BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035625
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|F Chain F, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 506
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/512 (46%), Positives = 337/512 (65%), Gaps = 28/512 (5%)
Query: 451 ESSSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQD 510
+S + + +KG +AV SG++ + H+LE G V++ TL + D+ G NSYY LQ+++D
Sbjct: 2 KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLED 61
Query: 511 DKGSDCYVFRKWGRVGNDKIGGSKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQ 569
DK + ++FR WGRVG IG +KLE+ SKEDA+ F +L+ EKTGN W + +NF
Sbjct: 62 DKENRYWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFT 116
Query: 570 KKPGKILPTGYCTSYSLSDYGVNKQVSEKIGTD--ADSQLAPALVELMKMLFNVETYRAA 627
K P K P DYG +++ +K+ + S+L + +L+KM+F+VE+ + A
Sbjct: 117 KYPKKFYPLEI-------DYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKA 169
Query: 628 MMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVI 687
M+E++I++ +MPLGKLSK IQ + L+E+Q ++ G+ D S I+D SNRF+T+I
Sbjct: 170 MVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSD-----SQILDLSNRFYTLI 224
Query: 688 PS----IHPHVIRDEDDFKSKVKMLEALQDIEIASRLV--GFDVDSDDSLDEKYKKLCCD 741
P P ++ + D ++K +ML+ L DIE+A L+ G D S D +D Y+KL D
Sbjct: 225 PHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTD 284
Query: 742 IAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRML 801
I + DSE+ ++I KY+ THA TH + LE+ ++F +EREGE ++ + ++L NR L
Sbjct: 285 IKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPF-KQLHNRRL 343
Query: 802 LWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLM 861
LWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIYFAD+VSKSA YC T + +P+GL+
Sbjct: 344 LWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLI 403
Query: 862 LLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSN 921
LL EV LG +YELK A ++ K P GKHS KGLGKT P S + D V VP G + S
Sbjct: 404 LLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSG 462
Query: 922 VRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
V + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct: 463 VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK0|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK1|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1UK1|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1WOK|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|C Chain C, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|D Chain D, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|2RCW|A Chain A, Parp Complexed With A620223
Length = 350
Score = 350 bits (899), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 246/355 (69%), Gaps = 13/355 (3%)
Query: 605 SQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNN 664
S+L + +L+KM+F+VE+ + AM+E++I++ +MPLGKLSK IQ + L+E+Q ++
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 665 GAYDPSVKESLIIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIASRL 720
G+ D S I+D SNRF+T+IP P ++ + D ++KV+ML+ L DIE+A L
Sbjct: 62 GSSD-----SQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSL 116
Query: 721 V--GFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVF 778
+ G D S D +D Y+KL DI + DSE+ ++I KY+ THA TH + LE+ ++F
Sbjct: 117 LRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIF 176
Query: 779 SLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIY 838
+EREGE ++ + ++L NR LLWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIY
Sbjct: 177 KIEREGECQRYKPF-KQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIY 235
Query: 839 FADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVP 898
FAD+VSKSA YC T + +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P
Sbjct: 236 FADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTP 295
Query: 899 QESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
S + D V VP G + S V + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct: 296 DPSANISL-DGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
>pdb|2RD6|A Chain A, Parp Complexed With A861695
pdb|3GJW|A Chain A, Parp Complexed With A968427
pdb|3GN7|A Chain A, Parp Complexed With A861696
pdb|3L3M|A Chain A, Parp Complexed With A927929
pdb|3L3L|A Chain A, Parp Complexed With A906894
Length = 350
Score = 348 bits (894), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 245/355 (69%), Gaps = 13/355 (3%)
Query: 605 SQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNN 664
S+L + +L+KM+F+VE+ + AM+E++I++ +MPLGKLSK IQ + L+E+Q ++
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 665 GAYDPSVKESLIIDASNRFFTVIPS----IHPHVIRDEDDFKSKVKMLEALQDIEIASRL 720
G+ D S I+D SNRF+T+IP P ++ + D ++K +ML+ L DIE+A L
Sbjct: 62 GSSD-----SQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSL 116
Query: 721 V--GFDVDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVF 778
+ G D S D +D Y+KL DI + DSE+ ++I KY+ THA TH + LE+ ++F
Sbjct: 117 LRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIF 176
Query: 779 SLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIY 838
+EREGE ++ + ++L NR LLWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIY
Sbjct: 177 KIEREGECQRYKPF-KQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIY 235
Query: 839 FADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVP 898
FAD+VSKSA YC T + +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P
Sbjct: 236 FADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTP 295
Query: 899 QESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
S + D V VP G + S V + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct: 296 DPSANISL-DGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With Carba-Nad
pdb|1PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAW|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
pdb|2PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 4-Amino-1,8-Naphthalimide
pdb|3PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3-Methoxybenzamide
pdb|4PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With
8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
Length = 361
Score = 338 bits (867), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/361 (48%), Positives = 249/361 (68%), Gaps = 13/361 (3%)
Query: 599 IGTDADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEI 658
+ S+LA + +L+KM+F+VE+ + AM+EF+I++ +MPLGKLSK IQ + L E+
Sbjct: 4 VSAGTKSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEV 63
Query: 659 QNLLNNGAYDPSVKESLIIDASNRFFTVIPS----IHPHVIRDEDDFKSKVKMLEALQDI 714
Q +++G ES I+D SNRF+T+IP P ++ + + ++KV+ML+ L DI
Sbjct: 64 QQAVSDGG-----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDI 118
Query: 715 EIA-SRLVGFDVDSD-DSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSL 772
E+A S L G + D D D +D Y+KL DI + DSE+ ++I++Y+ THA TH + L
Sbjct: 119 EVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDL 178
Query: 773 ELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYM 832
++ E+F +EREGE ++ + ++L NR LLWHGSR TNF GILSQGLRIAPPEAP TGYM
Sbjct: 179 KVVEIFRIEREGESQRYKPF-KQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYM 237
Query: 833 FGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKG 892
FGKGIYFAD+VSKSA YC T + +P+GL+LL EV LG +YELK A ++ K P GKHS KG
Sbjct: 238 FGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKG 297
Query: 893 LGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHH 952
LGKT P + D V VP G + + + + L+YNEYIVY+ AQV +++LLK++F++
Sbjct: 298 LGKTAPDPTATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNY 356
Query: 953 K 953
K
Sbjct: 357 K 357
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 338 bits (867), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 248/355 (69%), Gaps = 13/355 (3%)
Query: 605 SQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNN 664
S+LA + +L+KM+F+VE+ + AM+EF+I++ +MPLGKLSK IQ + L E+Q +++
Sbjct: 2 SKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSD 61
Query: 665 GAYDPSVKESLIIDASNRFFTVIPS----IHPHVIRDEDDFKSKVKMLEALQDIEIA-SR 719
G ES I+D SNRF+T+IP P ++ + + ++KV+ML+ L DIE+A S
Sbjct: 62 GG-----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSL 116
Query: 720 LVGFDVDSD-DSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVF 778
L G + D D D +D Y+KL DI + DSE+ ++I++Y+ THA TH + L++ E+F
Sbjct: 117 LRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIF 176
Query: 779 SLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIY 838
+EREGE ++ + ++L NR LLWHGSR TNF GILSQGLRIAPPEAP TGYMFGKGIY
Sbjct: 177 RIEREGESQRYKPF-KQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIY 235
Query: 839 FADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVP 898
FAD+VSKSA YC T + +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P
Sbjct: 236 FADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAP 295
Query: 899 QESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953
+ D V VP G + + + + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct: 296 DPTATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
pdb|1GS0|B Chain B, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
Length = 351
Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 233/358 (65%), Gaps = 20/358 (5%)
Query: 604 DSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLN 663
+SQL + EL+K++ NV+T M+E + PLGKL+ I+ G+++L +I++ +
Sbjct: 1 ESQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIR 60
Query: 664 NGAYDPSVKESLIIDASNRFFTVIP-----SIHPHVIRDEDDFKSKVKMLEALQDIEIAS 718
G + + +++A N F+T IP SI P VIR E + KVK+LEAL DIEIA
Sbjct: 61 AGQHGRA-----LVEACNEFYTRIPHDFGLSIPP-VIRTEKELSDKVKLLEALGDIEIAL 114
Query: 719 RLVGFDVDS-DDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEV 777
+LV + + LD+ Y+ L C + PL H+S ++++I +YL +THAPTH D+++ L +V
Sbjct: 115 KLVKSERQGLEHPLDQHYRNLHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDV 174
Query: 778 FSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGI 837
F +E+EGE + F + L NRMLLWHGSRL+N+VGILS GLR+APPEAP TGYMFGKGI
Sbjct: 175 FEVEKEGEKEAF---REDLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGI 231
Query: 838 YFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKP-PDGKHSTKGLGKT 896
YFAD+ SKSA YCF + GL+LLSEV LG+ EL +A + GKHSTKG+GK
Sbjct: 232 YFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKM 291
Query: 897 VPQESDFVKWRDDVTVPCGKPVPSNVRASE---LMYNEYIVYNTAQVKMQFLLKVRFH 951
P + F+ + TVP G + + E L YNE+IVY+ QV+M++LLK++F+
Sbjct: 292 APSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFN 348
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 288 bits (737), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 227/347 (65%), Gaps = 18/347 (5%)
Query: 613 ELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVK 672
EL+K++ NV+ MME N + PLGKL+ I+ G+++L +I++ + G + +
Sbjct: 29 ELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRA-- 86
Query: 673 ESLIIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDS- 727
+++A N F+T IP P +IR + + K+++LEAL DIEIA +LV ++ S
Sbjct: 87 ---LMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSP 143
Query: 728 DDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFD 787
+ LD+ Y+ L C + PL H+S ++++I +YL +THAPTH+D+++ L ++F +E++GE +
Sbjct: 144 EHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKE 203
Query: 788 KFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSA 847
F + L NRMLLWHGSR++N+VGILS GLRIA PEAP TGYMFGKGIYFAD+ SKSA
Sbjct: 204 AF---REDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSA 260
Query: 848 QYCFTDKKNPVGLMLLSEVGLGEVYELKKAK-YMDKPPDGKHSTKGLGKTVPQESDFVKW 906
YCF + GL+LLSEV LG+ EL +A + GKHSTKGLGK P + FV
Sbjct: 261 NYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL 320
Query: 907 RDDVTVPCGKPVPSNVRASE---LMYNEYIVYNTAQVKMQFLLKVRF 950
+ TVP G + + + L YNEYIVYN QV+M++LLKV+F
Sbjct: 321 -NGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQF 366
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Ku0058948
pdb|3C4H|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Dr2313
pdb|3CE0|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Pj34
pdb|3FHB|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzoic Acid
Length = 357
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 182/364 (50%), Gaps = 37/364 (10%)
Query: 607 LAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGA 666
L PA +L+ +F+ E ++ M D+++ +MPLGKLSK I +GFEAL ++ L
Sbjct: 10 LDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKG-- 67
Query: 667 YDPSVKESLIIDASNRFFTVIP----SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVG 722
P+ + + S+ F+TVIP P I + ++K ML L DIE+A L
Sbjct: 68 --PTDGGQSLEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQA 125
Query: 723 FD------VDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATHA----PTHTDWSL 772
+ LD Y+ L C + L + +Y++I+ YL T + PT
Sbjct: 126 VSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPT------ 179
Query: 773 ELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYM 832
L+ ++ + +EGE D+F ++ KL NR LLWHG+ + IL+ GLRI P +G
Sbjct: 180 -LQHIWKVNQEGEEDRFQAH-SKLGNRKLLWHGTNMAVVAAILTSGLRI----MPHSGGR 233
Query: 833 FGKGIYFADLVSKSAQYCFTDK--KNPVGLMLLSEVGLGEVYELKKAK-YMDKPPDGKHS 889
GKGIYFA SKSA Y K + VG M L EV LG + + + PP G S
Sbjct: 234 VGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDS 293
Query: 890 TKGLGKTVP---QESDFVKWRDDVTVPCGKPVP-SNVRASELMYNEYIVYNTAQVKMQFL 945
G T P Q+++ V VP G+PVP +S +EY++Y +Q ++++L
Sbjct: 294 VIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYL 353
Query: 946 LKVR 949
L+V
Sbjct: 354 LEVH 357
>pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 114
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 60/81 (74%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
KPW+ EYA I KE RLGK+VQS+ FDG MPMWNHASC+L+K QIKS
Sbjct: 9 KPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKTKQIKS 68
Query: 66 LDDVEGIESLRWEDQQKIRKY 86
+DDVEGIESLRWEDQQKIRKY
Sbjct: 69 VDDVEGIESLRWEDQQKIRKY 89
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose)
Polymerase-1
Length = 139
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 456 VTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSD 515
+ + +KG +AV SG++ + H+LE G V++ TL + D+ G NSYY LQ+++DDK +
Sbjct: 13 MKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENR 72
Query: 516 CYVFRKWGRVGNDKIGGSKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGK 574
++FR WGRVG IG +KLE+ SKEDA+ F +L+ EKTGN W + +NF K P K
Sbjct: 73 YWIFRSWGRVGT-VIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHS----KNFTKYPKK 127
Query: 575 ILP 577
P
Sbjct: 128 FYP 130
>pdb|4AV1|A Chain A, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|B Chain B, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|C Chain C, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|D Chain D, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
Length = 223
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
K ++VEYA +I K++LR+ MVQS FDG +P W H SC + + I+
Sbjct: 28 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRH 87
Query: 66 LD-DVEGIESLRWEDQQKIRKYXXXXXXXXX-----XXKSNVTAAEYGIEVSQTSRATCR 119
D +V+G LRW+DQQK++K K+ T ++ E ++++R+TC+
Sbjct: 88 PDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQDGIGSKAEKTLGDFAAEYAKSNRSTCK 147
Query: 120 HCSKKIMKGEVRISAKPDGQGTKGLA----WHHANCF------LDLSPSTQVEKLSGWGN 169
C +KI KG+VR+S K L W+H CF L P +L G+
Sbjct: 148 GCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSL 207
Query: 170 LTVSDQGAVK 179
L D+ A+K
Sbjct: 208 LATEDKEALK 217
>pdb|2RIQ|A Chain A, Crystal Structure Of The Third Zinc-Binding Domain Of
Human Parp-1
pdb|4DQY|B Chain B, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|E Chain E, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 160
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 215 LESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALG 274
LE L+AQ +W +KD+LKK +T +L+E+L N Q E + D ADGM+FGAL
Sbjct: 20 LEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALL 79
Query: 275 RCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQ 334
C CSG L + Y C G +AW+KC T+ P R +W P+E + + K
Sbjct: 80 PCEECSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNR--KEWVTPKEFRE---ISYLKKL 134
Query: 335 RTKKPIRVLPPRT 347
+ KK R+ PP T
Sbjct: 135 KVKKQDRIFPPET 147
>pdb|2JVN|A Chain A, Domain C Of Human Parp-1
Length = 126
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 215 LESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALG 274
LE L+AQ +W +KD+LKK +T +L+E+L N Q E + D ADGM+FGAL
Sbjct: 2 LEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALL 61
Query: 275 RCPICSGPLRYSGGIYRCRGYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQ 334
C CSG L + Y C G +AW+KC T+ P R +W P+E + + K
Sbjct: 62 PCEECSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNR--KEWVTPKEFRE---ISYLKKL 116
Query: 335 RTKKPIRVLP 344
+ KK R+ P
Sbjct: 117 KVKKQDRIFP 126
>pdb|2DMJ|A Chain A, Solution Structure Of The First Zf-Parp Domain Of Human
Poly(Adp-Ribose)polymerase-1
Length = 106
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
K ++VEYA +I K++LR+ MVQS FDG +P W H SC + + I+
Sbjct: 14 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRH 73
Query: 66 LD-DVEGIESLRWEDQQKIRK 85
D +V+G LRW+DQQK++K
Sbjct: 74 PDVEVDGFSELRWDDQQKVKK 94
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 106 YGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA--WHHANCFLDLSPSTQVE- 162
Y +E +++ RA+C+ CS+ I K +R++ G W+H +CF + S +
Sbjct: 16 YRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPD 75
Query: 163 -KLSGWGNLTVSDQGAVK 179
++ G+ L DQ VK
Sbjct: 76 VEVDGFSELRWDDQQKVK 93
>pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|4DQY|A Chain A, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|D Chain D, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 116
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
K ++VEYA +I K++LR+ MVQS FDG +P W H SC + + I+
Sbjct: 27 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRH 86
Query: 66 LD-DVEGIESLRWEDQQKIRK 85
D +V+G LRW+DQQK++K
Sbjct: 87 PDVEVDGFSELRWDDQQKVKK 107
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 106 YGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA--WHHANCFLDLSPSTQVE- 162
Y +E +++ RA+C+ CS+ I K +R++ G W+H +CF + S +
Sbjct: 29 YRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPD 88
Query: 163 -KLSGWGNLTVSDQGAVKALVNVPSTT 188
++ G+ L DQ VK T
Sbjct: 89 VEVDGFSELRWDDQQKVKKTAEAGGVT 115
>pdb|2L30|A Chain A, Human Parp-1 Zinc Finger 1
Length = 108
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
K ++VEYA +I K++LR+ MVQS FDG +P W H SC + + I+
Sbjct: 7 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRH 66
Query: 66 LD-DVEGIESLRWEDQQKIRK 85
D +V+G LRW+DQQK++K
Sbjct: 67 PDVEVDGFSELRWDDQQKVKK 87
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 106 YGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA--WHHANCFLDLSPSTQ--- 160
Y +E +++ RA+C+ CS+ I K +R++ G W+H +CF + S +
Sbjct: 9 YRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPD 68
Query: 161 VEKLSGWGNLTVSDQGAVKALVNVPSTTKNG 191
VE + G+ L DQ VK T G
Sbjct: 69 VE-VDGFSELRWDDQQKVKKTAEAGGVTGKG 98
>pdb|3OD8|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
Length = 116
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 6 KPWKVEYAXXXXXXXXXXXXNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKS 65
K ++VEYA +I K++LR VQS FDG +P W H SC + + I+
Sbjct: 27 KLYRVEYAKSGRASCKKCSESIPKDSLRXAIXVQSPXFDGKVPHWYHFSCFWKVGHSIRH 86
Query: 66 LD-DVEGIESLRWEDQQKIRK 85
D +V+G LRW+DQQK++K
Sbjct: 87 PDVEVDGFSELRWDDQQKVKK 107
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 106 YGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA--WHHANCFLDLSPSTQVE- 162
Y +E +++ RA+C+ CS+ I K +R + G W+H +CF + S +
Sbjct: 29 YRVEYAKSGRASCKKCSESIPKDSLRXAIXVQSPXFDGKVPHWYHFSCFWKVGHSIRHPD 88
Query: 163 -KLSGWGNLTVSDQGAVKALVNVPSTT 188
++ G+ L DQ VK T
Sbjct: 89 VEVDGFSELRWDDQQKVKKTAEAGGVT 115
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp-
Ribose] Polymerase-3
Length = 124
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 486 YNTTLNMSDLSTGVNSYYILQIIQD-DKGSDCYVFRKWGRVGNDKIGGSKLEECSK-EDA 543
YN TLN +++ N +YI+Q++QD ++ C+ +WGRVG ++G SK+ ++ EDA
Sbjct: 33 YNCTLNQTNIENNNNKFYIIQLLQDSNRFFTCW--NRWGRVG--EVGQSKINHFTRLEDA 88
Query: 544 VCEFKRLFLEKTGNPWEAWEQKQNFQKKPGK 574
+F++ F EKT N W ++ +F PGK
Sbjct: 89 KKDFEKKFREKTKN---NWAERDHFVSHPGK 116
>pdb|3ODC|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODC|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODE|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODE|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
Length = 111
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 98 KSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA----WHHANCF- 152
K+ T ++ E ++++R+TC+ C +KI KG+VR+S K L W+H CF
Sbjct: 2 KAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61
Query: 153 -----LDLSPSTQVEKLSGWGNLTVSDQGAVK 179
L P +L G+ L D+ A+K
Sbjct: 62 KNREELGFRPEYSASQLKGFSLLATEDKEALK 93
>pdb|2L31|A Chain A, Human Parp-1 Zinc Finger 2
Length = 112
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 98 KSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA----WHHANCF- 152
K+ T ++ E ++++R+TC+ C +KI KG+VR+S K L W+H CF
Sbjct: 3 KAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 62
Query: 153 -----LDLSPSTQVEKLSGWGNLTVSDQGAVK 179
L P +L G+ L D+ A+K
Sbjct: 63 KNREELGFRPEYSASQLKGFSLLATEDKEALK 94
>pdb|2CS2|A Chain A, Solution Structure Of The Second Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 134
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 98 KSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLA----WHHANCF- 152
K+ T ++ E ++++R+TC+ C +KI KG+VR+S K L W+H CF
Sbjct: 10 KAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69
Query: 153 -----LDLSPSTQVEKLSGWGNLTVSDQGAVK 179
L P +L G+ L D+ A+K
Sbjct: 70 KNREELGFRPEYSASQLKGFSLLATEDKEALK 101
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 46/162 (28%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQY-------- 849
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY
Sbjct: 75 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 129
Query: 850 -CFTDKKNPVGL----MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFV 904
C T K + ML V LG+ + M P G HS
Sbjct: 130 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSV-------------- 175
Query: 905 KWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLL 946
G+P + L Y EY++Y Q ++L+
Sbjct: 176 ---------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 203
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 46/162 (28%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQY-------- 849
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY
Sbjct: 111 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 165
Query: 850 -CFTDKKNPVGL----MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFV 904
C T K + ML V LG+ + M P G HS
Sbjct: 166 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSV-------------- 211
Query: 905 KWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLL 946
G+P + L Y EY++Y Q ++L+
Sbjct: 212 ---------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 239
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQY-------- 849
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY
Sbjct: 75 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 129
Query: 850 -CFTDKKNPVGL----MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKG 892
C K + +L V LG+ + A M P G HS G
Sbjct: 130 GCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTG 177
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 46/162 (28%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQY-------- 849
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY
Sbjct: 75 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 129
Query: 850 -CFTDKKNPVGL----MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFV 904
C T K + ML V LG+ + M P G HS
Sbjct: 130 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSV-------------- 175
Query: 905 KWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLL 946
G+P + L Y EY++Y Q ++L+
Sbjct: 176 ---------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 203
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQY-------- 849
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY
Sbjct: 103 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 157
Query: 850 -CFTDKKNPVGL----MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKG 892
C K + +L V LG+ + A M P G HS G
Sbjct: 158 GCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTG 205
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 798 NRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCF 851
N +L+HGS N I+ +G G MFG GIYFA+ SKS QY +
Sbjct: 103 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVY 151
>pdb|3PD7|A Chain A, Crystal Structure Of The Sixth Brct Domain Of Human Topbp1
pdb|3PD7|B Chain B, Crystal Structure Of The Sixth Brct Domain Of Human Topbp1
Length = 107
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 400 LVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLY 444
+ G P+D + E + ++ V IV E +L+DC + K LP LY
Sbjct: 56 FIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLY 100
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 477 HILEDGKSVYNTTLNMSDLSTG---VNSYYILQIIQDDKGSDCYVFRK-------WGRVG 526
H+L G +V +T ++D G V Y +LQI + S Y + WG VG
Sbjct: 31 HVLCVGAAVLDTLFRVADXPKGEGKVLPYEVLQIAEGXASSAAYAVHRXGGRASLWGAVG 90
Query: 527 NDKIGGSKLEECSK 540
+D+ G L + S+
Sbjct: 91 DDETGTRILRDLSE 104
>pdb|3JVE|A Chain A, Crystal Structure Of The Sixth Brct Domain Of Topbp1
Length = 109
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 400 LVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLY 444
+ G P+D + E + ++ V IV E +L+DC + K LP LY
Sbjct: 58 FIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLY 102
>pdb|2X5Y|A Chain A, Human Zc3hav1 (Artd13), C-Terminal Domain
Length = 173
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 749 SEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNR-MLLWHGSR 807
SE + L +Y+ + + + ++E++ +E DKF+ + ++K LL++ +
Sbjct: 8 SEIHHLHPEYVRVSEHFKASMKNFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATS 67
Query: 808 LTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVG 867
I S E Y GKGIYFA S + C D KN V M +++V
Sbjct: 68 RAYVESICSNNFDSFLHETHENKY--GKGIYFAKDAIYSHKNCPYDAKNVV--MFVAQVL 123
Query: 868 LGEVYELKKAKYMDKPP 884
+G+ E Y PP
Sbjct: 124 VGKFIE-GNITYTSPPP 139
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 751 DYQLIEKYLHATHAPTHT-DWSLELEEVFSLEREGEFDKFSS--YQRKLKNRMLL-WHGS 806
+++ I+K A H P D+ E+E FD ++ Y+ K + ++ +HGS
Sbjct: 102 EFEKIQKLTGAPHTPVPAPDFLFEIEY---------FDPANAKFYETKGERDLIYAFHGS 152
Query: 807 RLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLM--LLS 864
RL NF I+ GL + +FG+G Y +S + Y L+ +LS
Sbjct: 153 RLENFHSIIHNGLHCHLNKTS----LFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILS 208
Query: 865 EVGLGEVYELKKAKYMDKPPDGK 887
V + EV + K K D K
Sbjct: 209 CVAVCEVIDHPDVKCQTKKKDSK 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,997,893
Number of Sequences: 62578
Number of extensions: 1167466
Number of successful extensions: 2953
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2860
Number of HSP's gapped (non-prelim): 49
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)