Query 035625
Match_columns 954
No_of_seqs 446 out of 1176
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 7E-125 2E-129 1091.9 42.3 482 453-953 4-494 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 3.4E-92 1.2E-96 787.6 27.3 341 603-952 19-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 1.3E-89 4.3E-94 768.8 31.0 344 604-954 1-350 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 2.1E-82 7.1E-87 712.8 24.4 336 602-949 5-357 (357)
5 4av1_A Poly [ADP-ribose] polym 100.0 2.6E-47 9E-52 398.1 5.4 182 3-184 25-222 (223)
6 2riq_A Poly [ADP-ribose] polym 100.0 2E-39 6.8E-44 319.8 10.4 127 214-345 19-145 (160)
7 3u9h_A Tankyrase-2; protein-li 100.0 4.2E-38 1.4E-42 335.0 13.6 180 738-950 29-235 (240)
8 2x5y_A Zinc finger CCCH-type a 100.0 3.2E-38 1.1E-42 321.3 10.5 167 737-949 2-171 (173)
9 2pqf_A Poly [ADP-ribose] polym 100.0 7.5E-37 2.6E-41 317.7 14.0 177 737-950 9-193 (198)
10 3blj_A Poly(ADP-ribose) polyme 100.0 1.5E-35 5.2E-40 312.7 13.0 170 737-949 34-220 (221)
11 3hkv_A PARP-10, poly [ADP-ribo 100.0 1.6E-35 5.4E-40 310.2 12.6 174 739-951 10-200 (217)
12 3smj_A Poly [ADP-ribose] polym 100.0 4.1E-35 1.4E-39 303.1 13.2 169 739-949 8-192 (193)
13 2eoc_A Poly [ADP-ribose] polym 100.0 1E-30 3.5E-35 251.0 12.7 116 454-579 3-121 (124)
14 1v9x_A Poly (ADP-ribose) polym 99.9 2.2E-27 7.4E-32 223.1 8.5 91 4-94 7-97 (114)
15 3od8_A Poly [ADP-ribose] polym 99.9 1.5E-27 5E-32 223.8 6.2 93 1-93 21-115 (116)
16 2dmj_A Poly (ADP-ribose) polym 99.9 5.7E-27 2E-31 218.5 8.9 95 1-95 8-104 (106)
17 1uw0_A DNA ligase III; DNA rep 99.9 7.2E-26 2.5E-30 214.6 6.5 91 1-93 1-100 (117)
18 3odc_A Poly [ADP-ribose] polym 99.9 1.1E-25 3.6E-30 210.7 4.6 89 4-92 6-101 (111)
19 2cs2_A Poly [ADP-ribose] polym 99.9 5.6E-25 1.9E-29 212.4 6.5 110 5-114 15-132 (134)
20 4av1_A Poly [ADP-ribose] polym 99.8 6.1E-22 2.1E-26 206.9 0.0 84 5-88 131-221 (223)
21 4f0d_A PARP-16, poly [ADP-ribo 99.8 2.3E-19 7.8E-24 192.5 9.1 118 741-870 94-219 (277)
22 1v9x_A Poly (ADP-ribose) polym 99.7 8.3E-19 2.8E-23 164.9 5.5 82 104-185 9-93 (114)
23 3odc_A Poly [ADP-ribose] polym 99.7 2.1E-19 7.3E-24 168.1 1.0 87 100-186 4-100 (111)
24 2cs2_A Poly [ADP-ribose] polym 99.7 2.1E-18 7.2E-23 166.6 6.4 90 97-186 9-108 (134)
25 2dmj_A Poly (ADP-ribose) polym 99.7 2E-18 6.9E-23 160.9 4.3 81 103-183 13-97 (106)
26 1uw0_A DNA ligase III; DNA rep 99.7 2.3E-18 7.8E-23 163.2 4.1 81 104-184 4-96 (117)
27 3od8_A Poly [ADP-ribose] polym 99.7 1.1E-18 3.9E-23 163.6 1.9 81 103-183 26-110 (116)
28 3l3e_A DNA topoisomerase 2-bin 99.2 3.7E-11 1.3E-15 112.2 8.2 84 364-447 11-103 (107)
29 2d8m_A DNA-repair protein XRCC 98.9 1.8E-09 6.1E-14 104.3 8.1 81 365-448 19-108 (129)
30 2cok_A Poly [ADP-ribose] polym 98.9 1.5E-09 5.1E-14 102.2 5.5 75 362-436 4-87 (113)
31 3l46_A Protein ECT2; alternati 98.9 7.4E-10 2.5E-14 104.2 3.0 80 365-447 18-106 (112)
32 2ebw_A DNA repair protein REV1 98.7 2.7E-08 9.4E-13 90.8 8.5 80 363-447 7-96 (97)
33 4id3_A DNA repair protein REV1 98.7 3E-08 1E-12 89.2 8.4 76 366-446 5-91 (92)
34 2cou_A ECT2 protein; BRCT doma 98.7 1.4E-08 4.9E-13 95.1 5.1 81 365-448 9-98 (109)
35 3olc_X DNA topoisomerase 2-bin 98.4 1.8E-07 6.3E-12 102.7 7.4 80 365-447 196-285 (298)
36 3pa6_A Microcephalin; BRCT dom 98.4 6E-07 2.1E-11 83.7 8.3 81 366-449 5-98 (107)
37 1l7b_A DNA ligase; BRCT, autos 98.3 3.7E-07 1.3E-11 82.8 5.4 68 365-435 4-80 (92)
38 3ef1_A RNA polymerase II subun 98.3 6.7E-07 2.3E-11 102.4 7.6 78 366-446 350-441 (442)
39 3ef0_A RNA polymerase II subun 98.3 9.5E-07 3.2E-11 99.7 8.4 78 366-446 280-371 (372)
40 2k6g_A Replication factor C su 98.2 2.2E-06 7.6E-11 80.1 8.2 67 366-435 30-107 (109)
41 2ebu_A Replication factor C su 98.2 5E-06 1.7E-10 78.0 9.7 69 366-436 20-98 (112)
42 1wf6_A Similar to S.pombe -RAD 98.2 4.1E-06 1.4E-10 80.9 8.8 79 365-447 37-127 (132)
43 3pc6_A DNA repair protein XRCC 98.1 5E-06 1.7E-10 77.0 8.3 79 367-448 6-96 (104)
44 3sqd_A PAX-interacting protein 98.0 3.9E-06 1.3E-10 88.1 6.0 80 366-447 11-98 (219)
45 2vxb_A DNA repair protein RHP9 98.0 9.7E-06 3.3E-10 86.3 9.0 78 368-447 2-117 (241)
46 1l0b_A BRCA1; TANDEM-BRCT, thr 98.0 7.3E-06 2.5E-10 86.0 7.9 82 367-448 3-96 (229)
47 2nte_A BARD-1, BRCA1-associate 97.9 1.1E-05 3.9E-10 83.6 7.0 77 371-447 2-87 (210)
48 1t15_A Breast cancer type 1 su 97.9 1.2E-05 4.2E-10 83.1 7.2 78 370-447 3-92 (214)
49 3al2_A DNA topoisomerase 2-bin 97.9 1.8E-05 6.3E-10 83.9 7.5 81 366-448 4-95 (235)
50 1kzy_C Tumor suppressor P53-bi 97.8 2.7E-05 9.3E-10 83.7 8.6 80 366-447 13-136 (259)
51 2etx_A Mediator of DNA damage 97.8 3.5E-05 1.2E-09 80.0 7.6 78 365-447 6-91 (209)
52 3ii6_X DNA ligase 4; XRCC4, NH 97.6 0.0001 3.6E-09 79.3 9.3 80 364-447 6-96 (263)
53 3u3z_A Microcephalin; DNA repa 97.6 8.6E-05 2.9E-09 76.7 7.8 76 371-448 11-96 (199)
54 3olc_X DNA topoisomerase 2-bin 97.6 7E-05 2.4E-09 82.2 6.9 73 366-441 103-184 (298)
55 3l41_A BRCT-containing protein 97.1 0.00043 1.5E-08 72.6 6.2 75 368-447 5-87 (220)
56 2ep8_A Pescadillo homolog 1; A 96.7 0.0029 1E-07 58.0 7.3 74 363-445 7-100 (100)
57 1l0b_A BRCA1; TANDEM-BRCT, thr 96.7 0.0016 5.5E-08 68.0 5.9 82 366-447 115-213 (229)
58 3u3z_A Microcephalin; DNA repa 96.6 0.0019 6.5E-08 66.5 5.4 74 365-447 116-198 (199)
59 1t15_A Breast cancer type 1 su 96.4 0.003 1E-07 65.0 5.8 83 365-447 112-211 (214)
60 1z56_C DNA ligase IV; DNA repa 96.4 0.00087 3E-08 71.8 1.6 77 366-446 3-100 (264)
61 1dgs_A DNA ligase; AMP complex 96.2 0.00077 2.6E-08 81.0 0.0 68 366-436 585-661 (667)
62 2owo_A DNA ligase; protein-DNA 96.1 0.00088 3E-08 80.5 0.0 66 366-434 595-670 (671)
63 2jw5_A DNA polymerase lambda; 96.0 0.0047 1.6E-07 57.2 4.5 82 364-446 7-103 (106)
64 3ii6_X DNA ligase 4; XRCC4, NH 96.0 0.011 3.8E-07 63.4 8.0 80 366-446 162-263 (263)
65 2coe_A Deoxynucleotidyltransfe 95.9 0.02 6.9E-07 54.1 7.9 80 362-444 14-111 (120)
66 2ra8_A Uncharacterized protein 95.7 0.0089 3E-07 67.1 6.0 56 496-559 9-65 (362)
67 2etx_A Mediator of DNA damage 95.6 0.015 5.1E-07 60.1 6.6 81 366-450 113-205 (209)
68 3pc7_A DNA ligase 3; DNA repai 95.5 0.0097 3.3E-07 53.2 4.2 64 366-441 14-87 (88)
69 1z56_C DNA ligase IV; DNA repa 94.9 0.018 6E-07 61.6 4.4 82 365-446 157-261 (264)
70 1kzy_C Tumor suppressor P53-bi 94.3 0.056 1.9E-06 57.8 6.9 78 366-444 153-249 (259)
71 2nte_A BARD-1, BRCA1-associate 93.2 0.06 2E-06 55.4 4.4 75 366-442 102-209 (210)
72 3al2_A DNA topoisomerase 2-bin 92.6 0.087 3E-06 55.5 4.7 81 366-447 133-229 (235)
73 3sqd_A PAX-interacting protein 92.5 0.21 7.3E-06 51.9 7.5 76 366-445 120-217 (219)
74 2dun_A POL MU, DNA polymerase 91.8 0.077 2.6E-06 50.8 2.7 83 365-447 7-108 (133)
75 2l42_A DNA-binding protein RAP 89.1 0.27 9.1E-06 44.4 3.6 81 366-447 9-95 (106)
76 2cup_A Skeletal muscle LIM-pro 81.3 1.2 4E-05 39.9 4.0 31 115-153 66-96 (101)
77 2rnn_A E3 SUMO-protein ligase 80.6 2.8 9.7E-05 38.9 6.2 47 222-269 26-72 (114)
78 4gns_A Chitin biosynthesis pro 79.0 2.9 9.9E-05 41.2 6.1 52 395-446 201-253 (290)
79 3l41_A BRCT-containing protein 74.1 4.5 0.00016 41.9 6.5 77 366-442 111-210 (220)
80 2akl_A PHNA-like protein PA012 70.8 1.8 6E-05 40.9 2.1 34 267-300 21-55 (138)
81 2do1_A Nuclear protein HCC-1; 69.8 5 0.00017 32.5 4.3 35 236-270 12-46 (55)
82 1h1j_S THO1 protein; SAP domai 67.9 6.2 0.00021 31.5 4.4 32 236-267 7-38 (51)
83 2vxb_A DNA repair protein RHP9 67.6 5.8 0.0002 41.6 5.6 68 366-440 149-240 (241)
84 1zrj_A E1B-55KDA-associated pr 64.6 8.4 0.00029 30.6 4.5 33 236-268 12-44 (50)
85 1pft_A TFIIB, PFTFIIBN; N-term 62.5 5.6 0.00019 31.1 3.2 21 273-293 5-28 (50)
86 2kvu_A MKL/myocardin-like prot 61.4 8.7 0.0003 33.0 4.4 34 236-269 28-61 (75)
87 2kpi_A Uncharacterized protein 48.1 13 0.00045 30.1 3.2 22 273-294 10-31 (56)
88 1wfx_A Probable RNA 2'-phospho 44.5 6.6 0.00023 39.7 1.1 22 800-821 92-113 (186)
89 2vpb_A Hpygo1, pygopus homolog 40.2 12 0.0004 31.3 1.8 33 18-57 9-41 (65)
90 3f6q_B LIM and senescent cell 37.1 14 0.00047 30.3 1.8 33 113-153 9-41 (72)
91 1x4l_A Skeletal muscle LIM-pro 35.9 15 0.0005 30.4 1.8 32 114-153 4-37 (72)
92 1x61_A Thyroid receptor intera 35.3 13 0.00044 30.7 1.3 31 115-153 5-35 (72)
93 3huf_A DNA repair and telomere 35.1 31 0.0011 37.6 4.6 51 384-435 126-187 (325)
94 1wyh_A SLIM 2, skeletal muscle 33.4 16 0.00054 30.1 1.6 30 116-153 6-35 (72)
95 1x63_A Skeletal muscle LIM-pro 32.8 16 0.00056 30.9 1.6 30 116-153 16-45 (82)
96 1dl6_A Transcription factor II 32.7 18 0.00062 29.4 1.7 28 272-306 10-40 (58)
97 2cor_A Pinch protein; LIM doma 31.9 18 0.00061 30.8 1.7 29 115-153 15-43 (79)
98 2pk7_A Uncharacterized protein 31.5 27 0.00092 29.5 2.7 22 273-294 8-31 (69)
99 1x63_A Skeletal muscle LIM-pro 31.0 30 0.001 29.2 3.0 38 12-59 10-47 (82)
100 2jny_A Uncharacterized BCR; st 30.8 29 0.00099 29.2 2.7 22 273-294 10-33 (67)
101 2js4_A UPF0434 protein BB2007; 30.3 33 0.0011 29.0 3.0 22 273-294 8-31 (70)
102 1x4k_A Skeletal muscle LIM-pro 29.3 17 0.00059 29.9 1.1 30 116-153 6-35 (72)
103 2jr6_A UPF0434 protein NMA0874 28.8 31 0.0011 29.0 2.6 22 273-294 8-31 (68)
104 3u50_C Telomerase-associated p 28.6 30 0.001 34.5 2.9 31 273-311 42-73 (172)
105 2gai_A DNA topoisomerase I; zi 28.5 7.5 0.00026 46.6 -1.8 36 270-309 569-610 (633)
106 1l8d_A DNA double-strand break 28.3 77 0.0026 28.6 5.5 12 273-284 47-58 (112)
107 2d8y_A Eplin protein; LIM doma 27.4 24 0.00082 30.7 1.8 33 112-153 12-44 (91)
108 1nyp_A Pinch protein; LIM doma 27.3 22 0.00075 28.8 1.4 28 116-153 6-33 (66)
109 2cur_A Skeletal muscle LIM-pro 27.2 46 0.0016 27.0 3.4 33 14-58 2-34 (69)
110 2hf1_A Tetraacyldisaccharide-1 27.0 34 0.0012 28.8 2.5 22 273-294 8-31 (68)
111 1jjr_A KU70, thyroid autoantig 26.9 69 0.0023 31.2 5.0 46 221-268 50-95 (151)
112 2ehe_A Four and A half LIM dom 26.8 27 0.00092 29.6 1.9 30 116-153 16-45 (82)
113 1nui_A DNA primase/helicase; z 26.4 19 0.00066 37.6 1.1 30 269-305 10-42 (255)
114 1jjr_A KU70, thyroid autoantig 26.0 14 0.00049 36.0 0.0 44 222-267 105-148 (151)
115 2cup_A Skeletal muscle LIM-pro 25.9 23 0.00078 31.3 1.3 33 113-153 3-35 (101)
116 1x4l_A Skeletal muscle LIM-pro 25.9 35 0.0012 28.0 2.5 35 14-58 2-38 (72)
117 1a7i_A QCRP2 (LIM1); LIM domai 25.3 21 0.00072 30.2 1.0 30 115-153 7-36 (81)
118 2d8x_A Protein pinch; LIM doma 24.5 57 0.0019 26.5 3.5 33 15-59 3-35 (70)
119 2xb1_A Pygopus homolog 2, B-ce 24.4 41 0.0014 30.6 2.8 32 19-57 5-36 (105)
120 1iml_A CRIP, cysteine rich int 23.8 27 0.00092 29.2 1.3 28 117-153 2-29 (76)
121 2egq_A FHL1 protein; LIM domai 23.6 27 0.00091 29.2 1.3 30 116-153 16-48 (77)
122 2co8_A NEDD9 interacting prote 23.2 31 0.001 29.5 1.6 30 115-153 15-44 (82)
123 2l3k_A Rhombotin-2, linker, LI 22.9 26 0.0009 32.3 1.2 30 116-153 9-38 (123)
124 2k4x_A 30S ribosomal protein S 22.3 35 0.0012 27.5 1.6 26 273-305 18-45 (55)
125 2nuw_A 2-keto-3-deoxygluconate 22.2 1.1E+02 0.0037 32.6 6.1 55 607-661 222-282 (288)
126 1g47_A Pinch protein; LIM doma 21.6 27 0.00092 29.1 0.9 31 115-153 11-41 (77)
127 2d8y_A Eplin protein; LIM doma 20.9 55 0.0019 28.3 2.8 35 13-58 11-45 (91)
128 3t7k_A RTT107, regulator of TY 20.5 2.1E+02 0.0071 30.1 7.5 77 369-447 20-119 (256)
129 2d8z_A Four and A half LIM dom 20.4 33 0.0011 28.0 1.2 28 116-153 6-33 (70)
130 2egq_A FHL1 protein; LIM domai 20.2 78 0.0027 26.2 3.5 37 12-58 10-49 (77)
131 1w3i_A EDA, 2-keto-3-deoxy glu 20.1 1.4E+02 0.0048 31.8 6.5 56 607-662 224-285 (293)
132 2dar_A PDZ and LIM domain prot 20.1 73 0.0025 27.4 3.4 33 111-153 21-53 (90)
133 2dj7_A Actin-binding LIM prote 20.0 70 0.0024 27.1 3.3 32 16-58 14-45 (80)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=6.9e-125 Score=1091.88 Aligned_cols=482 Identities=49% Similarity=0.862 Sum_probs=429.0
Q ss_pred CcceeeeecCCcccCCCCCCCCccEEeecCCeeEEEEEEeecCCCCCccEEEEEEEEcCCCCcEEEEEEeeecccccCCC
Q 035625 453 SSMVTIKVKGRSAVHEASGMQDTGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGG 532 (954)
Q Consensus 453 ~~~~~~~~kg~~~Vd~~s~l~~~~hV~~d~~~~Y~~~L~~tdi~~~~N~fY~lQll~~~~~~~y~v~~~WGRVG~~~~G~ 532 (954)
++++++++||+++|||+|++++.+|||++++.+|+|+|++||++.|+|+||+|||++++..+.|+||++|||||+. +|+
T Consensus 4 ~~~~~~~~kg~~~Vd~~~~~~~~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~-~Gq 82 (506)
T 4dqy_C 4 EKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTV-IGS 82 (506)
T ss_dssp -----------CCCCGGGSCTTTSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSS-CEE
T ss_pred CceEEEEEeCCeecCCccCCCCceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCcc-ccc
Confidence 4568899999999999999999999999999999999999999999999999999998877899999999999985 389
Q ss_pred ccccCC-CHHHHHHHHHHHHHHHhCCCccchhhcccCccCCCcceeccccCCCcccccccccccccc--cCCCCCCCCcH
Q 035625 533 SKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTGYCTSYSLSDYGVNKQVSEK--IGTDADSQLAP 609 (954)
Q Consensus 533 ~kl~~~-s~e~Ai~~F~k~F~eKTGn~W~~~~~r~~f~k~pgKy~~ve~~~~~s~~d~~~~~~~~~~--~~~~~~s~L~~ 609 (954)
+++++| ++++|+++|+++|++||||.|++ | +|+++||||++|| +||+.+++...+ .....+|+|++
T Consensus 83 ~~l~~~~s~~~Ai~~F~k~F~~KTgn~W~~---R-~f~k~pgKy~~ve-------~d~~~~~~~~~~~~~~~~~~s~L~~ 151 (506)
T 4dqy_C 83 NKLEQMPSKEDAIEHFMKLYEEKTGNAWHS---K-NFTKYPKKFYPLE-------IDYGQDEEAVKKLTVNPGTKSKLPK 151 (506)
T ss_dssp EEEECCSCSHHHHHHHHHHHHHHHSSCSSC---S-SCCCCTTCCEEEC-------BC-----------------CCCSCH
T ss_pred ceeccCCCHHHHHHHHHHHHHHHhcCCccc---c-CccccCCccceee-------cccccchhhhhhhcccCCCCCCCCH
Confidence 999988 69999999999999999999974 7 9999999999999 999765433221 22457899999
Q ss_pred HHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhccccccccC
Q 035625 610 ALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRFFTVIPS 689 (954)
Q Consensus 610 ~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh 689 (954)
+||+||++|||+++|+++|++|++|+.+||||+||++||.+||+||++|+++|++.. .++.|.+|||+|||+|||
T Consensus 152 ~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~lsn~fYtlIPh 226 (506)
T 4dqy_C 152 PVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS-----SDSQILDLSNRFYTLIPH 226 (506)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHhhhhEeCCc
Confidence 999999999999999999999999999999999999999999999999999998653 346899999999999999
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCC--CCCCCchHHHHhhcCCEEEECCCCCHHHHHHHHHHHhcC
Q 035625 690 I----HPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFD--VDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEKYLHATH 763 (954)
Q Consensus 690 ~----~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~--~~~~~pld~~Y~~L~~~i~~L~~~s~Ey~~I~~y~~~t~ 763 (954)
+ +||+|++.++|++|++||++|.|||+|++|++.. ....||||++|++|+|+|++|+++|+||++|++||.+|+
T Consensus 227 ~fg~~~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~ 306 (506)
T 4dqy_C 227 DFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTH 306 (506)
T ss_dssp CCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTC
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhcc
Confidence 7 7999999999999999999999999999999643 346899999999999999999999999999999999999
Q ss_pred CCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcceeeeeeeeccccc
Q 035625 764 APTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLV 843 (954)
Q Consensus 764 ~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~ 843 (954)
+++|..++++|++||||+|++|+++|+.+ ++++|+++|||||+.+|+++||++||+++|++|+.+|+|||+|||||+++
T Consensus 307 ~~~h~~~~~~I~~I~rI~~~~e~~~f~~~-k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~a 385 (506)
T 4dqy_C 307 ATTHNAYDLEVIDIFKIEREGECQRYKPF-KQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMV 385 (506)
T ss_dssp CSSCTTCCCCEEEEEEEEETTTTTTTHHH-HSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSH
T ss_pred CcccccCCceeEeEEEEccHHHHhhHHHh-hcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchh
Confidence 99998889999999999999999999987 67899999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCCCccccCCccCCCCCceeecCCeEecCCCcccCCCC
Q 035625 844 SKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVR 923 (954)
Q Consensus 844 sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~ 923 (954)
|||++||.++..++.++||||+|+||+++++++++++++||+|||||+|+|++.|+|++. .+.|||+||+|+|+++...
T Consensus 386 skS~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~ 464 (506)
T 4dqy_C 386 SKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVN 464 (506)
T ss_dssp HHHHTTSCCCSSSCEEEEEEEEEECCSEEEESSCCCCSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCC
T ss_pred hccccccCCCCCCCeEEEEEEEEecCCceecccchhhhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCC
Confidence 999999999877889999999999999999998888999999999999999999999998 7889999999999998888
Q ss_pred CCCCCCCEEEEeeCCccceeeEEEEEeeec
Q 035625 924 ASELMYNEYIVYNTAQVKMQFLLKVRFHHK 953 (954)
Q Consensus 924 ~~~l~ynEyIVYd~~Qv~~~YLi~~~~~~~ 953 (954)
+++|+||||||||++||+|||||+|+|+|+
T Consensus 465 ~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~ 494 (506)
T 4dqy_C 465 DTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494 (506)
T ss_dssp CCSCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred CCcccccceEEEchHHeeEEEEEEEEEEcc
Confidence 899999999999999999999999999987
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=3.4e-92 Score=787.60 Aligned_cols=341 Identities=46% Similarity=0.824 Sum_probs=320.4
Q ss_pred CCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhcc
Q 035625 603 ADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNR 682 (954)
Q Consensus 603 ~~s~L~~~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~ 682 (954)
.+|+|+++||+||++|||+++|+++|++|++|+.+||||+||+.||++||+||++|+++|++.. ....|.+|||+
T Consensus 19 ~~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~lsn~ 93 (368)
T 3kjd_A 19 YFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQ-----HGRALMEACNE 93 (368)
T ss_dssp HHCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999999998753 23579999999
Q ss_pred ccccccCC----CCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCC-CCCCCchHHHHhhcCCEEEECCCCCHHHHHHHH
Q 035625 683 FFTVIPSI----HPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFD-VDSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEK 757 (954)
Q Consensus 683 fYtlIPh~----~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~-~~~~~pld~~Y~~L~~~i~~L~~~s~Ey~~I~~ 757 (954)
|||+|||+ +||+|+|.++|++|++|||+|.||++|++|++.. ....||+|++|++|+|+|++|+++|+||++|++
T Consensus 94 fYtlIPh~fg~~~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~ 173 (368)
T 3kjd_A 94 FYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQ 173 (368)
T ss_dssp HHHHSCBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC----CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHH
T ss_pred hhhhCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhcCcEEEEcCCCChHHHHHHH
Confidence 99999997 7999999999999999999999999999999643 345799999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcceeeeeee
Q 035625 758 YLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGI 837 (954)
Q Consensus 758 y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGymFGkGI 837 (954)
||.+|++++|..++++|++||||+|.+|+++|+ ++++|+++|||||+.+|+.+||++||+++|++++.+|+|||+||
T Consensus 174 y~~~T~~~~h~~~~~~I~~IfrI~r~~e~~~F~---k~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGI 250 (368)
T 3kjd_A 174 YLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFR---EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGI 250 (368)
T ss_dssp HHHHTCCTTCTTCEEEEEEEEEEEETTHHHHSC---TTCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSE
T ss_pred HHHhcCCcccCcCceeEEEEEEecchHHHHHHh---hcCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEE
Confidence 999999999988899999999999999999997 57899999999999999999999999999999999999999999
Q ss_pred ecccccccccccccCCCCCCceEEEEEEEeeCceeeeccccC-CCCCCCCCCCccccCCccCCCCCceeecCCeEecCCC
Q 035625 838 YFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGK 916 (954)
Q Consensus 838 YFAd~~sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~-~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~ 916 (954)
|||+++|||++||.++.+++.++||||+|+||++++++.+++ +.+||+|||||+|+|++.|+|++.+++ |||+||+|+
T Consensus 251 YFA~~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~-dgv~vP~G~ 329 (368)
T 3kjd_A 251 YFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGP 329 (368)
T ss_dssp EEBSSHHHHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEE-TTEEECCSC
T ss_pred EccccccccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCccccccc-CCEEeeCCC
Confidence 999999999999998777899999999999999999998875 789999999999999999999999999 999999999
Q ss_pred cccCCCCC---CCCCCCEEEEeeCCccceeeEEEEEeee
Q 035625 917 PVPSNVRA---SELMYNEYIVYNTAQVKMQFLLKVRFHH 952 (954)
Q Consensus 917 ~~~~~~~~---~~l~ynEyIVYd~~Qv~~~YLi~~~~~~ 952 (954)
+++++..+ .+|+||||||||++||||||||+|+|+|
T Consensus 330 ~~~~~~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~~ 368 (368)
T 3kjd_A 330 ASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368 (368)
T ss_dssp EEECCCCCSSSCCEEECEEEESSGGGEEEEEEEEEEEEC
T ss_pred cccCCCCCCcCccccCCceEEechhHeeEEEEEEEEeEC
Confidence 99776533 3799999999999999999999999987
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=1.3e-89 Score=768.79 Aligned_cols=344 Identities=50% Similarity=0.877 Sum_probs=326.9
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhccc
Q 035625 604 DSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASNRF 683 (954)
Q Consensus 604 ~s~L~~~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~f 683 (954)
+|+|+++||+||++|||+++|+++|++|++|+.+||||+||++||++||+||++|+++|++.. .++.|.+|||+|
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~-----~~~~l~~ls~~f 75 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGG-----SESQILDLSNRF 75 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHhH
Confidence 589999999999999999999999999999999999999999999999999999999998754 357899999999
Q ss_pred cccccCC----CCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCC-C-CCCCchHHHHhhcCCEEEECCCCCHHHHHHHH
Q 035625 684 FTVIPSI----HPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFD-V-DSDDSLDEKYKKLCCDIAPLPHDSEDYQLIEK 757 (954)
Q Consensus 684 YtlIPh~----~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~-~-~~~~pld~~Y~~L~~~i~~L~~~s~Ey~~I~~ 757 (954)
||+|||+ +||+|++.++|++|++|||+|.|||+|++|++.. . ...||+|.+|++|+|+|++|+++|+||++|++
T Consensus 76 yt~IPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~ 155 (350)
T 1efy_A 76 YTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQ 155 (350)
T ss_dssp HHHSCBCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHH
T ss_pred HhhcCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHH
Confidence 9999996 8999999999999999999999999999999533 2 33799999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcceeeeeee
Q 035625 758 YLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGI 837 (954)
Q Consensus 758 y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGymFGkGI 837 (954)
||.+|++++|..++++|.+||||+|++++++|..+ ++.+|+++|||||+.+|+.+||++||+++|++++.+|+|||+||
T Consensus 156 ~~~~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~-k~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~Gi 234 (350)
T 1efy_A 156 YVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPF-KQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGI 234 (350)
T ss_dssp HHHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGG-GGSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSE
T ss_pred HHhcccCCCCCCCcccccceEEecCHHHHHHHHHh-hccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCceeccc
Confidence 99999999998789999999999999999999987 67899999999999999999999999999999999999999999
Q ss_pred ecccccccccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCCCccccCCccCCCCCceeecCCeEecCCCc
Q 035625 838 YFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 917 (954)
Q Consensus 838 YFAd~~sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~ 917 (954)
|||++++||++||.++..++.++||||+|+||++.++..++++.+||+|+|||+|+|++.|+|++ ..+.|||+||+|++
T Consensus 235 Yfa~~~skS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~~~~~p~g~~Sv~g~g~~~Pd~~~-~~~~dgv~vP~G~~ 313 (350)
T 1efy_A 235 YFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTA-TTTLDGVEVPLGNG 313 (350)
T ss_dssp EEBSSHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCCCCSCCTTCCEEEECCSEEECGGG-CEEETTEEECCSCE
T ss_pred ccccchhhhhccccCCCCCCeEEEEEEEEecCCceeccCcchhhhcCCCCcceeeccccCCCccc-cccCCCeeeecCcc
Confidence 99999999999999887788999999999999999999988899999999999999999999998 67899999999999
Q ss_pred ccCCCCCCCCCCCEEEEeeCCccceeeEEEEEeeecC
Q 035625 918 VPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHKR 954 (954)
Q Consensus 918 ~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~~~~~~ 954 (954)
+++...+++|.||||||||++||+|+|||+|+|+|++
T Consensus 314 ~~~~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~~~ 350 (350)
T 1efy_A 314 ISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYKT 350 (350)
T ss_dssp EECSCCSSSCSBCEEEESCGGGEEEEEEEEEEEEECC
T ss_pred cCCCCCCCCCCCCEEEEEchhheeEEEEEEEEEEecC
Confidence 9888778899999999999999999999999999985
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=2.1e-82 Score=712.82 Aligned_cols=336 Identities=35% Similarity=0.609 Sum_probs=308.7
Q ss_pred CCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCchhhhHHHHhhc
Q 035625 602 DADSQLAPALVELMKMLFNVETYRAAMMEFDINMSEMPLGKLSKNNIQKGFEALTEIQNLLNNGAYDPSVKESLIIDASN 681 (954)
Q Consensus 602 ~~~s~L~~~Vq~l~~~Ifd~~~~~~~m~~~~~d~~kmPLGkLSk~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn 681 (954)
..+|+|+++||+||++|||+++|+++|++|+||+.+||||+||++||++||+||++|+++|++.... ...|.+|||
T Consensus 5 ~~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~----~~~~~~ls~ 80 (357)
T 3c4h_A 5 VQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDG----GQSLEELSS 80 (357)
T ss_dssp ECCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCS----CCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccccc----hHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999865432 234899999
Q ss_pred cccccccCC----CCCCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCCC-CC-----CCchHHHHhhcCCEEEECCCCCHH
Q 035625 682 RFFTVIPSI----HPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDV-DS-----DDSLDEKYKKLCCDIAPLPHDSED 751 (954)
Q Consensus 682 ~fYtlIPh~----~p~~i~~~~~l~~k~~lle~L~die~A~~ll~~~~-~~-----~~pld~~Y~~L~~~i~~L~~~s~E 751 (954)
+|||+|||+ +||+|+|.++|++|++|||+|.||++|++|++... .. .||+|++|++|+|+|++|+++|+|
T Consensus 81 ~fyt~IPh~fg~~~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~E 160 (357)
T 3c4h_A 81 HFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPE 160 (357)
T ss_dssp HHHHHSCBCSTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCTTSTT
T ss_pred HHHhhcCcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCCCChH
Confidence 999999996 89999999999999999999999999999996432 22 699999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhhcCCcceeEecCCCCChhhhhccCCCCCCCCCCCcce
Q 035625 752 YQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGY 831 (954)
Q Consensus 752 y~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Glriap~~ap~tGy 831 (954)
|++|++||.+| +++|.. +.|.+||||+|++++++|..+ ++.+|+++|||||+.+|+.+|+++||+++|+ +|+
T Consensus 161 y~~I~~~f~~t-~~~~~~--~~I~~I~rV~n~~~~~rF~~~-k~~~n~~~LfHGt~~~~~~~I~~~Gf~~~~~----~g~ 232 (357)
T 3c4h_A 161 YKVIQTYLEQT-GSNHRC--PTLQHIWKVNQEGEEDRFQAH-SKLGNRKLLWHGTNMAVVAAILTSGLRIMPH----SGG 232 (357)
T ss_dssp HHHHHHHHHHH-SCSSSC--CCEEEEEEEECTTSHHHHHTT-TTCCCEEEEEEEECHHHHHHHHHHCSCCCTT----CCC
T ss_pred HHHHHHHHHhc-CCCCCC--ccEEEEEEecCHHHHHHHHHH-hccCCeEEEEeCCChhhHHHHHHcCCcccCC----CCC
Confidence 99999999999 778853 899999999999999999987 5689999999999999999999999999764 899
Q ss_pred eeeeeeeccccccccccccc--CCCCCCceEEEEEEEeeCceeeeccccC-CCCCCCCCCCccccCCccCCCCCceeec-
Q 035625 832 MFGKGIYFADLVSKSAQYCF--TDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWR- 907 (954)
Q Consensus 832 mFGkGIYFAd~~sKSa~Yc~--~~~~~~~~~mlLceVaLG~~~~~~~~~~-~~~~p~g~~Sv~g~G~~~P~p~~~~~~~- 907 (954)
|||+|||||++++||++||. ++.+++.++||||+|+||++++++.+++ +..||+|+|||+|+|++.|+|+.++.+.
T Consensus 233 ~fG~GiYfa~~~skS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~ 312 (357)
T 3c4h_A 233 RVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELEL 312 (357)
T ss_dssp TTCSSEEEBSSHHHHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEE
T ss_pred ceECCEecCCcchhhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeecc
Confidence 99999999999999999999 6556788999999999999999988876 6789999999999999999999988885
Q ss_pred CC--eEecCCCcccCC-CCCCCCCCCEEEEeeCCccceeeEEEEE
Q 035625 908 DD--VTVPCGKPVPSN-VRASELMYNEYIVYNTAQVKMQFLLKVR 949 (954)
Q Consensus 908 dg--v~vp~G~~~~~~-~~~~~l~ynEyIVYd~~Qv~~~YLi~~~ 949 (954)
|| |+||+|+++++. ..+++|.||||||||++||+|+|||+|+
T Consensus 313 dg~~v~vp~G~~v~~~~~~~~~l~~nEyVVYd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 313 DGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 357 (357)
T ss_dssp TTEEEEECCSCEEECGGGTTCSCSBCEEEESSGGGEEEEEEEEEC
T ss_pred CCCeEEecCCCcccCCCCCCCccCCCEEEEEchhheeEEEEEEEC
Confidence 99 999999988653 3568899999999999999999999985
No 5
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=100.00 E-value=2.6e-47 Score=398.13 Aligned_cols=182 Identities=38% Similarity=0.684 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccccccCC-CCCCccCCccCCCHHHHH
Q 035625 3 NPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQI-KSLDDVEGIESLRWEDQQ 81 (954)
Q Consensus 3 ~~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~~~~~-~~~~~i~G~~~L~~eDq~ 81 (954)
+++++|+|||||||||+||+|+++|+||+||||++|++++|||.+++|||++||+..+... .++++|+||++|+||||+
T Consensus 25 ~~d~~y~vEyAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~~~~~~~~~~~~I~G~~~L~~eDQe 104 (223)
T 4av1_A 25 HSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQ 104 (223)
T ss_dssp --CCSEEEEECSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTTSCCCCSCHHHHEETTTSSCHHHHH
T ss_pred CCCCcEEEEEecCCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhhhhcccCCCHHHCCChhHCCHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999876332 456889999999999999
Q ss_pred HHHHHHHhcCCCCC-----CCCccccccccceeecccchhhhhhhcccccccceeecccCCCC---CCCC-ccccccccc
Q 035625 82 KIRKYVEEGVGSGS-----SSKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQ---GTKG-LAWHHANCF 152 (954)
Q Consensus 82 ~i~~~i~~~~~~~~-----~~~~~~~~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~---~~~~-~~w~H~~Cf 152 (954)
+|+++|++++.+.. .+.++.++.+|.||||+||||+|++|+++|.||+|||++....+ +.+. ..|||+.||
T Consensus 105 kIk~~ie~g~~~~~~~~~~~~~~~~~~~~y~vEYAKS~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf 184 (223)
T 4av1_A 105 KVKKTAEAGGVTGKGQDGIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCF 184 (223)
T ss_dssp HHHHHHHC------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCCCccCCcccccccccccceEEEEeccCCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhh
Confidence 99999999885321 13455688899999999999999999999999999999975332 2232 569999999
Q ss_pred cccC------CCccccccCCCCCCCHhhHHHHHHhcCC
Q 035625 153 LDLS------PSTQVEKLSGWGNLTVSDQGAVKALVNV 184 (954)
Q Consensus 153 ~~~~------~~~~~e~l~G~~~L~~~dq~~v~~~~~~ 184 (954)
++.. +..++++|+||+.|+++||+.|+++|++
T Consensus 185 ~~~~~~l~~~~~~~~~~l~Gf~~L~~eDQ~~ikk~i~~ 222 (223)
T 4av1_A 185 VKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPG 222 (223)
T ss_dssp --------------------------------------
T ss_pred hchhhhcccCCCCChHHCCChHHCCHHHHHHHHHhccC
Confidence 9654 3457899999999999999999999874
No 6
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=100.00 E-value=2e-39 Score=319.83 Aligned_cols=127 Identities=40% Similarity=0.742 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhhhcCCCCCCCCCCCcEEEeCceEEEe
Q 035625 214 DLESKLEAQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMMFGALGRCPICSGPLRYSGGIYRCR 293 (954)
Q Consensus 214 ~~~~~lk~Q~~~~w~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~ 293 (954)
+++.+||+|+++||++||+|+++|+.++|++||++|+|.++|+++.||+||||||+||+|++||.|+|+|+|++++|+|+
T Consensus 19 ~~~~~lk~Q~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FGal~~CP~C~G~l~y~~~~Y~C~ 98 (160)
T 2riq_A 19 KLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSGQLVFKSDAYYCT 98 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHCEECCCTTTCCCEEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCCCEEEEeCCeEEEC
Confidence 44667999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCccccccccCCccccCCccccCcccchhhhHHHHhhcCCCCCCcccCC
Q 035625 294 GYQSAWSKCSYSTREPERLKGKWKIPEETNSQYLVKWFKSQRTKKPIRVLPP 345 (954)
Q Consensus 294 G~~sewtkC~~~t~~p~R~~~~~kiP~~~~~~~~~~~~~~~~~~~~~r~~~~ 345 (954)
||+||||+|+|+|++|+|. +|+||++++++ +|++++++++++|+|||
T Consensus 99 G~isewtkC~~~t~~p~R~--pwkiP~~lk~~---~fL~~~k~~~~~Ri~~~ 145 (160)
T 2riq_A 99 GDVTAWTKCMVKTQTPNRK--EWVTPKEFREI---SYLKKLKVKKQDRIFPP 145 (160)
T ss_dssp CEEETTEECCCEESSCCEE--CCCCCHHHHTH---HHHHHTCCCCCCCCCCC
T ss_pred CCCCCcccCcccCCCCCcc--CccCCHHHHhh---HHHHhCCCCCcccccCC
Confidence 9999999999999999997 99999999885 25678999999999988
No 7
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=4.2e-38 Score=335.00 Aligned_cols=180 Identities=24% Similarity=0.383 Sum_probs=152.5
Q ss_pred cCCEEEECCCCCHHHHHHHHHHHhcCCCCCCC-------CccccCceeeeecccccchhhHHHh-------hcCCcceeE
Q 035625 738 LCCDIAPLPHDSEDYQLIEKYLHATHAPTHTD-------WSLELEEVFSLEREGEFDKFSSYQR-------KLKNRMLLW 803 (954)
Q Consensus 738 L~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~-------~~~~I~~If~V~r~~e~~rf~~~k~-------~~~N~~lLw 803 (954)
.+|.|++|+++|+||++|++||.+|+++.|.. +.+.|++|+||+|+.+|++|+.+++ ..+|+++||
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~~~ne~~Lf 108 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLF 108 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 47899999999999999999999999753321 3789999999999999999987643 358999999
Q ss_pred ecCCCCChhhhhccCCCCCCCCCCCcceeeeeeeecccccccccccccCCCC-------------CCceEEEEEEEeeCc
Q 035625 804 HGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKK-------------NPVGLMLLSEVGLGE 870 (954)
Q Consensus 804 HGSr~~N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~~~-------------~~~~~mlLceVaLG~ 870 (954)
|||+ ++.+|+++||+++. +.+|+|||+|||||++++||++||.+... ++.++||||+|+||+
T Consensus 109 HGt~--~~~~I~~~Gf~~~~---~~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~lG~ 183 (240)
T 3u9h_A 109 HGSP--FVNAIIHKGFDERH---AYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGK 183 (240)
T ss_dssp ECCT--THHHHHHHCCCGGG---CBTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEECCS
T ss_pred echH--hHHHHHHcCCCccc---ccCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEecCc
Confidence 9998 57799999999863 35799999999999999999999975311 257999999999999
Q ss_pred eeeeccccCCCCCCCCCCCccccCCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEEe
Q 035625 871 VYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRF 950 (954)
Q Consensus 871 ~~~~~~~~~~~~~p~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~~ 950 (954)
+.+...+..+..||+|||||+|.. ...+|.|+||||||++||+|+|||+|+.
T Consensus 184 ~~~~~~~~~~~~pP~gyDSvvg~~----------------------------~~~~l~~~E~VVy~~~qi~P~YlI~y~~ 235 (240)
T 3u9h_A 184 SFLQFSAMKMAHSPPGHHSVTGRP----------------------------SVNGLALAEYVIYRGEQAYPEYLITYQI 235 (240)
T ss_dssp EEEEEECC--CCCCTTCSEEEEEE----------------------------SSCTTCCCEEEESCGGGEEEEEEEEEEE
T ss_pred eEeecCcccccCCCCCCCceecCC----------------------------CCCCCCCCEEEEEcccceeEEEEEEEEc
Confidence 999888777788999999999841 0135889999999999999999999985
No 8
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=321.27 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=145.4
Q ss_pred hcCCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhh-cCCcceeEecCCCCChhhhh
Q 035625 737 KLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRK-LKNRMLLWHGSRLTNFVGIL 815 (954)
Q Consensus 737 ~L~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~-~~N~~lLwHGSr~~N~~gIL 815 (954)
.++|.|++|+++|+||++|+++|.+|++ .++|.+||||+|+.++++|..+++. .+|+++|||||+.+|+.+|+
T Consensus 2 ~~~~~l~~L~~~s~ey~~v~~~f~~t~~------~~~I~~I~rv~n~~~~~~f~~~k~~~~~n~~~l~HGt~~~~~~~I~ 75 (173)
T 2x5y_A 2 SKKYKLSEIHHLHPEYVRVSEHFKASMK------NFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESIC 75 (173)
T ss_dssp -CCCEEEECCTTSHHHHHHHHHHHTTCT------TEEEEEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhHCC------CCEEeEEEEECCHHHHHHHHHHHHHHhhCcEEEEecCCcccHHHHH
Confidence 4689999999999999999999999974 4789999999999999999987544 47999999999999999999
Q ss_pred ccCCC--CCCCCCCCcceeeeeeeecccccccccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCCCcccc
Q 035625 816 SQGLR--IAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGL 893 (954)
Q Consensus 816 s~Glr--iap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~Sv~g~ 893 (954)
++||+ ++++ +|+|||+|||||+++++|++||.+.. +.++||||+|++|++... ...+..||+|||||.|.
T Consensus 76 ~~Gf~~~~~~~----~g~~~G~GiYfa~~~s~s~~Y~~~~~--~~~~m~lc~V~~G~~~~~--~~~~~~pp~~ydSv~~~ 147 (173)
T 2x5y_A 76 SNNFDSFLHET----HENKYGKGIYFAKDAIYSHKNCPYDA--KNVVMFVAQVLVGKFIEG--NITYTSPPPQFDSCVDT 147 (173)
T ss_dssp HHCCCHHHHCC----SCSSSCSSEEEESSHHHHHHHCCSCG--GGEEEEEEEECCCSEEEC--CTTCSSCCTTCCEEESC
T ss_pred HhCCCCcccCC----CcCCccCeEECCCChhhHhhcCCCCC--CCeEEEEEEEecCccccC--CcccCCCCCCCCceECC
Confidence 99994 5443 79999999999999999999998754 569999999999995532 23478899999999863
Q ss_pred CCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEE
Q 035625 894 GKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVR 949 (954)
Q Consensus 894 G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~ 949 (954)
. .+++||||||.+||+|+|||.|+
T Consensus 148 ~--------------------------------~~~~e~VV~~~~q~~P~YlI~y~ 171 (173)
T 2x5y_A 148 R--------------------------------SNPSVFVIFQKDQVYPQYVIEYT 171 (173)
T ss_dssp S--------------------------------SSCCEEEECCGGGEEEEEEEEEE
T ss_pred C--------------------------------CCCCEEEEEeCCeEeEEEEEEEe
Confidence 1 13589999999999999999986
No 9
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=317.71 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=142.0
Q ss_pred hcCCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhh--------cCCcceeEecCCC
Q 035625 737 KLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRK--------LKNRMLLWHGSRL 808 (954)
Q Consensus 737 ~L~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~--------~~N~~lLwHGSr~ 808 (954)
.++|.|++|+++|+||+.|+++|.+|++ .++|.+|+||+|+.++++|..+++. .+|+++|||||+.
T Consensus 9 ~~~~~l~~L~~~s~Ey~~v~~~f~~t~~------~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHGt~~ 82 (198)
T 2pqf_A 9 DPGFQKITLSSSSEEYQKVWNLFNRTLP------FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSA 82 (198)
T ss_dssp CCSCEEEECCTTSHHHHHHHHHHHTTCT------TSEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEECCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC------CCEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEecCCH
Confidence 4689999999999999999999999975 3689999999999999999876422 2599999999999
Q ss_pred CChhhhhccCCCCCCCCCCCcceeeeeeeecccccccccccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCCCCC
Q 035625 809 TNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKH 888 (954)
Q Consensus 809 ~N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~g~~ 888 (954)
+|+.+|+++||+++. ++.+|+|||+|||||++++||++||.+.. +.++||||+|+||++..- .. .+..||++..
T Consensus 83 ~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~--~~~~m~lcrV~~G~~~~~-~~-~~~~pp~~~~ 156 (198)
T 2pqf_A 83 IFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT--QTHTMFLARVLVGEFVRG-NA-SFVRPPAKEG 156 (198)
T ss_dssp GGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS--SEEEEEEEEEECCSEEEC-CT-TCSSCCBCSC
T ss_pred HHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC--CceEEEEEEEecCCcccC-Cc-cccCCCCCCC
Confidence 999999999997643 44579999999999999999999998764 889999999999998642 22 2344554311
Q ss_pred CccccCCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEEe
Q 035625 889 STKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRF 950 (954)
Q Consensus 889 Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~~ 950 (954)
+ ++ ...|+|+. ....++||||||.+||+|+|||+|+.
T Consensus 157 ~----------~~---~~yDSvv~------------~~~~~~e~VVy~~~qiyP~YlI~y~~ 193 (198)
T 2pqf_A 157 W----------SN---AFYDSCVN------------SVSDPSIFVIFEKHQVYPEYVIQYTT 193 (198)
T ss_dssp C---------------CBCSEEES------------CSSSCCEEEESCGGGEEEEEEEEEES
T ss_pred C----------CC---CCcccCcC------------CCCCCCEEEEECCCcEeeEEEEEEEc
Confidence 0 00 12344432 11246999999999999999999975
No 10
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=100.00 E-value=1.5e-35 Score=312.68 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=137.0
Q ss_pred hcCCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhh-------cCCcceeEecCCCC
Q 035625 737 KLCCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRK-------LKNRMLLWHGSRLT 809 (954)
Q Consensus 737 ~L~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~-------~~N~~lLwHGSr~~ 809 (954)
..+|.|++|+++|+||+.|+++|.+|++ .+.|.+|+||+|..++++|..+++. .+|+++|||||+.+
T Consensus 34 ~~~~~l~~L~~~s~ey~~V~~~f~~t~~------~~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt~~~ 107 (221)
T 3blj_A 34 HQLFCMVQLEPGQSEYNTIKDKFTRTCS------SYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDAD 107 (221)
T ss_dssp TCSEEEEECCTTSHHHHHHHHHHHHHHT------TSEEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEECGG
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHhhCC------CCEEEEEEEEcChhHHHHHHHHHHHHHHhcCCCCceEEEeccCChH
Confidence 3578999999999999999999999975 3689999999999999999876432 48999999999999
Q ss_pred ChhhhhccCCCCCCCCCCCcceeeeeeeecccccccccc--cccCCCCCCceEEEEEEEeeCceeeeccccCCCCCC---
Q 035625 810 NFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQ--YCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPP--- 884 (954)
Q Consensus 810 N~~gILs~Glriap~~ap~tGymFGkGIYFAd~~sKSa~--Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p--- 884 (954)
|+.+|+++||++ +.++.+|+|||+|||||++++||++ ||.+. .++.++||||+|+||++..-.. .+..||
T Consensus 108 ~~~~I~~~Gf~~--~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~-~~g~~~mllcrV~~G~~~~g~~--~~~~pp~~~ 182 (221)
T 3blj_A 108 SVPYVNQHGFNR--SCAGKNAVSYGKGTYFAVDASYSAKDTYSKPD-SNGRKHMYVVRVLTGVFTKGRA--GLVTPPPKN 182 (221)
T ss_dssp GHHHHHHHCCCT--TTC-----CCCSSEEEESSHHHHHSTTTSCCC-TTSCEEEEEEEEECCSEEECCT--TCSSCCBSS
T ss_pred HHHHHHHhCCCC--cccCCCCCccCCeEECCcchhhhcCcccccCC-CCCcEEEEEEEEEeCCccCCCh--hccCCCccc
Confidence 999999999995 4577789999999999999999999 77664 4678999999999999754221 122333
Q ss_pred -----CCCCCccccCCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEE
Q 035625 885 -----DGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVR 949 (954)
Q Consensus 885 -----~g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~ 949 (954)
.+||||.|. ..+++||||||.+||+|+|||.|+
T Consensus 183 ~~~~~~~yDSvv~~--------------------------------~~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 183 PHNPTDLFDSVTNN--------------------------------TRSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp TTSTTSBCSEEESC--------------------------------SSSCSEEEECSTTSEEEEEEEEEE
T ss_pred CCCCCCCCCccccC--------------------------------CCCCCEEEEEcCCeEeeeEEEEEE
Confidence 255555431 134699999999999999999986
No 11
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=310.24 Aligned_cols=174 Identities=16% Similarity=0.260 Sum_probs=143.4
Q ss_pred CCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhh-------cCCcceeEecCCCCCh
Q 035625 739 CCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRK-------LKNRMLLWHGSRLTNF 811 (954)
Q Consensus 739 ~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~-------~~N~~lLwHGSr~~N~ 811 (954)
-|.|++|+++|+||+.|++||.+|++.+|. ++.|.+|+||+|+.+|++|+.+++. ..|+++|||||+.+|+
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~--~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~~~ 87 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAARS--SIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAV 87 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGGG--TEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGGGH
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcCC--CceEEEEEEECChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHH
Confidence 478999999999999999999999976653 5789999999999999999876432 4799999999999999
Q ss_pred hhhhccCCCCCCCCCCCcceeeeeeeeccccccccc--ccccCCCCCCceEEEEEEEeeCceeeeccccCCCCCCC----
Q 035625 812 VGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSA--QYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPD---- 885 (954)
Q Consensus 812 ~gILs~Glriap~~ap~tGymFGkGIYFAd~~sKSa--~Yc~~~~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~---- 885 (954)
.+|+++||+.+ -++.+|+|||+|||||++++||+ +||.+. .++.++||||+|+||++.. ... .+..||.
T Consensus 88 ~~I~~~GF~~~--~~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~-~~g~~~m~lcrVl~G~~~~-g~~-~~~~PP~~~~~ 162 (217)
T 3hkv_A 88 PDICAHGFNRS--FCGRNATVYGKGVYFAKRASLSVQDRYSPPN-ADGHKAVFVARVLTGDYGQ-GRR-GLRAPPLRGPG 162 (217)
T ss_dssp HHHHHHCSCTT--TSCCCCCTTCSSEEEESSHHHHTSTTTSCCC-TTSEEEEEEEEEECCSEEE-CCT-TCSSSCBCCTT
T ss_pred HHHHhcCCccc--ccCcchhccccceeccCCccccccccccccc-CCCceEEEEEEEEcccccc-CCC-ccCCCCCCccC
Confidence 99999999753 23457899999999999999997 698765 4678999999999999643 222 2334443
Q ss_pred ----CCCCccccCCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEEee
Q 035625 886 ----GKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFH 951 (954)
Q Consensus 886 ----g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~~~ 951 (954)
+||||.+- ..+++||||||.+||+|.|||+|+-.
T Consensus 163 ~~~~~yDSvvd~--------------------------------~~np~~~VVf~~~qiyPeYLI~y~~~ 200 (217)
T 3hkv_A 163 HVLLRYDSAMDC--------------------------------ICQPSIFVIFHDTQALPTHLITCEHV 200 (217)
T ss_dssp CSSSBCSEEESC--------------------------------SSSCCEEEECCTTSEEEEEEEEEEEC
T ss_pred CCCCceeEEECC--------------------------------CCCCCEEEEEcCCcCceeEEEEEecC
Confidence 47776641 13468999999999999999999854
No 12
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=100.00 E-value=4.1e-35 Score=303.10 Aligned_cols=169 Identities=15% Similarity=0.226 Sum_probs=138.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeeecccccchhhHHHhh-------cCCcceeEecCCCCCh
Q 035625 739 CCDIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRK-------LKNRMLLWHGSRLTNF 811 (954)
Q Consensus 739 ~~~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~r~~e~~rf~~~k~~-------~~N~~lLwHGSr~~N~ 811 (954)
+|.|++|+++|+||+.|+++|.+|+. .++|.+|+||+|+.+|++|..+++. .+|+++|||||+.+|+
T Consensus 8 ~~~l~~L~~~s~Ey~~V~~~f~~t~~------~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~~~~ 81 (193)
T 3smj_A 8 NFCVVELLPSDPEYNTVASKFNQTCS------HFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSV 81 (193)
T ss_dssp CEEEEECCTTSTTHHHHHHHHHHHHT------TSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECGGGH
T ss_pred CEEEEECCCCChHHHHHHHHHHhhCC------CCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCHHHH
Confidence 57899999999999999999999974 4789999999999999999876432 4699999999999999
Q ss_pred hhhhccCCCCCCCCCCCcceeeeeeeecccccccccccccCC-CCCCceEEEEEEEeeCceeeeccccCCCCCCC-----
Q 035625 812 VGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTD-KKNPVGLMLLSEVGLGEVYELKKAKYMDKPPD----- 885 (954)
Q Consensus 812 ~gILs~Glriap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~-~~~~~~~mlLceVaLG~~~~~~~~~~~~~~p~----- 885 (954)
.+|+++||+.. -++.+|+|||+|||||++++||++||++. ..++.++||||+|+||++..- + ..+..||+
T Consensus 82 ~~I~~~Gf~~~--~~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~~~g~~~mllcrV~~G~~~~g-~-~~~~~pP~~~~~~ 157 (193)
T 3smj_A 82 PHVNRNGFNRS--YAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHG-N-HSLIVPPSKNPQN 157 (193)
T ss_dssp HHHHHHTTCCC--CTTGGGSSSCCCEEEESSHHHHTSTTTSCCCTTSCEEEEEEEEECCSEEEC-C-SSCCSCCBSCTTS
T ss_pred HHHHHcCCCCc--cCCCCccccCCeEEecCCcchhcCccccCCCCCCcEEEEEEEEEecccccC-C-CccCCCCCccCCC
Confidence 99999999754 24457999999999999999999954432 346789999999999997642 1 22344443
Q ss_pred ---CCCCccccCCccCCCCCceeecCCeEecCCCcccCCCCCCCCCCCEEEEeeCCccceeeEEEEE
Q 035625 886 ---GKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPVPSNVRASELMYNEYIVYNTAQVKMQFLLKVR 949 (954)
Q Consensus 886 ---g~~Sv~g~G~~~P~p~~~~~~~dgv~vp~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~~YLi~~~ 949 (954)
+||||.|- .-+++|||||+.+||+|.|||.|+
T Consensus 158 ~~~~yDSvv~~--------------------------------~~~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 158 PTDLYDTVTDN--------------------------------VHHPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp TTCBCSEEESC--------------------------------SSSCSEEEECSTTCEEEEEEEEEE
T ss_pred CCCCccceeCC--------------------------------CCCCCEEEEEeCCceeeEEEEEEe
Confidence 47776642 113489999999999999999986
No 13
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=251.02 Aligned_cols=116 Identities=33% Similarity=0.548 Sum_probs=108.0
Q ss_pred cceeeeecCCcccCCCCCCCC--ccEEeecCCeeEEEEEEeecCCCCCccEEEEEEEEcCCCCcEEEEEEeeecccccCC
Q 035625 454 SMVTIKVKGRSAVHEASGMQD--TGHILEDGKSVYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIG 531 (954)
Q Consensus 454 ~~~~~~~kg~~~Vd~~s~l~~--~~hV~~d~~~~Y~~~L~~tdi~~~~N~fY~lQll~~~~~~~y~v~~~WGRVG~~~~G 531 (954)
+..++++||+++|||.+++++ .+|||+| |+|+|+++|+..|+|+||+|||++++.+. |+||++|||||+. |
T Consensus 3 ~~~~~~~k~~~~VD~~~~~~~~~~~~V~~d----y~~~L~~~d~~~n~nrfY~lQll~~~~g~-~~v~~~WGRIG~~--G 75 (124)
T 2eoc_A 3 SGSSGAEKRIIRVDPTCPLSSNPGTQVYED----YNCTLNQTNIENNNNKFYIIQLLQDSNRF-FTCWNRWGRVGEV--G 75 (124)
T ss_dssp SCCCCSCCCCCCCCSSSSTTTSTTCEEEEE----EEEEEEEEETTTTEEEEEEEEEEECTTSC-EEEEEECSCTTSC--C
T ss_pred CcccceecCCcccCCCccccccCCcEEeEe----EEEEEEeecCCCCceeEEEEEEEecCCce-EEEEEEECCCCCC--C
Confidence 346778899999999999986 8999998 99999999999999999999999988776 9999999999985 9
Q ss_pred CccccCC-CHHHHHHHHHHHHHHHhCCCccchhhcccCccCCCcceecc
Q 035625 532 GSKLEEC-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKILPTG 579 (954)
Q Consensus 532 ~~kl~~~-s~e~Ai~~F~k~F~eKTGn~W~~~~~r~~f~k~pgKy~~ve 579 (954)
+++++++ ++++|+++|+++|++||||.|+ +|.+|+|+||||++||
T Consensus 76 q~~~~~~~s~~~A~~~F~k~f~~Ktgn~w~---~r~~f~~~pgky~~~e 121 (124)
T 2eoc_A 76 QSKINHFTRLEDAKKDFEKKFREKTKNNWA---ERDHFVSHPGKYTLIE 121 (124)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHSSCST---TGGGCCCCSSSCEEEC
T ss_pred ceEeecCCCHHHHHHHHHHHHHHHHcCCcc---cccCcccCCCceeEEE
Confidence 9999988 6999999999999999999996 5789999999999999
No 14
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.94 E-value=2.2e-27 Score=223.12 Aligned_cols=91 Identities=75% Similarity=1.277 Sum_probs=85.2
Q ss_pred CCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccccccCCCCCCccCCccCCCHHHHHHH
Q 035625 4 PPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIKSLDDVEGIESLRWEDQQKI 83 (954)
Q Consensus 4 ~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~~~~~~~~~~i~G~~~L~~eDq~~i 83 (954)
.+++|.|||||||||+||+|+++|+||+||||+++++++|||.+++|||+.||+..+..+.++++|+||++|+||||++|
T Consensus 7 ~~~~y~vEYAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~~~~~~i~~~~~I~G~~~L~~eDQ~~I 86 (114)
T 1v9x_A 7 GHKPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKI 86 (114)
T ss_dssp CCCSEEEEECSCSCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHHTSSSCCSCGGGEETTTTSCHHHHHHH
T ss_pred CCcceEEEEeCCCCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccchhhccCCChHHCCChHHCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999988755578899999999999999999
Q ss_pred HHHHHhcCCCC
Q 035625 84 RKYVEEGVGSG 94 (954)
Q Consensus 84 ~~~i~~~~~~~ 94 (954)
+++|++++...
T Consensus 87 ~~~i~~~~~~~ 97 (114)
T 1v9x_A 87 RKYVESGAGSN 97 (114)
T ss_dssp HHHHSSCSSST
T ss_pred HHHHHHcCCCC
Confidence 99999987754
No 15
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.94 E-value=1.5e-27 Score=223.78 Aligned_cols=93 Identities=46% Similarity=0.843 Sum_probs=79.5
Q ss_pred CCC-CCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccccccCCC-CCCccCCccCCCHH
Q 035625 1 MAN-PPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQIK-SLDDVEGIESLRWE 78 (954)
Q Consensus 1 m~~-~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~~~~~~-~~~~i~G~~~L~~e 78 (954)
||. .+.+|.|||||||||+||+|+++|+||+||||+++++++|||.++.|||++||++.+..+. ..++|+||++|+||
T Consensus 21 m~~~~~~~y~vEyAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~~~~~~~~~~~~~I~Gfd~L~~e 100 (116)
T 3od8_A 21 MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWD 100 (116)
T ss_dssp ----CCCSEEEEECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHHHTCCCCSCHHHHEETGGGSCHH
T ss_pred hhhccCCCEEEEEeccCCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccChhhhhccCCChhhCcChHHCCHH
Confidence 454 4689999999999999999999999999999999999999999999999999999764443 24689999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 035625 79 DQQKIRKYVEEGVGS 93 (954)
Q Consensus 79 Dq~~i~~~i~~~~~~ 93 (954)
||++|+++|++++++
T Consensus 101 DQekIkk~ie~g~v~ 115 (116)
T 3od8_A 101 DQQKVKKTAEAGGVT 115 (116)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999988654
No 16
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.93 E-value=5.7e-27 Score=218.55 Aligned_cols=95 Identities=46% Similarity=0.829 Sum_probs=85.3
Q ss_pred CCC-CCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccccccCC-CCCCccCCccCCCHH
Q 035625 1 MAN-PPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRKANQI-KSLDDVEGIESLRWE 78 (954)
Q Consensus 1 m~~-~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~~~~~-~~~~~i~G~~~L~~e 78 (954)
||. .+.+|.|||||||||+||+|+++|+||+||||+++++++|+|.++.|||+.||++.+... ...++|+||++|+||
T Consensus 8 m~~~~~~~~~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~~~~~~~~~~~~~i~G~~~L~~e 87 (106)
T 2dmj_A 8 MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWD 87 (106)
T ss_dssp CCCSCCCSEECEECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHHHTTCCCSCTTTSEETTTTSCHH
T ss_pred cccCCCCeEEEEEeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccchhhccCCCChhhCCChHHCCHH
Confidence 675 478999999999999999999999999999999999999999999999999999875322 356789999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 035625 79 DQQKIRKYVEEGVGSGS 95 (954)
Q Consensus 79 Dq~~i~~~i~~~~~~~~ 95 (954)
||++|+++|+.+++++.
T Consensus 88 Dq~~i~~~~e~g~~~p~ 104 (106)
T 2dmj_A 88 DQQKVKKTAEAGGSGPS 104 (106)
T ss_dssp HHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999999887653
No 17
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=99.92 E-value=7.2e-26 Score=214.64 Aligned_cols=91 Identities=32% Similarity=0.612 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEEcccCCcccccccccccCCCeEEEEEeecccc--CCCCceeeecccccccc-------cCCCCCCccCC
Q 035625 1 MANPPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQF--DGFMPMWNHASCVLRKA-------NQIKSLDDVEG 71 (954)
Q Consensus 1 m~~~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~--dg~~~~W~H~~Cf~~~~-------~~~~~~~~i~G 71 (954)
|+. .+|.|||||||||+|++|+++|+||+||||+++++++| +|.++.|||++||+.+. ..+.++++|+|
T Consensus 1 m~~--~~y~vEYAkSgRA~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~~k~~~~r~~~~~~~~~~~i~G 78 (117)
T 1uw0_A 1 MAE--QRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEG 78 (117)
T ss_dssp CCC--CEEEEEECCSSCEECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHHHHHHHSCSSSCCSCTTSSSBS
T ss_pred CCC--CceEEEEeCCCCccchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccchhHHhhhhhhccCCCChHHCcC
Confidence 555 57999999999999999999999999999999999988 89999999999999643 12357899999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCC
Q 035625 72 IESLRWEDQQKIRKYVEEGVGS 93 (954)
Q Consensus 72 ~~~L~~eDq~~i~~~i~~~~~~ 93 (954)
|++|+|+||++|+++|++....
T Consensus 79 ~~~L~~eDQ~~I~~~i~~~~~~ 100 (117)
T 1uw0_A 79 WEELEDNEKEQITQHIADLSSK 100 (117)
T ss_dssp TTTSCHHHHHHHHHHHHHHHCC
T ss_pred hHHCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999886654
No 18
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=99.91 E-value=1.1e-25 Score=210.70 Aligned_cols=89 Identities=28% Similarity=0.512 Sum_probs=77.4
Q ss_pred CCCCcEEEEcccCCcccccccccccCCCeEEEEEeeccc--cCCCCceeeeccccccccc-----CCCCCCccCCccCCC
Q 035625 4 PPKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQ--FDGFMPMWNHASCVLRKAN-----QIKSLDDVEGIESLR 76 (954)
Q Consensus 4 ~~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~--~dg~~~~W~H~~Cf~~~~~-----~~~~~~~i~G~~~L~ 76 (954)
...+|.|||||||||+|++|+++|+||+||||+++++|+ ++|.++.|||++||+..+. ...++++|+||++|+
T Consensus 6 ~~~~y~vEyAkS~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~I~Gf~~L~ 85 (111)
T 3odc_A 6 TLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLA 85 (111)
T ss_dssp CCCCEEEEECSSSCCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHHHTHHHHTCCTTTGGGGEETGGGSC
T ss_pred cCCcceEEEeecCCccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhccchhhhcccCCCCCHHhCCChHHCC
Confidence 467899999999999999999999999999999999875 4789999999999998752 234678999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 035625 77 WEDQQKIRKYVEEGVG 92 (954)
Q Consensus 77 ~eDq~~i~~~i~~~~~ 92 (954)
||||++|+++|++...
T Consensus 86 ~eDQe~Ikk~i~~~~~ 101 (111)
T 3odc_A 86 TEDKEALKKQLPGVKS 101 (111)
T ss_dssp HHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999976543
No 19
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.6e-25 Score=212.43 Aligned_cols=110 Identities=26% Similarity=0.431 Sum_probs=88.1
Q ss_pred CCCcEEEEcccCCcccccccccccCCCeEEEEEeecc--ccCCCCceeeecccccccccC-----CCCCCccCCccCCCH
Q 035625 5 PKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSS--QFDGFMPMWNHASCVLRKANQ-----IKSLDDVEGIESLRW 77 (954)
Q Consensus 5 ~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~--~~dg~~~~W~H~~Cf~~~~~~-----~~~~~~i~G~~~L~~ 77 (954)
..+|.|||||||||+|++|+++|+||+||||++|+++ .++|.+++|||+.||+..+.+ ..++++|+||++|+|
T Consensus 15 ~~~y~vEYAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~~~~~~~~~~~~~~~~~I~Gf~~L~~ 94 (134)
T 2cs2_A 15 LGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLAT 94 (134)
T ss_dssp EEEEEEEECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHHHTTTTTTCCTTCCGGGEETTTTSCH
T ss_pred cCceEEEEeCCCCccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcChhhhhccccCCCCChHhCCChHHCCH
Confidence 3579999999999999999999999999999999875 468999999999999987632 346789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCccccccccceeecccc
Q 035625 78 EDQQKIRKYVEEGVGSGSS-SKSNVTAAEYGIEVSQTS 114 (954)
Q Consensus 78 eDq~~i~~~i~~~~~~~~~-~~~~~~~~~~~vEyAks~ 114 (954)
|||++|+++|+........ ++.....++..++.++++
T Consensus 95 eDQe~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (134)
T 2cs2_A 95 EDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPS 132 (134)
T ss_dssp HHHHHHHTTCCSSCCCCCCCCCCCCCCCCSCCCCCCCC
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCcchHhhhccCCC
Confidence 9999999999876553221 233334445666655544
No 20
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=99.82 E-value=6.1e-22 Score=206.94 Aligned_cols=84 Identities=30% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCCcEEEEcccCCcccccccccccCCCeEEEEEeeccc--cCCCCceeeecccccccccCC-----CCCCccCCccCCCH
Q 035625 5 PKPWKVEYAKSGRSSCRSCKSNIEKEALRLGKMVQSSQ--FDGFMPMWNHASCVLRKANQI-----KSLDDVEGIESLRW 77 (954)
Q Consensus 5 ~~~~~vEYAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~--~dg~~~~W~H~~Cf~~~~~~~-----~~~~~i~G~~~L~~ 77 (954)
..+|.|||||||||+||+|+++|+||+||||+++++++ ++|.++.|||++||++.+..+ .++++|+||++|+|
T Consensus 131 ~~~y~vEYAKS~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~l~Gf~~L~~ 210 (223)
T 4av1_A 131 LGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLAT 210 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceEEEEeccCCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhchhhhcccCCCCChHHCCChHHCCH
Confidence 45899999999999999999999999999999998874 578999999999999876322 36889999999999
Q ss_pred HHHHHHHHHHH
Q 035625 78 EDQQKIRKYVE 88 (954)
Q Consensus 78 eDq~~i~~~i~ 88 (954)
|||++|+++|.
T Consensus 211 eDQ~~ikk~i~ 221 (223)
T 4av1_A 211 EDKEALKKQLP 221 (223)
T ss_dssp -----------
T ss_pred HHHHHHHHhcc
Confidence 99999999985
No 21
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=192.52 Aligned_cols=118 Identities=25% Similarity=0.372 Sum_probs=95.7
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCCCCCCCCccccCceeeee-cccccchhhHHHhhcCCcceeEecCCCCChhhhhccCC
Q 035625 741 DIAPLPHDSEDYQLIEKYLHATHAPTHTDWSLELEEVFSLE-REGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGL 819 (954)
Q Consensus 741 ~i~~L~~~s~Ey~~I~~y~~~t~~~~h~~~~~~I~~If~V~-r~~e~~rf~~~k~~~~N~~lLwHGSr~~N~~gILs~Gl 819 (954)
.|..|+ -.||..|.+++...+.+ ......||+|. +.++.++|+++ ++.+|++++||||+.+||.+||++||
T Consensus 94 ~l~~l~--k~ef~~l~~~~g~~~~p-----~~~P~~If~V~~~~~~~~~f~~~-~~~~~~~~~~HGS~l~n~~sIL~~GL 165 (277)
T 4f0d_A 94 TIHSAG--KAEFEKIQKLTGAPHTP-----VPAPDFLFEIEYFDPANAKFYET-KGERDLIYAFHGSRLENFHSIIHNGL 165 (277)
T ss_dssp EEEECC--SHHHHHHHHHTCSCSSC-----CCCCSEEEEEEECTTHHHHHHHH-HTTSCEEEEEEECCGGGHHHHHHHCS
T ss_pred ceEecC--HHHHHHHHHHhCCCCCC-----CCCCceeEEEecCcchhhHHHHh-hccCCcEEEEcCCcHHHHHHHHhccc
Confidence 566665 45788888877654333 34567999999 78888999987 67789999999999999999999999
Q ss_pred CCCCCCCCCcceeeeeeeecccccccccccccCCC------CCC-ceEEEEEEEeeCc
Q 035625 820 RIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDK------KNP-VGLMLLSEVGLGE 870 (954)
Q Consensus 820 riap~~ap~tGymFGkGIYFAd~~sKSa~Yc~~~~------~~~-~~~mlLceVaLG~ 870 (954)
+++| .+|+|||+|||||+++++|++||.++. -++ .++|.||||+..-
T Consensus 166 ~~~~----~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p 219 (277)
T 4f0d_A 166 HCHL----NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHP 219 (277)
T ss_dssp CCC------CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCC
T ss_pred ccCc----ccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCC
Confidence 9975 589999999999999999999997642 122 6899999998754
No 22
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=8.3e-19 Score=164.86 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=72.1
Q ss_pred cccceeecccchhhhhhhcccccccceeecccCCCCCCCC--ccccccccccccCCC-ccccccCCCCCCCHhhHHHHHH
Q 035625 104 AEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKG--LAWHHANCFLDLSPS-TQVEKLSGWGNLTVSDQGAVKA 180 (954)
Q Consensus 104 ~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~--~~w~H~~Cf~~~~~~-~~~e~l~G~~~L~~~dq~~v~~ 180 (954)
..|.||||||+||+|++|.++|.||+|||++....+.++| ..|||+.||+..... ..+++|+||+.|+++||+.|++
T Consensus 9 ~~y~vEYAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~~~~~~i~~~~~I~G~~~L~~eDQ~~I~~ 88 (114)
T 1v9x_A 9 KPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRK 88 (114)
T ss_dssp CSEEEEECSCSCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHHTSSSCCSCGGGEETTTTSCHHHHHHHHH
T ss_pred cceEEEEeCCCCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccchhhccCCChHHCCChHHCCHHHHHHHHH
Confidence 4799999999999999999999999999999876666655 569999999965433 5789999999999999999999
Q ss_pred hcCCC
Q 035625 181 LVNVP 185 (954)
Q Consensus 181 ~~~~~ 185 (954)
++...
T Consensus 89 ~i~~~ 93 (114)
T 1v9x_A 89 YVESG 93 (114)
T ss_dssp HHSSC
T ss_pred HHHHc
Confidence 99743
No 23
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=99.74 E-value=2.1e-19 Score=168.09 Aligned_cols=87 Identities=30% Similarity=0.545 Sum_probs=71.0
Q ss_pred cccccccceeecccchhhhhhhcccccccceeecccCCCCC--CCC--cccccccccccc------CCCccccccCCCCC
Q 035625 100 NVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQG--TKG--LAWHHANCFLDL------SPSTQVEKLSGWGN 169 (954)
Q Consensus 100 ~~~~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~--~~~--~~w~H~~Cf~~~------~~~~~~e~l~G~~~ 169 (954)
..++.+|.||||+||||+|++|.++|.||+|||++....+. .+| ..|||+.||+.. .+..++++|+||+.
T Consensus 4 ~~~~~~y~vEyAkS~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~I~Gf~~ 83 (111)
T 3odc_A 4 EKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSL 83 (111)
T ss_dssp --CCCCEEEEECSSSCCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHHHTHHHHTCCTTTGGGGEETGGG
T ss_pred cccCCcceEEEeecCCccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhccchhhhcccCCCCCHHhCCChHH
Confidence 45788999999999999999999999999999999643322 223 569999999953 34457899999999
Q ss_pred CCHhhHHHHHHhcCCCC
Q 035625 170 LTVSDQGAVKALVNVPS 186 (954)
Q Consensus 170 L~~~dq~~v~~~~~~~~ 186 (954)
|+++||+.|++++++.+
T Consensus 84 L~~eDQe~Ikk~i~~~~ 100 (111)
T 3odc_A 84 LATEDKEALKKQLPGVK 100 (111)
T ss_dssp SCHHHHHHHHHHSCC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999997543
No 24
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=166.60 Aligned_cols=90 Identities=31% Similarity=0.554 Sum_probs=75.3
Q ss_pred CCccccccccceeecccchhhhhhhcccccccceeecccCCC--CCCCC--ccccccccccccC------CCccccccCC
Q 035625 97 SKSNVTAAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDG--QGTKG--LAWHHANCFLDLS------PSTQVEKLSG 166 (954)
Q Consensus 97 ~~~~~~~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~--~~~~~--~~w~H~~Cf~~~~------~~~~~e~l~G 166 (954)
..+++++.+|.||||+|+||+|++|.++|.||+|||++.... ..+.+ ..|||+.||+... +..++++|+|
T Consensus 9 ~~~~~~~~~y~vEYAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~~~~~~~~~~~~~~~~~I~G 88 (134)
T 2cs2_A 9 SKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKG 88 (134)
T ss_dssp CCCSSCEEEEEEEECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHHHTTTTTTCCTTCCGGGEET
T ss_pred cccccccCceEEEEeCCCCccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcChhhhhccccCCCCChHhCCC
Confidence 356778889999999999999999999999999999996432 22334 5699999998542 3457899999
Q ss_pred CCCCCHhhHHHHHHhcCCCC
Q 035625 167 WGNLTVSDQGAVKALVNVPS 186 (954)
Q Consensus 167 ~~~L~~~dq~~v~~~~~~~~ 186 (954)
|+.|+++||+.|+++|+..+
T Consensus 89 f~~L~~eDQe~I~~~i~~~~ 108 (134)
T 2cs2_A 89 FSLLATEDKEALKKQLPGVK 108 (134)
T ss_dssp TTTSCHHHHHHHHTTCCSSC
T ss_pred hHHCCHHHHHHHHHHHHHHh
Confidence 99999999999999998654
No 25
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=160.91 Aligned_cols=81 Identities=27% Similarity=0.502 Sum_probs=69.7
Q ss_pred ccccceeecccchhhhhhhcccccccceeecccCCCCCCCC--cccccccccccc--CCCccccccCCCCCCCHhhHHHH
Q 035625 103 AAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKG--LAWHHANCFLDL--SPSTQVEKLSGWGNLTVSDQGAV 178 (954)
Q Consensus 103 ~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~--~~w~H~~Cf~~~--~~~~~~e~l~G~~~L~~~dq~~v 178 (954)
...|.||||+||||+|++|.++|.||+|||++....+.+++ ..|||+.||++. ......++|+||+.|+++||+.|
T Consensus 13 ~~~~~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~~~~~~~~~~~~~i~G~~~L~~eDq~~i 92 (106)
T 2dmj_A 13 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKV 92 (106)
T ss_dssp CCSEECEECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHHHTTCCCSCTTTSEETTTTSCHHHHHHH
T ss_pred CCeEEEEEeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccchhhccCCCChhhCCChHHCCHHHHHHH
Confidence 34799999999999999999999999999999765555655 569999999853 22346788999999999999999
Q ss_pred HHhcC
Q 035625 179 KALVN 183 (954)
Q Consensus 179 ~~~~~ 183 (954)
++++.
T Consensus 93 ~~~~e 97 (106)
T 2dmj_A 93 KKTAE 97 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 26
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=99.71 E-value=2.3e-18 Score=163.23 Aligned_cols=81 Identities=21% Similarity=0.529 Sum_probs=68.8
Q ss_pred cccceeecccchhhhhhhcccccccceeecccCCCCCC--CC--ccccccccccc----cCC----CccccccCCCCCCC
Q 035625 104 AEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGT--KG--LAWHHANCFLD----LSP----STQVEKLSGWGNLT 171 (954)
Q Consensus 104 ~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~--~~--~~w~H~~Cf~~----~~~----~~~~e~l~G~~~L~ 171 (954)
.+|.||||+||||+|++|+++|.||+|||++....+.+ +| ..|||+.||.. .+. ..++++|+||+.|+
T Consensus 4 ~~y~vEYAkSgRA~Ck~C~~kI~KgeLRiG~~v~~~~~~~~g~~~~W~H~~Cf~~k~~~~r~~~~~~~~~~~i~G~~~L~ 83 (117)
T 1uw0_A 4 QRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELE 83 (117)
T ss_dssp CEEEEEECCSSCEECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHHHHHHHSCSSSCCSCTTSSSBSTTTSC
T ss_pred CceEEEEeCCCCccchhhCcccCCCCeEEEEEeccccccCCCCCCeeECcccchhHHhhhhhhccCCCChHHCcChHHCC
Confidence 46999999999999999999999999999997655544 34 56999999983 222 24689999999999
Q ss_pred HhhHHHHHHhcCC
Q 035625 172 VSDQGAVKALVNV 184 (954)
Q Consensus 172 ~~dq~~v~~~~~~ 184 (954)
++||+.|+++++.
T Consensus 84 ~eDQ~~I~~~i~~ 96 (117)
T 1uw0_A 84 DNEKEQITQHIAD 96 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999963
No 27
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.71 E-value=1.1e-18 Score=163.62 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=70.3
Q ss_pred ccccceeecccchhhhhhhcccccccceeecccCCCCCCCC--ccccccccccccCCC--ccccccCCCCCCCHhhHHHH
Q 035625 103 AAEYGIEVSQTSRATCRHCSKKIMKGEVRISAKPDGQGTKG--LAWHHANCFLDLSPS--TQVEKLSGWGNLTVSDQGAV 178 (954)
Q Consensus 103 ~~~~~vEyAks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~--~~w~H~~Cf~~~~~~--~~~e~l~G~~~L~~~dq~~v 178 (954)
..+|.||||+||||+|++|.++|.||+|||++....+.++| ..|||+.||.+.... ...++|+||+.|+++||+.|
T Consensus 26 ~~~y~vEyAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~~~~~~~~~~~~~I~Gfd~L~~eDQekI 105 (116)
T 3od8_A 26 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKV 105 (116)
T ss_dssp CCSEEEEECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHHHTCCCCSCHHHHEETGGGSCHHHHHHH
T ss_pred CCCEEEEEeccCCccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccChhhhhccCCChhhCcChHHCCHHHHHHH
Confidence 35799999999999999999999999999999876666666 569999999975432 34688999999999999999
Q ss_pred HHhcC
Q 035625 179 KALVN 183 (954)
Q Consensus 179 ~~~~~ 183 (954)
++++.
T Consensus 106 kk~ie 110 (116)
T 3od8_A 106 KKTAE 110 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 28
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.17 E-value=3.7e-11 Score=112.20 Aligned_cols=84 Identities=23% Similarity=0.376 Sum_probs=72.9
Q ss_pred CCCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 364 SKSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 364 ~~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
...+||.|+.|++.|.++..+++|+++|+. +..|||||++.+....+.++++|++.||+||+++||.+|+.
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~ 90 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQ 90 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHH
Confidence 356899999999999998888999999998 46699999966444567899999999999999999999999
Q ss_pred cCCCCCCCccccc
Q 035625 435 RQKKLPFDLYKVE 447 (954)
Q Consensus 435 ~~~~~~~~~y~l~ 447 (954)
.++.+|+.+|.+.
T Consensus 91 ~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 91 ECKHLPESLYPHT 103 (107)
T ss_dssp HTSCCCGGGCCTT
T ss_pred hCCCCchhhCCCC
Confidence 9999999999874
No 29
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.8e-09 Score=104.27 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
..++|.|+.|++.|.+...+++|+++|+. +..|||||++. ..+.++++|++++|+||+++||.+|+..
T Consensus 19 ~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~---~~~~K~~~A~~~gi~IV~~~Wl~d~~~~ 95 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAF---ANTPKYSQVLGLGGRIVRKEWVLDCHRM 95 (129)
T ss_dssp HTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESS---SSCHHHHHHHHHTCEEEETHHHHHHHHT
T ss_pred ccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecC---CCChHHHHHHHCCCcEecHHHHHHHHHh
Confidence 46789999999999998788999999998 45699999984 3467899999999999999999999999
Q ss_pred CCCCCCCcccccc
Q 035625 436 QKKLPFDLYKVEV 448 (954)
Q Consensus 436 ~~~~~~~~y~l~~ 448 (954)
++.+++..|.+..
T Consensus 96 ~~~l~e~~Y~l~~ 108 (129)
T 2d8m_A 96 RRRLPSQRYLMAG 108 (129)
T ss_dssp TSCCCGGGGBCSS
T ss_pred CCcCChHhcccCC
Confidence 9999999999863
No 30
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.87 E-value=1.5e-09 Score=102.16 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHH
Q 035625 362 QSSKSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDC 432 (954)
Q Consensus 362 ~~~~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~ 432 (954)
.+|..+||.|++|++.|+|..++++++++|+. ++.|+|||++++..+.+.++++|+++|||||+++||.++
T Consensus 4 ~~p~~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~ 83 (113)
T 2cok_A 4 GSSGDKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDV 83 (113)
T ss_dssp CCCCCCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHH
T ss_pred CCCCCCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHH
Confidence 44557899999999999998899999999998 466889999832124568999999999999999997777
Q ss_pred hhcC
Q 035625 433 FKRQ 436 (954)
Q Consensus 433 ~~~~ 436 (954)
..++
T Consensus 84 ~~~~ 87 (113)
T 2cok_A 84 SAST 87 (113)
T ss_dssp HSCC
T ss_pred Hhhc
Confidence 6554
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.85 E-value=7.4e-10 Score=104.19 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
.-+||.|++|+++|-.+..+.+++++|+. +..+||||+++...+ +.+.|.+.+|+||+.|||+||++.
T Consensus 18 ~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~---K~~~A~~~~i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK---DLPFEPSKKLYVVKQEWFWGSIQM 94 (112)
T ss_dssp CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS---SCSSCCCSSCEEEEHHHHHHHHHH
T ss_pred CCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh---hHHHHHHCCeeEecHHHHHHHHHc
Confidence 45799999999999444567889999998 456999999986643 445666789999999999999999
Q ss_pred CCCCCCCccccc
Q 035625 436 QKKLPFDLYKVE 447 (954)
Q Consensus 436 ~~~~~~~~y~l~ 447 (954)
+..++|+.|.+.
T Consensus 95 g~~ldE~~Y~~~ 106 (112)
T 3l46_A 95 DARAGETMYLYE 106 (112)
T ss_dssp TSCCCGGGSBCC
T ss_pred CCccChhhceec
Confidence 999999999985
No 32
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.71 E-value=2.7e-08 Score=90.76 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCCCCCCcEEEEEeCCCcchhHHHHHhhh---------c-CCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHH
Q 035625 363 SSKSENLGDLRVSFSRLPKESKCVSCCLINE---------S-AETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDC 432 (954)
Q Consensus 363 ~~~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~-~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~ 432 (954)
....+.|.|+.|+++|......++|+++|.. + ..+||||++.... .+++.++ +++||+.+||.||
T Consensus 7 ~~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~---~k~~~~~--~~~iV~p~Wl~dc 81 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPN---AKIKELK--GEKVIRPEWIVES 81 (97)
T ss_dssp SCCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCT---THHHHTS--SSCCBCTHHHHHH
T ss_pred CCCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCCh---HHHHHhc--CCCEeChHHHHHH
Confidence 3456899999999999877778999999988 2 4689999987542 3444444 9999999999999
Q ss_pred hhcCCCCCCCccccc
Q 035625 433 FKRQKKLPFDLYKVE 447 (954)
Q Consensus 433 ~~~~~~~~~~~y~l~ 447 (954)
++.++.+|+.+|.+.
T Consensus 82 i~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 82 IKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHTSCCCSGGGBSC
T ss_pred HHcCCccCchHcEec
Confidence 999999999999863
No 33
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.70 E-value=3e-08 Score=89.22 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh---------c--CCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE---------S--AETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~--~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
..+|+|++|+++|....+.++++.+|+. + ..+||||++.... .+ .++..+++||+++||.||++
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~---~K--~~~~~~~~iV~~~Wi~dci~ 79 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL---KK--RIEFANYKVVSPDWIVDSVK 79 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH---HH--HHHTTTSCEECTHHHHHHHH
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH---HH--HHHcCCCCEEcccHHHHHHH
Confidence 4789999999999655678899999988 3 5799999987543 22 22336999999999999999
Q ss_pred cCCCCCCCcccc
Q 035625 435 RQKKLPFDLYKV 446 (954)
Q Consensus 435 ~~~~~~~~~y~l 446 (954)
.++.+|+++|.|
T Consensus 80 ~~~~l~e~~Y~l 91 (92)
T 4id3_A 80 EARLLPWQNYSL 91 (92)
T ss_dssp HTSCCCGGGGBC
T ss_pred cCCcCChhhccc
Confidence 999999999987
No 34
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=1.4e-08 Score=95.06 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=67.2
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
.-++|.|++|+++|-....+.+|+++|+. +..+||||++..+. .+.+.|.+.+|+||+.+||+||++.
T Consensus 9 ~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~---~K~~~a~~~~i~IV~~~Wl~dsi~~ 85 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTV---KDLPFEPSKKLFVVKQEWFWGSIQM 85 (109)
T ss_dssp CCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTC---SSCSSCCCTTSEEECHHHHHHHHHT
T ss_pred cCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCcc---HHHHHHHHCCCeEecHHHHHHHHHc
Confidence 45799999999999544567889998887 45699999987554 3355666789999999999999999
Q ss_pred CCCCCCCcccccc
Q 035625 436 QKKLPFDLYKVEV 448 (954)
Q Consensus 436 ~~~~~~~~y~l~~ 448 (954)
+..++|..|.+..
T Consensus 86 g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 86 DARAGETMYLYEK 98 (109)
T ss_dssp TSCCCGGGTBCCC
T ss_pred CCcCChhccCCCC
Confidence 9999999998853
No 35
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.45 E-value=1.8e-07 Score=102.66 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------c-CCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------S-AETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~-~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
..++|.|+.|++.|.+...+++++.+|+. + ..|||||+++.. +.+.++|++.|||||+++||.||+.
T Consensus 196 ~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~---g~K~~~A~~~gi~IV~~~Wl~dsi~ 272 (298)
T 3olc_X 196 KCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPK---GQKYECAKRWNVHCVTTQWFFDSIE 272 (298)
T ss_dssp BCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSC---SHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred cccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCC---chHHHHHHHCCCeEEeHHHHHHHHH
Confidence 35799999999999887788999999998 3 569999998763 6789999999999999999999999
Q ss_pred cCCCCCCCccccc
Q 035625 435 RQKKLPFDLYKVE 447 (954)
Q Consensus 435 ~~~~~~~~~y~l~ 447 (954)
.+..++++.|.+.
T Consensus 273 ~g~~lde~~Y~l~ 285 (298)
T 3olc_X 273 KGFCQDESIYKTE 285 (298)
T ss_dssp HTSCCCGGGSBSC
T ss_pred CCCCCCchhcCCC
Confidence 9999999999985
No 36
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.39 E-value=6e-07 Score=83.72 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEEeCCCc----chhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHH
Q 035625 366 SENLGDLRVSFSRLPKE----SKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDC 432 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~----~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~ 432 (954)
.++|+|+.|.+.+.... ..+.+..++.. +.+|||||+.... ..+.++|++.+|+||+.+||++|
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~---~~~~~~A~~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGY---QSTWDKAQKRGVKLVSVLWVEKC 81 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCC---HHHHHHHHHHTCEEECHHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCC---ChHHHHHhcCCCEEECHHHHHHH
Confidence 47899999999888742 23567777766 4679999997643 45678888889999999999999
Q ss_pred hhcCCCCCCCccccccc
Q 035625 433 FKRQKKLPFDLYKVEVV 449 (954)
Q Consensus 433 ~~~~~~~~~~~y~l~~~ 449 (954)
++.++.+++.+|.+...
T Consensus 82 ~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHTSCCCGGGSBCCCT
T ss_pred HHhCccCChhcccCCCC
Confidence 99999999999988533
No 37
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.34 E-value=3.7e-07 Score=82.81 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=59.3
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
..+||.|+.|++.|.|..++++++++|+. +..|+|||+.+. .+.|+++|+++|||||+++|+.+++..
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~---~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGEN---PGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSS---SSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCC---CChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 35789999999999998899999999998 466889999864 468899999999999999988888764
No 38
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.30 E-value=6.7e-07 Score=102.41 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=68.4
Q ss_pred CCCCCCcEEEEEeCCCc----chhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhc-CCCeechhhHHH
Q 035625 366 SENLGDLRVSFSRLPKE----SKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKM-KVPIVREDYLVD 431 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~----~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~-~i~IVs~dwL~d 431 (954)
.++|.|++|+++|.++. ...++..+|+. +..|||||++.. .+.|+++|+++ +|+||+++||.+
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~---~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI---RTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSC---CCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCC---CCHHHHHHHhcCCCEEEeHHHHHH
Confidence 57999999999999954 34789999988 467999999853 56899999998 699999999999
Q ss_pred HhhcCCCCCCCcccc
Q 035625 432 CFKRQKKLPFDLYKV 446 (954)
Q Consensus 432 ~~~~~~~~~~~~y~l 446 (954)
|+..++.+++..|.+
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999976
No 39
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.29 E-value=9.5e-07 Score=99.71 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=67.8
Q ss_pred CCCCCCcEEEEEeCCCc----chhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhc-CCCeechhhHHH
Q 035625 366 SENLGDLRVSFSRLPKE----SKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKM-KVPIVREDYLVD 431 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~----~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~-~i~IVs~dwL~d 431 (954)
.++|.|++|+++|.++. .+.+++.+|+. +.+|||||++.. .+.|+++|++. ||+||+++||++
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~---~t~K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI---RTEKVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSC---CCHHHHHHHHSSSCCEEEHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCC---CchHHHHHHhcCCCEEEcHHHHHH
Confidence 58999999999999853 24789999888 467999999853 46889999998 899999999999
Q ss_pred HhhcCCCCCCCcccc
Q 035625 432 CFKRQKKLPFDLYKV 446 (954)
Q Consensus 432 ~~~~~~~~~~~~y~l 446 (954)
|+..++.+++..|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999976
No 40
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.23 E-value=2.2e-06 Score=80.08 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCCCCcEEEEEeCCC-cchhHHHHHhhh---------cCCeeEEecCCCCCCCC-hHHHHHHhcCCCeechhhHHHHhh
Q 035625 366 SENLGDLRVSFSRLPK-ESKCVSCCLINE---------SAETNCLVLGGVPDDPD-AEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~-~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~-~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
..||.|+.|++.|.|. .++++++++|+. ++.|++||+.++. + .++++|+++|||||+++|+.+.+.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~---g~sK~~kA~~lgI~Ii~E~~f~~ll~ 106 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS---GQSKSDKAAALGTKIIDEDGLLNLIR 106 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCC---CHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCC---ChHHHHHHHHcCCeEEeHHHHHHHHH
Confidence 4689999999999995 589999999998 4668899998643 4 789999999999999999999876
Q ss_pred c
Q 035625 435 R 435 (954)
Q Consensus 435 ~ 435 (954)
.
T Consensus 107 ~ 107 (109)
T 2k6g_A 107 N 107 (109)
T ss_dssp H
T ss_pred h
Confidence 4
No 41
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=5e-06 Score=77.97 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCCCCcEEEEEeCCC-cchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 366 SENLGDLRVSFSRLPK-ESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~-~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
..||.|+.|++.|.|. .++++++++|+. ++.|++||+.+.. ...++++|+++||+||+++|+.+.+..
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~--g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS--GQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSC--CSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCC--ChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 4689999999999996 589999999998 4668899998643 237999999999999999999999875
Q ss_pred C
Q 035625 436 Q 436 (954)
Q Consensus 436 ~ 436 (954)
.
T Consensus 98 ~ 98 (112)
T 2ebu_A 98 M 98 (112)
T ss_dssp S
T ss_pred C
Confidence 3
No 42
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=98.17 E-value=4.1e-06 Score=80.91 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHh---cCCCeechhhHHHH
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARK---MKVPIVREDYLVDC 432 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~---~~i~IVs~dwL~d~ 432 (954)
+...|+|++|.+.|......+.|+.+|.. ...|||||+... ..+++++.+ .+++||+.+||.||
T Consensus 37 ~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~----~~~~~~~~~~~~~~~~iV~~~Wv~ds 112 (132)
T 1wf6_A 37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY----DDELKQFWNKSAHRPHVVGAKWLLEC 112 (132)
T ss_dssp CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC----CSHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred cccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc----hHHHHHHHHhhCCCCeEechHHHHHH
Confidence 35789999999999876667888888887 356999999752 334554432 48999999999999
Q ss_pred hhcCCCCCCCccccc
Q 035625 433 FKRQKKLPFDLYKVE 447 (954)
Q Consensus 433 ~~~~~~~~~~~y~l~ 447 (954)
++.++.+++..|.+.
T Consensus 113 i~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 113 FSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHSSCCCSGGGBCC
T ss_pred HHcCCcCCHhhccCC
Confidence 999999999999764
No 43
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.14 E-value=5e-06 Score=77.01 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEeCCC-cchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhc--CCCeechhhHHHHhh
Q 035625 367 ENLGDLRVSFSRLPK-ESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKM--KVPIVREDYLVDCFK 434 (954)
Q Consensus 367 ~pl~~~~i~i~G~~~-~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~--~i~IVs~dwL~d~~~ 434 (954)
.-|.|++|.+.|.++ .....+..+|.. +..|||+|++.. ...+++.|.+. ++.+|+.+||.+|+.
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~---~d~~~~~a~~~~p~~~~V~P~WI~~Ci~ 82 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQE---WDPNFEEALMENPSLAFVRPRWIYSCNE 82 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSC---CCHHHHHHHTTCTTCEEECHHHHHHHHH
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCC---CChhHHHHhhhCCCCeEEccHHHHHHHh
Confidence 468999999999994 456678888876 567999999875 44567777653 899999999999999
Q ss_pred cCCCCCCCcccccc
Q 035625 435 RQKKLPFDLYKVEV 448 (954)
Q Consensus 435 ~~~~~~~~~y~l~~ 448 (954)
+++.+|+++|.+.+
T Consensus 83 ~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 83 KQKLLPHQLYGVVP 96 (104)
T ss_dssp HTSCCCGGGGBCCC
T ss_pred cCccCCcccceecc
Confidence 99999999998864
No 44
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.03 E-value=3.9e-06 Score=88.09 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh--------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCC
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE--------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQK 437 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~--------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~ 437 (954)
-.|+.+++|+++|-.+...++++++|+. ..++||||++. ..+..+...|.+.|+|||+.+||.+|++.+.
T Consensus 11 ~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~--~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~ 88 (219)
T 3sqd_A 11 LTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASK--VTRTVKFLTAISVVKHIVTPEWLEECFRCQK 88 (219)
T ss_dssp CCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSGGGCSEEECSS--CCCCHHHHHHTTTCSEEECHHHHHHHHHHTS
T ss_pred cCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCCCCceEEEECC--CCCCHHHHHHHHcCCCEecHHHHHHHHHcCC
Confidence 3589999999999544456778888887 34589999986 4456678888889999999999999999999
Q ss_pred CCCCCccccc
Q 035625 438 KLPFDLYKVE 447 (954)
Q Consensus 438 ~~~~~~y~l~ 447 (954)
.+++.+|.+.
T Consensus 89 ~l~e~~y~l~ 98 (219)
T 3sqd_A 89 FIDEQNYILR 98 (219)
T ss_dssp CCCSGGGBCC
T ss_pred CCChHhccCC
Confidence 9999999885
No 45
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.03 E-value=9.7e-06 Score=86.31 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=65.6
Q ss_pred CCCCcEEEEEeC--C-CcchhHHHHHhhhc-----C------------------------------CeeEEecCCCCCCC
Q 035625 368 NLGDLRVSFSRL--P-KESKCVSCCLINES-----A------------------------------ETNCLVLGGVPDDP 409 (954)
Q Consensus 368 pl~~~~i~i~G~--~-~~~~~~~k~~I~~~-----~------------------------------~~thlI~t~~e~~~ 409 (954)
.|.||.|+++|. + +..+++|+++|+.. . +.||||++.. .+
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~--~r 79 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTF--SR 79 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSC--CC
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCC--CC
Confidence 689999999999 4 45789999999982 1 1389999874 35
Q ss_pred ChHHHHHHhcCCCeechhhHHHHhhcCCCCCCCccccc
Q 035625 410 DAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVE 447 (954)
Q Consensus 410 ~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~~~~y~l~ 447 (954)
..+...|.+.|||||+.+||.||++.++.+++.+|+|.
T Consensus 80 t~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~ 117 (241)
T 2vxb_A 80 KVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLA 117 (241)
T ss_dssp CHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBE
T ss_pred cHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCC
Confidence 66777888899999999999999999999999999985
No 46
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.02 E-value=7.3e-06 Score=86.02 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=68.5
Q ss_pred CCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCC---CCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 367 ENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPD---DPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 367 ~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~---~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
..++++.|+++|-....++.+.++++. +..|||||+...+. .+..++..|.+.|++||+.+||.+|++
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~ 82 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQ 82 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHT
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHH
Confidence 567899999999765556778888877 35699999987542 466788888889999999999999999
Q ss_pred cCCCCCCCcccccc
Q 035625 435 RQKKLPFDLYKVEV 448 (954)
Q Consensus 435 ~~~~~~~~~y~l~~ 448 (954)
.++.+++.+|.+..
T Consensus 83 ~~~~~~e~~y~~~~ 96 (229)
T 1l0b_A 83 ERKLLSVHEFEVKG 96 (229)
T ss_dssp TTSCCCSGGGBCCE
T ss_pred CCCcCChHHeEecc
Confidence 99999999998853
No 47
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.92 E-value=1.1e-05 Score=83.64 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=65.6
Q ss_pred CcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCCCC
Q 035625 371 DLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPF 441 (954)
Q Consensus 371 ~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~~ 441 (954)
++.|+++|-....++.+.++++. +..|||||+...+..+..+...|.+.|++||+.+||.+|++.++.+++
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~e 81 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQE 81 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCCG
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCCh
Confidence 68899999766666778888877 357999999876666777777888899999999999999999999999
Q ss_pred Cccccc
Q 035625 442 DLYKVE 447 (954)
Q Consensus 442 ~~y~l~ 447 (954)
.+|.+.
T Consensus 82 ~~y~~~ 87 (210)
T 2nte_A 82 EKYEIP 87 (210)
T ss_dssp GGTBCT
T ss_pred hhccCC
Confidence 999885
No 48
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.92 E-value=1.2e-05 Score=83.13 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCC---CCChHHHHHHhcCCCeechhhHHHHhhcCC
Q 035625 370 GDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPD---DPDAEMRKARKMKVPIVREDYLVDCFKRQK 437 (954)
Q Consensus 370 ~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~---~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~ 437 (954)
+++.|+++|-....++.+.++|+. +..|||||+...+. .+..+...|.+.|++||+.+||.+|++.++
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~~ 82 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERK 82 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTS
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCCC
Confidence 478999999766667778888877 46799999987542 456777788889999999999999999999
Q ss_pred CCCCCccccc
Q 035625 438 KLPFDLYKVE 447 (954)
Q Consensus 438 ~~~~~~y~l~ 447 (954)
.+++.+|.+.
T Consensus 83 ~~~e~~y~~~ 92 (214)
T 1t15_A 83 MLNEHDFEVR 92 (214)
T ss_dssp CCCGGGGBCC
T ss_pred cCChHHeEee
Confidence 9999999885
No 49
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.86 E-value=1.8e-05 Score=83.86 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh-----------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE-----------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~-----------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
++..++++|+++|-.+..+.++++.|+. +..|||||+... .+..|+-.|.+.|+.||+.+||.+|.+
T Consensus 4 ~~~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~--~RT~K~l~aia~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 4 GSLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHP--LRNEKYLASVAAGKWVLHRSYLEACRT 81 (235)
T ss_dssp ----CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSC--CCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred CcCCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCC--CCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence 4566899999999776556778888777 256999999864 457788888889999999999999999
Q ss_pred cCCCCCCCcccccc
Q 035625 435 RQKKLPFDLYKVEV 448 (954)
Q Consensus 435 ~~~~~~~~~y~l~~ 448 (954)
.++.+++.+|.|..
T Consensus 82 ~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 82 AGHFVQEEDYEWGS 95 (235)
T ss_dssp HTSCCCSGGGBTTS
T ss_pred cCCCCChhceeecC
Confidence 99999999999863
No 50
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.85 E-value=2.7e-05 Score=83.71 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEEeCCCc-----------------------------chhHHHHHhhhcCC---------------eeEEe
Q 035625 366 SENLGDLRVSFSRLPKE-----------------------------SKCVSCCLINESAE---------------TNCLV 401 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~-----------------------------~~~~~k~~I~~~~~---------------~thlI 401 (954)
.+.|.||.|++.|.... .+++|+++|+..++ +||||
T Consensus 13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LI 92 (259)
T 1kzy_C 13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLI 92 (259)
T ss_dssp TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEE
T ss_pred CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEE
Confidence 57899999999998653 45789999998332 46899
Q ss_pred cCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCCCCCccccc
Q 035625 402 LGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKVE 447 (954)
Q Consensus 402 ~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~~~~y~l~ 447 (954)
++.. .+..|...|.+.|+|||+.+||.||++.++.+++.+|.|.
T Consensus 93 a~~~--~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 93 ADQH--CRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp ESSC--CCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred cCCC--CCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 8773 3556677777789999999999999999999999999985
No 51
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.76 E-value=3.5e-05 Score=80.05 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCCCCCCcEEEEEeCCCcchhHHHHHhhh--------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcC
Q 035625 365 KSENLGDLRVSFSRLPKESKCVSCCLINE--------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQ 436 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~~~~~k~~I~~--------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~ 436 (954)
+.+++.+++|+++|-.. +++++.|+. ..++||||+.. ..+..++..|.+.|++||+.+||.+|++.+
T Consensus 6 ~~~~~~~~~v~~sG~~~---~~~~~~i~~lGg~~~~~~~~~THlI~~~--~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~ 80 (209)
T 2etx_A 6 LNQESTAPKVLFTGVVD---ARGERAVLALGGSLAGSAAEASHLVTDR--IRRTVKFLCALGRGIPILSLDWLHQSRKAG 80 (209)
T ss_dssp ------CCEEEECSSCC---HHHHHHHHHTTCEECSSTTTCSEEECSS--CCCSHHHHHHHHHTCCEECTHHHHHHHHHT
T ss_pred ccccCCCcEEEEeCCCc---HHHHHHHHHCCCEEeCCCCCceEEEECC--CCCCHHHHHHHhcCCccccHHHHHHHHHcC
Confidence 35778999999999763 345777776 23599999974 446778888989999999999999999999
Q ss_pred CCCCCCccccc
Q 035625 437 KKLPFDLYKVE 447 (954)
Q Consensus 437 ~~~~~~~y~l~ 447 (954)
..+++.+|.+.
T Consensus 81 ~~l~e~~y~~~ 91 (209)
T 2etx_A 81 FFLPPDEYVVT 91 (209)
T ss_dssp SCCCSGGGBCC
T ss_pred CCCChhhcccc
Confidence 99999999885
No 52
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=97.64 E-value=0.0001 Score=79.30 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=63.2
Q ss_pred CCCCCCCCcEEEE-EeCCCcchhHHHHHhhhc---------CCeeEEecCCCCCCCChHHHHHHhcC-CCeechhhHHHH
Q 035625 364 SKSENLGDLRVSF-SRLPKESKCVSCCLINES---------AETNCLVLGGVPDDPDAEMRKARKMK-VPIVREDYLVDC 432 (954)
Q Consensus 364 ~~~~pl~~~~i~i-~G~~~~~~~~~k~~I~~~---------~~~thlI~t~~e~~~~~~vk~a~~~~-i~IVs~dwL~d~ 432 (954)
+..+.|.|+.|++ .|....++++|.++|... ..+||+|+.. ...+++.+.+.| ++||+.+||.||
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~----~~~k~~~~~~~g~~~IV~p~Wv~Dc 81 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS----ENIRVKNIILSNKHDVVKPAWLLEC 81 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS----CCHHHHHHHHSCSCCEECHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC----CCHHHHHHHhcCCCCEeehHHHHHH
Confidence 4568999999988 576667889999999983 2356777753 236778888876 999999999999
Q ss_pred hhcCCCCCCCccccc
Q 035625 433 FKRQKKLPFDLYKVE 447 (954)
Q Consensus 433 ~~~~~~~~~~~y~l~ 447 (954)
++.+..+|+.+|.+-
T Consensus 82 i~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 82 FKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHTSCCCCCGGGEE
T ss_pred HhcCCcCCCCHHHHh
Confidence 999999999988653
No 53
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.62 E-value=8.6e-05 Score=76.66 Aligned_cols=76 Identities=8% Similarity=0.106 Sum_probs=64.0
Q ss_pred CcEEEEEeCCCcchhHHHHHhhh----------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCCC
Q 035625 371 DLRVSFSRLPKESKCVSCCLINE----------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKLP 440 (954)
Q Consensus 371 ~~~i~i~G~~~~~~~~~k~~I~~----------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~ 440 (954)
...|+++|-....++.+.+.|.. +..|||||+... .+..++..|.+.|++||+.+||.+|++.++.++
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~--~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~ 88 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKP--LRTLNVLLGIARGCWVLSYDWVLWSLELGHWIS 88 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSC--CCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCC--CCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCC
Confidence 56778888777777788888887 345899999654 567888889999999999999999999999999
Q ss_pred CCcccccc
Q 035625 441 FDLYKVEV 448 (954)
Q Consensus 441 ~~~y~l~~ 448 (954)
+.+|.+..
T Consensus 89 e~~y~~~~ 96 (199)
T 3u3z_A 89 EEPFELSH 96 (199)
T ss_dssp SGGGBCTT
T ss_pred hhhccccC
Confidence 99998853
No 54
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=97.59 E-value=7e-05 Score=82.15 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcC
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQ 436 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~ 436 (954)
..+|.|+.|+++|-....++++.++|+. +.+|||||+... .+.+.+.|.+.|||||+++||.+|...+
T Consensus 103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~---~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~ 179 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEV---GSKKYLVAANLKKPILLPSWIKTLWEKS 179 (298)
T ss_dssp CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSS---CSHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCC---CChHHHHHHHCCCeEeeHHHHHHHHHcC
Confidence 5789999999999987778899999988 456899999864 4678899999999999999999999877
Q ss_pred CCCCC
Q 035625 437 KKLPF 441 (954)
Q Consensus 437 ~~~~~ 441 (954)
...+.
T Consensus 180 ~~~~~ 184 (298)
T 3olc_X 180 QEKKI 184 (298)
T ss_dssp HTTCC
T ss_pred CcCCc
Confidence 65443
No 55
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=97.14 E-value=0.00043 Score=72.57 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCCcEEEEEeCCCcchhHHHHHhhh--------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCC
Q 035625 368 NLGDLRVSFSRLPKESKCVSCCLINE--------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKL 439 (954)
Q Consensus 368 pl~~~~i~i~G~~~~~~~~~k~~I~~--------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~ 439 (954)
.-++.+|+++|-.... .++.|+. ..++||||+.. ..+..++..|.+.|++||+.+||.+|++.+..+
T Consensus 5 ~~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~~~THlV~~~--~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l 79 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP---SIDNLKKLDMSITSNPSKCTHLIAPR--ILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIV 79 (220)
T ss_dssp --CCEEEEECSCSSCC---CCGGGGGGTEEECSCTTTCSEEECSS--CCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCC
T ss_pred ccceEEEEEeccCCCC---CcchHhhcceeeccCchhhhhhhhhh--HhhhcceeecCCCCCeEEEhHHHHhhhhhhhcc
Confidence 3457788888865432 2455554 34589999975 457788889999999999999999999999999
Q ss_pred CCCccccc
Q 035625 440 PFDLYKVE 447 (954)
Q Consensus 440 ~~~~y~l~ 447 (954)
++.+|.|.
T Consensus 80 ~e~~y~l~ 87 (220)
T 3l41_A 80 DEEPYLLN 87 (220)
T ss_dssp CSGGGBCC
T ss_pred ccCccccC
Confidence 99999885
No 56
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.0029 Score=58.02 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=57.0
Q ss_pred CCCCCCCCCcEEEEEeCCCcchhHHHHHhhh-------c-------------CCeeEEecCCCCCCCChHHHHHHhcCCC
Q 035625 363 SSKSENLGDLRVSFSRLPKESKCVSCCLINE-------S-------------AETNCLVLGGVPDDPDAEMRKARKMKVP 422 (954)
Q Consensus 363 ~~~~~pl~~~~i~i~G~~~~~~~~~k~~I~~-------~-------------~~~thlI~t~~e~~~~~~vk~a~~~~i~ 422 (954)
.+...-|+|++|.+.+.. +.+.++..|.. . ..+||+|+......+ +..+..
T Consensus 7 ~~~~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-------~~~~r~ 77 (100)
T 2ep8_A 7 GKHKKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-------SVIGRC 77 (100)
T ss_dssp SCSCCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-------CBTTBE
T ss_pred CchHHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-------hcCCCe
Confidence 345678999999998865 56778888776 1 358999987643311 224679
Q ss_pred eechhhHHHHhhcCCCCCCCccc
Q 035625 423 IVREDYLVDCFKRQKKLPFDLYK 445 (954)
Q Consensus 423 IVs~dwL~d~~~~~~~~~~~~y~ 445 (954)
+|.++|+.||+..++.+|+.+|.
T Consensus 78 ~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 78 YVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp EECTHHHHHHHHHTSCCCTTTCC
T ss_pred EEcchHHHHHHhcCCcCChhhcC
Confidence 99999999999999999999884
No 57
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=96.67 E-value=0.0016 Score=68.02 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEeCCC-cchhHHHHHhhhcC--------------CeeEE-ecCCCCCCCChHHHHH-HhcCCCeechhh
Q 035625 366 SENLGDLRVSFSRLPK-ESKCVSCCLINESA--------------ETNCL-VLGGVPDDPDAEMRKA-RKMKVPIVREDY 428 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~-~~~~~~k~~I~~~~--------------~~thl-I~t~~e~~~~~~vk~a-~~~~i~IVs~dw 428 (954)
.++|.|+.|.+.|.+. ...++|+.+|+..+ +++|+ |++.+......+++.+ ...+++||+.+|
T Consensus 115 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~W 194 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDW 194 (229)
T ss_dssp --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHH
T ss_pred hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhH
Confidence 4799999999999875 45889999988721 24564 4444332222334433 346999999999
Q ss_pred HHHHhhcCCCCCCCccccc
Q 035625 429 LVDCFKRQKKLPFDLYKVE 447 (954)
Q Consensus 429 L~d~~~~~~~~~~~~y~l~ 447 (954)
|.||+..+..++++.|.+.
T Consensus 195 lldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 195 VLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHhcCCcCCccceEcc
Confidence 9999999999999999885
No 58
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=96.56 E-value=0.0019 Score=66.53 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=56.4
Q ss_pred CCCCCCCcEEEEEeCC-CcchhHHHHHhhhcC--------CeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 365 KSENLGDLRVSFSRLP-KESKCVSCCLINESA--------ETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~-~~~~~~~k~~I~~~~--------~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
..+.|.|+.|.+.+.+ ..+.++|+.+|+..+ .++++|+.... ++..+++||+++||.||+..
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~---------~~~~~~~~V~p~Wi~DsI~~ 186 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYSG---------KKKATVKYLSEKWVLDSITQ 186 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGGCSEEESCCCS---------CCCTTCEEECHHHHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCCCEEEEeCCch---------hccCCCcEEChhHHHHHHHc
Confidence 3589999975555544 557899999999832 35566654222 23469999999999999999
Q ss_pred CCCCCCCccccc
Q 035625 436 QKKLPFDLYKVE 447 (954)
Q Consensus 436 ~~~~~~~~y~l~ 447 (954)
+..+|+++|++.
T Consensus 187 ~~llp~~~Y~~~ 198 (199)
T 3u3z_A 187 HKVCAPENYLLS 198 (199)
T ss_dssp TSCCCGGGGBCC
T ss_pred CCcCChHhccCC
Confidence 999999999874
No 59
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=96.41 E-value=0.003 Score=65.00 Aligned_cols=83 Identities=10% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCCCCCCcEEEEEeCCC-cchhHHHHHhhhcCC--------------eeEEecCCCCC-CCChHHH-HHHhcCCCeechh
Q 035625 365 KSENLGDLRVSFSRLPK-ESKCVSCCLINESAE--------------TNCLVLGGVPD-DPDAEMR-KARKMKVPIVRED 427 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~-~~~~~~k~~I~~~~~--------------~thlI~t~~e~-~~~~~vk-~a~~~~i~IVs~d 427 (954)
..+.|.|+.|.+.|.+. .+.++|+.+|+..++ ++++|+...+. ....+++ .|++.+++||+.+
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHH
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEecc
Confidence 35789999999999885 458899999987221 23454433322 1122232 2345699999999
Q ss_pred hHHHHhhcCCCCCCCccccc
Q 035625 428 YLVDCFKRQKKLPFDLYKVE 447 (954)
Q Consensus 428 wL~d~~~~~~~~~~~~y~l~ 447 (954)
||.||+..+..+|+++|.+.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHTSCCCSGGGBCC
T ss_pred HHHHhHhhcCcCCCcceeec
Confidence 99999999999999999875
No 60
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.00087 Score=71.85 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=58.0
Q ss_pred CCCCCCcEEEE-EeCCC------cchhHHHHHhhhcCC--------------eeEEecCCCCCCCChHHHHHHhcCCCee
Q 035625 366 SENLGDLRVSF-SRLPK------ESKCVSCCLINESAE--------------TNCLVLGGVPDDPDAEMRKARKMKVPIV 424 (954)
Q Consensus 366 ~~pl~~~~i~i-~G~~~------~~~~~~k~~I~~~~~--------------~thlI~t~~e~~~~~~vk~a~~~~i~IV 424 (954)
.+.|.|+.|.| .|.+. .++++|..+|...++ +||+|+... ..+++.+.+.+++||
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~----t~k~~~~~~~~~~vV 78 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKT----TTECKALIDRGYDIL 78 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSC----CGGGGGGTTTTCCCB
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCC----cHHHHHHHhCCCCEE
Confidence 46899999976 66443 267889999987211 357777542 345556666789999
Q ss_pred chhhHHHHhhcCCCCCCCcccc
Q 035625 425 REDYLVDCFKRQKKLPFDLYKV 446 (954)
Q Consensus 425 s~dwL~d~~~~~~~~~~~~y~l 446 (954)
+.+||.||+..++.+|+.+|.+
T Consensus 79 ~p~Wv~dci~~~~llp~~~y~~ 100 (264)
T 1z56_C 79 HPNWVLDCIAYKRLILIEPNYC 100 (264)
T ss_dssp CSSTTHHHHSSCSCCCCCSCBS
T ss_pred echHHHHHhhcCCCCCCChHHh
Confidence 9999999999999999999855
No 61
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.21 E-value=0.00077 Score=80.96 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcC
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQ 436 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~ 436 (954)
..||.|+.|++.|+|..++++++++|+. ++.|++||+.+. .+.|+++|+++||||++++++.+.+..+
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~---~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGEN---PGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCC---CChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 5689999999999997788999999998 466789998863 4688999999999999999888877543
No 62
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.14 E-value=0.00088 Score=80.54 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEeCCCc-chhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhh
Q 035625 366 SENLGDLRVSFSRLPKE-SKCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFK 434 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~-~~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~ 434 (954)
..||.|+.|++.|+|.. ++++++++|+. ++.|++||+.+. .+.|+++|+++||||++++++.+.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~---~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEA---AGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCC---CChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 56899999999999975 89999999998 466789998853 46889999999999999999987764
No 63
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0047 Score=57.19 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=51.5
Q ss_pred CCCCCCCCcEEEEEeCC-CcchhH-HHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHh----cCCCeechhh
Q 035625 364 SKSENLGDLRVSFSRLP-KESKCV-SCCLINE---------SAETNCLVLGGVPDDPDAEMRKARK----MKVPIVREDY 428 (954)
Q Consensus 364 ~~~~pl~~~~i~i~G~~-~~~~~~-~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~----~~i~IVs~dw 428 (954)
..+.-|+|+.|.+...- .....+ +.+++.. ..+|||+|+.+.. .....++..+. .+++||+++|
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~-s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM-DYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS-CHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC-CHHHHHHHHhhcccCCCcEEecCch
Confidence 34567888888764322 122223 3334444 3679999996422 11111222222 2677999999
Q ss_pred HHHHhhcCCCCCCCcccc
Q 035625 429 LVDCFKRQKKLPFDLYKV 446 (954)
Q Consensus 429 L~d~~~~~~~~~~~~y~l 446 (954)
++||++.+++++++.|.+
T Consensus 86 v~dci~~~~llde~~y~~ 103 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFSI 103 (106)
T ss_dssp HHHHHHTCSCCCGGGTBC
T ss_pred HHHHHhcCcccCcccccc
Confidence 999999999999999965
No 64
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=96.04 E-value=0.011 Score=63.44 Aligned_cols=80 Identities=11% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCCCCcEEEEEeCC---------Ccch-hHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHh---cCCCe
Q 035625 366 SENLGDLRVSFSRLP---------KESK-CVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARK---MKVPI 423 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~---------~~~~-~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~---~~i~I 423 (954)
..-|+|++|-+.+.. .... +-++.+|.. ...|||||+..... +...++..++ .+++|
T Consensus 162 ~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~-r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 162 LSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHS-RVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCT-THHHHHHHHHTCSSCCEE
T ss_pred chhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCc-cHHHHHHHHhhcCCCCEE
Confidence 467899999997632 1112 234566665 34689999976332 2233444443 47899
Q ss_pred echhhHHHHhhcCCCCCCCcccc
Q 035625 424 VREDYLVDCFKRQKKLPFDLYKV 446 (954)
Q Consensus 424 Vs~dwL~d~~~~~~~~~~~~y~l 446 (954)
|+.+|+++|++.++.+++.+|.+
T Consensus 241 V~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EETHHHHHHHHTTSCCCGGGTBC
T ss_pred eChHHHHHHHHcCCcCCHhhCCC
Confidence 99999999999999999999974
No 65
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.86 E-value=0.02 Score=54.09 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCCCCCCCCCcEEEEEeCC-Ccch-hHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHh-------cCCCe
Q 035625 362 QSSKSENLGDLRVSFSRLP-KESK-CVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARK-------MKVPI 423 (954)
Q Consensus 362 ~~~~~~pl~~~~i~i~G~~-~~~~-~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~-------~~i~I 423 (954)
..++.--|+++.|-+...- .... +-+++++.. ...|||||+- +. ....+..... .+.+|
T Consensus 14 ~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve--~~-~~~e~~~~l~~~~l~~~~~~~l 90 (120)
T 2coe_A 14 SSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAE--NN-SGSDVLEWLQAQKVQVSSQPEL 90 (120)
T ss_dssp SCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEES--SC-CHHHHHHHHHHCCCCCSSCCEE
T ss_pred CCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEec--CC-CHHHHHHHHhccccccccccEE
Confidence 4456678999999987653 2233 334444443 5679999993 22 3233333222 26799
Q ss_pred echhhHHHHhhcCCCCCCCcc
Q 035625 424 VREDYLVDCFKRQKKLPFDLY 444 (954)
Q Consensus 424 Vs~dwL~d~~~~~~~~~~~~y 444 (954)
|+..||++|++.++++++..+
T Consensus 91 v~i~Wl~esmk~g~lv~ee~~ 111 (120)
T 2coe_A 91 LDVSWLIECIGAGKPVEMTGK 111 (120)
T ss_dssp EEHHHHHHHHHTTSCCCCSSS
T ss_pred eecHHHHHHHHcCCccCcccc
Confidence 999999999999999998544
No 66
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.75 E-value=0.0089 Score=67.11 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCCCccEEEEEEEEcCCCCcEEEEEEeeecccccCCCccccCC-CHHHHHHHHHHHHHHHhCCCc
Q 035625 496 STGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSKLEEC-SKEDAVCEFKRLFLEKTGNPW 559 (954)
Q Consensus 496 ~~~~N~fY~lQll~~~~~~~y~v~~~WGRVG~~~~G~~kl~~~-s~e~Ai~~F~k~F~eKTGn~W 559 (954)
..|.++||.|-+-. ..+-++|||||+. ||.+...| +.++|.++|.++-.+|+....
T Consensus 9 ~~~~~kf~~~~~~~------~~~~~~~GriG~~--g~~~~~~f~~~~~a~~~~~~l~~~k~~kGy 65 (362)
T 2ra8_A 9 DFKSQKFWSIDVRG------TDVIVNYGKLGTD--GQTQVKNFSSAGEAEKAAGKLIAEKTKKGY 65 (362)
T ss_dssp SSSCEEEEEEEEET------TEEEEEEEETTSC--CEEEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCcCceEEEEEec------cEEEEEECCCCCC--ceEEeeeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 35778999998862 2678999999986 89998888 599999999999999976544
No 67
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=95.61 E-value=0.015 Score=60.12 Aligned_cols=81 Identities=7% Similarity=0.068 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhhcCC-----------eeEEec-CCCCCCCChHHHHHHhcCCCeechhhHHHHh
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINESAE-----------TNCLVL-GGVPDDPDAEMRKARKMKVPIVREDYLVDCF 433 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~~~~-----------~thlI~-t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~ 433 (954)
.+.|.|+.|.+.+......+.++.+|+..++ .+++|. ++++. ...+.+.+.++|||+.+||.+|+
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~---~~~~~~~~~~i~vvs~eWi~~sI 189 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDF---PHCSIPLRVGLPLLSPEFLLTGV 189 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGG---GGCHHHHHHTCCEECTHHHHHHH
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccH---HHHHHHHHCCCeEEcHHHHHHHH
Confidence 4899999999999887778899998887222 134444 33332 23445666799999999999999
Q ss_pred hcCCCCCCCcccccccC
Q 035625 434 KRQKKLPFDLYKVEVVG 450 (954)
Q Consensus 434 ~~~~~~~~~~y~l~~~~ 450 (954)
...+ ++++.|.+.+..
T Consensus 190 ~~q~-ld~e~y~l~~~~ 205 (209)
T 2etx_A 190 LKQE-AKPEAFVLSPLE 205 (209)
T ss_dssp HHTC-CCGGGGBCCTTC
T ss_pred Hhcc-cChHHheecCCC
Confidence 9866 488889886543
No 68
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=95.55 E-value=0.0097 Score=53.21 Aligned_cols=64 Identities=5% Similarity=0.067 Sum_probs=50.7
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhh----------cCCeeEEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhc
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINE----------SAETNCLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKR 435 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~----------~~~~thlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~ 435 (954)
...|.|++|.+.+.++.. ..+...|.. ...+||+|++.++ ..+..+|+.+|+.||+.+
T Consensus 14 pdiFsg~~~~l~~~v~~~-~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~-----------~~~~~~V~p~WI~dcI~k 81 (88)
T 3pc7_A 14 LDIFTGVRLYLPPSTPDF-SRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK-----------NPAAQQVSPEWIWACIRK 81 (88)
T ss_dssp CCCSTTCEECCCTTSTTH-HHHHHHHHHTTCEECCGGGGGGCSEEESCCTT-----------CTTSEEECHHHHHHHHHH
T ss_pred ChhhcCeEEEccCCcCch-hhheeeeeecCCEEecccCCCcCeEEecCCCc-----------CCCCcEEchHHHHHHHhC
Confidence 467899999999998653 566776654 2469999987742 357899999999999999
Q ss_pred CCCCCC
Q 035625 436 QKKLPF 441 (954)
Q Consensus 436 ~~~~~~ 441 (954)
++.+|.
T Consensus 82 ~~Ll~~ 87 (88)
T 3pc7_A 82 RRLVAP 87 (88)
T ss_dssp TSCCSC
T ss_pred CcccCC
Confidence 988764
No 69
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.018 Score=61.59 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=37.5
Q ss_pred CCCCCCCcEEEEEeCCCcc-hhHHHHHhhh---------cCCeeEEecCCCCCCCC---hHHHHHH--h-------cCC-
Q 035625 365 KSENLGDLRVSFSRLPKES-KCVSCCLINE---------SAETNCLVLGGVPDDPD---AEMRKAR--K-------MKV- 421 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~~~~-~~~~k~~I~~---------~~~~thlI~t~~e~~~~---~~vk~a~--~-------~~i- 421 (954)
+..-|+|++|.+.|..... .+-++..|.. ...|||||+......+. .++++.. . .++
T Consensus 157 ~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (264)
T 1z56_C 157 PLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIA 236 (264)
T ss_dssp CCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCC
T ss_pred chhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCC
Confidence 3567899999999965332 3334555555 23456666643221111 1233221 1 144
Q ss_pred CeechhhHHHHhhcCCCCCCCcccc
Q 035625 422 PIVREDYLVDCFKRQKKLPFDLYKV 446 (954)
Q Consensus 422 ~IVs~dwL~d~~~~~~~~~~~~y~l 446 (954)
+||+.+||++|++.++.++++.|.+
T Consensus 237 ~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 237 RVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp EEECTHHHHHHHTTSCCCSSCCC--
T ss_pred EEecHHHHHHHHHcCCcCCHHHcCC
Confidence 8999999999999999999999965
No 70
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=94.33 E-value=0.056 Score=57.78 Aligned_cols=78 Identities=12% Similarity=0.279 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEeCCCcc-hhHHHHHhhhcCC------------------eeEEecCCCCCCCChHHHHHHhcCCCeech
Q 035625 366 SENLGDLRVSFSRLPKES-KCVSCCLINESAE------------------TNCLVLGGVPDDPDAEMRKARKMKVPIVRE 426 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~-~~~~k~~I~~~~~------------------~thlI~t~~e~~~~~~vk~a~~~~i~IVs~ 426 (954)
.++|.|+.|.+.|..... .+.+...|+..++ .+++|.+.... .....+.|.+.++|||+.
T Consensus 153 ~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~-~~~~~~~a~~~~i~iVs~ 231 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSC-PASVLKCAEALQLPVVSQ 231 (259)
T ss_dssp CCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTC-CHHHHHHHHHHTCCEECH
T ss_pred CCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCC-hHHHHHHHHhcCCCEecH
Confidence 689999999999987543 3445555554222 23343332221 123445677789999999
Q ss_pred hhHHHHhhcCCCCCCCcc
Q 035625 427 DYLVDCFKRQKKLPFDLY 444 (954)
Q Consensus 427 dwL~d~~~~~~~~~~~~y 444 (954)
+||.+|+..+..++.+.+
T Consensus 232 EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 232 EWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp HHHHHHHHHTSCCCTTSS
T ss_pred HHHHHHHHhCCcCCCCcC
Confidence 999999999988877643
No 71
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=93.21 E-value=0.06 Score=55.39 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=51.4
Q ss_pred CCCCCCcEEEEEeCCC-cchhHHHHHhhhcCC--------------------------------eeEEecCCCCCCCChH
Q 035625 366 SENLGDLRVSFSRLPK-ESKCVSCCLINESAE--------------------------------TNCLVLGGVPDDPDAE 412 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~-~~~~~~k~~I~~~~~--------------------------------~thlI~t~~e~~~~~~ 412 (954)
.+.|.|+.|.+.|.+. .+.++|+.+|+..++ +||.|......+..
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~-- 179 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYH-- 179 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCC--
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccC--
Confidence 5789999999999875 468899999988333 23333322111000
Q ss_pred HHHHHhcCCCeechhhHHHHhhcCCCCCCC
Q 035625 413 MRKARKMKVPIVREDYLVDCFKRQKKLPFD 442 (954)
Q Consensus 413 vk~a~~~~i~IVs~dwL~d~~~~~~~~~~~ 442 (954)
...|+..+|++|+.+||.||+...+.+|.+
T Consensus 180 ~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 180 PERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 011333578999999999999999988875
No 72
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=92.62 E-value=0.087 Score=55.50 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=57.1
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhhc-------------CCeeEEecCCCCC---CCChHHHHHHhcCCCeechhhH
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINES-------------AETNCLVLGGVPD---DPDAEMRKARKMKVPIVREDYL 429 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~~-------------~~~thlI~t~~e~---~~~~~vk~a~~~~i~IVs~dwL 429 (954)
.+.|.|++|.+.+.. ...+.++..|+.- ...||+++..... .....++.+.+.||+||+.+||
T Consensus 133 ~~lF~g~~v~l~~~~-~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewl 211 (235)
T 3al2_A 133 EGAFSGWKVILHVDQ-SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211 (235)
T ss_dssp SSTTTTCEEEEECCH-HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHH
T ss_pred CCCCCCcEEEEecCC-CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHH
Confidence 589999999999863 3346788888871 1245654432211 1112466667789999999999
Q ss_pred HHHhhcCCCCCCCccccc
Q 035625 430 VDCFKRQKKLPFDLYKVE 447 (954)
Q Consensus 430 ~d~~~~~~~~~~~~y~l~ 447 (954)
.|++......+.+.|.|.
T Consensus 212 ld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 212 ADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHCSSCCCHHHHBCG
T ss_pred HHHHhcCCCCChhheEcc
Confidence 999999988888888774
No 73
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=92.54 E-value=0.21 Score=51.92 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=57.4
Q ss_pred CCCCCCcEEEEEeCCCcchhHHHHHhhhcC----------------------CeeEEecCCCCCCCChHHHHHHhcCCCe
Q 035625 366 SENLGDLRVSFSRLPKESKCVSCCLINESA----------------------ETNCLVLGGVPDDPDAEMRKARKMKVPI 423 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~~~~~k~~I~~~~----------------------~~thlI~t~~e~~~~~~vk~a~~~~i~I 423 (954)
.+.|.|+.|.+.|.+..+.++++.+|+..+ ....||+++++. ...+.+.+.|+||
T Consensus 120 ~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~---~~~~~~~~~~~~v 196 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDL---HLCREYFARGIDV 196 (219)
T ss_dssp SCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGG---GGGHHHHHTTCCC
T ss_pred ccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHH---HHHHHHHHCCCcE
Confidence 579999999999999888889999998721 124566665543 4466677789999
Q ss_pred echhhHHHHhhcCCCCCCCccc
Q 035625 424 VREDYLVDCFKRQKKLPFDLYK 445 (954)
Q Consensus 424 Vs~dwL~d~~~~~~~~~~~~y~ 445 (954)
++.|||.+++-+++. ..+.|.
T Consensus 197 ~s~E~il~~Il~q~l-d~~~~~ 217 (219)
T 3sqd_A 197 HNAEFVLTGVLTQTL-DYESYK 217 (219)
T ss_dssp EETHHHHHHHHHTCC-CTTTSB
T ss_pred EeHHHHHHHHHheee-cchhcc
Confidence 999999999987654 444454
No 74
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=91.84 E-value=0.077 Score=50.75 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=55.0
Q ss_pred CCCCCCCcEEEEEeCC-Ccc-hhHHHHHhhh---------cCCeeEEecCCCCCCCCh-----HHHHHH--hcCCCeech
Q 035625 365 KSENLGDLRVSFSRLP-KES-KCVSCCLINE---------SAETNCLVLGGVPDDPDA-----EMRKAR--KMKVPIVRE 426 (954)
Q Consensus 365 ~~~pl~~~~i~i~G~~-~~~-~~~~k~~I~~---------~~~~thlI~t~~e~~~~~-----~vk~a~--~~~i~IVs~ 426 (954)
...-|.++.|-|.+.- +.. .+-|.+++.. +..|||||+-....+.-. ++.++. ..+..+|+.
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 4467899999999853 333 3556666665 578999999222211111 222222 136889999
Q ss_pred hhHHHHhhcCCCCCCC-ccccc
Q 035625 427 DYLVDCFKRQKKLPFD-LYKVE 447 (954)
Q Consensus 427 dwL~d~~~~~~~~~~~-~y~l~ 447 (954)
.||.+|+..+++++++ .|.|.
T Consensus 87 sWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTTSCC
T ss_pred HHHHHHHhcCCcCCcccceEee
Confidence 9999999999999984 44443
No 75
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.27 Score=44.39 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCCCCcEEEEEeCCC-----cchhHHHHHhhhcCCee-EEecCCCCCCCChHHHHHHhcCCCeechhhHHHHhhcCCCC
Q 035625 366 SENLGDLRVSFSRLPK-----ESKCVSCCLINESAETN-CLVLGGVPDDPDAEMRKARKMKVPIVREDYLVDCFKRQKKL 439 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~-----~~~~~~k~~I~~~~~~t-hlI~t~~e~~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~ 439 (954)
..+|.||.|.+.-..+ ...++++++|.+.+++- .... ++.-+.---|-.--.-++|.|+..|+..|+..+..+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP-~~s~~~~yVVSpyN~t~LpTVtpTYI~aC~~~nTLL 87 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKP-RESKENVFIVSPYNHTNLPTVTPTYIKACCQSNSLL 87 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECC-CCCSSCCCCBCTTCCCSSSBCCTTHHHHHHHSTTSC
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCc-ccccCCeEEEeCCCCCCCccccHHHHHHHHhcCcee
Confidence 4569999999987543 23689999999976643 2222 211000000000111289999999999999999999
Q ss_pred CCCccccc
Q 035625 440 PFDLYKVE 447 (954)
Q Consensus 440 ~~~~y~l~ 447 (954)
..+.|++.
T Consensus 88 nv~~YLvp 95 (106)
T 2l42_A 88 NMENYLVP 95 (106)
T ss_dssp GGGGCCBC
T ss_pred cccccccC
Confidence 99999874
No 76
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=81.27 E-value=1.2 Score=39.92 Aligned_cols=31 Identities=32% Similarity=0.754 Sum_probs=21.9
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..+|.+|.+.|..|+..|... + .-||+.||.
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a~-------~-~~~H~~CF~ 96 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEYK-------G-TVWHKDCFS 96 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEESS-------S-CEEETTTCC
T ss_pred CCccccCCCccccCCeEEEeC-------C-cchHHhCCC
Confidence 347999999999877555332 1 346899996
No 77
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=80.60 E-value=2.8 Score=38.89 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhhh
Q 035625 222 QTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGMM 269 (954)
Q Consensus 222 Q~~~~w~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~ 269 (954)
|..++-.+...|+ .|++++|+++|..++-.+.|.+.+|++|+...+-
T Consensus 26 ~~~e~~~~~~~l~-kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~ 72 (114)
T 2rnn_A 26 LRNEVEETITLME-LLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQ 72 (114)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH-HhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHH
Confidence 6677878888886 4999999999999999999999999999997654
No 78
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.00 E-value=2.9 Score=41.18 Aligned_cols=52 Identities=17% Similarity=0.418 Sum_probs=39.6
Q ss_pred CCeeEEecCCCCC-CCChHHHHHHhcCCCeechhhHHHHhhcCCCCCCCcccc
Q 035625 395 AETNCLVLGGVPD-DPDAEMRKARKMKVPIVREDYLVDCFKRQKKLPFDLYKV 446 (954)
Q Consensus 395 ~~~thlI~t~~e~-~~~~~vk~a~~~~i~IVs~dwL~d~~~~~~~~~~~~y~l 446 (954)
-++||.||..-+- +.+..+-.|+-.+||||+.+|+..|.-.++......|-+
T Consensus 201 idtthfvcndldneesneelirakhnnipivrpewvracevekrivgvrgfyl 253 (290)
T 4gns_A 201 IDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEVEKRIVGVRGFYL 253 (290)
T ss_dssp TTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHHTTSCCCSGGGBT
T ss_pred eecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhhhheeeeeeeEEE
Confidence 4689999988554 456777788888999999999999977666555444433
No 79
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=74.14 E-value=4.5 Score=41.90 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCCCCcEEEEEeCC--CcchhHHHHHhhhcCCe-------------------eEEecCCCCCCCChH-HHHHHh-cCCC
Q 035625 366 SENLGDLRVSFSRLP--KESKCVSCCLINESAET-------------------NCLVLGGVPDDPDAE-MRKARK-MKVP 422 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~--~~~~~~~k~~I~~~~~~-------------------thlI~t~~e~~~~~~-vk~a~~-~~i~ 422 (954)
.+.|.|+.|.+.+.+ ..+.++++.+|+..++. ..||+++++...=.+ .+.+.. .++.
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~ 190 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIF 190 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEE
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEE
Confidence 689999999999988 67789999998884331 356677544321011 122322 3566
Q ss_pred eechhhHHHHhhcCCCCCCC
Q 035625 423 IVREDYLVDCFKRQKKLPFD 442 (954)
Q Consensus 423 IVs~dwL~d~~~~~~~~~~~ 442 (954)
||+.|||.+++-+++..-.+
T Consensus 191 i~~~e~ll~~il~q~l~~~~ 210 (220)
T 3l41_A 191 LQNYDWLIKTVLRQEIDVND 210 (220)
T ss_dssp EEEHHHHHHHHHHTCCCTTC
T ss_pred EechhHHHHHHHHHHcCcch
Confidence 99999999998877644333
No 80
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=70.80 E-value=1.8 Score=40.95 Aligned_cols=34 Identities=32% Similarity=0.811 Sum_probs=25.6
Q ss_pred hhhcCCCCCCCCCCCcEEEe-CceEEEecCccCcc
Q 035625 267 GMMFGALGRCPICSGPLRYS-GGIYRCRGYQSAWS 300 (954)
Q Consensus 267 ~~~fG~l~~Cp~C~g~l~~~-~~~Y~C~G~~sewt 300 (954)
|-++-.|++||.|+....|. +..|.|+----||+
T Consensus 21 g~~M~~lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 21 GHMVSTLPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp --CCCCSCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred ccccccCCCCCCCCCcceEecCCeEECCccccccC
Confidence 56667899999998877665 67899987666775
No 81
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=69.80 E-value=5 Score=32.51 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhhhc
Q 035625 236 HVTTAELREMLEANGQDSTGSELDLRDHCADGMMF 270 (954)
Q Consensus 236 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~f 270 (954)
.+++.+|+++|...+-.+.|.+..|++|+...+-=
T Consensus 12 klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 12 KLKLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp TSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999876543
No 82
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=67.89 E-value=6.2 Score=31.46 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHcCCCCCCChhHHHHHhhhh
Q 035625 236 HVTTAELREMLEANGQDSTGSELDLRDHCADG 267 (954)
Q Consensus 236 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 267 (954)
.+++.+||++|...+-.+.|.+..|++|+...
T Consensus 7 kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 7 SLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp GCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999999998653
No 83
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=67.62 E-value=5.8 Score=41.58 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCCCCcEEEEEeCCCcc-------------hhHHHHHhhhcCC-----------eeEEecCCCCCCCChHHHHHHhcCC
Q 035625 366 SENLGDLRVSFSRLPKES-------------KCVSCCLINESAE-----------TNCLVLGGVPDDPDAEMRKARKMKV 421 (954)
Q Consensus 366 ~~pl~~~~i~i~G~~~~~-------------~~~~k~~I~~~~~-----------~thlI~t~~e~~~~~~vk~a~~~~i 421 (954)
+..|.|..|.+.+.-... .+.+...+...++ .+++|.+.... .+.+.++
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~-------~~~~~~~ 221 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN-------IVDETNC 221 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC-------CCSSCSS
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc-------ccccCCC
Confidence 688999999886532211 1445555554332 23444442211 1456799
Q ss_pred CeechhhHHHHhhcCCCCC
Q 035625 422 PIVREDYLVDCFKRQKKLP 440 (954)
Q Consensus 422 ~IVs~dwL~d~~~~~~~~~ 440 (954)
|||+.+||.+|+..++.++
T Consensus 222 ~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 222 PVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp CEECHHHHHHHHHHTSCTT
T ss_pred CEecHHHHHHHHHhceecC
Confidence 9999999999998876553
No 84
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=64.60 E-value=8.4 Score=30.56 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhh
Q 035625 236 HVTTAELREMLEANGQDSTGSELDLRDHCADGM 268 (954)
Q Consensus 236 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~ 268 (954)
.+++.+||+.|..-+-++.|.+..|++|+...+
T Consensus 12 klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 12 RLKVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp GSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999999997654
No 85
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.54 E-value=5.6 Score=31.14 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=17.1
Q ss_pred CCCCCCCCC-cEEEe--CceEEEe
Q 035625 273 LGRCPICSG-PLRYS--GGIYRCR 293 (954)
Q Consensus 273 l~~Cp~C~g-~l~~~--~~~Y~C~ 293 (954)
+..||.|++ .|+|+ .+.+.|.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~ 28 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA 28 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES
T ss_pred cEeCcCCCCcceEEcCCCCeEECc
Confidence 458999988 99997 3679994
No 86
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=61.42 E-value=8.7 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhhh
Q 035625 236 HVTTAELREMLEANGQDSTGSELDLRDHCADGMM 269 (954)
Q Consensus 236 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~ 269 (954)
.+++.+||+.|...+-.++|.+.+|++|+...+-
T Consensus 28 klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~ 61 (75)
T 2kvu_A 28 DMKVAELKQELKLRSLPVSGTKTELIERLRAYQD 61 (75)
T ss_dssp TSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999986643
No 87
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.11 E-value=13 Score=30.10 Aligned_cols=22 Identities=32% Similarity=0.763 Sum_probs=19.0
Q ss_pred CCCCCCCCCcEEEeCceEEEec
Q 035625 273 LGRCPICSGPLRYSGGIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~~~~Y~C~G 294 (954)
+..||.|+|.|.++.+.-.|.+
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~ 31 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTG 31 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECS
T ss_pred heeCCCCCCcceecCCEEEcCC
Confidence 4589999999999988888874
No 88
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=44.49 E-value=6.6 Score=39.69 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.3
Q ss_pred ceeEecCCCCChhhhhccCCCC
Q 035625 800 MLLWHGSRLTNFVGILSQGLRI 821 (954)
Q Consensus 800 ~lLwHGSr~~N~~gILs~Glri 821 (954)
..|+|||...|+.+|+.+||+.
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~ 113 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMR 113 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCC
T ss_pred CEEEEeCCHHHHHHHHHhCCCC
Confidence 5899999999999999999864
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=40.23 E-value=12 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=24.2
Q ss_pred cccccccccccCCCeEEEEEeeccccCCCCceeeeccccc
Q 035625 18 SSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVL 57 (954)
Q Consensus 18 a~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~ 57 (954)
..|..|++++..+..-|+ =||....|||..|+-
T Consensus 9 ~~C~~C~~p~~~~~~mI~-------CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAIL-------CEASCQKWFHRICTG 41 (65)
T ss_dssp CBCTTTCSBCCTTSCEEE-------BTTTTCCEEEHHHHT
T ss_pred CcCccCCCccCCCCCeEe-------cccCccccCchhccC
Confidence 468899999877765443 344567899999964
No 90
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.14 E-value=14 Score=30.29 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=22.4
Q ss_pred cchhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 113 TSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 113 s~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
.....|.+|.+.|..++.-+... + .-||+.||.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~-------~-~~~H~~CF~ 41 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSN-------G-ELYHEQCFV 41 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEET-------T-EEEETTTSS
T ss_pred cCCccchhcCccccCCceEEEeC-------c-CeeCcCCCc
Confidence 34568999999999776433221 1 235899997
No 91
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.92 E-value=15 Score=30.44 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=20.1
Q ss_pred chhhhhhhcccccc--cceeecccCCCCCCCCcccccccccc
Q 035625 114 SRATCRHCSKKIMK--GEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 114 ~Rs~Ck~C~~kI~K--ge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...+|.+|.+.|.- ++-.|.. .+ +-||+.||.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a-------~~-~~wH~~CF~ 37 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISF-------EE-RQWHNDCFN 37 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEEC-------SS-CEECTTTCB
T ss_pred CCCCCcCCCccccCCCCcceEEE-------CC-cccCcccCE
Confidence 34579999999985 3333321 12 345899997
No 92
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.35 E-value=13 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=20.9
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...|.+|.+.|.-++..|... + .-||+.||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~-------~-~~~H~~CF~ 35 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL-------D-RVFHVGCFV 35 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS-------S-SEECTTTCB
T ss_pred CCCCccCCCccCCCceEEEEC-------C-CeEcccCCc
Confidence 357999999998655444321 1 345899997
No 93
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=35.08 E-value=31 Score=37.60 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=33.8
Q ss_pred hhHHHHHhhh---------cCCeeEEecCCCCCCCChHHHHHHh--cCCCeechhhHHHHhhc
Q 035625 384 KCVSCCLINE---------SAETNCLVLGGVPDDPDAEMRKARK--MKVPIVREDYLVDCFKR 435 (954)
Q Consensus 384 ~~~~k~~I~~---------~~~~thlI~t~~e~~~~~~vk~a~~--~~i~IVs~dwL~d~~~~ 435 (954)
..++.+.++. ++.|||||.....- ...+++-.++ .|+|||..+||.+....
T Consensus 126 ~~~L~~~L~~LGik~v~~~~detTHlVm~krnT-~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTGLRDSDATTHFVMNRQAG-SSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEESSCCTTCCEEECCCCCS-SCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEccCCCEEEEEEecccc-ccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 3456667666 45699999964311 1123444444 59999999999998653
No 94
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.43 E-value=16 Score=30.13 Aligned_cols=30 Identities=30% Similarity=0.772 Sum_probs=20.5
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.-++..|... + .-||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~-------~-~~~H~~CF~ 35 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYG-------G-QTWHEHCFL 35 (72)
T ss_dssp CBCSSSCCBCCSSSCEECST-------T-CCEETTTCB
T ss_pred CCCccCCCccccCccEEEEC-------c-cccCcccCe
Confidence 47999999998754444321 2 245889997
No 95
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=16 Score=30.92 Aligned_cols=30 Identities=37% Similarity=0.965 Sum_probs=20.9
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.-++..|... +..| |+.||.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~-------~~~~-H~~CF~ 45 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYK-------GTVW-HKDCFT 45 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECS-------SCEE-ETTTCC
T ss_pred CcCccCCcccccCceEEEEC-------cccc-ccccCc
Confidence 57999999998766444321 2234 899997
No 96
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.73 E-value=18 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCCCCCCCCC-cEEEe--CceEEEecCccCcccccccc
Q 035625 272 ALGRCPICSG-PLRYS--GGIYRCRGYQSAWSKCSYST 306 (954)
Q Consensus 272 ~l~~Cp~C~g-~l~~~--~~~Y~C~G~~sewtkC~~~t 306 (954)
....||.|++ +|+|+ .+.+.| +.|-.+.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC-------~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMIC-------PECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEEC-------TTTCCEE
T ss_pred ccccCcCCCCCceeEeCCCCeEEe-------CCCCCEE
Confidence 3457999976 89996 468999 4566543
No 97
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.91 E-value=18 Score=30.76 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=19.1
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...|.+|.+.|. |+. |.. .+ .-||+.||.
T Consensus 15 ~~~C~~C~~~I~-~~~-v~a-------~~-~~~H~~CF~ 43 (79)
T 2cor_A 15 KYICQKCHAIID-EQP-LIF-------KN-DPYHPDHFN 43 (79)
T ss_dssp CCBCTTTCCBCC-SCC-CCC-------SS-SCCCTTTSB
T ss_pred CCCCccCCCEec-ceE-EEE-------Cc-ceeCCCCCE
Confidence 457999999998 443 211 12 345889997
No 98
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.52 E-value=27 Score=29.49 Aligned_cols=22 Identities=41% Similarity=0.898 Sum_probs=17.2
Q ss_pred CCCCCCCCCcEEEeC--ceEEEec
Q 035625 273 LGRCPICSGPLRYSG--GIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~~--~~Y~C~G 294 (954)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKG 31 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETT
T ss_pred heeCCCCCCcCeEeCCCCEEEcCC
Confidence 457999999999974 5677753
No 99
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.04 E-value=30 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.591 Sum_probs=23.9
Q ss_pred EcccCCcccccccccccCCCeEEEEEeeccccCCCCceeeeccccccc
Q 035625 12 YAKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRK 59 (954)
Q Consensus 12 YAkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~ 59 (954)
|.+..-..|.+|++.|.-++..|- ..| ..| |..||.=.
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~~-------a~~--~~~-H~~CF~C~ 47 (82)
T 1x63_A 10 TTREDSPKCKGCFKAIVAGDQNVE-------YKG--TVW-HKDCFTCS 47 (82)
T ss_dssp CSCCCSCBCSSSCCBCCSSSCEEE-------CSS--CEE-ETTTCCCS
T ss_pred HccccCCcCccCCcccccCceEEE-------ECc--ccc-ccccCchh
Confidence 444445689999999987654331 122 235 78898643
No 100
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.77 E-value=29 Score=29.17 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.3
Q ss_pred CCCCCCCCCcEEEe--CceEEEec
Q 035625 273 LGRCPICSGPLRYS--GGIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~--~~~Y~C~G 294 (954)
+..||.|+|.|.|+ .+.-+|..
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~ 33 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNER 33 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETT
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCC
Confidence 45799999999998 35677853
No 101
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.33 E-value=33 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.798 Sum_probs=17.3
Q ss_pred CCCCCCCCCcEEEeC--ceEEEec
Q 035625 273 LGRCPICSGPLRYSG--GIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~~--~~Y~C~G 294 (954)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNA 31 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETT
T ss_pred heECCCCCCcCEEeCCCCEEEcCC
Confidence 568999999999984 4677753
No 102
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.35 E-value=17 Score=29.87 Aligned_cols=30 Identities=37% Similarity=0.870 Sum_probs=20.6
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.-++..|... + .-||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~-------~-~~~H~~CF~ 35 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYK-------G-SSWHETCFI 35 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEET-------T-EEEETTTTC
T ss_pred CCCccCCCcccCCceEEEEC-------c-CeecccCCc
Confidence 47999999998765444321 1 345899997
No 103
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.83 E-value=31 Score=29.00 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=17.3
Q ss_pred CCCCCCCCCcEEEeC--ceEEEec
Q 035625 273 LGRCPICSGPLRYSG--GIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~~--~~Y~C~G 294 (954)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQ 31 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCC
Confidence 457999999999984 5677753
No 104
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=28.62 E-value=30 Score=34.48 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=24.9
Q ss_pred CCCCCCCCCcEE-EeCceEEEecCccCccccccccCCccc
Q 035625 273 LGRCPICSGPLR-YSGGIYRCRGYQSAWSKCSYSTREPER 311 (954)
Q Consensus 273 l~~Cp~C~g~l~-~~~~~Y~C~G~~sewtkC~~~t~~p~R 311 (954)
-+.||.|+..+. -.++.|.| -+|.-. .+|..
T Consensus 42 Y~ACp~CnKKV~~~~~g~~~C-------ekC~~~-~~~~~ 73 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHGDSFFC-------ESCQQF-INPQV 73 (172)
T ss_dssp EEECTTSCCCEEEETTTEEEE-------TTTTEE-CCCEE
T ss_pred ehhchhhCCEeeeCCCCeEEC-------CCCCCC-CCceE
Confidence 357999998887 55688999 689988 77764
No 105
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=28.51 E-value=7.5 Score=46.62 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=20.1
Q ss_pred cCCCCCCCCCC-CcEEEeC-----ceEEEecCccCccccccccCCc
Q 035625 270 FGALGRCPICS-GPLRYSG-----GIYRCRGYQSAWSKCSYSTREP 309 (954)
Q Consensus 270 fG~l~~Cp~C~-g~l~~~~-----~~Y~C~G~~sewtkC~~~t~~p 309 (954)
.|+.++||.|+ |.|+... ..|.|.+| ..|.|+...+
T Consensus 569 ~g~~G~CP~Cg~g~l~~r~~k~G~~f~gCs~y----p~C~f~~~~~ 610 (633)
T 2gai_A 569 FGKYGFYLKCECGKTRSVKNDEIAVIDDGKIF----LGRKDSESGS 610 (633)
T ss_dssp EETTEEEEECSSSCCEECCTTSBCEEETTEEE----C---------
T ss_pred ccccccCcccCCCcceeecccCCCeEEeCCCC----cCCCCeecCC
Confidence 56778899997 8887642 26889776 4599875433
No 106
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.33 E-value=77 Score=28.62 Aligned_cols=12 Identities=42% Similarity=1.209 Sum_probs=8.7
Q ss_pred CCCCCCCCCcEE
Q 035625 273 LGRCPICSGPLR 284 (954)
Q Consensus 273 l~~Cp~C~g~l~ 284 (954)
-++||.||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 447999977654
No 107
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.38 E-value=24 Score=30.68 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=22.0
Q ss_pred ccchhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 112 QTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 112 ks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..+...|.+|.+.|.-+++ |.. .+ .-||+.||.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~-v~a-------~~-~~~H~~CF~ 44 (91)
T 2d8y_A 12 APARETCVECQKTVYPMER-LLA-------NQ-QVFHISCFR 44 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSE-EEC-------SS-SEEETTTCB
T ss_pred CCCCCcCccCCCccCCcee-EEE-------CC-CEECCCCCe
Confidence 3456789999999986553 321 12 345889997
No 108
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.31 E-value=22 Score=28.76 Aligned_cols=28 Identities=32% Similarity=0.663 Sum_probs=19.0
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|. ++. |.. .+. -||+.||.
T Consensus 6 ~~C~~C~~~I~-~~~-~~a-------~~~-~~H~~CF~ 33 (66)
T 1nyp_A 6 PICGACRRPIE-GRV-VNA-------MGK-QWHVEHFV 33 (66)
T ss_dssp CEETTTTEECC-SCE-ECC-------TTS-BEETTTCB
T ss_pred CCCcccCCEec-ceE-EEE-------Ccc-ccccCcCE
Confidence 46999999998 653 321 123 44899997
No 109
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.17 E-value=46 Score=27.04 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=20.9
Q ss_pred ccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccc
Q 035625 14 KSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLR 58 (954)
Q Consensus 14 kS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~ 58 (954)
.++...|.+|++.|.- +. | .+ . ..-||..||.=
T Consensus 2 s~~~~~C~~C~~~I~~-~~-~--~a-----~---~~~~H~~CF~C 34 (69)
T 2cur_A 2 SSGSSGCVKCNKAITS-GG-I--TY-----Q---DQPWHADCFVC 34 (69)
T ss_dssp CCCCCCCSSSCCCCCT-TC-E--EE-----T---TEEECTTTTBC
T ss_pred CCCcCCCcccCCEeCc-ce-E--EE-----C---ccccccCcCEE
Confidence 3556789999999973 31 2 11 1 23458889863
No 110
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.03 E-value=34 Score=28.79 Aligned_cols=22 Identities=36% Similarity=1.005 Sum_probs=17.1
Q ss_pred CCCCCCCCCcEEEeC--ceEEEec
Q 035625 273 LGRCPICSGPLRYSG--GIYRCRG 294 (954)
Q Consensus 273 l~~Cp~C~g~l~~~~--~~Y~C~G 294 (954)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKG 31 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCC
Confidence 357999999999984 5677753
No 111
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.89 E-value=69 Score=31.18 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCChhHHHHHhhhhh
Q 035625 221 AQTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADGM 268 (954)
Q Consensus 221 ~Q~~~~w~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~ 268 (954)
++...+|+ ...|. .+++.+||++|...+..+.|-+..|++|+...+
T Consensus 50 ~~i~~l~~-~g~L~-kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l 95 (151)
T 1jjr_A 50 EELKTHIS-KGTLG-KFTVPMLKEACRAYGLKSGLKKQELLEALTKHF 95 (151)
T ss_dssp HHHHHHHH-HTCTT-SSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTT
T ss_pred HHHHHHHH-cCcHH-hccHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Confidence 35555663 33353 599999999999999888999999999998653
No 112
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.82 E-value=27 Score=29.58 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=19.3
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
.+|.+|.+.|.-++..|.. .+..| |+.||.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a-------~~~~~-H~~CF~ 45 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY-------EDRHF-HEGCFR 45 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC-------SSCCC-BTTTSB
T ss_pred CcCccCCCccccCcEEEEe-------CCccc-cccCCe
Confidence 4799999999843333321 12334 899997
No 113
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=26.38 E-value=19 Score=37.63 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=21.5
Q ss_pred hcCCCCCCCCCCC--cEE-EeCceEEEecCccCccccccc
Q 035625 269 MFGALGRCPICSG--PLR-YSGGIYRCRGYQSAWSKCSYS 305 (954)
Q Consensus 269 ~fG~l~~Cp~C~g--~l~-~~~~~Y~C~G~~sewtkC~~~ 305 (954)
-|+.-.+||.|+| .|. |+.+.|+|. .|.+.
T Consensus 10 ~~~~~~~CP~Cg~~d~~~~~~dg~~~C~-------~Cg~~ 42 (255)
T 1nui_A 10 VFLYHIPCDNCGSSDGNSLFSDGHTFCY-------VCEKW 42 (255)
T ss_dssp CEEEEECCSSSCCSSCEEEETTSCEEET-------TTCCE
T ss_pred ceecCCcCCCCCCCCCceEeCCCCeecc-------cCCCc
Confidence 3777889999965 555 445579996 67764
No 114
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.98 E-value=14 Score=35.99 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCChhHHHHHhhhh
Q 035625 222 QTKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDHCADG 267 (954)
Q Consensus 222 Q~~~~w~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 267 (954)
|....| -...|. .|++.+|+++|...+..+.|.+.+|++|+.-.
T Consensus 105 ei~~~~-~~g~l~-klTV~~Lk~~l~~~gl~~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 105 ELKTHI-SKGTLG-KFTVPMLKEACRAYGLKSGLKKQELLEALTKH 148 (151)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHH-hcCccc-cccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 445566 245565 49999999999999988899999999998643
No 115
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.90 E-value=23 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=21.4
Q ss_pred cchhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 113 TSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 113 s~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
+....|.+|.+.|.-++..|... ...||+.||.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~--------~~~~H~~CF~ 35 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYK--------NRFWHDTCFR 35 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEET--------TEEEETTTCC
T ss_pred CCCCcCcccCCcccCCceEEEEC--------ccChhhcCCc
Confidence 44567999999997533333221 1356899997
No 116
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.87 E-value=35 Score=28.01 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=22.0
Q ss_pred ccCCcccccccccccC--CCeEEEEEeeccccCCCCceeeecccccc
Q 035625 14 KSGRSSCRSCKSNIEK--EALRLGKMVQSSQFDGFMPMWNHASCVLR 58 (954)
Q Consensus 14 kS~Ra~Ck~C~~~I~k--g~LRig~~~~~~~~dg~~~~W~H~~Cf~~ 58 (954)
.+....|.+|++.|.- ++..|. ..| +-||..||.=
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~-------a~~---~~wH~~CF~C 38 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYIS-------FEE---RQWHNDCFNC 38 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEE-------CSS---CEECTTTCBC
T ss_pred CCCCCCCcCCCccccCCCCcceEE-------ECC---cccCcccCEe
Confidence 4566789999999985 332221 122 2457889864
No 117
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.27 E-value=21 Score=30.24 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=20.3
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...|.+|.+.|..+++ |... ..-||+.||.
T Consensus 7 ~~~C~~C~~~I~~~~~-~~a~--------~~~~H~~CF~ 36 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE-VQCD--------GRSFHRCCFL 36 (81)
T ss_dssp -CBCSSSCCBCSSTTE-EEET--------TEEEESSSEE
T ss_pred CCcCcCcCccccCcee-EEeC--------CcccccccCc
Confidence 4579999999987763 3221 1356899997
No 118
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=57 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=21.2
Q ss_pred cCCcccccccccccCCCeEEEEEeeccccCCCCceeeeccccccc
Q 035625 15 SGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLRK 59 (954)
Q Consensus 15 S~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~~ 59 (954)
++...|.+|++.|. ++. | . .. -+-||..||.=.
T Consensus 3 ~~~~~C~~C~~~I~-~~~-~----~---a~---~~~~H~~CF~C~ 35 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRV-I----K---AM---NNSWHPECFRCD 35 (70)
T ss_dssp CCSSBCSSSCCBCC-SCC-E----E---ET---TEEECTTTSBCS
T ss_pred CCCCcCccCCCEec-ceE-E----E---EC---cccccccCCEeC
Confidence 56678999999997 431 1 1 11 235588998643
No 119
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=24.38 E-value=41 Score=30.58 Aligned_cols=32 Identities=19% Similarity=0.563 Sum_probs=21.5
Q ss_pred ccccccccccCCCeEEEEEeeccccCCCCceeeeccccc
Q 035625 19 SCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVL 57 (954)
Q Consensus 19 ~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~ 57 (954)
.|..|+++...+.. |++ =|+....|||..|+-
T Consensus 5 ~C~iC~~p~~~~~~----mi~---Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 5 PCGACRSEVNDDQD----AIL---CEASCQKWFHRECTG 36 (105)
T ss_dssp BCTTTCSBCCTTSC----EEE---CTTTTCCEEEGGGTT
T ss_pred CCCCCCCccCCCCC----EEE---ecCCcccccccccCC
Confidence 58889988754432 332 243567999999964
No 120
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=27 Score=29.15 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=19.4
Q ss_pred hhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 117 TCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 117 ~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
.|.+|.+.|.-++. |... ...||+.||.
T Consensus 2 ~C~~C~~~I~~~~~-v~a~--------~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAER-VTSL--------GKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGE-EEET--------TEEEETTTCB
T ss_pred cCCCCCCEEECceE-EEEC--------CccccCCCCC
Confidence 59999999986664 3221 1356889997
No 121
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.64 E-value=27 Score=29.17 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=19.3
Q ss_pred hhhhhhcccccc---cceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMK---GEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~K---ge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.- ++-.|.. .+ ..+|+.||.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a-------~~-~~~H~~CF~ 48 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY-------EG-QSWHDYCFH 48 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE-------TT-EEEETTTCB
T ss_pred ccCcccCCcccCCCCCceeEEE-------Cc-ceeCcccCE
Confidence 579999999984 2233321 11 345899997
No 122
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.23 E-value=31 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=19.7
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...|.+|.+.|..++.-. . . .+.||..||.
T Consensus 15 ~~~C~~C~~~I~~~e~v~-a-------~-~~~wH~~CF~ 44 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC-V-------N-GHFFHRSCFR 44 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC-B-------T-TBCCBTTTCB
T ss_pred CCCCcccCCCcccceEEE-E-------C-CCeeCCCcCE
Confidence 457999999997554311 1 1 2356899997
No 123
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.87 E-value=26 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=19.7
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.-++.-|.. .+. -||+.||.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a-------~~~-~~H~~CF~ 38 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRV-------KDK-VYHLECFK 38 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCC-------SSC-CCCTTTCB
T ss_pred CcccCCCCeecCCceEEEE-------CCc-ccccccCc
Confidence 3799999999875533322 122 34889997
No 124
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=22.28 E-value=35 Score=27.46 Aligned_cols=26 Identities=27% Similarity=0.726 Sum_probs=17.6
Q ss_pred CCCCCCCCCcEE--EeCceEEEecCccCccccccc
Q 035625 273 LGRCPICSGPLR--YSGGIYRCRGYQSAWSKCSYS 305 (954)
Q Consensus 273 l~~Cp~C~g~l~--~~~~~Y~C~G~~sewtkC~~~ 305 (954)
..-||.|+.-+. -..+.|+| .+|.|+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C-------~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSC-------GRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEEC-------TTTCCC
T ss_pred cccCcCCCCceeEeccCCEEEC-------CCCCCE
Confidence 467999975333 33568999 567665
No 125
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=22.15 E-value=1.1e+02 Score=32.61 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHcC----HHHHHHHHHHhccCc--CCCCccCCCHHHHHHHHHHHHHHHHH
Q 035625 607 LAPALVELMKMLFN----VETYRAAMMEFDINM--SEMPLGKLSKNNIQKGFEALTEIQNL 661 (954)
Q Consensus 607 L~~~Vq~l~~~Ifd----~~~~~~~m~~~~~d~--~kmPLGkLSk~qI~~a~~vL~ei~~~ 661 (954)
|...+..|+..+|. +..+|.+|..+|++. -..||..|+.++.++-.++|.++...
T Consensus 222 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 282 (288)
T 2nuw_A 222 LQELINRLADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLKRK 282 (288)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44556667776653 456788888888864 58999999999888887877776543
No 126
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=27 Score=29.09 Aligned_cols=31 Identities=29% Similarity=0.677 Sum_probs=19.4
Q ss_pred hhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 115 RATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 115 Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
...|.+|.+.|.-++.-+.. .+ ..||+.||.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a-------~~-~~~H~~CF~ 41 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS-------NG-ELYHEQCFV 41 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE-------TT-EEECTTTCC
T ss_pred CCCchhcCCccCCCceEEEe-------Cc-cEeccccCe
Confidence 35799999999743322211 11 345899997
No 127
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.86 E-value=55 Score=28.31 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=23.1
Q ss_pred cccCCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccc
Q 035625 13 AKSGRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLR 58 (954)
Q Consensus 13 AkS~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~ 58 (954)
...+...|.+|++.|..+++ | . ..| . -||..||.=
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~-v--~-----a~~--~-~~H~~CF~C 45 (91)
T 2d8y_A 11 QAPARETCVECQKTVYPMER-L--L-----ANQ--Q-VFHISCFRC 45 (91)
T ss_dssp CSSSSCBCTTTCCBCCTTSE-E--E-----CSS--S-EEETTTCBC
T ss_pred CCCCCCcCccCCCccCCcee-E--E-----ECC--C-EECCCCCee
Confidence 34567899999999987663 2 1 122 2 448888864
No 128
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=20.54 E-value=2.1e+02 Score=30.15 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCCcEEEEEeCCCcc--hhHHHHHhhh-------c---CCeeEEecCCCCCCCChHHHHHHhcCC--CeechhhHHHHhh
Q 035625 369 LGDLRVSFSRLPKES--KCVSCCLINE-------S---AETNCLVLGGVPDDPDAEMRKARKMKV--PIVREDYLVDCFK 434 (954)
Q Consensus 369 l~~~~i~i~G~~~~~--~~~~k~~I~~-------~---~~~thlI~t~~e~~~~~~vk~a~~~~i--~IVs~dwL~d~~~ 434 (954)
-..|+.++.|=...+ ..+.+.+-.- . ..++|||+-.-. +..|-=.|-+.+= .||+.+||.+|++
T Consensus 20 ~~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkil--RT~KFL~sLa~~P~~~il~p~FI~~~Lk 97 (256)
T 3t7k_A 20 NYDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKIL--RTEKFLKSLSFEPLKFALKPEFIIDLLK 97 (256)
T ss_dssp CCCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCC--CBHHHHHHTTSTTCCEEECTHHHHHHHH
T ss_pred CeeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchh--hHHHHHHHhccCccceEeCHHHHHHHHH
Confidence 378999999977222 2233332111 1 468899886644 2333333334433 3999999999997
Q ss_pred c---CC------CCCCCccccc
Q 035625 435 R---QK------KLPFDLYKVE 447 (954)
Q Consensus 435 ~---~~------~~~~~~y~l~ 447 (954)
. ++ .++.++|.+.
T Consensus 98 ~ih~~~~~~~~~~l~~~dY~L~ 119 (256)
T 3t7k_A 98 QIHSKKDKLSQININLFDYEIN 119 (256)
T ss_dssp HHC-------CCCCCSSTTBCT
T ss_pred HhhcCCcccccccCChhhccCC
Confidence 7 55 5678889875
No 129
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=33 Score=27.96 Aligned_cols=28 Identities=32% Similarity=0.707 Sum_probs=18.3
Q ss_pred hhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 116 ATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 116 s~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
..|.+|.+.|.-..|+. .+ .-||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~a---------~~-~~~H~~CF~ 33 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTY---------RE-QPWHKECFV 33 (70)
T ss_dssp CBCSSSCCBCCSSEEES---------SS-SEEETTTSB
T ss_pred CCCcccCCeeccceEEE---------Cc-cccCCCCCc
Confidence 46999999997433222 12 244899997
No 130
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=78 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=22.5
Q ss_pred EcccCCcccccccccccC---CCeEEEEEeeccccCCCCceeeecccccc
Q 035625 12 YAKSGRSSCRSCKSNIEK---EALRLGKMVQSSQFDGFMPMWNHASCVLR 58 (954)
Q Consensus 12 YAkS~Ra~Ck~C~~~I~k---g~LRig~~~~~~~~dg~~~~W~H~~Cf~~ 58 (954)
|.+.--..|.+|++.|.- +..+|- .. ..-||..||.=
T Consensus 10 y~~~~~~~C~~C~~~I~~~g~~~~~~~-------a~---~~~~H~~CF~C 49 (77)
T 2egq_A 10 YKNFVAKKCAGCKNPITGFGKGSSVVA-------YE---GQSWHDYCFHC 49 (77)
T ss_dssp CCSCCCCCCSSSCCCCCCCSSCCCEEE-------ET---TEEEETTTCBC
T ss_pred hchhhCccCcccCCcccCCCCCceeEE-------EC---cceeCcccCEe
Confidence 344444689999999984 333331 11 23458899863
No 131
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.13 E-value=1.4e+02 Score=31.78 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHc---C-HHHHHHHHHHhccCc--CCCCccCCCHHHHHHHHHHHHHHHHHH
Q 035625 607 LAPALVELMKMLF---N-VETYRAAMMEFDINM--SEMPLGKLSKNNIQKGFEALTEIQNLL 662 (954)
Q Consensus 607 L~~~Vq~l~~~If---d-~~~~~~~m~~~~~d~--~kmPLGkLSk~qI~~a~~vL~ei~~~l 662 (954)
|...+..|+..+| + +..+|.+|..+|++. -..||..|+.++.++-.++|.++...+
T Consensus 224 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 285 (293)
T 1w3i_A 224 LQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRAKL 285 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666777666 2 456888898888864 589999999999888888888776443
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.10 E-value=73 Score=27.43 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=20.4
Q ss_pred cccchhhhhhhcccccccceeecccCCCCCCCCcccccccccc
Q 035625 111 SQTSRATCRHCSKKIMKGEVRISAKPDGQGTKGLAWHHANCFL 153 (954)
Q Consensus 111 Aks~Rs~Ck~C~~kI~Kge~Ri~~k~~~~~~~~~~w~H~~Cf~ 153 (954)
+......|.+|.+.|. |+. |.. .+ .-||+.||.
T Consensus 21 ~~~~~~~C~~C~~~I~-~~~-v~a-------~~-~~~H~~CF~ 53 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIR-GPF-LVA-------LG-KSWHPEEFN 53 (90)
T ss_dssp TTTCCCBBSSSCCBCC-SCE-EEE-------TT-EEECTTTCB
T ss_pred CCCCCCCCccCCCEec-ceE-EEE-------CC-ccccccCCc
Confidence 3344567999999995 442 211 11 345899997
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.04 E-value=70 Score=27.08 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=21.3
Q ss_pred CCcccccccccccCCCeEEEEEeeccccCCCCceeeecccccc
Q 035625 16 GRSSCRSCKSNIEKEALRLGKMVQSSQFDGFMPMWNHASCVLR 58 (954)
Q Consensus 16 ~Ra~Ck~C~~~I~kg~LRig~~~~~~~~dg~~~~W~H~~Cf~~ 58 (954)
+...|.+|++.|..++. | .+ . ..-||..||.=
T Consensus 14 ~~~~C~~C~~~I~~~~~-v--~a-----~---~~~wH~~CF~C 45 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQS-L--LA-----L---DKQWHVSCFKC 45 (80)
T ss_dssp SCSCCTTTCCCCSSSCC-E--EE-----T---TEEECTTTCBC
T ss_pred CCCCCcCcCCeeCCCeE-E--EE-----C---CcccccccCCc
Confidence 46689999999986653 1 11 1 23458899864
Done!