQTGLYVVILILLLFLSFARKFYSELTVAGLYIVGLAVPRGP----PLGSALVNKFDCLVSGFFLPIF-VTTS 335 (775)
Q Consensus 261 ~~~~~~~~e~~~~~~l~~~l~~~~~a~~~~g~~~~lgaf~aGl~~~~~~----~~~~~l~~~l~~~~~~~f~Pif-F~~~ 335 (775)
.. +++...++.+ .+ .+.+.++.. |+|+.+|+|++|+++|..+ +..+++++++++++..+++|+| |+..
T Consensus 200 ~~----v~~~~~y~~l-gl-~~w~~~~~s-GvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFana 272 (388)
T 1zcd_A 200 CG----ARRTGVYILV-GV-VLWTAVLKS-GVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANA 272 (388)
T ss_dssp TT----CCCTHHHHHH-HH-HHHHHTTTS-HHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred hc----chhHHHHHHH-HH-HHHHHHHHh-CccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 1223333333 22 445666889 9999999999999999863 3468899999999989999999 9999
Q ss_pred hhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHhhhhhHHHHHHhh
Q 035624 336 AMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLYW----------KMHKNDAMALALIMNAKGIVEMAFYTF 403 (775)
Q Consensus 336 G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~~----------~~~~~~~~~lg~~l~~rG~v~l~~~~~ 403 (775)
|+++|. ... ... .....+++..+++|++|++..++.. |++|+|...+|++++.+++++++++++
T Consensus 273 Gv~l~~~~~~~--l~~--~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~l 348 (388)
T 1zcd_A 273 GVSLQGVTLDG--LTS--ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASL 348 (388)
T ss_dssp CCCCSSSCCCT--HHH--HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHH
T ss_pred Ceeecccchhh--ccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHH
Confidence 999997 232 111 1123444555889999966666665 999999999999999999999999999
Q ss_pred hccCCC--CChhhHHHHHHHHHHHHHhHHHHHHhhcC
Q 035624 404 ASDGRY--VPPNMFRFMLGIIIVMGSIVPIFVRKLYD 438 (775)
Q Consensus 404 ~~~~~i--i~~~~~~~lv~~~il~t~i~~~l~~~l~~ 438 (775)
+++.+. +.++.+..+++++++++++++.+.|+.++
T Consensus 349 af~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 349 AFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp HSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred hccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998876 35677999999999999999988876654
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.83 E-value=9.5e-20 Score=193.64 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=177.7
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||+|++++++...+++.|..++ ++.+..++++|+++ + .+ .....++..+.++ .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~-~---------~~-------~~~~l~~~~~~~~---~--- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIA--GVTQSHLHLLVCEK-R---------RD-------HSAALNDLAQELR---E--- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHH--HHHCCEEEEEEECS-S---------SC-------CHHHHHHHHHHHH---H---
T ss_pred ceEEEEeCCCccchHHHHHHHHHH--HhcCCeEEEEEeeC-c---------HH-------HHHHHHHHHHHHh---h---
Confidence 379999999999999999999998 45567999999987 2 00 0011222333332 1
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCcc
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKR 619 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~ 619 (775)
.+++++..+.. .++..+.|++.|+++++|+||||+|++.+.++.+ +|++.+++++++||||.++.....
T Consensus 63 ~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~~--- 131 (290)
T 3mt0_A 63 EGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTARP--- 131 (290)
T ss_dssp TTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCSC---
T ss_pred CCCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCCC---
Confidence 34666665442 3679999999999999999999999987666544 788899999999999988863331
Q ss_pred cccccCCCCCccceEEEEecCCcC-------hHHHHHHHHHHhhCCCeEEEEEEeeecCCCCC--C-----chhh----h
Q 035624 620 SVTHMDSSADSFSKVALLFLGGND-------DREALTLAKRMGRDNKVRLTVVHFIAASDDGD--V-----DWET----I 681 (775)
Q Consensus 620 ~~~~~~~~~~~~~~i~~~f~gg~d-------dreAl~~a~rma~~~~~~ltvl~~~~~~~~~~--~-----~~~~----~ 681 (775)
. ..++|+++++|+++ .+.|+++|.++|+..+++++++|+.++..... . +..+ +
T Consensus 132 --------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 132 --------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYRE 202 (290)
T ss_dssp --------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHH
T ss_pred --------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHH
Confidence 1 26799999999998 79999999999999999999999987532110 0 1111 1
Q ss_pred hHHHHHHHhhcC-CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCC
Q 035624 682 LDSEVLRDIKKT-ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDF 760 (775)
Q Consensus 682 ~d~~~~~~~~~~-~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 760 (775)
..+++.+++..+ ......+-.+ +.++.+++++ .++||++||+|+. +|+.+| -+|-+.+-+...
T Consensus 203 ~l~~~~~~~g~~~~~~~v~~g~~--~~~I~~~a~~--~~~dLiVmG~~g~------~~~~~~----~~Gsv~~~vl~~-- 266 (290)
T 3mt0_A 203 ACRTFQAEYGFSDEQLHIEEGPA--DVLIPRTAQK--LDAVVTVIGTVAR------TGLSGA----LIGNTAEVVLDT-- 266 (290)
T ss_dssp HHHHHHHHHTCCTTTEEEEESCH--HHHHHHHHHH--HTCSEEEEECCSS------CCGGGC----CSCHHHHHHHTT--
T ss_pred HHHHHHHHcCCCcceEEEeccCH--HHHHHHHHHh--cCCCEEEECCCCC------cCCcce----ecchHHHHHHhc--
Confidence 222233333221 1222222222 4558888887 7899999999973 345444 589999999888
Q ss_pred CCcccEEEEEee
Q 035624 761 GNKCSVLVVQQQ 772 (775)
Q Consensus 761 ~~~~svlvvqq~ 772 (775)
++|+||||..+
T Consensus 267 -~~~pVLvv~~~ 277 (290)
T 3mt0_A 267 -LESDVLVLKPD 277 (290)
T ss_dssp -CSSEEEEECCH
T ss_pred -CCCCEEEECCC
Confidence 88999999754
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.81 E-value=1.8e-19 Score=193.98 Aligned_cols=272 Identities=10% Similarity=0.099 Sum_probs=178.3
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC-
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR- 538 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~- 538 (775)
-|||+|++++++...+++.|..++ ++.+..++++|+++-.....+........... .....++..+.++++.+..
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 83 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIV--QRNGGRIKAFLPVYDLSYDMTTLLSPDERNAM--RKGVINQKTAWIKQQARYYL 83 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHH--HHHCCEEEEEEEECCGGGGCTTTSCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHH--HHcCCeEEEEEEecccchhhccccChhhHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999988 55568999999986322111100000000000 0001111122222222111
Q ss_pred CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCc
Q 035624 539 WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLK 618 (775)
Q Consensus 539 ~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~ 618 (775)
..+++++..+.. .++..+.|++.|+++++||||||+|++.+.++.+ +|++.++|++++||||.++.++..
T Consensus 84 ~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~-- 153 (319)
T 3olq_A 84 EAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDKEW-- 153 (319)
T ss_dssp HTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESSCC--
T ss_pred hcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCccc--
Confidence 145777765442 4789999999999999999999999987766554 788899999999999998875541
Q ss_pred ccccccCCCCCccceEEEEecCCcC-------hHHHHHHHHHHhhCC--CeEEEEEEeeecCCCCC------Cc---h--
Q 035624 619 RSVTHMDSSADSFSKVALLFLGGND-------DREALTLAKRMGRDN--KVRLTVVHFIAASDDGD------VD---W-- 678 (775)
Q Consensus 619 ~~~~~~~~~~~~~~~i~~~f~gg~d-------dreAl~~a~rma~~~--~~~ltvl~~~~~~~~~~------~~---~-- 678 (775)
...++|++++.|+++ .+.|+++|.++++.. ++++|++|+..+..... .+ .
T Consensus 154 ----------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
T 3olq_A 154 ----------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNN 223 (319)
T ss_dssp ----------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHH
T ss_pred ----------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHH
Confidence 126799999999985 499999999999988 99999999986532210 00 0
Q ss_pred -hhhhHHHHHHHhhcC---CC--eEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccch
Q 035624 679 -ETILDSEVLRDIKKT---EC--MRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLG 752 (775)
Q Consensus 679 -~~~~d~~~~~~~~~~---~~--v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~ig 752 (775)
.++..++.++++..+ .. ....+-.. ..++.+++++ .++||++||+|+. +|+.+| -+|-+.
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~--~~~dLiV~G~~g~------~~~~~~----~~Gsv~ 289 (319)
T 3olq_A 224 ALRGQHLIAMKELRQKFSIPEEKTHVKEGLP--EQVIPQVCEE--LNAGIVVLGILGR------TGLSAA----FLGNTA 289 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEESCH--HHHHHHHHHH--TTEEEEEEECCSC------CSTHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEecCCc--HHHHHHHHHH--hCCCEEEEeccCc------cCCccc----cccHHH
Confidence 011112233333221 11 22222222 4557888887 7899999999863 234333 578888
Q ss_pred hhhhcCCCCCcccEEEEEee
Q 035624 753 DLLASKDFGNKCSVLVVQQQ 772 (775)
Q Consensus 753 d~las~d~~~~~svlvvqq~ 772 (775)
+-+... ++|+||||..+
T Consensus 290 ~~vl~~---~~~pVLvv~~~ 306 (319)
T 3olq_A 290 EQLIDH---IKCDLLAIKPD 306 (319)
T ss_dssp HHHHTT---CCSEEEEECCT
T ss_pred HHHHhh---CCCCEEEECCC
Confidence 888887 88999999765
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.79 E-value=2.3e-19 Score=190.96 Aligned_cols=268 Identities=12% Similarity=0.034 Sum_probs=180.4
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||+|++.+++...+++.|..++ ++.+.+++++|+++.+....... .....+.........++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFK--KVGVEEIGVLFVINLTKLSTVSG-GIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHH--HTTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCcccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 389999999999999999999998 55678999999998654221100 0000000000011223334433333322
Q ss_pred cceEEEE-EEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCCCCc
Q 035624 540 GAVSINT-FTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLK 618 (775)
Q Consensus 540 ~~v~v~~-~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~ 618 (775)
.+++++. .+. ..++..+.| .++++++|+||||.|++.+..+. .+|++.++|++++||||.++.+... +
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~~~-~ 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKI------LLGSVSEGVLHDSKVPVYIFKHDMV-V 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHH------HHCCHHHHHHHHCSSCEEEECCCTT-T
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccce------eeccHHHHHHhcCCCCEEEecCccc-c
Confidence 3566665 222 136889999 99999999999999987654432 3788899999999999988865442 1
Q ss_pred ccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC-CCeE
Q 035624 619 RSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT-ECMR 697 (775)
Q Consensus 619 ~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~v~ 697 (775)
....++|++++.|+++++.|+++|.++++..+++++++++.++.. .++..+++.+.++.. -.+.
T Consensus 167 ---------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~~~~~ 231 (294)
T 3loq_A 167 ---------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEGIEVH 231 (294)
T ss_dssp ---------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTTCCEE
T ss_pred ---------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcCCcEE
Confidence 122679999999999999999999999999999999999986543 223334444444433 1222
Q ss_pred EEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEeee
Q 035624 698 YEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQQR 773 (775)
Q Consensus 698 y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq~~ 773 (775)
+.-..-+-.+++.+++++ .++||+++|+++. +++.+| -+|.+.+-+... ++++||||.+..
T Consensus 232 ~~~~~g~~~~~I~~~a~~--~~~dLlV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 232 VHIESGTPHKAILAKREE--INATTIFMGSRGA------GSVMTM----ILGSTSESVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp EEEECSCHHHHHHHHHHH--TTCSEEEEECCCC------SCHHHH----HHHCHHHHHHHH---CSSCEEEECSCT
T ss_pred EEEecCCHHHHHHHHHHh--cCcCEEEEeCCCC------CCccce----eeCcHHHHHHhc---CCCCEEEECCCC
Confidence 211111123456666666 6899999999973 234333 478888888887 889999998764
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.78 E-value=7.7e-19 Score=188.36 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=177.7
Q ss_pred ceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCcc-ch-hhhhhhhcccccccccchHHHHHHHHccc
Q 035624 459 ELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQAT-SI-FVSHQKKKKNFSAYSYSENVIVSFKKFGG 536 (775)
Q Consensus 459 e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 536 (775)
.-|||+|++++++...+++.+..++ ++.+.+++++|+++ +.... +. ....+..+ ......++.++.+.+..+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDA--ELRKIPLTLVHAVS-PEVATWLEVPLPPGVLR---WQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHH--HHHTCCEEEEEECC-CCCCCTTCCCCCHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHH--HhcCCcEEEEEEec-CcccccccCCCCchhhH---HHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999988887 44567899999987 32110 00 00000000 000111222222222211
Q ss_pred cC---CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 537 LR---WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 537 ~~---~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
.. ..+++++..+. .++..+.|++.|+ ++|+||||.|++.+..+.+ +|++.++|++++||||.++..
T Consensus 93 ~~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~ 161 (309)
T 3cis_A 93 QASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIHD 161 (309)
T ss_dssp HHCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEECT
T ss_pred HhcccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEcC
Confidence 10 12466666444 4789999999996 8999999999987766544 788899999999999998865
Q ss_pred CCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC---CC--chhhhhHHHHHH
Q 035624 614 HGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDG---DV--DWETILDSEVLR 688 (775)
Q Consensus 614 r~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~---~~--~~~~~~d~~~~~ 688 (775)
+..... ....++|++++.|+++++.|+++|.++++..+++++++|+.++.... .. +..++..++.++
T Consensus 162 ~~~~~~--------~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (309)
T 3cis_A 162 EDSVMP--------HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA 233 (309)
T ss_dssp TCCCSC--------SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHH
T ss_pred CcccCC--------CCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHH
Confidence 542110 11257999999999999999999999999999999999998653321 00 111122222333
Q ss_pred HhhcC-----CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCc
Q 035624 689 DIKKT-----ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNK 763 (775)
Q Consensus 689 ~~~~~-----~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~ 763 (775)
+.... ..+.+... +..| +..+.|.+.++++||++||+++. +++.+| -+|-+.+-+... ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~g-~~~~~I~~~a~~adliV~G~~~~------~~~~~~----l~Gsv~~~vl~~---~~ 298 (309)
T 3cis_A 234 ERLAGWQERYPNVAITRV-VVRD-QPARQLVQRSEEAQLVVVGSRGR------GGYAGM----LVGSVGETVAQL---AR 298 (309)
T ss_dssp HHHTTHHHHCTTSCEEEE-EESS-CHHHHHHHHHTTCSEEEEESSCS------SCCTTC----SSCHHHHHHHHH---CS
T ss_pred HHHHHHHhhCCCCcEEEE-EEcC-CHHHHHHHhhCCCCEEEECCCCC------CCcccc----ccCcHHHHHHhc---CC
Confidence 33221 12223222 3344 34555555555899999999963 233333 578888888877 78
Q ss_pred ccEEEEEee
Q 035624 764 CSVLVVQQQ 772 (775)
Q Consensus 764 ~svlvvqq~ 772 (775)
++||||..+
T Consensus 299 ~pVlvv~~~ 307 (309)
T 3cis_A 299 TPVIVARES 307 (309)
T ss_dssp SCEEEECC-
T ss_pred CCEEEeCCC
Confidence 999999754
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.75 E-value=4.3e-18 Score=178.48 Aligned_cols=257 Identities=12% Similarity=0.087 Sum_probs=171.6
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhh-hhcc--------cccccccchHHHHHH
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQ-KKKK--------NFSAYSYSENVIVSF 531 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~-~~~~--------~~~~~~~~~~i~~~f 531 (775)
|||+|++++++...+++.+..++ ++.+.+++++|+++.+....+...... ..++ ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLA--YKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHH--HHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHH--HHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888 445678999999875421100000000 0000 000011223333333
Q ss_pred HHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEcccccc-ccCCCccccchhhHHHHHHHhccCCCceEE
Q 035624 532 KKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTW-YIDGSLESDDQSVRNLNLRILEKAPCSVGI 610 (775)
Q Consensus 532 ~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~-~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgi 610 (775)
.+..+. .+++++..+. .++..+.|++. ++++|+||||.||+. +.++.+ +|++.++|++++||||.+
T Consensus 80 ~~~~~~--~g~~~~~~~~---~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLE---EGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHH--TTCCEEEEEE---EECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHh--CCCCeEEEEe---cCCHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEEE
Confidence 333222 3466666444 36899999998 899999999999987 665544 788899999999999988
Q ss_pred EEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHh
Q 035624 611 LIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDI 690 (775)
Q Consensus 611 lvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~ 690 (775)
+..+.. ..++|++++.|+++.+.|+++|.++++..+++++++|+.++. +..++..++..+.+
T Consensus 147 v~~~~~-------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----~~~~~~l~~~~~~l 208 (268)
T 3ab8_A 147 APGEPV-------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----ARAEAWALEAEAYL 208 (268)
T ss_dssp ECSSCC-------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----HHHHHHHHHHHHHH
T ss_pred ECCCCC-------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----HHHHHHHHHHHHHH
Confidence 754331 157999999999999999999999999999999999997542 12223334444444
Q ss_pred hcCCCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 691 KKTECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 691 ~~~~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
+.. .+.+. ..+.+| +..+.|.+.+.++||++||+ |+.+| -+|-+.+-+... ++++||||.
T Consensus 209 ~~~-~~~~~-~~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 209 RDH-GVEAS-ALVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLTAR 268 (268)
T ss_dssp HHT-TCCEE-EEEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEEEC
T ss_pred HHc-CCceE-EEEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEEeC
Confidence 432 12222 222334 34455555555559999999 33333 578888888887 889999983
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.29 E-value=5.5e-12 Score=118.43 Aligned_cols=137 Identities=20% Similarity=0.108 Sum_probs=94.4
Q ss_pred eEEEEeecCCC--hhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC
Q 035624 461 QIVCCIYIPSN--ISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR 538 (775)
Q Consensus 461 rILvcv~~~~~--~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 538 (775)
|||+|++.+++ ...+++.+..++ ++.+.+++++|+++.+........... ..........++..+.++++.++.
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEA--RIDDAEVHFLTVIPSLPYYASLGMAYT--AELPGMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHH--HHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEecCChHhhHHHHHHHHHHHH--HhcCCeEEEEEEecCCccccccccccc--chhhhHHHHHHHHHHHHHHHHHHc
Confidence 79999999999 999999998887 445689999999986542211100000 000011123345566666666543
Q ss_pred C-cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 539 W-GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 539 ~-~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
. ..+.++..+. .++..+.|++.|+++++|+||||.|+ .+..+.+ +|++.++|++++||||.++
T Consensus 79 ~~~~~~v~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 79 SIPEDRMHFHVA---EGSPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEEE
T ss_pred CCCCCceEEEEE---ecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEEe
Confidence 3 3455665444 36899999999999999999999996 5555444 7899999999999999886
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.24 E-value=6.4e-12 Score=118.41 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=95.9
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||+|++.+++...+++.+..++ ++.+.+++++|+++.+........... .+...+.....++.++.+.+..++
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-- 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIA--QRHQANLTALYVVDDSAYHTPALDPVL-SELLDAEAAHAKDAMRQRQQFVAT-- 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEECCCCCCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 379999999999999999999888 445689999999997653321110000 000001111233344444433322
Q ss_pred cce-EEEEEEEEcCCCCcHHHHHH-HHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 540 GAV-SINTFTAISPLDLMHDDICT-LALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 540 ~~v-~v~~~~~vs~~~~m~~~I~~-~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.++ .++..+. .++..+.|++ .|+++++|+||||.|++.+..+.+ +|++.++|++++||||.++
T Consensus 81 ~g~~~~~~~~~---~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEIS---YGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEE---EECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEe---cCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 345 5555444 3689999999 999999999999999987766554 7889999999999999886
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.22 E-value=2.3e-11 Score=116.91 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=94.3
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccC----Cccchh-----h-hhh---hhcccccccccchH
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSD----QATSIF-----V-SHQ---KKKKNFSAYSYSEN 526 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~----~~~~~~-----~-~~~---~~~~~~~~~~~~~~ 526 (775)
-|||+|++.+++...+++.+..++ ++.+.+++++|+++... ...+.. . +.. ..+...+.....++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 379999999999999999999998 55678999999998530 100000 0 000 00000000111222
Q ss_pred HHHHHHHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCC
Q 035624 527 VIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPC 606 (775)
Q Consensus 527 i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc 606 (775)
.++.+.+..+. .+++++..+. .++..+.|++.|+++++|+||||.||+.+..+.+ +|++.++|++++||
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~---~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIV---VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--cCCceEEEEc---CCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCC
Confidence 33333222221 3466666444 3689999999999999999999999987766554 78899999999999
Q ss_pred ceEEEEc
Q 035624 607 SVGILID 613 (775)
Q Consensus 607 ~Vgilvd 613 (775)
||.|+..
T Consensus 153 pVlvv~~ 159 (162)
T 1mjh_A 153 PVLVVKR 159 (162)
T ss_dssp CEEEECC
T ss_pred CEEEEeC
Confidence 9998853
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.21 E-value=2.1e-11 Score=116.79 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=93.5
Q ss_pred eeEEEEeec-CCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC
Q 035624 460 LQIVCCIYI-PSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR 538 (775)
Q Consensus 460 ~rILvcv~~-~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 538 (775)
-|||+|++. ++....+++.|..++ ++.+.+++++|+++.+..... +. ....++.++.+.+..++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la--~~~~a~l~llhV~~~~~~~~~-----~~-------~~~~~~~l~~~~~~~~~- 89 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEA--RLRGVPVYVVHSLPGGGRTKD-----ED-------IIEAKETLSWAVSIIRK- 89 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHH--HHHTCCEEEEEEECCSTTSCH-----HH-------HHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEcCCCcccH-----HH-------HHHHHHHHHHHHHHHHh-
Confidence 479999999 999999999999988 445578999999985432111 00 01123333333333222
Q ss_pred CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEE
Q 035624 539 WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILI 612 (775)
Q Consensus 539 ~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilv 612 (775)
.++.++..+.+. .++..+.|++.|++.++|+||||.|++.+..+.+ +|++.++|++++||||.+++
T Consensus 90 -~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 90 -EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICIK 155 (155)
T ss_dssp -TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEEC
T ss_pred -cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEeC
Confidence 234444433442 5799999999999999999999999987766544 78899999999999998873
No 11
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.20 E-value=7e-12 Score=118.17 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=93.0
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchh--hhhhhhcc-cccccccchHHHHHHHHcccc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIF--VSHQKKKK-NFSAYSYSENVIVSFKKFGGL 537 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~--~~~~~~~~-~~~~~~~~~~i~~~f~~~~~~ 537 (775)
|||+|++.+++...+++.+..++ ++.+.+++++|+++.+....... ......+. ........++.++.+.+..++
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQ--QLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHH--HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999888 44568999999998543110000 00000000 000112233444444443332
Q ss_pred CCcceEE---EEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 538 RWGAVSI---NTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 538 ~~~~v~v---~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.++++ +..+. .++..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.++
T Consensus 82 --~g~~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 82 --LGVPADKVRAFVK---GGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp --TTCCGGGEEEEEE---ESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred --cCCCccceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEEC
Confidence 23444 44333 4689999999999999999999999987766554 7889999999999999764
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.17 E-value=1.6e-11 Score=116.36 Aligned_cols=141 Identities=10% Similarity=0.097 Sum_probs=86.1
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||+|++.+++...+++.+..++ ++.+.+++++|+++......+..-...............++..+.++++.++..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLA--SQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 379999999999999999999988 445689999999885432100000000000000001122334444555543321
Q ss_pred cceE-EEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcC
Q 035624 540 GAVS-INTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDH 614 (775)
Q Consensus 540 ~~v~-v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr 614 (775)
+. ++..+. .++..+.|++.|+++++|+||||.|++.+.. .+ +|++.++|++++||||.++..+
T Consensus 85 --~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~------~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 85 --IDPAHRWLV---WGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LL------LGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp --CCGGGEEEE---ESCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEECC
T ss_pred --CCcceEEEe---cCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE------ecchHHHHHHhCCCCEEEEeCC
Confidence 22 122222 3789999999999999999999999987755 44 7788999999999999988654
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.17 E-value=3.5e-11 Score=116.65 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=92.6
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccch-hhh-------hhhhcccccccccchHHHHHHH
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSI-FVS-------HQKKKKNFSAYSYSENVIVSFK 532 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~-~~~-------~~~~~~~~~~~~~~~~i~~~f~ 532 (775)
|||+|++.+++...+++.+..++ ++.+.+++++|+++.+...... -.. ....+...+.....++.++.+.
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRN--KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC--CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 5567899999998743221100 000 0000000000011222333332
Q ss_pred HccccCCcceEEEE--EEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEE
Q 035624 533 KFGGLRWGAVSINT--FTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGI 610 (775)
Q Consensus 533 ~~~~~~~~~v~v~~--~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgi 610 (775)
+..+. .+++++. .+. .++..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.|
T Consensus 85 ~~~~~--~g~~~~~~~~~~---~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVlv 153 (170)
T 2dum_A 85 EEVKR--AFRAKNVRTIIR---FGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVLI 153 (170)
T ss_dssp HHHHH--HTTCSEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHH--cCCceeeeeEEe---cCChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEEE
Confidence 22211 2344444 333 3689999999999999999999999987665544 788999999999999999
Q ss_pred EEcCC
Q 035624 611 LIDHG 615 (775)
Q Consensus 611 lvdr~ 615 (775)
+..+.
T Consensus 154 v~~~~ 158 (170)
T 2dum_A 154 IKEVD 158 (170)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 86554
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.15 E-value=4.3e-11 Score=115.56 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=92.5
Q ss_pred ceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEE--EeecccCCccchhhhhhhhcccccccccchHHHHHHHHccc
Q 035624 459 ELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNAL--HLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGG 536 (775)
Q Consensus 459 e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~l--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 536 (775)
.-|||+|++.++....+++.+..++ + .+.+++++ |+++.+....+...... +...+.....++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA--~-~~a~l~ll~a~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIA--G-ADAKLIIASAYLPQHEDARAADILKDE--SYKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHH--T-TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHh--C-CCCEEEEEEeeeccCcccccccccccH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 4 56899999 88875432011000000 0000112233444444444332
Q ss_pred cCCcceE-EEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcC
Q 035624 537 LRWGAVS-INTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDH 614 (775)
Q Consensus 537 ~~~~~v~-v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr 614 (775)
. .+++ ++..+. .++..+.|++.|+++++|+||||.|++.+..+. .+|++.++|++++||||.++..+
T Consensus 92 ~--~gv~~v~~~v~---~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSva~~vl~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 92 N--AGAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTIAGR------LLGSVPANVSRRAKVDVLIVHTT 159 (163)
T ss_dssp T--TTCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHH------HTBBHHHHHHHHTTCEEEEECCC
T ss_pred H--cCCCeEEEEEe---cCCHHHHHHHHHHhcCCCEEEECCCCCCcccce------eeccHHHHHHHhCCCCEEEEeCC
Confidence 2 3455 665444 478999999999999999999999988765433 37888999999999999988644
No 15
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.15 E-value=1.2e-10 Score=113.53 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=88.6
Q ss_pred eeEEEEeecCC---------ChhhHHHHHHhhCCCC-CCCcEEEEEEeecccCCccc----hhh-hhhhhcccccccccc
Q 035624 460 LQIVCCIYIPS---------NISSAINLLSISCPRN-ECPTVVNALHLIKLSDQATS----IFV-SHQKKKKNFSAYSYS 524 (775)
Q Consensus 460 ~rILvcv~~~~---------~~~~li~l~~~~~~~~-~~~~~v~~lhlvel~~~~~~----~~~-~~~~~~~~~~~~~~~ 524 (775)
-|||+|++.++ ....+++.+..++..+ ....+++++|+++....... ... .....+...+.....
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 48999999999 8899999998865322 25689999999864321110 000 000000000001112
Q ss_pred hHHHHHHHHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccC
Q 035624 525 ENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKA 604 (775)
Q Consensus 525 ~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~A 604 (775)
++.++.+.+..+. .+++++..+. .++..+.|++.|+++++|+||||.||+.+..+.+ +|++.++|++++
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~vl~~a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIK---TGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEE---ESCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CCCceEEEEe---cCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHHHHhCC
Confidence 2333333332221 3466665444 3689999999999999999999999987765544 788999999999
Q ss_pred CCceEEEEcCC
Q 035624 605 PCSVGILIDHG 615 (775)
Q Consensus 605 pc~Vgilvdr~ 615 (775)
||||.|+..+.
T Consensus 155 ~~pVlvv~~~~ 165 (175)
T 2gm3_A 155 ECPVMTIKRNA 165 (175)
T ss_dssp SSCEEEEECCG
T ss_pred CCCEEEEcCCc
Confidence 99999997554
No 16
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.15 E-value=2.9e-11 Score=112.84 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=88.8
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCCc
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRWG 540 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 540 (775)
|||+|++.++....+++.+..++ ++.+.+++++|+++..........+.+ ......++..+.++++.+. .
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~--~ 73 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEA--EAHGARLIVVHAYEPVPDYLGEPFFEE------ALRRRLERAEGVLEEARAL--T 73 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--H
T ss_pred eEEEEeCCCHHHHHHHHHHHHHH--hhcCCEEEEEEEecCCCccccccchHH------HHHHHHHHHHHHHHHHHHH--c
Confidence 79999999999999999998887 445679999999873211000000000 0001112233344444332 1
Q ss_pred ce-EEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 541 AV-SINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 541 ~v-~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
++ +++..+. .++..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.++
T Consensus 74 g~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLL---EGVPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEE---ESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEE---ecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 23 3333223 3689999999999999999999999987766544 7889999999999999886
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.11 E-value=3.1e-11 Score=115.27 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=91.7
Q ss_pred eeEEEEee--cCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHcccc
Q 035624 460 LQIVCCIY--IPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGL 537 (775)
Q Consensus 460 ~rILvcv~--~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 537 (775)
-|||+|++ ++++...+++.+..++ ++.+.+++++|+++.+..........+. ..+.....++.++.+.+..++
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLA--HDYDVPLGICSVLESEDINIFDSLTPSK---IQAKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHH--HHHTCCEEEEEEECCCCTTCCCSSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEEeCCCccccccCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 47999999 9999999999998888 4456789999999865421110000000 000111223333333333222
Q ss_pred CCcce-EEEEEEEEcCCCCcHHHHHHH-HhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 538 RWGAV-SINTFTAISPLDLMHDDICTL-ALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 538 ~~~~v-~v~~~~~vs~~~~m~~~I~~~-a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.++ .++..+.. .++..+.|++. |+++++|+||||.||+.+.+ .+ +|++.++|++++||||.++
T Consensus 91 --~g~~~~~~~v~~--~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 --RGVNQVEPLVYE--GGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp --HTCSSEEEEEEE--CSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEEEEE
T ss_pred --cCCCceEEEEEe--CCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee------ecchHHHHHHhCCCCEEEe
Confidence 234 35554442 27899999999 99999999999999987654 23 7788999999999999886
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.05 E-value=2.5e-10 Score=106.40 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=90.8
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhccccccc-ccchHHHHHHHHccccCC
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAY-SYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~f~~~~~~~~ 539 (775)
|||+|++.+++...+++.+..++. ++.+.+++++|+++.+........... +...+.. ...++.++.+.+..++
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~-~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~-- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFG-KDADCTLTLIHVKPEFMLYGEAVLAAY--DEIEMKEEEKAKLLTQKFSTFFTE-- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT-TCTTEEEEEEEEECCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhc-cCCCCEEEEEEEecCCCcccccccCcH--HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 799999999999999999999872 234589999999986643211100000 0000011 1223344444433322
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.+++++..+. .++..+.|++.|+ ++|+||||.|++.+.++.+ |++.++|++++||||.++
T Consensus 78 ~g~~~~~~v~---~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-------Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 KGINPFVVIK---EGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-------ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp TTCCCEEEEE---ESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-------CCTTCHHHHHCSSCEEEE
T ss_pred CCCCeEEEEe---cCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-------CcHHHHHHhcCCCCEEEe
Confidence 3466665444 3689999999998 9999999999987766544 445799999999999886
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.00 E-value=1.3e-09 Score=101.74 Aligned_cols=134 Identities=7% Similarity=0.037 Sum_probs=88.0
Q ss_pred eEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecc-cCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 461 QIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKL-SDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 461 rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
|||+|++.+++...+++.+..++ ++.+.+++++|+++- +....... .....+.. ....++..+.++++.++.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~~~~~~~- 76 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTGLI-DVNMSSMQ---DRISTETQKALLDLAESV- 76 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCCCE-EHHHHHHT---TCCCCHHHHHHHHHHHHS-
T ss_pred eEEEEecCchhhHHHHHHHHHHH--HhcCCEEEEEEEecCchhhhcccc-ccchHHHH---HHHHHHHHHHHHHHHHHc-
Confidence 79999999999999999998888 445689999999842 32111100 00000000 011123333444443332
Q ss_pred cceEE-EEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcC
Q 035624 540 GAVSI-NTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDH 614 (775)
Q Consensus 540 ~~v~v-~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr 614 (775)
++.+ +..+. .++..+.|++.|+++++|+||||.| +.+.+ . +|++.++|++++||||.++..+
T Consensus 77 -~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~-------~-lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 77 -DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWS-------K-LMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp -SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCHH-------H-HHHHHHHHHTTCCSEEEEEECC
T ss_pred -CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhh-------h-hcchHHHHHhcCCCCEEEeeCC
Confidence 2232 22222 3688999999999999999999998 64422 1 5899999999999999998654
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.89 E-value=4.3e-09 Score=97.94 Aligned_cols=128 Identities=8% Similarity=-0.005 Sum_probs=82.0
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEee-cc-cCCc-cch-hhhhhhhcccccccccchHHHHHHHHc-
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLI-KL-SDQA-TSI-FVSHQKKKKNFSAYSYSENVIVSFKKF- 534 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlv-el-~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~- 534 (775)
-|||+|++.++....+++.+..++ ++.+.+++++|++ +. +... ... ..+... +...+.....++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLERANVTFGLPFPP-EIKEESKKRIERRLREVWEKL 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHHHHHHHHCCCCCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHH--HHcCCeEEEEEEecccccccccccccCCCCCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999998 5567899999998 63 2100 000 000000 00000001122223222221
Q ss_pred cccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 535 GGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 535 ~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.+. .+ +++..+. .++..+.|++.|+++++|+||||.||+ ++.++|++++||||.++
T Consensus 82 ~~~--~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 TGS--TE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HSC--CC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred hcc--CC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 111 22 4444333 478999999999999999999999876 34689999999999875
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.77 E-value=6e-09 Score=110.06 Aligned_cols=137 Identities=10% Similarity=-0.003 Sum_probs=90.7
Q ss_pred ceeEEEEeecCCC-------hhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHH
Q 035624 459 ELQIVCCIYIPSN-------ISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSF 531 (775)
Q Consensus 459 e~rILvcv~~~~~-------~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 531 (775)
.-|||+|++.++. ...+++.+..++ +..+.+++++|+++.+...... +... ......++..+.+
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~--~~~~-----~~~~~~~~~~~~l 204 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIA--GLAKATLHVISAHPSPMLSSAD--PTFQ-----LSETIEARYREAC 204 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEEEC-----------CHH-----HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHH--HHcCCeEEEEEEecCccccccC--chhH-----HHHHHHHHHHHHH
Confidence 4589999999998 788999888887 4456899999999855432110 0000 0000112223333
Q ss_pred HHccccCCcceE-EEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEE
Q 035624 532 KKFGGLRWGAVS-INTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGI 610 (775)
Q Consensus 532 ~~~~~~~~~~v~-v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgi 610 (775)
+++.++. ++. ++..+. .++..+.|++.|+++++|+||||.||+.+..+.+ +|++.++|++++||||.+
T Consensus 205 ~~~~~~~--g~~~~~~~v~---~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVLv 273 (290)
T 3mt0_A 205 RTFQAEY--GFSDEQLHIE---EGPADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVLV 273 (290)
T ss_dssp HHHHHHH--TCCTTTEEEE---ESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEEE
T ss_pred HHHHHHc--CCCcceEEEe---ccCHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEEE
Confidence 4443321 121 122112 3689999999999999999999999998877655 789999999999999998
Q ss_pred EEcCC
Q 035624 611 LIDHG 615 (775)
Q Consensus 611 lvdr~ 615 (775)
+..++
T Consensus 274 v~~~~ 278 (290)
T 3mt0_A 274 LKPDD 278 (290)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 86443
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.70 E-value=6.9e-09 Score=110.91 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=91.9
Q ss_pred ceeEEEEeecCCC-------hhhHHHHHHhhCCCCCC--CcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHH
Q 035624 459 ELQIVCCIYIPSN-------ISSAINLLSISCPRNEC--PTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIV 529 (775)
Q Consensus 459 e~rILvcv~~~~~-------~~~li~l~~~~~~~~~~--~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 529 (775)
.-|||+|++.++. ...+++.+..++ +.. +.+++++|+.+.+........+.. ..........++..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la--~~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 231 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLS--HRIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLI 231 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHH--HHHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHH--HhccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHH
Confidence 4589999999884 477777777766 223 578999999986543221000000 000000011123334
Q ss_pred HHHHccccCC-cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCce
Q 035624 530 SFKKFGGLRW-GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSV 608 (775)
Q Consensus 530 ~f~~~~~~~~-~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~V 608 (775)
.++++.++.. ..+..+ +. .++..+.|++.|+++++||||||.||++++.+. .+|+++++|++++||||
T Consensus 232 ~l~~~~~~~~~~~~~~~--v~---~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~pV 300 (319)
T 3olq_A 232 AMKELRQKFSIPEEKTH--VK---EGLPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKCDL 300 (319)
T ss_dssp HHHHHHHHTTCCGGGEE--EE---ESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHhCCCcccEE--Ee---cCCcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCCCE
Confidence 4444443322 122222 22 368899999999999999999999998876543 48999999999999999
Q ss_pred EEEEcCC
Q 035624 609 GILIDHG 615 (775)
Q Consensus 609 gilvdr~ 615 (775)
.++..++
T Consensus 301 Lvv~~~~ 307 (319)
T 3olq_A 301 LAIKPDG 307 (319)
T ss_dssp EEECCTT
T ss_pred EEECCCC
Confidence 9986655
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.69 E-value=2e-08 Score=106.22 Aligned_cols=123 Identities=7% Similarity=0.057 Sum_probs=91.4
Q ss_pred CceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHcccc
Q 035624 458 SELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGL 537 (775)
Q Consensus 458 ~e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 537 (775)
..-|||+|++.++....+++.+..++ +..+.+++++|+.+... . ++.++.+.++.++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la--~~~~~~l~ll~v~~~~~--------~-------------~~~l~~~~~~l~~ 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVV--KKTGGELHIIHVSEDGD--------K-------------TADLRVMEEVIGA 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEECSSSC--------C-------------HHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHh--hhcCCEEEEEEEccCch--------H-------------HHHHHHHHHHHHH
Confidence 34689999999999999999988887 44567899999987432 0 1122222222222
Q ss_pred CCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcC
Q 035624 538 RWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDH 614 (775)
Q Consensus 538 ~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr 614 (775)
.+++++..+. .++..+.|++.|+++++|+||||.+++.+..+. .+|+++++|++++||||.++..+
T Consensus 226 --~~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 226 --EGIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVCKRG 291 (294)
T ss_dssp --TTCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEECSC
T ss_pred --cCCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEECCC
Confidence 2345555333 479999999999999999999999998765543 48999999999999999988543
No 24
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.68 E-value=1.1e-07 Score=89.08 Aligned_cols=127 Identities=14% Similarity=0.222 Sum_probs=85.8
Q ss_pred CccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC----------chhhhhHHHHHHHhhcC---C-
Q 035624 629 DSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDV----------DWETILDSEVLRDIKKT---E- 694 (775)
Q Consensus 629 ~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~---~- 694 (775)
...++|++++.|.++.+.|+++|.++|+..+++++++|+.++...... +..++..++.++++... .
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 82 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTS 82 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 347899999999999999999999999999999999999876433211 11122233334444321 1
Q ss_pred --CeEEEEEeecChhhHHH-HHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 695 --CMRYEKHVVENGADTVE-IVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 695 --~v~y~e~~V~~g~~i~~-~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
.+.+.-..-+-..++.+ ++++ .++||+++|+|+. .++.+| -+|...+-+... ++|+||||.
T Consensus 83 ~~~~~~~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 83 APNLKTEISYGIPKHTIEDYAKQH--PEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCCCEEEEEEECHHHHHHHHHHHS--TTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred CcceEEEEecCChHHHHHHHHHhh--cCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 22221111122445666 6666 8899999999963 223333 588888888888 889999984
No 25
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.55 E-value=1.2e-07 Score=88.90 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCC----C------C----CCchhhhhHHHHHHHhh----c
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASD----D------G----DVDWETILDSEVLRDIK----K 692 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~----~------~----~~~~~~~~d~~~~~~~~----~ 692 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.. . . ..+..++..++.++++. .
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999986421 0 0 01122233333444443 2
Q ss_pred CC-Ce---EEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEE
Q 035624 693 TE-CM---RYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLV 768 (775)
Q Consensus 693 ~~-~v---~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlv 768 (775)
.. .+ .+.-..=+-.+++.+++++ .++||+++|+|+. .++.+| -+|...+-+..+ ++|+|||
T Consensus 82 ~g~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 82 LGVPADKVRAFVKGGRPSRTIVRFARK--RECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp TTCCGGGEEEEEEESCHHHHHHHHHHH--TTCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSSCEEE
T ss_pred cCCCccceEEEEecCCHHHHHHHHHHH--hCCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCCCEEE
Confidence 21 11 2211111224557777776 7899999999963 223232 578888888888 8899998
Q ss_pred E
Q 035624 769 V 769 (775)
Q Consensus 769 v 769 (775)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 26
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.55 E-value=2.1e-07 Score=86.80 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=80.0
Q ss_pred ceEEEEecCCcC--hHHHHHHHHHHhhCCCeEEEEEEeeecCCCC--------C-Cchhhh---hHHHHHHHhhcC---C
Q 035624 632 SKVALLFLGGND--DREALTLAKRMGRDNKVRLTVVHFIAASDDG--------D-VDWETI---LDSEVLRDIKKT---E 694 (775)
Q Consensus 632 ~~i~~~f~gg~d--dreAl~~a~rma~~~~~~ltvl~~~~~~~~~--------~-~~~~~~---~d~~~~~~~~~~---~ 694 (775)
++|++++.|+++ .+.|+++|.++|+..+++++++|+.++.... . .+..++ ...+.++++..+ +
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999 9999999999999999999999998753211 0 011111 122223333222 1
Q ss_pred --CeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 695 --CMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 695 --~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
.+.+.-..=.-..++.+++++ .++||++||+|++ |+.+| -+|.+.+-+..+ ++|+||||.
T Consensus 82 ~~~v~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~-------~~~~~----~~Gs~~~~v~~~---~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPKDKILALAKS--LPADLVIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHHHHHHHHHHH--TTCSEEEEESSCT-------TCCSC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred CCceEEEEEecChHHHHHHHHHH--hCCCEEEEeCCCC-------CCeee----eeccHHHHHHHh---CCCCEEEeC
Confidence 122211111224456666776 6899999999941 23232 589999988888 889999983
No 27
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.53 E-value=4.9e-07 Score=86.32 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=85.7
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecC-----C---CC-------CCc------h---hhhhHHHH
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAAS-----D---DG-------DVD------W---ETILDSEV 686 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~-----~---~~-------~~~------~---~~~~d~~~ 686 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++. . .. ..+ . .++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999998754 1 11 110 0 01122333
Q ss_pred HHHhhcC---CCeEEEEEeec--ChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCC
Q 035624 687 LRDIKKT---ECMRYEKHVVE--NGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFG 761 (775)
Q Consensus 687 ~~~~~~~---~~v~y~e~~V~--~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~ 761 (775)
++++... ..+.+.....+ -+.+|.+++++ .++|||++|+|+. .++.+| -+|.+.+-+..+
T Consensus 85 l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~------~~~~~~----~~GSv~~~vl~~--- 149 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDIIVVGIPHEEIVKIAED--EGVDIIIMGSHGK------TNLKEI----LLGSVTENVIKK--- 149 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCS------SCCTTC----SSCHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHH--cCCCEEEEcCCCC------CCccce----EecchHHHHHHh---
Confidence 4444321 22222212211 13557777777 7899999999963 233333 589999999888
Q ss_pred CcccEEEEEee
Q 035624 762 NKCSVLVVQQQ 772 (775)
Q Consensus 762 ~~~svlvvqq~ 772 (775)
++|+||||...
T Consensus 150 ~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 SNKPVLVVKRK 160 (162)
T ss_dssp CCSCEEEECCC
T ss_pred CCCCEEEEeCC
Confidence 88999999754
No 28
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.51 E-value=2.6e-07 Score=85.72 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=83.4
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCC--CC----C--CchhhhhHHHHHHHhhcC-C--CeEEE
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASD--DG----D--VDWETILDSEVLRDIKKT-E--CMRYE 699 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~--~~----~--~~~~~~~d~~~~~~~~~~-~--~v~y~ 699 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.. .. + .+..++..++.++++..+ + .+.+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 81 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL 81 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEEE
Confidence 479999999999999999999999999999999999986432 11 0 011122334445444321 1 22221
Q ss_pred EEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 700 KHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 700 e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
-..=+-..++.+++++ .++|||++|+|+.. ++.++ -+|.+.+-+..+ ++++||||.
T Consensus 82 ~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 82 LLEGVPAEAILQAARA--EKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp EEESSHHHHHHHHHHH--TTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH---CSSCEEEEC
T ss_pred EEecCHHHHHHHHHHH--cCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc---CCCCEEEeC
Confidence 1111124557777777 78999999999631 23222 489888888888 889999983
No 29
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.51 E-value=1.1e-07 Score=101.26 Aligned_cols=134 Identities=13% Similarity=0.030 Sum_probs=89.9
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccc-hHHHHHHHHccccC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYS-ENVIVSFKKFGGLR 538 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~f~~~~~~~ 538 (775)
-+||+|++.++....+++.+..++ +..+..++++|+.+..... +. ... ...+..... +.+.+.++.+.+.
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~-~~--~~~---~~~~~~~~~~~~l~~~~~~~~~~- 242 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEA--SRRNVDLVALHAWSDVDVS-EW--PGI---DWPATQSMAEQVLAERLAGWQER- 242 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHH--HHTTCCEEEEEESCSSCCT-TC--SSC---CHHHHHHHHHHHHHHHHTTHHHH-
T ss_pred CeEEEEeCCChHHHHHHHHHHHHH--HhcCCEEEEEEEeeccccc-CC--Ccc---cHHHHHHHHHHHHHHHHHHHHhh-
Confidence 479999999999999999988887 3445789999998743211 00 000 000000011 1122222223221
Q ss_pred CcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 539 WGAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 539 ~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
..++.++..+. .++..+.|.+.|+ ++|+||||.|+++++.+.+ +|+++++|++++||||.++..
T Consensus 243 ~~~~~~~~~~~---~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~~ 306 (309)
T 3cis_A 243 YPNVAITRVVV---RDQPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVARE 306 (309)
T ss_dssp CTTSCEEEEEE---SSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEECC
T ss_pred CCCCcEEEEEE---cCCHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeCC
Confidence 12456665433 4789999999997 8999999999988877655 789999999999999998853
No 30
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.51 E-value=6.3e-07 Score=82.99 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=79.3
Q ss_pred ceEEEEecCCcChHHHHHHHHHHh-hCCCeEEEEEEeeecCCCCCC---------chhh-hhHHHHHHHhhcC---CCeE
Q 035624 632 SKVALLFLGGNDDREALTLAKRMG-RDNKVRLTVVHFIAASDDGDV---------DWET-ILDSEVLRDIKKT---ECMR 697 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma-~~~~~~ltvl~~~~~~~~~~~---------~~~~-~~d~~~~~~~~~~---~~v~ 697 (775)
++|++++.|.++.+.|+++|.++| +..+++++++|+.++...... +..+ +..++.++++... ..+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 689999999999999999999999 999999999999876432210 0001 2222333333321 1222
Q ss_pred EEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEE
Q 035624 698 YEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVV 769 (775)
Q Consensus 698 y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvv 769 (775)
+. ..+..| +..+.+.+.++++||+++|+|+. .++.+| - |.+.+-+..+ ++|+||||
T Consensus 82 ~~-~~v~~g-~~~~~I~~~a~~~dliV~G~~~~------~~~~~~----~-Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 82 PF-VVIKEG-EPVEMVLEEAKDYNLLIIGSSEN------SFLNKI----F-ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp CE-EEEEES-CHHHHHHHHHTTCSEEEEECCTT------STTSSC----C-CCTTCHHHHH---CSSCEEEE
T ss_pred eE-EEEecC-ChHHHHHHHHhcCCEEEEeCCCc------chHHHH----h-CcHHHHHHhc---CCCCEEEe
Confidence 22 223334 24444444445999999999963 223222 2 8888888877 78999998
No 31
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.50 E-value=3.4e-07 Score=87.99 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=81.9
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEE--EeeecCCC-C------C--CchhhhhHHHHHHHhhcC---CCe
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVV--HFIAASDD-G------D--VDWETILDSEVLRDIKKT---ECM 696 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl--~~~~~~~~-~------~--~~~~~~~d~~~~~~~~~~---~~v 696 (775)
.++|+++++|.+..+.|+++|.++|+ .+++++++ |+.++... . + .+..++..++.++++... ..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999 99999999 88754321 0 0 011122223334433221 112
Q ss_pred E-EEEEeecC--hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEee
Q 035624 697 R-YEKHVVEN--GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQQ 772 (775)
Q Consensus 697 ~-y~e~~V~~--g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq~ 772 (775)
. +.....+. .+++.+++++ .++|||+||+|+. .++.+| -+|.+.+-+... ++|+||||...
T Consensus 96 ~~v~~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~------~~~~~~----~lGSva~~vl~~---a~~PVlvV~~~ 159 (163)
T 1tq8_A 96 KNVEERPIVGAPVDALVNLADE--EKADLLVVGNVGL------STIAGR----LLGSVPANVSRR---AKVDVLIVHTT 159 (163)
T ss_dssp CEEEEEEECSSHHHHHHHHHHH--TTCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---TTCEEEEECCC
T ss_pred CeEEEEEecCCHHHHHHHHHHh--cCCCEEEECCCCC------Ccccce----eeccHHHHHHHh---CCCCEEEEeCC
Confidence 2 22222221 3556677776 8899999999963 233333 588898988888 78999999764
No 32
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.50 E-value=3.8e-07 Score=86.90 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=85.2
Q ss_pred cceEEEEecC-CcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhh----cC-CCeEEEEEeec
Q 035624 631 FSKVALLFLG-GNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIK----KT-ECMRYEKHVVE 704 (775)
Q Consensus 631 ~~~i~~~f~g-g~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~----~~-~~v~y~e~~V~ 704 (775)
.++|+++++| .+..+.|+++|.++|+..+++++++++.++..... +..++..++.++++. .. -.+.. +..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEE-HLLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceE-EEEec
Confidence 6799999999 99999999999999999999999999987543221 222233333444443 22 12222 22232
Q ss_pred C---hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 705 N---GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 705 ~---g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
. .+++.+++++ .++|||++|+++. +++.+| -+|.+.+-+... ++++||||+
T Consensus 102 ~G~~~~~I~~~a~~--~~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 102 GKEPPDDIVDFADE--VDAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSCHHHHHHHHHHH--TTCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred CCCHHHHHHHHHHH--cCCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence 2 3456666676 6899999999963 223222 589999988888 889999984
No 33
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.50 E-value=2.6e-07 Score=87.01 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=80.7
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCC------------C--CchhhhhHHHHHHHhhcC---
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDG------------D--VDWETILDSEVLRDIKKT--- 693 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~------------~--~~~~~~~d~~~~~~~~~~--- 693 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+.++.... + .+..++..++.++++..+
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999999999999998653210 0 011112233334443322
Q ss_pred C--CeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEe
Q 035624 694 E--CMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQ 771 (775)
Q Consensus 694 ~--~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq 771 (775)
+ .....+-.. .+++.+++++ .++|||++|+|+.. ++. --+|.+.+-+..+ ++|+||||..
T Consensus 86 ~~~~~~~~~g~~--~~~I~~~a~~--~~~dliV~G~~~~~------~~~-----~~~Gs~~~~vl~~---~~~pVlvv~~ 147 (150)
T 3tnj_A 86 DPAHRWLVWGEP--REEIIRIAEQ--ENVDLIVVGSHGRH------GLA-----LLLGSTANSVLHY---AKCDVLAVRL 147 (150)
T ss_dssp CGGGEEEEESCH--HHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEEC
T ss_pred CcceEEEecCCH--HHHHHHHHHH--cCCCEEEEecCCCC------CcC-----eEecchHHHHHHh---CCCCEEEEeC
Confidence 2 121222222 3457777777 78999999999631 222 3688888888888 8899999976
Q ss_pred e
Q 035624 772 Q 772 (775)
Q Consensus 772 ~ 772 (775)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.49 E-value=4.4e-07 Score=87.45 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=84.3
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCC-------C--------CC-c---hhhhhHHHHHHHhh
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDD-------G--------DV-D---WETILDSEVLRDIK 691 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~-------~--------~~-~---~~~~~d~~~~~~~~ 691 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+..+... . +. + ..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999865321 0 00 1 11122233344443
Q ss_pred cC-----CCeEEEEEee--cChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcc
Q 035624 692 KT-----ECMRYEKHVV--ENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKC 764 (775)
Q Consensus 692 ~~-----~~v~y~e~~V--~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 764 (775)
.. -.+.+..... +-..++.+++++ .++|||++|+|+.. ++.+| -+|.+.+-+..+ ++|
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~---~~~ 149 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK---TKK 149 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCC------C--TT----CCCHHHHHHHHH---CSS
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHHH--cCCCEEEECCCCCC------ccccc----eechHHHHHHHh---CCC
Confidence 21 1122200111 113457777777 78999999999631 23232 589888888888 889
Q ss_pred cEEEEEee
Q 035624 765 SVLVVQQQ 772 (775)
Q Consensus 765 svlvvqq~ 772 (775)
+||||...
T Consensus 150 PVlvv~~~ 157 (170)
T 2dum_A 150 PVLIIKEV 157 (170)
T ss_dssp CEEEECCC
T ss_pred CEEEEccC
Confidence 99999754
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.46 E-value=7.4e-07 Score=82.84 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=82.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec--CCCCC---------CchhhhhHHHHHHHhhcC---C--
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA--SDDGD---------VDWETILDSEVLRDIKKT---E-- 694 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~--~~~~~---------~~~~~~~d~~~~~~~~~~---~-- 694 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+..+ ..... .+..++..++.++++..+ +
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPIS 81 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4799999999999999999999999999999999999843 11111 000112223334443221 1
Q ss_pred CeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEEeee
Q 035624 695 CMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQQQR 773 (775)
Q Consensus 695 ~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvqq~~ 773 (775)
.....+-.+ ..++.+++++ .++|||++|+| .. ++. .+|.+.+-+..+ ++++||||....
T Consensus 82 ~~~~~~g~~--~~~I~~~a~~--~~~dliV~G~~-~~------~~~------~lgs~~~~vl~~---~~~pVlvv~~~~ 140 (141)
T 1jmv_A 82 EKLSGSGDL--GQVLSDAIEQ--YDVDLLVTGHH-QD------FWS------KLMSSTRQVMNT---IKIDMLVVPLRD 140 (141)
T ss_dssp CEEEEEECH--HHHHHHHHHH--TTCCEEEEEEC-CC------CHH------HHHHHHHHHHTT---CCSEEEEEECCC
T ss_pred EEEEecCCH--HHHHHHHHHh--cCCCEEEEeCC-Cc------hhh------hhcchHHHHHhc---CCCCEEEeeCCC
Confidence 112222222 3558888887 88999999998 31 221 257778888877 889999998653
No 36
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.42 E-value=7.7e-07 Score=84.40 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=83.2
Q ss_pred ccceEEEEec--CCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCC--------chhhhhHHHHHHHhhcC----C-
Q 035624 630 SFSKVALLFL--GGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDV--------DWETILDSEVLRDIKKT----E- 694 (775)
Q Consensus 630 ~~~~i~~~f~--gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~----~- 694 (775)
..++|++++. |.++.+.|+++|.++|+..+++++++|+.++...... +..++..++.++++... .
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999 9999999999999999999999999999876432110 11122233334444321 1
Q ss_pred -CeEEEEEe-ecChhhHHHH-HHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhcCCCCCcccEEEEE
Q 035624 695 -CMRYEKHV-VENGADTVEI-VHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLASKDFGNKCSVLVVQ 770 (775)
Q Consensus 695 -~v~y~e~~-V~~g~~i~~~-i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svlvvq 770 (775)
.+.+.-.. -.-..++.++ +++ .++|||++|+|+. +++ . . -+|.+.+-+... ++|+||||.
T Consensus 94 ~~~~~~v~~~g~~~~~I~~~~a~~--~~~DlIV~G~~g~------~~~---~-~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 94 NQVEPLVYEGGDVDDVILEQVIPE--FKPDLLVTGADTE------FPH---S-K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp SSEEEEEEECSCHHHHHHHTHHHH--HCCSEEEEETTCC------CTT---S-S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred CceEEEEEeCCCHHHHHHHHHHHh--cCCCEEEECCCCC------Ccc---c-e-eecchHHHHHHh---CCCCEEEeC
Confidence 22221111 1123456666 666 7899999999963 122 1 2 489999999888 889999984
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.24 E-value=4.5e-06 Score=80.75 Aligned_cols=127 Identities=12% Similarity=0.160 Sum_probs=77.9
Q ss_pred cceEEEEecCCc---------ChHHHHHHHHHHh-hC--CCeEEEEEEeeecCC--CC------CCc--------hhhhh
Q 035624 631 FSKVALLFLGGN---------DDREALTLAKRMG-RD--NKVRLTVVHFIAASD--DG------DVD--------WETIL 682 (775)
Q Consensus 631 ~~~i~~~f~gg~---------ddreAl~~a~rma-~~--~~~~ltvl~~~~~~~--~~------~~~--------~~~~~ 682 (775)
.++|++++.|.+ ..+.|+++|.+++ +. .+++++++|+..+.. .. .+. ..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 689999999999 8899999999986 54 699999999975421 10 000 01112
Q ss_pred HHHHHHHhhcC---CCeEEEEEeecC--hhhHHHHHHhcccCCcEEEEcccCCCCCccccccccCCCCCccccchhhhhc
Q 035624 683 DSEVLRDIKKT---ECMRYEKHVVEN--GADTVEIVHSMVNQYDLIIVGRRHNLECPQTSCLDQWSEFPELGVLGDLLAS 757 (775)
Q Consensus 683 d~~~~~~~~~~---~~v~y~e~~V~~--g~~i~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las 757 (775)
.++.++++... ..+.+.-...+. ..+|.+++++ .++|||+||+|+. .++.+| -+|.+.+-+..
T Consensus 85 ~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~------~~~~~~----~~Gsva~~vl~ 152 (175)
T 2gm3_A 85 GLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKR--VRPDFLVVGSRGL------GRFQKV----FVGTVSAFCVK 152 (175)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHH--HCCSEEEEEECCC------C------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHH--hCCCEEEEeCCCC------Chhhhh----hcCchHHHHHh
Confidence 23344444322 122332222221 3456677776 6899999999963 233333 58888888888
Q ss_pred CCCCCcccEEEEEee
Q 035624 758 KDFGNKCSVLVVQQQ 772 (775)
Q Consensus 758 ~d~~~~~svlvvqq~ 772 (775)
+ ++|+||||...
T Consensus 153 ~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 153 H---AECPVMTIKRN 164 (175)
T ss_dssp H---CSSCEEEEECC
T ss_pred C---CCCCEEEEcCC
Confidence 8 88999999754
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.14 E-value=1.6e-06 Score=90.09 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=79.3
Q ss_pred eeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccCC
Q 035624 460 LQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLRW 539 (775)
Q Consensus 460 ~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 539 (775)
-|||+|++.++....+++.+..++. ..+.+++++|+.+.+. ..+ ...++..+.+++
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~--~~~a~l~ll~v~~~~~-------~~~---------~~l~~~~~~l~~------ 210 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLAR--ALGLGVRVVSVHEDPA-------RAE---------AWALEAEAYLRD------ 210 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHH--HHTCCEEEEEECSSHH-------HHH---------HHHHHHHHHHHH------
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhh--cCCCEEEEEEEcCcHH-------HHH---------HHHHHHHHHHHH------
Confidence 4899999999999999998877763 2346799999976321 000 011222222222
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEE
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGIL 611 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgil 611 (775)
.+++++..+. .++..+.|.+.|++. |+|+||. +..+.+ +|+++++|++++||||.++
T Consensus 211 ~~~~~~~~~~---~g~~~~~i~~~a~~~--dliV~G~----~~~~~~------~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 211 HGVEASALVL---GGDAADHLLRLQGPG--DLLALGA----PVRRLV------FGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp TTCCEEEEEE---CSCHHHHHHHHCCTT--EEEEEEC----CCSCCS------SCCHHHHHHHHCSSCEEEE
T ss_pred cCCceEEEEe---CCChHHHHHHHHHhC--CEEEECC----cccccE------eccHHHHHHhcCCCCEEEe
Confidence 2455555333 478999999999988 9999998 333433 7788999999999999886
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.06 E-value=1.1e-05 Score=74.59 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=37.2
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEee-e
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFI-A 669 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~-~ 669 (775)
.++|++++.|.++.+.|+++|.++|+..+++++++|+. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 67999999999999999999999999999999999998 5
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.74 E-value=0.022 Score=60.82 Aligned_cols=102 Identities=11% Similarity=-0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcccChHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH---hh--ccHHH
Q 035624 111 MGNIGIALFIFQSGVKMDLSMVSKVGRK---ALYIGILSVISPLVALIPTFMVPTGTGPSGFFITPLY---YV--TSFPV 182 (775)
Q Consensus 111 l~~igl~~llF~~Gle~d~~~lk~~~~~---~~~i~~~~~l~p~~~~~~~~~~l~~~~~~~l~ig~~l---s~--Ts~~v 182 (775)
....++.++||..|++++++++++..++ ........+++--++++++++.++.+. .+..|.++ ++ ++..+
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~--~~~~Glil~~~~P~~~~s~v 121 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA--EIAVGVILVGCCPGGTASNV 121 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHhcCCchhHHHH
Confidence 3446788999999999999999865443 333334455443345666666664432 23333333 22 22233
Q ss_pred HHHHHhhccccCChhHHHHHHHHHHHhHHHHHHHHHHHH
Q 035624 183 IFCLLTHLKILNSELGRLAQSSAIVADFLSYATVLLLTV 221 (775)
Q Consensus 183 v~~iL~el~~~~s~~g~l~ls~a~i~D~~~~i~l~~~~~ 221 (775)
+..+ .+.+ ..++.+...++.+++.+++-+...
T Consensus 122 ----~t~~--a~Gd-~~la~~~~~~stll~~~~~Pl~~~ 153 (332)
T 3zux_A 122 ----MTYL--ARGN-VALSVAVTSVSTLTSPLLTPAIFL 153 (332)
T ss_dssp ----HHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHH--hCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2333 256777788888888877654443
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.04 E-value=0.64 Score=47.76 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=130.5
Q ss_pred ceeEEEEeecCCChhhHHHHHHhhCCCCCCCcEEEEEEeecccCCccchhhhhhhhcccccccccchHHHHHHHHccccC
Q 035624 459 ELQIVCCIYIPSNISSAINLLSISCPRNECPTVVNALHLIKLSDQATSIFVSHQKKKKNFSAYSYSENVIVSFKKFGGLR 538 (775)
Q Consensus 459 e~rILvcv~~~~~~~~li~l~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 538 (775)
.-.|||++.+|..-.++++++..+...+ ..+.+.++.. ......+ .++ .++++.|-++
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p--~~~~~~l---------------~~q-l~~l~~~l~~- 77 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAG--NTDKENL---------------LSQ-LPSISEGFQE- 77 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC-----CTTCH---------------HHH-HHHHHHHHHH-
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEcc--CCCccHH---------------HHH-HHHHHHHHHh-
Confidence 3579999999999999999999998544 5788888843 2211100 011 1344545433
Q ss_pred CcceEEEEEEEEcCCCCcHHHHHHHHhhc-----CCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEc
Q 035624 539 WGAVSINTFTAISPLDLMHDDICTLALDK-----LASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILID 613 (775)
Q Consensus 539 ~~~v~v~~~~~vs~~~~m~~~I~~~a~e~-----~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvd 613 (775)
.++..-. ++-.-.+.++++..+.+.. +.+.|+||+..+... ...+..+.++ +.++.-.|.++-+
T Consensus 78 -r~v~a~~--~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~-------~~~y~~~i~~-~~~~~~nVlil~~ 146 (294)
T 3g40_A 78 -EGVFSSW--TIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDR-------DEEIREIIRK-ASMYRMGVLLFSK 146 (294)
T ss_dssp -TTCEEEE--EEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG-------HHHHHHHHHH-HHHTTCEEEEEEC
T ss_pred -CCceeEE--EEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh-------hHHHHHHHHH-HHHhCceEEEEec
Confidence 2344333 3334468899999988764 568899998654321 1236666655 3455888888864
Q ss_pred CC-CCcccccccCCCCCccceEEEEecCC-----------cChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhh
Q 035624 614 HG-NLKRSVTHMDSSADSFSKVALLFLGG-----------NDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETI 681 (775)
Q Consensus 614 r~-~~~~~~~~~~~~~~~~~~i~~~f~gg-----------~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~ 681 (775)
.. .+|. + -++| =++.+| .+-.-++-+|-.+.++.++++.+..+++. +++++
T Consensus 147 ~~~~~fg--------~--~~~I-dvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~ 209 (294)
T 3g40_A 147 HPQAGLG--------R--QNLI-NLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQ 209 (294)
T ss_dssp CTTTTTT--------T--SCEE-EEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHH
T ss_pred CCccCCC--------C--CceE-EEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHH
Confidence 33 2232 1 2344 344222 23456788888888888999999999853 34555
Q ss_pred hHHHHHHHhhcC---CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccCC
Q 035624 682 LDSEVLRDIKKT---ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 682 ~d~~~~~~~~~~---~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~~ 730 (775)
..+++++++... +...+ .|. .+..+.+++ +.++||+++|-...
T Consensus 210 ~a~~~l~~Lv~~~Ri~a~~~---vv~--~~F~~il~~-s~~ADL~flGl~~~ 255 (294)
T 3g40_A 210 AAENFLQSLAELARIPNVKM---QVL--RENPIKSSK-LPFASLHIFSLDPN 255 (294)
T ss_dssp HHHHHHHHHHHHHTCCSCEE---EEE--SSCTTTSSS-CCCCSEEEEECCSS
T ss_pred HHHHHHHHHHHHhcCCceEE---Eec--CchHHHHhh-CcCCCEEEEcCCCC
Confidence 566677777543 22222 222 234456666 47899999998764
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=71.06 E-value=4.9 Score=42.36 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=39.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT 693 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 693 (775)
.++++.|.||+|+--.|.++.+.....+..+.++++.+.-.+. ...+|++++..+
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~-------et~~~v~~~~~~ 101 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ-------EMYRFRDQMVEE 101 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH-------HHHHHHHHHHHT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH-------HHHHHHHHHHHH
Confidence 4789999999999999999998876556677889987654331 234456555443
No 43
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=62.22 E-value=24 Score=34.25 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
.+|++.|.||+|.--.+.++.+.. -++.++++++.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCC
Confidence 489999999999999999888874 24678888764
No 44
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=56.96 E-value=12 Score=40.91 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=58.8
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhC-CCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC-CCeEE-EEEee-cCh
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRD-NKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT-ECMRY-EKHVV-ENG 706 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~-~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~v~y-~e~~V-~~g 706 (775)
..++++.+-||.|.--.+.++.++.+. .+.+++++|++..-. . +.+.+.++++++..+ +.-.+ .+..+ +.|
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-~----~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~ 87 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-A----NADAWVTHCENVCQQWQVPLVVERVQLAQEG 87 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-S----SHHHHHHHHHHHHHHTTCCEEEECCCCCCSS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-c----ccHHHHHHHHHHHHHcCCcEEEEEecCCCCC
Confidence 358999999999999999999998877 899999999975322 1 122344455555433 11111 11111 112
Q ss_pred hhHH--------HHHHhcccCCcEEEEcccCC
Q 035624 707 ADTV--------EIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 707 ~~i~--------~~i~~~~~~~DLiivG~~~~ 730 (775)
..+. +++.+.+.++|.++.|-|.+
T Consensus 88 ~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 88 LGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp STTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 1122 23445566799999998754
No 45
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=54.84 E-value=2.6 Score=28.36 Aligned_cols=28 Identities=0% Similarity=0.119 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHhhccc
Q 035624 165 GPSGFFITPLYYVTSFPVIFCLLTHLKI 192 (775)
Q Consensus 165 ~~~~l~ig~~ls~Ts~~vv~~iL~el~~ 192 (775)
|..++++|+++|.|++..+..++++++.
T Consensus 3 ~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 3457889999999999999999999875
No 46
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=52.24 E-value=23 Score=36.72 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred ceEEEEecCCcChHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC
Q 035624 632 SKVALLFLGGNDDREALTLAKRMG-R-----------------DNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT 693 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 693 (775)
.++++.|.||+|+--.|.++.+.. + .++..+.++++.+...+ ....+|++++..+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------pet~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------PTLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC-------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC-------HHHHHHHHHHHHH
Confidence 479999999999999999888753 1 13567889998765443 2344455555433
Q ss_pred ---CCeEE-EE----EeecChhhHHHHHHhcccCCcEEEEcccCCC
Q 035624 694 ---ECMRY-EK----HVVENGADTVEIVHSMVNQYDLIIVGRRHNL 731 (775)
Q Consensus 694 ---~~v~y-~e----~~V~~g~~i~~~i~~~~~~~DLiivG~~~~~ 731 (775)
+.+.+ .+ ....++ ..+.++. ....+.+++|.+.+.
T Consensus 127 ygl~l~v~~~~~~~~~~l~~~--~~~~~k~-~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YCLSLYESQRQSGASVNMADA--FRDFIKI-YPETEAIVIGIRHTD 169 (306)
T ss_dssp TTEEEEECCC-----CCHHHH--HHHHHHH-CTTCCEEECCCCCCS
T ss_pred cCCCEEEEeCCccccccHHHH--HHHHHhh-CCCCcEEEEEEeccc
Confidence 11111 11 111112 2233332 345789999999864
No 47
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=50.40 E-value=44 Score=36.74 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=44.3
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT 693 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 693 (775)
..++++.+.||+|.--.+.++.++.+..+.+++++|++..-. ..+.+.+.++++++..+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~ 76 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVE 76 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHH
Confidence 358999999999999999999999988899999999975321 02233455666666543
No 48
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=48.87 E-value=1.6e+02 Score=30.54 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=60.6
Q ss_pred HHHHHhhccCCCCchhHHHHhhhhhhHhhhHHHHHHHHhhcccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035624 298 LYIVGLAVPRGPPLGSALVNKFDCLVSGFFLPIFVTTSAMRIHD--LRPQSFNIFIVQNILTVAWIVLVKFGTCSLLLLY 375 (775)
Q Consensus 298 af~aGl~~~~~~~~~~~l~~~l~~~~~~~f~PifF~~~G~~id~--l~~~~~~~~~~~~~~~~vv~~~~K~l~~~l~~~~ 375 (775)
+.+.|...|+.... ++.. ....+.+.+...|++++. +... .+.| .......+.-++..++.++..++.
T Consensus 27 ~~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~~-~~~~-~~~~~~l~~~~vi~Pll~~~l~~~ 96 (332)
T 3zux_A 27 FAAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDIL-FKHP-KVVIIGVIAQFAIMPATAWCLSKL 96 (332)
T ss_dssp HHHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHHH-HHSH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HhCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666654211 2222 234566677778888887 2210 1122 222333445556677778888888
Q ss_pred hcCChHHHHHHHHH---HhhhhhHHHHHHhhhccCCCCChh-hHHHHHHHHHHHHHhHHHHHHhh
Q 035624 376 WKMHKNDAMALALI---MNAKGIVEMAFYTFASDGRYVPPN-MFRFMLGIIIVMGSIVPIFVRKL 436 (775)
Q Consensus 376 ~~~~~~~~~~lg~~---l~~rG~v~l~~~~~~~~~~ii~~~-~~~~lv~~~il~t~i~~~l~~~l 436 (775)
++.+.. ...|++ ..|-|..+.+....+ |. |.+ ......++.+++.++.|....++
T Consensus 97 ~~l~~~--~~~Glil~~~~P~~~~s~v~t~~a---~G-d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 97 LNLPAE--IAVGVILVGCCPGGTASNVMTYLA---RG-NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp TTCCHH--HHHHHHHHHHSCCCTHHHHHHHHT---TC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChH--HHHHHHHHhcCCchhHHHHHHHHh---CC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776653 333433 345566555544433 21 222 22233344444444455555544
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=41.24 E-value=27 Score=36.29 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=35.0
Q ss_pred cceEEEEecCCcChHHHHHHHHHHhhCCCeE-EEEEEeeec
Q 035624 631 FSKVALLFLGGNDDREALTLAKRMGRDNKVR-LTVVHFIAA 670 (775)
Q Consensus 631 ~~~i~~~f~gg~ddreAl~~a~rma~~~~~~-ltvl~~~~~ 670 (775)
.+++++.+.||+|.--.+.++.+..+..+.+ +++++++..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 3589999999999999999999988878888 999999754
No 50
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=40.35 E-value=3e+02 Score=28.47 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=63.4
Q ss_pred ccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEE
Q 035624 586 LESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLTVV 665 (775)
Q Consensus 586 ~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl 665 (775)
++.+-+...++.+.|-+..+.||++=..... + . .+|-+..++.++++++.+.- +..+
T Consensus 190 lenr~r~~~eiv~avr~~v~~pv~vris~~~-~------------~-------~~g~~~~~~~~~a~~l~~~G---vd~i 246 (338)
T 1z41_A 190 PENRYRFLREIIDEVKQVWDGPLFVRVSASD-Y------------T-------DKGLDIADHIGFAKWMKEQG---VDLI 246 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEEECCC-C------------S-------TTSCCHHHHHHHHHHHHHTT---CCEE
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEecCcc-c------------C-------CCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 3333344566777776666788765322221 1 1 14667778999999998753 2333
Q ss_pred EeeecCCCCC-CchhhhhHHHHHHHhhcC-CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccC
Q 035624 666 HFIAASDDGD-VDWETILDSEVLRDIKKT-ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRH 729 (775)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~ 729 (775)
++........ .........+++++++.. +.-...---+.+.++..+.+++ ..+|++.+||.-
T Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~--G~aD~V~iGR~~ 310 (338)
T 1z41_A 247 DCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQN--GRADLIFIGREL 310 (338)
T ss_dssp EEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHc--CCceEEeecHHH
Confidence 3332211000 001111233456666543 2222222234456667777776 679999999985
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=37.68 E-value=28 Score=36.12 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=50.0
Q ss_pred ceEEEEecCCcChHHHHHHHHHHh-h-----------------CCCeEEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC
Q 035624 632 SKVALLFLGGNDDREALTLAKRMG-R-----------------DNKVRLTVVHFIAASDDGDVDWETILDSEVLRDIKKT 693 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 693 (775)
.++++.|.||+|+--.|.++.+-. + .+...+.++++-|-..|.+ .. +|++++..+
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpE---T~----ef~d~~~~~ 131 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKT---LE----NFIEETSLR 131 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHH---HH----HHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHH---HH----HHHHHHHHH
Confidence 479999999999999999987741 1 1235788999877666542 22 344444432
Q ss_pred CCeEEEEEeecCh---hhHHHHHHhcccCCcEEEEcccCC
Q 035624 694 ECMRYEKHVVENG---ADTVEIVHSMVNQYDLIIVGRRHN 730 (775)
Q Consensus 694 ~~v~y~e~~V~~g---~~i~~~i~~~~~~~DLiivG~~~~ 730 (775)
-.........+.+ .+-..-+++....+|.++.|.|++
T Consensus 132 ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 132 YSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp TTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred hCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 0111111111111 112222333234699999999987
No 52
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=36.26 E-value=31 Score=35.00 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=53.1
Q ss_pred EEecCCcChHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCchhhhhHHHHHHHhhcC-CCeEEEEEee---cChhhH
Q 035624 636 LLFLGGNDDREALTLAKRMGRDNKV--RLTVVHFIAASDDGDVDWETILDSEVLRDIKKT-ECMRYEKHVV---ENGADT 709 (775)
Q Consensus 636 ~~f~gg~ddreAl~~a~rma~~~~~--~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~v~y~e~~V---~~g~~i 709 (775)
+.+.=.+.|.+|++.|.|+++..+. +++++.+=++. .++..++.+. .- +++...+..- -+...+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-------~~~~lr~ala---~GaD~vi~v~d~~~~~~~~~~~ 100 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-------VDESLRKCLA---KGADRAVRVWDDAAEGSDAIVV 100 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-------GHHHHHHHHH---TTCSEEEEECCGGGTTCCHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-------HHHHHHHHHh---cCCCEEEEEcCcccccCCHHHH
Confidence 3444478999999999999987666 89988875321 1111112221 12 3343332111 012223
Q ss_pred HHHHHhcc--cCCcEEEEcccCC-----CCCccccccccC
Q 035624 710 VEIVHSMV--NQYDLIIVGRRHN-----LECPQTSCLDQW 742 (775)
Q Consensus 710 ~~~i~~~~--~~~DLiivG~~~~-----~~~~~~~gl~~w 742 (775)
...+.+.. .+||+|+.|++.. .-.|++..+-+|
T Consensus 101 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 101 GRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 33333321 3699999999872 124555656566
No 53
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=35.06 E-value=1.6e+02 Score=29.07 Aligned_cols=76 Identities=11% Similarity=-0.029 Sum_probs=37.3
Q ss_pred hHHHHHHHHccccC-CcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHh
Q 035624 525 ENVIVSFKKFGGLR-WGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRIL 601 (775)
Q Consensus 525 ~~i~~~f~~~~~~~-~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl 601 (775)
.++.+.+++..++. .-.+.+.... .+ ..+.. .+..+.+.++++|-||+-..... ......++ +
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~-~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-----------~~~~~~~~-~ 90 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITH-YD-PYDYNSFVATSQAVIEEQPDGVMFAPTVPQ-----------YTKGFTDA-L 90 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEE-EC-SSCHHHHHHHHHHHHTTCCSEEEECCSSGG-----------GTHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEc-CC-CCCHHHHHHHHHHHHhcCCCEEEECCCChH-----------HHHHHHHH-H
Confidence 45666666665543 2234443321 11 12332 34456667788888776532110 01222223 4
Q ss_pred ccCCCceEEEEcCC
Q 035624 602 EKAPCSVGILIDHG 615 (775)
Q Consensus 602 ~~Apc~Vgilvdr~ 615 (775)
+.+..|| |++|+.
T Consensus 91 ~~~~iPv-V~~~~~ 103 (304)
T 3gbv_A 91 NELGIPY-IYIDSQ 103 (304)
T ss_dssp HHHTCCE-EEESSC
T ss_pred HHCCCeE-EEEeCC
Confidence 5567887 566665
No 54
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=34.99 E-value=71 Score=32.13 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=27.2
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEc
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILS 575 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg 575 (775)
+..++.+.+++..++..-.+.+.. . .....-.....+...++++|-||+-
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~--~-~~~~~~~~~~~~~l~~~~vdgiI~~ 78 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQ--I-DAPPRGTQQLSRLVSEGRVDGVLLQ 78 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEE--C-CSTTHHHHHHHHHHHSCSSSEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEe--C-CCChHHHHHHHHHHHhCCCcEEEEe
Confidence 445677777776654332233221 1 1111223456777778899988775
No 55
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=34.96 E-value=50 Score=31.75 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.6
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
+++++.+-||.|.--++.++++ .+.+++.++++..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 5899999999999888877654 4678888998764
No 56
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=34.96 E-value=50 Score=33.11 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCcChHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEE--Eee---cChhhHHHH
Q 035624 640 GGNDDREALTLAKRMGRDNKV--RLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEK--HVV---ENGADTVEI 712 (775)
Q Consensus 640 gg~ddreAl~~a~rma~~~~~--~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e--~~V---~~g~~i~~~ 712 (775)
=.+.|.+|++.|.|+.+. +. +++++.+-++.. ++..++.+.- .. +++...+ ... -+...+...
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a-------~~~lr~ala~-Ga-D~vi~v~~d~~~~~~~~~~~~a~~ 104 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQA-------AETLRTALAM-GA-DRAILVVAADDVQQDIEPLAVAKI 104 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGGG-------HHHHHHHHHH-TC-SEEEEEECCSSTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH-------HHHHHHHHhc-CC-CEEEEEecChhhcccCCHHHHHHH
Confidence 378999999999999987 66 899888753211 1111222221 11 3444333 211 112223333
Q ss_pred HHhcc--cCCcEEEEcccCC-----CCCccccccccC
Q 035624 713 VHSMV--NQYDLIIVGRRHN-----LECPQTSCLDQW 742 (775)
Q Consensus 713 i~~~~--~~~DLiivG~~~~-----~~~~~~~gl~~w 742 (775)
+.+.. .+||+|+.|++.. .-.|++..+-+|
T Consensus 105 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 105 LAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 33321 4699999999862 224556666666
No 57
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=33.23 E-value=1.7e+02 Score=30.57 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred CCccccchhhHHHHHHHhccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeEEE
Q 035624 584 GSLESDDQSVRNLNLRILEKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVRLT 663 (775)
Q Consensus 584 ~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~lt 663 (775)
|.++.+-+...++.+.|-+....||++=..-. + . ..+|.+..++.++++++.+.- +.
T Consensus 188 GslenR~r~~~eiv~avr~~v~~pv~vRls~~-~-------------~------~~~g~~~~~~~~la~~L~~~G---vd 244 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVWDGPLFVRISAS-D-------------Y------HPDGLTAKDYVPYAKRMKEQG---VD 244 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEEEEESC-C-------------C------STTSCCGGGHHHHHHHHHHTT---CC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEEEeccc-c-------------c------cCCCCCHHHHHHHHHHHHHcC---CC
Confidence 34544444567777888777788877622111 0 1 124667778899999998764 33
Q ss_pred EEEeeecCCCCCC-chhhhhHHHHHHHhhcC-CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccC
Q 035624 664 VVHFIAASDDGDV-DWETILDSEVLRDIKKT-ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRH 729 (775)
Q Consensus 664 vl~~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~ 729 (775)
.+++......... ........+++++++.. +.-...---+.+.++..+.+++ ..+|++.+||.-
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~--G~aD~V~iGR~~ 310 (340)
T 3gr7_A 245 LVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQN--GRADLVFLGREL 310 (340)
T ss_dssp EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHC--CCeeEEEecHHH
Confidence 4444321110000 00112233466666543 2222222234455666777776 679999999984
No 58
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.56 E-value=60 Score=33.34 Aligned_cols=74 Identities=5% Similarity=0.057 Sum_probs=39.1
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRI 600 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kV 600 (775)
+..++.+.+++..++. +..+.... + ..+.. ....+...++++|-||+-.... ++ ....+.
T Consensus 77 ~~~~~~~gi~~~a~~~--g~~~~~~~--~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---------~~----~~~~~~ 138 (338)
T 3dbi_A 77 YFSELLFHAARMAEEK--GRQLLLAD--G-KHSAEEERQAIQYLLDLRCDAIMIYPRFL---------SV----DEIDDI 138 (338)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEE--C-TTSHHHHHHHHHHHHHTTCSEEEECCSSS---------CH----HHHHHH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEe--C-CCChHHHHHHHHHHHhCCCCEEEEeCCCC---------Ch----HHHHHH
Confidence 4456666676665543 33333221 1 22322 2355666778899888743111 00 113456
Q ss_pred hccCCCceEEEEcCC
Q 035624 601 LEKAPCSVGILIDHG 615 (775)
Q Consensus 601 l~~Apc~Vgilvdr~ 615 (775)
+++.+.|| |++|+.
T Consensus 139 ~~~~~iPv-V~~~~~ 152 (338)
T 3dbi_A 139 IDAHSQPI-MVLNRR 152 (338)
T ss_dssp HHHCSSCE-EEESSC
T ss_pred HHcCCCCE-EEEcCC
Confidence 77788897 566765
No 59
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=32.34 E-value=51 Score=33.12 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=52.3
Q ss_pred ecCCcChHHHHHHHHHHhhCCCe--EEEEEEeeecCCCCCCchhhhhHHHHHHHhhcCCCeEEEE--Eee---cChhhHH
Q 035624 638 FLGGNDDREALTLAKRMGRDNKV--RLTVVHFIAASDDGDVDWETILDSEVLRDIKKTECMRYEK--HVV---ENGADTV 710 (775)
Q Consensus 638 f~gg~ddreAl~~a~rma~~~~~--~ltvl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~y~e--~~V---~~g~~i~ 710 (775)
+.=.|.|.+|++.|.|+.+. +. +++++.+=++. .+ +..++.+.- .. +++...+ ... -+...+.
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------a~-~~lr~ala~-Ga-D~vi~v~~d~~~~~~~~~~~~A 105 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------CQ-ETIRTALAM-GA-DRGIHVEVPPAEAERLGPLQVA 105 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------HH-HHHHHHHHH-TC-SEEEEEECCHHHHTTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------HH-HHHHHHHhc-CC-CEEEEEecChhhcccCCHHHHH
Confidence 33378999999999999987 66 89988875321 11 111122211 11 3444333 111 1122233
Q ss_pred HHHHhcc--cCCcEEEEcccCC-----CCCccccccccC
Q 035624 711 EIVHSMV--NQYDLIIVGRRHN-----LECPQTSCLDQW 742 (775)
Q Consensus 711 ~~i~~~~--~~~DLiivG~~~~-----~~~~~~~gl~~w 742 (775)
+.+.+.. .+||+|+.|++.. .-.|++..+-+|
T Consensus 106 ~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 106 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 3332221 4699999999872 224556666666
No 60
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=32.04 E-value=1.2e+02 Score=30.11 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=26.9
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeec
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAA 670 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~ 670 (775)
.++++.|.||+|+--.+.++.+.. + .+.++++.+.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~--~--~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS--T--TCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC--C--CCeEEEecCC
Confidence 378899999999988888888875 2 4567777654
No 61
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=30.36 E-value=4.8e+02 Score=27.07 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCccccchhhHHHHHHHhccCC--CceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeE
Q 035624 584 GSLESDDQSVRNLNLRILEKAP--CSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVR 661 (775)
Q Consensus 584 ~~~~~~~~~~~~~~~kVl~~Ap--c~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ 661 (775)
|.++.+-+...++.+.|-+..+ .||++=..-. ++ ..+|.+..++.++++++.+.
T Consensus 187 GslenR~rf~~eiv~aVr~avg~d~pv~vRls~~-~~-------------------~~~g~~~~~~~~~a~~l~~~---- 242 (343)
T 3kru_A 187 NSIENRARFLIEVIDEVRKNWPENKPIFVRVSAD-DY-------------------MEGGINIDMMVEYINMIKDK---- 242 (343)
T ss_dssp SSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECC-CS-------------------STTSCCHHHHHHHHHHHTTT----
T ss_pred cchHhHHHHHHHHHHHHHhcCCccCCeEEEeech-hh-------------------hccCccHHHHHHHHHHhhcc----
Confidence 4455555567888888888774 5666521111 11 12466778999999999887
Q ss_pred EEEEEeeecCCCCCC-chhhhhHHHHHHHhhcC-CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccC
Q 035624 662 LTVVHFIAASDDGDV-DWETILDSEVLRDIKKT-ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRH 729 (775)
Q Consensus 662 ltvl~~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~ 729 (775)
+..+++......... ......+-++.++++.. +.-...--.+.+.++..+.+++ ..+|+|.+||.-
T Consensus 243 vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~--G~aD~V~iGR~~ 310 (343)
T 3kru_A 243 VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSN--ERADLVALGREL 310 (343)
T ss_dssp CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHT--TSCSEEEESHHH
T ss_pred ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhc--hhhHHHHHHHHH
Confidence 334444221110000 00111234466666654 3322222233455666777776 779999999984
No 62
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.96 E-value=1.6e+02 Score=29.09 Aligned_cols=161 Identities=8% Similarity=0.036 Sum_probs=72.5
Q ss_pred chHHHHHHHHccccCCcceEEEEEEEEcCCCCc--HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHh
Q 035624 524 SENVIVSFKKFGGLRWGAVSINTFTAISPLDLM--HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRIL 601 (775)
Q Consensus 524 ~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m--~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl 601 (775)
..++.+.+++..++. +..+..+. + ..+. .....+...++++|-||+-.... + .. .-+-+
T Consensus 23 ~~~~~~gi~~~a~~~--g~~~~~~~--~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~------~~-----~~~~~ 83 (291)
T 3egc_A 23 FAEVASGVESEARHK--GYSVLLAN--T-AEDIVREREAVGQFFERRVDGLILAPSEG---E------HD-----YLRTE 83 (291)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEE--C-TTCHHHHHHHHHHHHHTTCSEEEECCCSS---C------CH-----HHHHS
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEe--C-CCCHHHHHHHHHHHHHCCCCEEEEeCCCC---C------hH-----HHHHh
Confidence 345666666665542 34443321 1 1222 23466667788999887753221 0 00 12346
Q ss_pred ccCCCceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHH-HHHhhCCCeEEEEEEeeecCCCCCCchhh
Q 035624 602 EKAPCSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLA-KRMGRDNKVRLTVVHFIAASDDGDVDWET 680 (775)
Q Consensus 602 ~~Apc~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a-~rma~~~~~~ltvl~~~~~~~~~~~~~~~ 680 (775)
+.+..|| |++|+.... ..... . +.|++++...+ ..|.++-.-++-++. .+.. ....+
T Consensus 84 ~~~~iPv-V~~~~~~~~----------~~~~~-----V-~~D~~~~g~~a~~~L~~~G~~~i~~i~--~~~~---~~~~~ 141 (291)
T 3egc_A 84 LPKTFPI-VAVNRELRI----------PGCGA-----V-LSENVRGARTAVEYLIARGHTRIGAIV--GSAG---LMTSR 141 (291)
T ss_dssp SCTTSCE-EEESSCCCC----------TTCEE-----E-EECHHHHHHHHHHHHHHTTCCSEEEEC--SCTT---SHHHH
T ss_pred hccCCCE-EEEecccCC----------CCCCE-----E-EECcHHHHHHHHHHHHHcCCCEEEEEe--CCCC---CcCHH
Confidence 6778997 456665210 00112 1 35666665543 445555434443332 2211 12344
Q ss_pred hhHHHHHHHhhcC------CCeEEEEEeecChhhHHHHHHhcccCCcEEEE
Q 035624 681 ILDSEVLRDIKKT------ECMRYEKHVVENGADTVEIVHSMVNQYDLIIV 725 (775)
Q Consensus 681 ~~d~~~~~~~~~~------~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiiv 725 (775)
++.+.|.+.++.. ..+.+.+...+++.+...-+-+...+.|-|+.
T Consensus 142 ~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 192 (291)
T 3egc_A 142 ERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT 192 (291)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE
Confidence 5556666666543 12334444455554443333322345666554
No 63
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=28.74 E-value=42 Score=23.64 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=21.4
Q ss_pred cceEEEEEEEEcCCCCcHHHHHHHHhhcCCc
Q 035624 540 GAVSINTFTAISPLDLMHDDICTLALDKLAS 570 (775)
Q Consensus 540 ~~v~v~~~~~vs~~~~m~~~I~~~a~e~~ad 570 (775)
..|+.|- -|.| +|-++|..+|+|++.|
T Consensus 10 kkvslhl--lvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 10 KKVSLHL--LVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CCEEEEE--EECH--HHHHHHHHHHHHHSTT
T ss_pred ceeEEEE--eeCC--chhHHHHHHHHHccch
Confidence 4577776 4544 9999999999999876
No 64
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=27.22 E-value=58 Score=32.69 Aligned_cols=41 Identities=2% Similarity=-0.087 Sum_probs=32.8
Q ss_pred ceEEEEecCCcChHHHHHHHHHHhhCCCeEEEEEEeeecCCC
Q 035624 632 SKVALLFLGGNDDREALTLAKRMGRDNKVRLTVVHFIAASDD 673 (775)
Q Consensus 632 ~~i~~~f~gg~ddreAl~~a~rma~~~~~~ltvl~~~~~~~~ 673 (775)
.++++.|.||+|+--.+.++.+.... +..+.++++.+...+
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~ 82 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF 82 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC
Confidence 37899999999999999999888765 567788888765443
No 65
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=26.98 E-value=1.2e+02 Score=25.46 Aligned_cols=59 Identities=7% Similarity=-0.040 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCC
Q 035624 554 DLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHG 615 (775)
Q Consensus 554 ~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~ 615 (775)
+...+.+.+++++++++.||+|.-.+. ||.-.......+.+.+++-++ +.||-..=+|.
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERl 95 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCC
Confidence 445678999999999999999976543 333322233467777777666 89985443333
No 66
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=25.76 E-value=3.2e+02 Score=28.44 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCccccchhhHHHHHHHhccCC--CceEEEEcCCCCcccccccCCCCCccceEEEEecCCcChHHHHHHHHHHhhCCCeE
Q 035624 584 GSLESDDQSVRNLNLRILEKAP--CSVGILIDHGNLKRSVTHMDSSADSFSKVALLFLGGNDDREALTLAKRMGRDNKVR 661 (775)
Q Consensus 584 ~~~~~~~~~~~~~~~kVl~~Ap--c~Vgilvdr~~~~~~~~~~~~~~~~~~~i~~~f~gg~ddreAl~~a~rma~~~~~~ 661 (775)
|.++.+-+...++.+.|-+..+ .||++=..-. + . ..||-+..|+.++++++.+.-
T Consensus 196 GslenR~r~~~eiv~aVR~avG~d~pV~vRls~~-------------~-~------~~~g~~~~~~~~la~~L~~~G--- 252 (349)
T 3hgj_A 196 GSLENRMRFPLQVAQAVREVVPRELPLFVRVSAT-------------D-W------GEGGWSLEDTLAFARRLKELG--- 252 (349)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESC-------------C-C------STTSCCHHHHHHHHHHHHHTT---
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccc-------------c-c------cCCCCCHHHHHHHHHHHHHcC---
Confidence 3344444456677777777763 4565421111 1 1 125777788999999998763
Q ss_pred EEEEEeeecCCCCCC--chhhhhHHHHHHHhhcC-CCeEEEEEeecChhhHHHHHHhcccCCcEEEEcccC
Q 035624 662 LTVVHFIAASDDGDV--DWETILDSEVLRDIKKT-ECMRYEKHVVENGADTVEIVHSMVNQYDLIIVGRRH 729 (775)
Q Consensus 662 ltvl~~~~~~~~~~~--~~~~~~d~~~~~~~~~~-~~v~y~e~~V~~g~~i~~~i~~~~~~~DLiivG~~~ 729 (775)
+..+++......... ......+.+++++++.. +.....--.+.+.++..+.+++ ..+|++.+||.-
T Consensus 253 vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~--G~aD~V~iGR~~ 321 (349)
T 3hgj_A 253 VDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQA--GSADLVLLGRVL 321 (349)
T ss_dssp CCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHT--TSCSEEEESTHH
T ss_pred CCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHC--CCceEEEecHHH
Confidence 334444321111000 00111234566666653 3222222233455566677776 679999999984
No 67
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.29 E-value=2.4e+02 Score=27.64 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=38.0
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCc---HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLM---HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLR 599 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m---~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~k 599 (775)
+..++.+.+++..++. +..+... ..++- ...+.+...++++|-||+-.... ++. .-+
T Consensus 27 ~~~~~~~gi~~~a~~~--g~~~~~~----~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~---------~~~-----~~~ 86 (292)
T 3k4h_A 27 FFPEVIRGISSFAHVE--GYALYMS----TGETEEEIFNGVVKMVQGRQIGGIILLYSRE---------NDR-----IIQ 86 (292)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEC----CCCSHHHHHHHHHHHHHTTCCCEEEESCCBT---------TCH-----HHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEE----eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC---------ChH-----HHH
Confidence 4455677777666543 2333321 11222 23456667788999888742111 011 124
Q ss_pred HhccCCCceEEEEcCC
Q 035624 600 ILEKAPCSVGILIDHG 615 (775)
Q Consensus 600 Vl~~Apc~Vgilvdr~ 615 (775)
-++++..|| |++|+.
T Consensus 87 ~l~~~~iPv-V~~~~~ 101 (292)
T 3k4h_A 87 YLHEQNFPF-VLIGKP 101 (292)
T ss_dssp HHHHTTCCE-EEESCC
T ss_pred HHHHCCCCE-EEECCC
Confidence 466778997 456665
No 68
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.36 E-value=1.6e+02 Score=29.16 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=27.1
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCcHHHHHHHHhhcCCcEEEEc
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLMHDDICTLALDKLASLVILS 575 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~a~e~~adlIImg 575 (775)
+..++.+.+++..++. +..+.....-. ... .....+...++++|-||+-
T Consensus 25 ~~~~~~~gi~~~a~~~--g~~~~~~~~~~-~~~-~~~~~~~l~~~~vdgiIi~ 73 (289)
T 3k9c_A 25 FHGDLVEQIYAAATRR--GYDVMLSAVAP-SRA-EKVAVQALMRERCEAAILL 73 (289)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEEEEBT-TBC-HHHHHHHHTTTTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEEeCCC-CHH-HHHHHHHHHhCCCCEEEEE
Confidence 3455677777666543 23333322221 122 5566666677888887765
No 69
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.83 E-value=1.7e+02 Score=26.70 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHhccCCCceEEEEcCC
Q 035624 553 LDLMHDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRILEKAPCSVGILIDHG 615 (775)
Q Consensus 553 ~~~m~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl~~Apc~Vgilvdr~ 615 (775)
....++.+.+++++.+++.|++|.-. ..+|.-.....-.+.+.+++.++.++||..+=+|.
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~--~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPK--NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCC--CBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeee--cCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 46689999999999999999999653 23343211112246677777777789986654555
No 70
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.72 E-value=1.2e+02 Score=29.66 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=38.4
Q ss_pred cchHHHHHHHHccccCCcceEEEEEEEEcCCCCc--HHHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHH
Q 035624 523 YSENVIVSFKKFGGLRWGAVSINTFTAISPLDLM--HDDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRI 600 (775)
Q Consensus 523 ~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m--~~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kV 600 (775)
+..++.+.+++..++. +..+... -+ ..+. .....+...++++|-||+-...... +. .-+-
T Consensus 16 ~~~~~~~gi~~~a~~~--g~~~~~~--~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~------------~~~~ 77 (272)
T 3o74_A 16 SYARIAKQLEQGARAR--GYQLLIA--SS-DDQPDSERQLQQLFRARRCDALFVASCLPPE-DD------------SYRE 77 (272)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEE--EC-TTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-CC------------HHHH
T ss_pred hHHHHHHHHHHHHHHC--CCEEEEE--eC-CCCHHHHHHHHHHHHHcCCCEEEEecCcccc-HH------------HHHH
Confidence 3455667777766543 3343322 11 2222 2345666677899988875322111 11 1233
Q ss_pred hccCCCceEEEEcCC
Q 035624 601 LEKAPCSVGILIDHG 615 (775)
Q Consensus 601 l~~Apc~Vgilvdr~ 615 (775)
++.+..|| |++|+.
T Consensus 78 ~~~~~iPv-V~~~~~ 91 (272)
T 3o74_A 78 LQDKGLPV-IAIDRR 91 (272)
T ss_dssp HHHTTCCE-EEESSC
T ss_pred HHHcCCCE-EEEccC
Confidence 56678887 556765
No 71
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.70 E-value=1.8e+02 Score=28.94 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=35.6
Q ss_pred chHHHHHHHHccccCCcceEEEEEEEEcCCCCcH--HHHHHHHhhcCCcEEEEccccccccCCCccccchhhHHHHHHHh
Q 035624 524 SENVIVSFKKFGGLRWGAVSINTFTAISPLDLMH--DDICTLALDKLASLVILSFHRTWYIDGSLESDDQSVRNLNLRIL 601 (775)
Q Consensus 524 ~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~m~--~~I~~~a~e~~adlIImg~h~~~~~d~~~~~~~~~~~~~~~kVl 601 (775)
..++.+.+++..++. +..+... .....+.. ....+.+.++++|-||+-...... ..... +-+
T Consensus 19 ~~~~~~gi~~~a~~~--g~~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-----------~~~~~-~~~ 82 (305)
T 3g1w_A 19 WKRCLKGFEDAAQAL--NVTVEYR--GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE-----------LTDTI-NKA 82 (305)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEE--ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT-----------THHHH-HHH
T ss_pred HHHHHHHHHHHHHHc--CCEEEEe--CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH-----------HHHHH-HHH
Confidence 345666666655442 3333321 11122322 244555667889987764211100 11122 224
Q ss_pred ccCCCceEEEEcCC
Q 035624 602 EKAPCSVGILIDHG 615 (775)
Q Consensus 602 ~~Apc~Vgilvdr~ 615 (775)
+++..|| |++|+.
T Consensus 83 ~~~~iPv-V~~~~~ 95 (305)
T 3g1w_A 83 VDAGIPI-VLFDSG 95 (305)
T ss_dssp HHTTCCE-EEESSC
T ss_pred HHCCCcE-EEECCC
Confidence 5678887 556665
Done!