BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035626
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GER|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4GER|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
Length = 304
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 323 RNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSK 382
V E+T+N+E+ G+ L+++ + G ++ +W++G +Y L S ++P+
Sbjct: 139 HGVTEYTSNLEYYGESGALNEAFSDVIGNDIQRKNWLVGDDIYTPNIAGDALRSMSNPTL 198
Query: 383 RSRLENYMNRET 394
+ ++Y N T
Sbjct: 199 YDQPDHYSNLYT 210
>pdb|3FCZ|A Chain A, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
pdb|3FCZ|B Chain B, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
Length = 222
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P S +VL +G L ++ W
Sbjct: 8 TGTISISQLNKNVWVHTELGSFNGEAVP--SSGLVLNTSKGLVLVDSSW 54
>pdb|2UYX|A Chain A, Metallo-Beta-Lactamase (1bc2) Single Point Mutant D120s
Length = 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 298 ARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLK 354
A Q+ TV + +GTI Q N+NV+ T FNG+ P + +VL +G L
Sbjct: 1 ASQKVEKTVIKNE--TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLV 56
Query: 355 NTDW 358
++ W
Sbjct: 57 DSSW 60
>pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|2BC2|B Chain B, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|3BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Monoclinic Crystal Form
pdb|3I15|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Fully Oxidized
Length = 227
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9 C168S
Mutant
Length = 227
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|3KNR|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNS|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
Length = 227
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|2BFZ|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BFZ|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BG6|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG6|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG8|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents.
pdb|2BGA|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BGA|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized
Length = 227
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1MQO|A Chain A, Metallo-Beta-Lactamase Bcii Cd Substituted From Bacillus
Cereus At 1.35 Angstroms Resolution
pdb|3I11|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus
pdb|3I13|A Chain A, Bacillus Cereus Zn-dependent Metallo-beta-lactamase At Ph
5.8
Length = 227
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|2BFK|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFK|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFL|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BFL|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BG2|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG2|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG8|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents
Length = 227
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 313 SGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVL---RGCQLKNTDW 358
+GTI Q N+NV+ T FNG+ P + +VL +G L ++ W
Sbjct: 13 TGTISISQLNKNVWVHTELGSFNGEAVP--SNGLVLNTSKGLVLVDSSW 59
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|E Chain E, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
Length = 160
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 265 PCDVVLLGTSDPSGIAYIQTMNLDGE 290
P D++ +G P + Y +T+N+DG+
Sbjct: 64 PTDIITVGGVGPEPLTYTETVNIDGD 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,419,222
Number of Sequences: 62578
Number of extensions: 476567
Number of successful extensions: 743
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 16
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)