Query 035626
Match_columns 457
No_of_seqs 244 out of 1723
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03190 aminophospholipid tra 100.0 4.3E-62 9.2E-67 560.2 31.3 303 128-430 67-369 (1178)
2 KOG0206 P-type ATPase [General 100.0 3.2E-59 7E-64 524.5 20.9 306 127-434 10-319 (1151)
3 TIGR01652 ATPase-Plipid phosph 100.0 1.5E-56 3.3E-61 514.5 26.5 280 148-431 1-284 (1057)
4 KOG0210 P-type ATPase [Inorgan 100.0 7.7E-46 1.7E-50 389.4 20.6 279 130-413 62-345 (1051)
5 TIGR01106 ATPase-IIC_X-K sodiu 100.0 7.1E-30 1.5E-34 292.4 20.9 236 135-413 36-285 (997)
6 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.3E-28 2.7E-33 280.9 22.8 223 138-412 63-300 (941)
7 TIGR01523 ATPase-IID_K-Na pota 100.0 4.9E-29 1.1E-33 285.9 18.6 233 136-411 27-300 (1053)
8 COG0474 MgtA Cation transport 100.0 1.3E-28 2.8E-33 279.5 21.6 233 139-412 48-287 (917)
9 PRK10517 magnesium-transportin 100.0 1.6E-28 3.6E-33 278.1 22.1 234 135-413 67-312 (902)
10 TIGR01647 ATPase-IIIA_H plasma 100.0 2.6E-28 5.6E-33 272.5 20.8 217 139-414 5-227 (755)
11 TIGR01522 ATPase-IIA2_Ca golgi 100.0 5.2E-28 1.1E-32 274.3 21.9 229 138-411 27-263 (884)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 6.6E-28 1.4E-32 272.6 20.8 233 135-413 33-277 (867)
13 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2.6E-27 5.7E-32 269.4 22.3 208 168-412 1-219 (917)
14 KOG0202 Ca2+ transporting ATPa 99.9 8.1E-28 1.7E-32 259.4 10.4 228 140-411 28-261 (972)
15 PF00122 E1-E2_ATPase: E1-E2 A 99.9 2E-26 4.3E-31 221.5 18.2 167 204-415 2-175 (230)
16 TIGR01657 P-ATPase-V P-type AT 99.9 2.4E-26 5.1E-31 264.8 21.9 223 140-403 144-379 (1054)
17 PRK15122 magnesium-transportin 99.9 2.5E-26 5.4E-31 260.5 21.0 246 135-411 45-308 (903)
18 KOG0204 Calcium transporting A 99.9 1.8E-24 3.9E-29 233.6 13.6 221 139-411 123-354 (1034)
19 KOG0205 Plasma membrane H+-tra 99.9 3E-22 6.6E-27 211.2 8.6 207 136-398 37-252 (942)
20 TIGR01512 ATPase-IB2_Cd heavy 99.9 5.6E-21 1.2E-25 206.4 18.5 163 198-414 18-189 (536)
21 KOG0208 Cation transport ATPas 99.8 5.5E-20 1.2E-24 201.5 21.6 217 143-394 168-390 (1140)
22 PRK01122 potassium-transportin 99.8 4.3E-20 9.3E-25 202.9 20.4 187 170-404 29-232 (679)
23 PRK14010 potassium-transportin 99.8 4.5E-20 9.7E-25 202.6 18.9 180 171-398 29-226 (673)
24 TIGR01525 ATPase-IB_hvy heavy 99.8 4E-20 8.6E-25 200.5 17.9 163 198-414 18-190 (556)
25 KOG0203 Na+/K+ ATPase, alpha s 99.8 9.5E-21 2.1E-25 204.8 9.2 229 143-415 66-309 (1019)
26 PRK11033 zntA zinc/cadmium/mer 99.8 1.6E-19 3.4E-24 201.7 19.0 159 206-415 211-378 (741)
27 TIGR01494 ATPase_P-type ATPase 99.8 2.6E-19 5.6E-24 191.7 19.2 163 200-414 3-169 (499)
28 TIGR01497 kdpB K+-transporting 99.8 3.3E-19 7.1E-24 195.7 20.4 183 170-400 28-229 (675)
29 TIGR01511 ATPase-IB1_Cu copper 99.8 1.6E-19 3.5E-24 196.0 16.9 151 212-413 65-225 (562)
30 PRK10671 copA copper exporting 99.8 2.7E-18 5.9E-23 194.3 19.5 156 208-414 293-457 (834)
31 COG2217 ZntA Cation transport 99.8 1.2E-17 2.5E-22 184.2 16.7 163 204-417 177-349 (713)
32 KOG0209 P-type ATPase [Inorgan 99.7 3.5E-17 7.7E-22 176.6 11.2 237 145-421 173-421 (1160)
33 KOG0207 Cation transport ATPas 99.6 4.2E-15 9.2E-20 163.2 14.7 154 213-417 353-516 (951)
34 COG2216 KdpB High-affinity K+ 99.1 9.2E-10 2E-14 115.3 14.7 119 233-399 105-227 (681)
35 smart00831 Cation_ATPase_N Cat 96.9 0.00061 1.3E-08 52.7 2.1 49 137-189 12-61 (64)
36 PF00690 Cation_ATPase_N: Cati 96.6 0.00066 1.4E-08 53.5 0.7 45 139-187 24-69 (69)
37 KOG0210 P-type ATPase [Inorgan 88.8 2 4.3E-05 48.1 9.0 108 156-263 90-207 (1051)
38 KOG4383 Uncharacterized conser 76.5 5.5 0.00012 44.6 6.2 37 237-273 161-197 (1354)
39 TIGR01523 ATPase-IID_K-Na pota 64.7 9.6 0.00021 45.3 5.4 34 239-273 138-171 (1053)
40 TIGR01647 ATPase-IIIA_H plasma 55.3 13 0.00029 42.5 4.3 93 171-275 30-122 (755)
41 TIGR01517 ATPase-IIB_Ca plasma 49.5 16 0.00035 42.9 3.8 19 240-258 187-205 (941)
42 PF13253 DUF4044: Protein of u 47.4 63 0.0014 22.4 4.9 20 380-399 3-22 (35)
43 smart00831 Cation_ATPase_N Cat 42.9 62 0.0014 24.4 5.0 39 372-410 23-61 (64)
44 TIGR01522 ATPase-IIA2_Ca golgi 42.8 29 0.00064 40.5 4.6 33 239-272 137-169 (884)
45 PRK11507 ribosome-associated p 40.5 34 0.00074 27.4 3.2 26 235-260 38-63 (70)
46 PF12791 RsgI_N: Anti-sigma fa 38.7 51 0.0011 24.5 3.9 37 230-266 4-42 (56)
47 PF13275 S4_2: S4 domain; PDB: 35.4 19 0.00041 28.4 1.0 24 235-258 34-57 (65)
48 TIGR01657 P-ATPase-V P-type AT 34.4 67 0.0014 38.4 5.8 108 166-289 162-272 (1054)
49 PRK10517 magnesium-transportin 32.9 63 0.0014 38.0 5.2 32 239-271 185-216 (902)
50 COG1188 Ribosome-associated he 31.0 51 0.0011 28.2 3.0 28 236-264 36-63 (100)
51 TIGR01524 ATPase-IIIB_Mg magne 30.3 71 0.0015 37.3 5.0 34 239-273 151-184 (867)
52 PF03120 DNA_ligase_OB: NAD-de 28.8 29 0.00062 28.7 1.1 25 246-270 46-71 (82)
53 KOG0208 Cation transport ATPas 28.4 1.4E+02 0.003 35.4 6.7 176 204-417 217-409 (1140)
54 PF09926 DUF2158: Uncharacteri 25.8 44 0.00095 25.3 1.5 13 251-263 2-14 (53)
55 PF12148 DUF3590: Protein of u 25.7 42 0.00091 27.9 1.5 17 243-259 59-75 (85)
56 PRK05585 yajC preprotein trans 25.3 76 0.0017 27.3 3.1 14 248-261 51-64 (106)
57 TIGR00739 yajC preprotein tran 25.0 69 0.0015 26.4 2.7 13 249-261 37-49 (84)
58 PF02699 YajC: Preprotein tran 24.8 79 0.0017 25.8 3.0 14 248-261 35-48 (82)
59 PF00690 Cation_ATPase_N: Cati 23.5 84 0.0018 24.2 2.8 36 372-407 33-68 (69)
60 TIGR02754 sod_Ni_protease nick 23.4 1.1E+02 0.0023 24.8 3.6 26 249-274 11-41 (90)
61 COG2501 S4-like RNA binding pr 22.5 99 0.0021 25.0 3.0 26 235-260 38-63 (73)
62 PF04530 Viral_Beta_CD: Viral 21.8 44 0.00095 29.6 1.0 21 20-40 4-24 (122)
63 PF00122 E1-E2_ATPase: E1-E2 A 21.1 42 0.00091 31.8 0.8 60 207-272 2-61 (230)
64 smart00306 HintN Hint (Hedgeho 21.1 1.1E+02 0.0024 24.5 3.3 27 233-259 73-99 (100)
65 PRK14584 hmsS hemin storage sy 20.6 3.3E+02 0.0072 25.2 6.4 39 151-189 3-41 (153)
No 1
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=4.3e-62 Score=560.24 Aligned_cols=303 Identities=63% Similarity=1.109 Sum_probs=277.2
Q ss_pred CCCCeEEEeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHH
Q 035626 128 EENPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFV 207 (457)
Q Consensus 128 ~~~~r~i~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~v 207 (457)
..+.|.|++|++...+.+.+|++|.|+|+|||+|+|||++||+||++++|+|||+++|+|++|.+++.+++++++||++|
T Consensus 67 ~~~~r~i~~~~~~~~~~~~~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~v 146 (1178)
T PLN03190 67 DEDARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAFV 146 (1178)
T ss_pred cCCceEEEcCCCCcccccccCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHHH
Confidence 45689999998754444567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccc
Q 035626 208 LFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNL 287 (457)
Q Consensus 208 l~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~L 287 (457)
++++++++++||++|+++|+++|+++++|+++|++++++|++|+|||||+|++||.+|||++||++++++|.|+|||++|
T Consensus 147 l~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~L 226 (1178)
T PLN03190 147 LLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINL 226 (1178)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEec
Q 035626 288 DGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAG 367 (457)
Q Consensus 288 dGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG 367 (457)
||||+||.|.+.+.+.........++|.|+||.||+++|.|.|++.++++..+++.+|+|+|||.|+||+|++|+|||||
T Consensus 227 dGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG 306 (1178)
T PLN03190 227 DGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCG 306 (1178)
T ss_pred CCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEec
Confidence 99999999998766531111125678999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccceee
Q 035626 368 QETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYR 430 (457)
Q Consensus 368 ~dTKi~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~~~~~~~~~~~wy~ 430 (457)
+|||+++|...++.|+|++|+++|+++++++++++++|++++++..+|..+..+..++.+||+
T Consensus 307 ~dTK~~~N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~ 369 (1178)
T PLN03190 307 RETKAMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDTIPFYR 369 (1178)
T ss_pred hhhhHhhcCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 999999999999999999999999999999999999999999999888765433222334554
No 2
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=3.2e-59 Score=524.53 Aligned_cols=306 Identities=46% Similarity=0.782 Sum_probs=280.2
Q ss_pred CCCCCeEEEeCCCccc-cccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHH
Q 035626 127 HEENPRSIYINDPRKT-NDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLL 205 (457)
Q Consensus 127 ~~~~~r~i~~n~~~~~-~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl 205 (457)
.+..+|+++.|++... .+..+|++|+|+|+|||+++|+|++||+||+|++|+|||+++|++++| +++++++++++||+
T Consensus 10 ~~~~~R~~~~n~~~~~~~~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~~~~~~~~~~pl~ 88 (1151)
T KOG0206|consen 10 RPGFSRVVYCNDPLPFEAPQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIP-LSPFNPYTTLVPLL 88 (1151)
T ss_pred cCCCceEEeCCCCCcchhhhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccCccceeecee
Confidence 3457899999997422 244589999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccceeEEEeCC-EEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEee
Q 035626 206 FVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSD-QFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQT 284 (457)
Q Consensus 206 ~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g-~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdt 284 (457)
+|+.++++||++||++|+++|+++|+++|+|++++ .+++..|++|+|||+|++..++.+|||++||++|+++|.|||+|
T Consensus 89 ~vl~~t~iKd~~eD~rR~~~D~~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT 168 (1151)
T KOG0206|consen 89 FVLGITAIKDAIEDYRRHKQDKEVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVET 168 (1151)
T ss_pred eeehHHHHHHHHhhhhhhhccHHhhcceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEE
Confidence 99999999999999999999999999999999953 39999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccccccc-cccccc-cccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEE
Q 035626 285 MNLDGESNLKTRYARQETA-STVFEG-SIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGV 362 (457)
Q Consensus 285 s~LdGES~pk~K~~~~~t~-l~~~~~-~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~Gv 362 (457)
++||||||+|.|++...+. ....+. ..++|.|+||.||.++|.|.|++.+.++..|++.+|+|+|||+|+||+|++|+
T Consensus 169 ~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~ 248 (1151)
T KOG0206|consen 169 ANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGV 248 (1151)
T ss_pred eecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEE
Confidence 9999999999999987775 322232 78899999999999999999999988766699999999999999999999999
Q ss_pred EEEecchhHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccceeeeccc
Q 035626 363 VVYAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRKLYF 434 (457)
Q Consensus 363 VV~TG~dTKi~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~~~~~~~~~~~wy~~~~~ 434 (457)
||+||+|||+|+|+..++.|++.+++.+|..+..++++++++|++++++..+|.+...... ...||+.+..
T Consensus 249 vv~tG~dtK~~~n~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~ 319 (1151)
T KOG0206|consen 249 VVFTGHDTKLMQNSGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGRHN-GEWWYLSPSE 319 (1151)
T ss_pred EEEcCCcchHHHhcCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeeccccc-CchhhhcCch
Confidence 9999999999999999999999999999999999999999999999999999998654311 1478886654
No 3
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1.5e-56 Score=514.49 Aligned_cols=280 Identities=50% Similarity=0.836 Sum_probs=261.6
Q ss_pred CcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 035626 148 FTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDR 227 (457)
Q Consensus 148 yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~ 227 (457)
|++|.|+|+||++|+|+|++||+||++++|+|||+++|+|++|.+++.+++++++||+++++++++++++||++||++|+
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~ 80 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK 80 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEeC-CEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccccc-cc
Q 035626 228 NENNREALVLQS-DQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETA-ST 305 (457)
Q Consensus 228 ~iN~~~~~Vlr~-g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~-l~ 305 (457)
++|++.++|+|+ |++++++|+||+|||||+|++||.||||++||++++++|.|+||||+|||||+|+.|++.+.+. ..
T Consensus 81 ~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~ 160 (1057)
T TIGR01652 81 EVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKML 160 (1057)
T ss_pred HHhCcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccC
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999876654 22
Q ss_pred cccc-cccceeeeecCCCCCceeeeeEEEecC-ccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHHhhcCCCCCC
Q 035626 306 VFEG-SIVSGTIKCEQPNRNVYEFTANMEFNG-QKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKR 383 (457)
Q Consensus 306 ~~~~-~~~~g~I~~e~pn~~l~~F~Gtl~l~g-~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~n~~~~~~K~ 383 (457)
.... .+++|.|+|+.|+.++|.|.|++.+++ +..|++.+|++||||.|+||||++|+|+|||+|||+++|...++.|+
T Consensus 161 ~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n~~~~~~k~ 240 (1057)
T TIGR01652 161 DEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRNATQAPSKR 240 (1057)
T ss_pred ChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhcCCCCcccc
Confidence 2222 568899999999999999999999987 77899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccceeee
Q 035626 384 SRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKDRLDTLPYYRK 431 (457)
Q Consensus 384 S~le~~ln~~i~~l~~illii~li~~i~~~~~~~~~~~~~~~~~wy~~ 431 (457)
|++|+++|+++.+++++++++|++++++..+|...... ..||+.
T Consensus 241 s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~~~~----~~~yl~ 284 (1057)
T TIGR01652 241 SRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDAHGK----DLWYIR 284 (1057)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecccCC----Ccccee
Confidence 99999999999999999999999999988888754332 369874
No 4
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-46 Score=389.42 Aligned_cols=279 Identities=32% Similarity=0.464 Sum_probs=250.2
Q ss_pred CCeEEEeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHH
Q 035626 130 NPRSIYINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLF 209 (457)
Q Consensus 130 ~~r~i~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~ 209 (457)
..|++.+.-. ...++.+|++|.+++.||++++|+|..|++||+.+.|+|||++++.|++|.+.-..+.+++.|+.||+.
T Consensus 62 ~~rt~~~~~~-~~~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~ 140 (1051)
T KOG0210|consen 62 HGRTVNISFG-PHYRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLT 140 (1051)
T ss_pred cCceeecccC-CCcccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHH
Confidence 3455554432 223556899999999999999999999999999999999999999999998887888899999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccceeEEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeecccc
Q 035626 210 VTAIKDGYEDWRRHRSDRNENNREALVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLD 288 (457)
Q Consensus 210 is~ike~~ed~kr~k~d~~iN~~~~~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~Ld 288 (457)
++++|+++||++|++.|+..|++.++++. +|... .++++|+|||+|.+++|++||||++||.+|+.+|.|+|.|..||
T Consensus 141 itl~keavdd~~r~~rd~~~Nse~y~~ltr~~~~~-~~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLD 219 (1051)
T KOG0210|consen 141 ITLIKEAVDDLKRRRRDRELNSEKYTKLTRDGTRR-EPSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLD 219 (1051)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhheeeccCCccc-ccccccccccEEEEecCCcCCcceEEEEccCCCCceEEeccccC
Confidence 99999999999999999999999999984 55444 49999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccc-cccccc-cccceeeeecCCCCCceeeeeEEEecC--ccccCCccceEeeceEEeeCCeEEEEEE
Q 035626 289 GESNLKTRYARQETA-STVFEG-SIVSGTIKCEQPNRNVYEFTANMEFNG--QKFPLSQSNIVLRGCQLKNTDWIIGVVV 364 (457)
Q Consensus 289 GES~pk~K~~~~~t~-l~~~~~-~~~~g~I~~e~pn~~l~~F~Gtl~l~g--~~~~ls~~NiLlrGs~L~nT~~i~GvVV 364 (457)
|||++|.|-|++.++ +..+.. ..++ +..|+|+.+++.|-|++++.. +..+|+.+|.||.++.+. ++.++|+|+
T Consensus 220 GETDWKLrl~vp~tQ~l~~~~el~~i~--v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvA-s~t~~gvVv 296 (1051)
T KOG0210|consen 220 GETDWKLRLPVPRTQHLTEDSELMEIS--VYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVA-SGTAIGVVV 296 (1051)
T ss_pred CcccceeeccchhhccCCcccchheEE--EeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEe-cCcEEEEEE
Confidence 999999999999987 555433 4454 899999999999999999954 457999999999999999 677999999
Q ss_pred EecchhHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 365 YAGQETKAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 365 ~TG~dTKi~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
|||.||+-+||...++.|...+|.++|.+..+++.+++++++++..+-+
T Consensus 297 YTG~dtRsvMNts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~g 345 (1051)
T KOG0210|consen 297 YTGRDTRSVMNTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMKG 345 (1051)
T ss_pred EecccHHHHhccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998888776543
No 5
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.97 E-value=7.1e-30 Score=292.36 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=190.0
Q ss_pred EeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCc-c-------ccCccchhhhHHH
Q 035626 135 YINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPL-A-------VFGRTVSLFPLLF 206 (457)
Q Consensus 135 ~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~i-s-------~~~~~~~~~pLl~ 206 (457)
-+++.+.++++.+||.|++...|.+.+ ++.|++||..++++.++++++++++... . ..+.+...+++++
T Consensus 36 GLs~~e~~~rl~~~G~N~l~~~~~~~~---~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (997)
T TIGR01106 36 GLSAARAAEILARDGPNALTPPPTTPE---WVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSA 112 (997)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCH---HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Confidence 344455667889999999987665432 2457899999999999999988765311 0 1134566778999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEe
Q 035626 207 VLFVTAIKDGYEDWRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQ 283 (457)
Q Consensus 207 vl~is~ike~~ed~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vd 283 (457)
+++++++.+++++++++++.++++ +.+++|+|+|+++++++++|+|||+|.|++||.||||++|+++++ |.||
T Consensus 113 vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~----l~Vd 188 (997)
T TIGR01106 113 VVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQG----CKVD 188 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccC----cEEE
Confidence 999999999999999999877665 568999999999999999999999999999999999999999876 8999
Q ss_pred eccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEE
Q 035626 284 TMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVV 363 (457)
Q Consensus 284 ts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvV 363 (457)
||+|||||.|+.|.+... ...+++.+|++++||.+. .|++.|+|
T Consensus 189 eS~LTGES~pv~K~~~~~-----------------------------------~~~~~~~~n~l~~Gt~v~-~G~~~~~V 232 (997)
T TIGR01106 189 NSSLTGESEPQTRSPEFT-----------------------------------HENPLETRNIAFFSTNCV-EGTARGIV 232 (997)
T ss_pred ccccCCCCCceeccCCCc-----------------------------------ccCccccCCeEEeccEee-eeeEEEEE
Confidence 999999999999975321 112456778888888777 47999999
Q ss_pred EEecchhHHHHhhc---CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 364 VYAGQETKAMLNSA---ASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 364 V~TG~dTKi~~n~~---~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
++||.+|++++... ..+.+++++++.+++++..+..+.++++++.++++.
T Consensus 233 ~~tG~~T~~g~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (997)
T TIGR01106 233 VNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSL 285 (997)
T ss_pred EEccccchhhHHHhhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997766544 556678999999999999888877777766655543
No 6
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.96 E-value=1.3e-28 Score=280.90 Aligned_cols=223 Identities=16% Similarity=0.220 Sum_probs=172.7
Q ss_pred CCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCc-----c---ccCccch----hhhHH
Q 035626 138 DPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPL-----A---VFGRTVS----LFPLL 205 (457)
Q Consensus 138 ~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~i-----s---~~~~~~~----~~pLl 205 (457)
+.+.++++++||+|++..++.+.+ .+.+++||..+++++|+++++++++... . +...|.. +++++
T Consensus 63 ~~ev~~r~~~yG~N~l~~~~~~s~---~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~ 139 (941)
T TIGR01517 63 SSTLERREKVYGKNELPEKPPKSF---LQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVI 139 (941)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCH---HHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHH
Confidence 445677889999999998776433 2447899999999999999999987321 1 1112222 34455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeec
Q 035626 206 FVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTM 285 (457)
Q Consensus 206 ~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts 285 (457)
++++++++.++.++.+.++.++..++.+++|+|||+++++++++|+|||||.|++||.||||++|+++++ +.||||
T Consensus 140 ~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~----l~VdES 215 (941)
T TIGR01517 140 LVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLS----LEIDES 215 (941)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCc----EEEEec
Confidence 5566777777777777777666667889999999999999999999999999999999999999998865 999999
Q ss_pred cccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEE
Q 035626 286 NLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVY 365 (457)
Q Consensus 286 ~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~ 365 (457)
+|||||.|+.|.+.. +|++|+||.+. .|++.|+|++
T Consensus 216 ~LTGES~pv~K~~~~-------------------------------------------~n~v~~GT~v~-~G~~~~iV~~ 251 (941)
T TIGR01517 216 SITGESDPIKKGAPK-------------------------------------------DSFLLSGTVVN-EGSGRMLVTA 251 (941)
T ss_pred ccCCCCCcccccCCC-------------------------------------------CceEEeCCeEE-eeEEEEEEEE
Confidence 999999999886421 24555555555 3589999999
Q ss_pred ecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 366 AGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGM 412 (457)
Q Consensus 366 TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~ 412 (457)
||.+| |++.+....+ +++++++.++++..++..+.++++++.++++
T Consensus 252 tG~~T~~gki~~~~~~~~-~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~ 300 (941)
T TIGR01517 252 VGVNSFGGKLMMELRAEG-EDTPLQEKLSELAGLIGKFGMGSAVLLFLVL 300 (941)
T ss_pred eCCCcHHHHHHHhhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 5555555544 4579999999999888777777766666554
No 7
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.96 E-value=4.9e-29 Score=285.93 Aligned_cols=233 Identities=11% Similarity=0.116 Sum_probs=181.8
Q ss_pred eCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHH
Q 035626 136 INDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKD 215 (457)
Q Consensus 136 ~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike 215 (457)
++..+.++++++||.|++...+...+ ++.+++||..+++++++++++++++ .+.|...+.++++++++++..
T Consensus 27 Ls~~ea~~rl~~~G~N~l~~~~~~s~---~~~~l~q~~~~~~~iL~~aails~~-----~~~~~~~~iIl~vv~in~~i~ 98 (1053)
T TIGR01523 27 LTHDEAQHRLKEVGENRLEADSGIDA---KAMLLHQVCNAMCMVLIIAAAISFA-----MHDWIEGGVISAIIALNILIG 98 (1053)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCH---HHHHHHHHhCHHHHHHHHHHHHHHH-----HhhHHHHHHHHhHHHHHHHHH
Confidence 44445667889999999998765433 2457899999999999999999987 356777888889999999999
Q ss_pred HHHHHHHhhccccc---ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCc
Q 035626 216 GYEDWRRHRSDRNE---NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESN 292 (457)
Q Consensus 216 ~~ed~kr~k~d~~i---N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~ 292 (457)
++++++..++..++ ...+++|+|||++++|+.++|+|||||.|+.|+.||||++|+++++ +.||||+|||||.
T Consensus 99 ~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~----L~VDES~LTGES~ 174 (1053)
T TIGR01523 99 FIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKN----FDTDEALLTGESL 174 (1053)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCc----eEEEchhhcCCCC
Confidence 99999999876544 4678999999999999999999999999999999999999999877 9999999999999
Q ss_pred ccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHH
Q 035626 293 LKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKA 372 (457)
Q Consensus 293 pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi 372 (457)
|+.|.+..... +. ......+..|++|.||.+. .|.+.|+|++||.+|.+
T Consensus 175 pV~K~~~~~~~-----------------~~-------------~~~~~~d~~n~lf~GT~V~-~G~g~~vVvatG~~T~~ 223 (1053)
T TIGR01523 175 PVIKDAHATFG-----------------KE-------------EDTPIGDRINLAFSSSAVT-KGRAKGICIATALNSEI 223 (1053)
T ss_pred ceecccccccc-----------------cc-------------ccCCcccCCCccccCceEE-eeeEEEEEEEecCccHH
Confidence 99997632100 00 0000123457777777777 47999999999999954
Q ss_pred HHh---hcCCC-----------------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 373 MLN---SAASP-----------------------------------SKRSRLENYMNRETLWLSIFLLVMCLVVALG 411 (457)
Q Consensus 373 ~~n---~~~~~-----------------------------------~K~S~le~~ln~~i~~l~~illii~li~~i~ 411 (457)
++. ..... ...|++++++++++.+++++.++++++.++.
T Consensus 224 GkIa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~ 300 (1053)
T TIGR01523 224 GAIAAGLQGDGGLFQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAA 300 (1053)
T ss_pred HHHHHHHhhhhhccccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 22110 0139999999999998887777776665543
No 8
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=279.50 Aligned_cols=233 Identities=22% Similarity=0.302 Sum_probs=179.9
Q ss_pred CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccC-CccccCccchhhhHHHHHHHHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLP-PLAVFGRTVSLFPLLFVLFVTAIKDGY 217 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~-~is~~~~~~~~~pLl~vl~is~ike~~ 217 (457)
.+...+++.||.|++...+-. +++ +.++.||..+++..++++++++++. .+.+.. .....+++++++.++..++
T Consensus 48 ~e~~~r~~~~G~N~~~~~~~~--~~~-~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~--~~~~~I~~~i~~n~~~g~~ 122 (917)
T COG0474 48 EEVKRRLKKYGPNELPEEKKR--SLL-KKFLRQFKDPFIILLLVAALLSAFVGDWVDAG--VDAIVILLVVVINALLGFV 122 (917)
T ss_pred HHHHHHHhhcCCccccccccC--cHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--cceeeehHHHHHHHHHHHH
Confidence 334567788999999965542 222 4457788888888888888887763 222221 2333444455555555567
Q ss_pred HHHHHhh---cccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCccc
Q 035626 218 EDWRRHR---SDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLK 294 (457)
Q Consensus 218 ed~kr~k---~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk 294 (457)
++++..+ +.+++.+.+++|+|||++++++|++|+|||||+|+.||.||||++||++++ .+||||+|||||+|+
T Consensus 123 qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~----l~VdEs~LTGES~pv 198 (917)
T COG0474 123 QEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD----LEVDESALTGESLPV 198 (917)
T ss_pred HHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC----ceEEcccccCCCcch
Confidence 7777644 566777899999999999999999999999999999999999999999997 699999999999999
Q ss_pred ccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHH
Q 035626 295 TRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAML 374 (457)
Q Consensus 295 ~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~ 374 (457)
.|.+..... .+.|. .++..|++|+||.+++ |.+.|+|++||.+|++++
T Consensus 199 ~K~~~~~~~--------------~~~~~-----------------~~d~~n~l~sGt~V~~-G~~~giVvaTG~~T~~G~ 246 (917)
T COG0474 199 EKQALPLTK--------------SDAPL-----------------GLDRDNMLFSGTTVVS-GRAKGIVVATGFETEFGK 246 (917)
T ss_pred hcccccccc--------------ccccc-----------------cCCccceEEeCCEEEc-ceEEEEEEEEcCccHHHH
Confidence 998765421 01111 1567899999999995 679999999999998887
Q ss_pred hhcCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 375 NSAASP---SKRSRLENYMNRETLWLSIFLLVMCLVVALGM 412 (457)
Q Consensus 375 n~~~~~---~K~S~le~~ln~~i~~l~~illii~li~~i~~ 412 (457)
+....+ .+.|++++.++++..+++.+.++++++.++..
T Consensus 247 ia~~~~~~~~~~t~l~~~l~~~~~~l~~~~l~~~~~~~~~~ 287 (917)
T COG0474 247 IARLLPTKKEVKTPLQRKLNKLGKFLLVLALVLGALVFVVG 287 (917)
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765533 45799999999999999999998888888776
No 9
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.96 E-value=1.6e-28 Score=278.07 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=186.0
Q ss_pred EeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHH
Q 035626 135 YINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIK 214 (457)
Q Consensus 135 ~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ik 214 (457)
-+++.+.++++++||+|++...|.+.+ ++.|++||..+++++++++++++++. +.|...+.++++++++.+.
T Consensus 67 GLs~~ea~~r~~~~G~N~l~~~~~~s~---~~~~~~~~~~p~~~lL~~aa~ls~~~-----~~~~~a~~I~~iv~i~~~i 138 (902)
T PRK10517 67 GLNEAEVESAREQHGENELPAQKPLPW---WVHLWVCYRNPFNILLTILGAISYAT-----EDLFAAGVIALMVAISTLL 138 (902)
T ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHH
Confidence 455556677889999999998876533 25579999999999999999998873 4566777778888888888
Q ss_pred HHHHHHHHhhcccc---cccceeEEEeC------CEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeec
Q 035626 215 DGYEDWRRHRSDRN---ENNREALVLQS------DQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTM 285 (457)
Q Consensus 215 e~~ed~kr~k~d~~---iN~~~~~Vlr~------g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts 285 (457)
+++++++..++.++ +.+.+++|+|+ |++++|++++|+|||||.|++||.||||++|+++++ +.||||
T Consensus 139 ~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~----l~VDES 214 (902)
T PRK10517 139 NFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARD----LFVAQA 214 (902)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCc----eEEEec
Confidence 88888888765443 44778999998 789999999999999999999999999999999876 899999
Q ss_pred cccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEE
Q 035626 286 NLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVY 365 (457)
Q Consensus 286 ~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~ 365 (457)
+|||||.|+.|.+.+... + ...+.+..|++|.||.+. .|.+.|+|+.
T Consensus 215 ~LTGES~PV~K~~~~~~~------------------~--------------~~~~~~~~n~vfaGT~V~-~G~~~~vV~a 261 (902)
T PRK10517 215 SLTGESLPVEKFATTRQP------------------E--------------HSNPLECDTLCFMGTNVV-SGTAQAVVIA 261 (902)
T ss_pred CcCCCCCceecccccccc------------------c--------------ccCccccccceeeCceEe-eeeEEEEEEE
Confidence 999999999998753210 0 011234567777777777 4689999999
Q ss_pred ecchhH---HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 366 AGQETK---AMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 366 TG~dTK---i~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
||.+|. +.........+++++++.++++..++..++++++++.++++.
T Consensus 262 tG~~T~~GkI~~~v~~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~ 312 (902)
T PRK10517 262 TGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLING 312 (902)
T ss_pred eccccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999995 445555666778999999999998888777777766655543
No 10
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.96 E-value=2.6e-28 Score=272.48 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=180.2
Q ss_pred CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYE 218 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~e 218 (457)
.+.++++++||+|.++..+.++| +.|++||..++++.++++++++++. +.|...+.++++++++++.++++
T Consensus 5 ~ea~~r~~~~G~N~~~~~~~~~~----~~~~~~~~~~~~~lL~~aa~~s~~~-----~~~~~~~~i~~~~~i~~~i~~~q 75 (755)
T TIGR01647 5 AEAKKRLAKYGPNELPEKKVSPL----LKFLGFFWNPLSWVMEAAAIIAIAL-----ENWVDFVIILGLLLLNATIGFIE 75 (755)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHH----HHHHHHHhchHHHHHHHHHHHHHhh-----cchhhhhhhhhhhHHHHHHHHHH
Confidence 34566788999999998555443 5568999999999999999999883 45666777778888888888899
Q ss_pred HHHHhhccccc---ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccc
Q 035626 219 DWRRHRSDRNE---NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKT 295 (457)
Q Consensus 219 d~kr~k~d~~i---N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~ 295 (457)
+++..++.+.+ .+.+++|+|||++++++.++|+|||||.|++||.||||++|+++++ +.||||+|||||.|+.
T Consensus 76 e~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~----~~VDeS~LTGES~PV~ 151 (755)
T TIGR01647 76 ENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDY----IQVDQAALTGESLPVT 151 (755)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCc----eEEEcccccCCccceE
Confidence 98888765544 4788999999999999999999999999999999999999999876 8999999999999999
Q ss_pred cccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhH---H
Q 035626 296 RYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETK---A 372 (457)
Q Consensus 296 K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTK---i 372 (457)
|.+.+. .|.||.+.+| .+.++|+.||.+|. +
T Consensus 152 K~~~~~-------------------------v~aGT~v~~G---------------------~~~~~V~~tG~~T~~g~i 185 (755)
T TIGR01647 152 KKTGDI-------------------------AYSGSTVKQG---------------------EAEAVVTATGMNTFFGKA 185 (755)
T ss_pred eccCCe-------------------------eeccCEEEcc---------------------EEEEEEEEcCCccHHHHH
Confidence 875322 6778877776 89999999999995 4
Q ss_pred HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 373 MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 373 ~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~ 414 (457)
.+.....+..++++++.++++..+++.+.++++++.++++.+
T Consensus 186 ~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~ 227 (755)
T TIGR01647 186 AALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFF 227 (755)
T ss_pred HHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666679999999999999988888887777666544
No 11
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.96 E-value=5.2e-28 Score=274.31 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=175.8
Q ss_pred CCccccccccCcCceecCCCC-cchhhhHHHHHHHH-HHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHH
Q 035626 138 DPRKTNDKYEFTGNEIRTSKY-TLITFLPKNLFIQF-HRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKD 215 (457)
Q Consensus 138 ~~~~~~~~~~yg~N~I~t~Ky-t~~~flp~~L~eqF-~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike 215 (457)
+.+.++++++||+|++..++. ++| +.+++|| ..+++++++++++++++. +.|...+.+++++++.++..
T Consensus 27 ~~ev~~r~~~~G~N~i~~~~~~s~~----~~~l~~~~~~~~~~~L~~aa~ls~~~-----g~~~~~~~i~~~i~~~~~i~ 97 (884)
T TIGR01522 27 SQEASHRRAFHGWNEFDVEEDESLW----KKFLSQFVKNPLILLLIASAVISVFM-----GNIDDAVSITLAILIVVTVG 97 (884)
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCHH----HHHHHHHhhChHHHHHHHHHHHHHHH-----cchhhHHHHHhHHHHHHHHH
Confidence 334567888999999997664 444 4468899 899999999999999873 44555566666666677778
Q ss_pred HHHHHHHhhccccc---ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCc
Q 035626 216 GYEDWRRHRSDRNE---NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESN 292 (457)
Q Consensus 216 ~~ed~kr~k~d~~i---N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~ 292 (457)
++++++..++.+++ .+.+++|+|||++++|+++||+|||||.|++||.||||++|+++++ +.||||+|||||.
T Consensus 98 ~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~----l~VDES~LTGES~ 173 (884)
T TIGR01522 98 FVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVD----LSIDESNLTGETT 173 (884)
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCc----eEEEcccccCCCc
Confidence 88999888866554 3778999999999999999999999999999999999999999876 8999999999999
Q ss_pred ccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhH-
Q 035626 293 LKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETK- 371 (457)
Q Consensus 293 pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTK- 371 (457)
|+.|.+.+... .+ .......+|++|.||.+. .|.+.++|++||.+|.
T Consensus 174 pv~K~~~~~~~----------------~~---------------~~~~~~~~n~v~~GT~v~-~G~~~~~V~~tG~~T~~ 221 (884)
T TIGR01522 174 PVSKVTAPIPA----------------AT---------------NGDLAERSNIAFMGTLVR-CGHGKGIVVGTGSNTEF 221 (884)
T ss_pred ceecccccccc----------------cc---------------cccccccCceEEeCCEEE-eeeEEEEEEEecCccHH
Confidence 99998753210 00 001123456777777766 4699999999999994
Q ss_pred --HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 372 --AMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALG 411 (457)
Q Consensus 372 --i~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~ 411 (457)
+..........++++++.++++..++..+.++++++.+++
T Consensus 222 gki~~~v~~~~~~kt~lq~~l~~l~~~~~~~~~~~~~~~~~~ 263 (884)
T TIGR01522 222 GAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICLV 263 (884)
T ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566679999999999988776655544444333
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.96 E-value=6.6e-28 Score=272.63 Aligned_cols=233 Identities=18% Similarity=0.235 Sum_probs=183.5
Q ss_pred EeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHH
Q 035626 135 YINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIK 214 (457)
Q Consensus 135 ~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ik 214 (457)
-+++.+.++++++||+|.+...+...+ ++.+++||..+++++++++++++++. +.+...+.++++++++++.
T Consensus 33 GLs~~ev~~r~~~~G~N~l~~~~~~~~---~~~~~~~~~~p~~~iL~~~a~ls~~~-----~~~~~~~iI~~iv~~~~~i 104 (867)
T TIGR01524 33 GLTNVEVTERLAEFGPNQTVEEKKVPN---LRLLIRAFNNPFIYILAMLMGVSYLT-----DDLEATVIIALMVLASGLL 104 (867)
T ss_pred CCCHHHHHHHHHhcCCCcCCCCCCCCH---HHHHHHHHhhHHHHHHHHHHHHHHHH-----hhHHHHHHhhhHHHHHHHH
Confidence 445556677889999999998775422 25578999999999999999999873 5666777778888888888
Q ss_pred HHHHHHHHhhccc---ccccceeEEEe------CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeec
Q 035626 215 DGYEDWRRHRSDR---NENNREALVLQ------SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTM 285 (457)
Q Consensus 215 e~~ed~kr~k~d~---~iN~~~~~Vlr------~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts 285 (457)
..+++++..++.. ++.+.+++|+| ||++++++.++|+|||||.|++||.||||++|+++++ +.||||
T Consensus 105 ~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~----l~VDES 180 (867)
T TIGR01524 105 GFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARD----LFINQS 180 (867)
T ss_pred HHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCc----eEEEcc
Confidence 8888888766544 34477899999 9999999999999999999999999999999999876 899999
Q ss_pred cccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEE
Q 035626 286 NLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVY 365 (457)
Q Consensus 286 ~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~ 365 (457)
+|||||.|+.|.+..... + +....+..|++|.||.+. .|.+.|+|+.
T Consensus 181 ~LTGES~PV~K~~~~~~~-----------------~---------------~~~~~~~~n~vfaGT~v~-~G~~~~~V~~ 227 (867)
T TIGR01524 181 ALTGESLPVEKFVEDKRA-----------------R---------------DPEILERENLCFMGTNVL-SGHAQAVVLA 227 (867)
T ss_pred cccCCCCcccccCCcccc-----------------c---------------cccccccccceecCCeEE-EeEEEEEEEE
Confidence 999999999998753210 0 001123456777777766 3699999999
Q ss_pred ecchhHH---HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 366 AGQETKA---MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 366 TG~dTKi---~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
||.+|.+ ...... +.+++++++.++++..++..+.++++++.++++.
T Consensus 228 tG~~T~~gki~~~v~~-~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~ 277 (867)
T TIGR01524 228 TGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMING 277 (867)
T ss_pred EcCccHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHH
Confidence 9999954 445555 5556899999999999988887777776665544
No 13
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.95 E-value=2.6e-27 Score=269.40 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCccc-----cCccchhhhHHHHHHHHHHHHHHHHHHHhhccccc---ccceeEEEeC
Q 035626 168 LFIQFHRVAYLYFLAIAALNQLPPLAV-----FGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNE---NNREALVLQS 239 (457)
Q Consensus 168 L~eqF~~~~NlyfLiiaIl~~i~~is~-----~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~~i---N~~~~~Vlr~ 239 (457)
+++||.++++++++++++++++..+.+ .+.|...+.++++++++++..++++++..++.+.+ .+.+++|+|+
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd 80 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD 80 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC
Confidence 478999999999999999999864322 23455667777888888888889998888765544 4678999999
Q ss_pred CEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccccccccccccccceeeeec
Q 035626 240 DQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCE 319 (457)
Q Consensus 240 g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e 319 (457)
|++++++++||+|||||.|++||.||||++|+++++ |.||||+|||||.|+.|.+....
T Consensus 81 g~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~----l~VdeS~LTGES~pv~K~~~~~~----------------- 139 (917)
T TIGR01116 81 GRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKT----LRVDQSILTGESVSVNKHTESVP----------------- 139 (917)
T ss_pred CEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecc----eEEEcccccCCCCcccccccccC-----------------
Confidence 999999999999999999999999999999999886 99999999999999999764221
Q ss_pred CCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHH---hhcCCCCCCChHHHHHHHHHHH
Q 035626 320 QPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAML---NSAASPSKRSRLENYMNRETLW 396 (457)
Q Consensus 320 ~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~---n~~~~~~K~S~le~~ln~~i~~ 396 (457)
+ ....+.+.+|++|+||.+.+ |++.|+|++||.+|++++ +....+.++|++++.+++++..
T Consensus 140 --~-------------~~~~~~~~~n~l~~GT~v~~-G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~lq~~l~~~~~~ 203 (917)
T TIGR01116 140 --D-------------ERAVNQDKKNMLFSGTLVVA-GKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGEL 203 (917)
T ss_pred --c-------------cccCcccccceeeeCCEEec-ceEEEEEEEeCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 0 01123456789999999985 899999999999996654 6667777889999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 035626 397 LSIFLLVMCLVVALGM 412 (457)
Q Consensus 397 l~~illii~li~~i~~ 412 (457)
++.+++++|++.++++
T Consensus 204 l~~~~~~~~~i~~~~~ 219 (917)
T TIGR01116 204 LSKVIGLICILVWVIN 219 (917)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777666554
No 14
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.1e-28 Score=259.44 Aligned_cols=228 Identities=19% Similarity=0.227 Sum_probs=179.9
Q ss_pred ccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHH
Q 035626 140 RKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYED 219 (457)
Q Consensus 140 ~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed 219 (457)
+...+++.||.|++....-..+ ++.+++||.+++...+|+.|+++|+. .+|...+.+.+++++.++..++++
T Consensus 28 ev~~r~~~yG~Nel~~ee~~~~---wk~vLeQF~n~Li~iLL~sA~ISfvl-----~~~~e~~vI~liiv~nvtVG~~QE 99 (972)
T KOG0202|consen 28 EVTRRRKKYGENELPAEEGESL---WKLVLEQFDNPLILILLLSAAISFVL-----ADFDEPFVITLIIVINVTVGFVQE 99 (972)
T ss_pred HHHHHHHhcCCccCccccCCcH---HHHHHHHHHhHHHHHHHHHHHHHHHH-----Hhcccceeeeeeeeeeeeeeeeee
Confidence 4566888999999987554333 25579999999999999999999973 344455556666777777777888
Q ss_pred HHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCccccc
Q 035626 220 WRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTR 296 (457)
Q Consensus 220 ~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K 296 (457)
|+..++..+++ +..|+|+|+|+.+.+..++|+|||||.|+-||+||||++|++..+ +.||||+|||||.|+.|
T Consensus 100 y~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~s----l~iDeS~LTGEs~pv~K 175 (972)
T KOG0202|consen 100 YNAEKALEALKELVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKS----LRIDESSLTGESEPVSK 175 (972)
T ss_pred hhhHHHHHHHHhcCCccceEEecCcccceehhccCCCCEEEEecCCccccceeEEeeee----eeeecccccCCcccccc
Confidence 88888765554 889999999999999999999999999999999999999999987 99999999999999999
Q ss_pred ccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHH
Q 035626 297 YARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAM 373 (457)
Q Consensus 297 ~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~ 373 (457)
....... .| ....-+.+||+|.|+.++ .|.+.|+|+.||.+| |+.
T Consensus 176 ~t~~v~~----------------~~---------------~~~~~dk~NiaFsGT~V~-~G~a~GIVi~TG~nTeiG~I~ 223 (972)
T KOG0202|consen 176 DTDAVPK----------------DE---------------NADVQDKKNIAFSGTLVV-AGRAKGIVIGTGLNTEIGKIF 223 (972)
T ss_pred cCccccC----------------CC---------------CCccccceeeEeecceee-cCceeEEEEeccccchHHHHH
Confidence 6533210 01 111124567888888887 479999999999999 455
Q ss_pred HhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 374 LNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALG 411 (457)
Q Consensus 374 ~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~ 411 (457)
..++..+..+||||+.++.+...+.-+..++|+...++
T Consensus 224 ~~m~~~e~~kTPLqk~ld~~G~qLs~~is~i~v~v~~~ 261 (972)
T KOG0202|consen 224 KMMQATESPKTPLQKKLDEFGKQLSKVISFICVGVWLL 261 (972)
T ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHHheehhhhHHHh
Confidence 55666677789999999999999885555555555444
No 15
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.94 E-value=2e-26 Score=221.48 Aligned_cols=167 Identities=26% Similarity=0.452 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc---cce-eEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCe
Q 035626 204 LLFVLFVTAIKDGYEDWRRHRSDRNEN---NRE-ALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGI 279 (457)
Q Consensus 204 Ll~vl~is~ike~~ed~kr~k~d~~iN---~~~-~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~ 279 (457)
++++++++.+.+.++++++++..++++ ..+ ++|+|+|++++++|++|+|||||+|++||.+|||+++|+ +|.
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~----~g~ 77 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLE----SGS 77 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEE----SSE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCcccee----ccc
Confidence 577888888889999999998876654 344 899999999999999999999999999999999999998 345
Q ss_pred eEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeE
Q 035626 280 AYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWI 359 (457)
Q Consensus 280 ~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i 359 (457)
|+||||+||||+.|+.|.+. +++.+|++++||.+. +||+
T Consensus 78 ~~vd~s~ltGes~pv~k~~~----------------------------------------~~~~~~~i~~Gs~v~-~g~~ 116 (230)
T PF00122_consen 78 AYVDESALTGESEPVKKTPL----------------------------------------PLNPGNIIFAGSIVV-SGWG 116 (230)
T ss_dssp EEEECHHHHSBSSEEEESSS----------------------------------------CCCTTTEE-TTEEEE-EEEE
T ss_pred cccccccccccccccccccc----------------------------------------cccccchhhcccccc-cccc
Confidence 99999999999999988752 466789999999999 8999
Q ss_pred EEEEEEecchhHHHHh---hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035626 360 IGVVVYAGQETKAMLN---SAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLW 415 (457)
Q Consensus 360 ~GvVV~TG~dTKi~~n---~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~ 415 (457)
+|+|++||.+|++.++ ....+.+++++++.+++++.+++.+.+++++++++++.++
T Consensus 117 ~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (230)
T PF00122_consen 117 IGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKILIIIILAIAILVFIIWFFN 175 (230)
T ss_dssp EEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHHHHHHHHHHHHHHHHHCHTG
T ss_pred ccccceeeecccccccccccccccccchhhhhhhHHHHHHHHhcccccchhhhccceec
Confidence 9999999999965544 4456667799999999999999988888888777666554
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.94 E-value=2.4e-26 Score=264.83 Aligned_cols=223 Identities=16% Similarity=0.252 Sum_probs=168.8
Q ss_pred ccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHH
Q 035626 140 RKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYED 219 (457)
Q Consensus 140 ~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed 219 (457)
+.+.++.+||.|.+...+-++| +.|++||..+++++++++++++++ .++|.+.+.++++++++.+...++.
T Consensus 144 e~~~r~~~yG~N~i~~~~~s~~----~ll~~~~~~p~~i~~i~~~~l~~~-----~~~~~~~~~i~~i~~~~~~~~~~~~ 214 (1054)
T TIGR01657 144 DIAQRKAKYGKNEIEIPVPSFL----ELLKEEVLHPFYVFQVFSVILWLL-----DEYYYYSLCIVFMSSTSISLSVYQI 214 (1054)
T ss_pred HHHHHHHhcCCCeeecCCCCHH----HHHHHHHhchHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999988664433 567999999999888887777665 3556667777777777777777777
Q ss_pred HHHhhccccc--ccceeEEEeCCEEEEEEccCCcCCcEEEeC--CCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccc
Q 035626 220 WRRHRSDRNE--NNREALVLQSDQFHLKKWKNIRAGEVVKIC--SDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKT 295 (457)
Q Consensus 220 ~kr~k~d~~i--N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~--~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~ 295 (457)
++..++.+++ ++..++|+|+|++++++++||+|||||.|+ +|+.+|||++||+++ |.||||+|||||.|+.
T Consensus 215 ~k~~~~L~~~~~~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~-----~~VdES~LTGES~Pv~ 289 (1054)
T TIGR01657 215 RKQMQRLRDMVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGS-----CIVNESMLTGESVPVL 289 (1054)
T ss_pred HHHHHHHHHhhcCCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCc-----EEEecccccCCcccee
Confidence 7666654443 366899999999999999999999999999 999999999999863 9999999999999999
Q ss_pred cccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEee------CCeEEEEEEEecch
Q 035626 296 RYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKN------TDWIIGVVVYAGQE 369 (457)
Q Consensus 296 K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~n------T~~i~GvVV~TG~d 369 (457)
|.+.+... . .+..++ ......+|++|.||.+.. .|.+.|+|++||.+
T Consensus 290 K~~~~~~~---------------~-~~~~~~-----------~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~ 342 (1054)
T TIGR01657 290 KFPIPDNG---------------D-DDEDLF-----------LYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFS 342 (1054)
T ss_pred cccCCccc---------------c-cccccc-----------ccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCcc
Confidence 98753310 0 000000 012345678888888864 46899999999999
Q ss_pred h---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHH
Q 035626 370 T---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLV 403 (457)
Q Consensus 370 T---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illi 403 (457)
| ++.+....++.+.+++++.+.+++.+++++.++
T Consensus 343 T~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~a~i 379 (1054)
T TIGR01657 343 TSKGQLVRSILYPKPRVFKFYKDSFKFILFLAVLALI 379 (1054)
T ss_pred ccchHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9 666666666667789999988887766554433
No 17
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.94 E-value=2.5e-26 Score=260.55 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=178.4
Q ss_pred EeCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCcc-c-----cCccchhhhHHHHH
Q 035626 135 YINDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLA-V-----FGRTVSLFPLLFVL 208 (457)
Q Consensus 135 ~~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is-~-----~~~~~~~~pLl~vl 208 (457)
-+++.+.++++++||+|++...|.+.+ ++.|++||..++++.++++++++++.... + .+.|...+.+++++
T Consensus 45 GLs~~ea~~rl~~~G~N~l~~~~~~~~---~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v 121 (903)
T PRK15122 45 GLTEEDAAERLQRYGPNEVAHEKPPHA---LVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMV 121 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHH
Confidence 344455667889999999998775433 24468999999999999999999874211 0 12456677777888
Q ss_pred HHHHHHHHHHHHHHhhccccc---ccceeEEEeC------CEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCe
Q 035626 209 FVTAIKDGYEDWRRHRSDRNE---NNREALVLQS------DQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGI 279 (457)
Q Consensus 209 ~is~ike~~ed~kr~k~d~~i---N~~~~~Vlr~------g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~ 279 (457)
+++++.+++++++..++..++ .+.+++|+|+ |++++|+.++|+|||||.|++||.||||++|+++++
T Consensus 122 ~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~---- 197 (903)
T PRK15122 122 LLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRD---- 197 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCc----
Confidence 888888999999887765444 4678999998 489999999999999999999999999999999876
Q ss_pred eEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeE
Q 035626 280 AYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWI 359 (457)
Q Consensus 280 ~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i 359 (457)
+.||||+|||||.|+.|.+.... + ..+.. +.. .++.....+..|++|.||.+. .|.+
T Consensus 198 l~VDES~LTGES~PV~K~~~~~~-------------~--~~~~~------~~~-~~~~~~~~~~~n~vfaGT~V~-~G~~ 254 (903)
T PRK15122 198 LFISQAVLTGEALPVEKYDTLGA-------------V--AGKSA------DAL-ADDEGSLLDLPNICFMGTNVV-SGTA 254 (903)
T ss_pred eEEEccccCCCCcceeeeccccc-------------c--ccccc------ccc-ccccCCcccccceEEeCCEEE-eeeE
Confidence 89999999999999999762110 0 00000 000 000011234567777777777 3799
Q ss_pred EEEEEEecchhHH---HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 360 IGVVVYAGQETKA---MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALG 411 (457)
Q Consensus 360 ~GvVV~TG~dTKi---~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~ 411 (457)
.|+|+.||.+|.+ ...... +...+++++.++++..++..+.++++.+..++
T Consensus 255 ~~~V~atG~~T~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~ 308 (903)
T PRK15122 255 TAVVVATGSRTYFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLI 308 (903)
T ss_pred EEEEEEeccccHhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999954 444444 44568999999998887766655555444433
No 18
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.8e-24 Score=233.60 Aligned_cols=221 Identities=15% Similarity=0.197 Sum_probs=175.0
Q ss_pred CccccccccCcCceecCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCcc----ccCccch---hhhHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKY-TLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLA----VFGRTVS---LFPLLFVLFV 210 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Ky-t~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is----~~~~~~~---~~pLl~vl~i 210 (457)
.+...|++.||+|.++.++- ++| .++||.|++...++++++|++++...+. ..+|+.. ++.+++|+++
T Consensus 123 ~el~~Rr~~fG~N~~p~k~~K~Fl----~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~V 198 (1034)
T KOG0204|consen 123 DELERRRKIFGSNTYPEKPPKGFL----RFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLV 198 (1034)
T ss_pred HHHHHHHHhcCCCCCCCCCCccHH----HHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEE
Confidence 34556788899999998774 444 4579999999999999999999875543 2244432 2334556677
Q ss_pred HHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCC
Q 035626 211 TAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGE 290 (457)
Q Consensus 211 s~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGE 290 (457)
+++.++-++.|-.+.++...+.++.|+|+|+.++++..||+||||+.|+-|+.+|||++++++.+ +.||||+||||
T Consensus 199 tA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~----L~iDESSlTGE 274 (1034)
T KOG0204|consen 199 TAVNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNS----LKIDESSLTGE 274 (1034)
T ss_pred eecchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccc----eeEecccccCC
Confidence 77766666666666666666899999999999999999999999999999999999999999987 99999999999
Q ss_pred CcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh
Q 035626 291 SNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET 370 (457)
Q Consensus 291 S~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT 370 (457)
|+++.|.+. .+.+.++||-..+| .+.++|..+|.+|
T Consensus 275 Sd~v~k~~~-----------------------~dPfLlSGTkv~eG---------------------sgkMlVTaVGmnt 310 (1034)
T KOG0204|consen 275 SDHVQKSLD-----------------------KDPFLLSGTKVMEG---------------------SGKMLVTAVGMNT 310 (1034)
T ss_pred CcceeccCC-----------------------CCCeEeecceeecC---------------------cceEEEEEeeecc
Confidence 999988642 34457778877777 8899999999999
Q ss_pred ---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 371 ---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALG 411 (457)
Q Consensus 371 ---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~ 411 (457)
++|...+......|++|-+++.++..+-.+.++++++.+++
T Consensus 311 ~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~V 354 (1034)
T KOG0204|consen 311 QWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIV 354 (1034)
T ss_pred hHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666776789999999999888866655555444443
No 19
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3e-22 Score=211.16 Aligned_cols=207 Identities=17% Similarity=0.137 Sum_probs=159.5
Q ss_pred eCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccC---ccchhhhHHHHHHHHH
Q 035626 136 INDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFG---RTVSLFPLLFVLFVTA 212 (457)
Q Consensus 136 ~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~---~~~~~~pLl~vl~is~ 212 (457)
+...+.++|+++||.|+++..|.+.+..+..++|...+.++-.--+.++.+. ...+ .|..++-+.+.+++.+
T Consensus 37 Lt~~E~~eRlk~fG~NkleEkken~~lKFl~Fm~~PlswVMEaAAimA~~La-----ng~~~~~DW~DF~gI~~LLliNs 111 (942)
T KOG0205|consen 37 LTSDEVEERLKIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLA-----NGGGRPPDWQDFVGICCLLLINS 111 (942)
T ss_pred CchHHHHHHHHhhCchhhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHh-----cCCCCCcchhhhhhhheeeeecc
Confidence 3334566788999999999999887776678888888877444333322222 1122 3455555666667777
Q ss_pred HHHHHHHHHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccC
Q 035626 213 IKDGYEDWRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDG 289 (457)
Q Consensus 213 ike~~ed~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdG 289 (457)
...++|+++.-..-.++. ..+..|+|||+|.++....|+|||||.++.|+.+|||++||++.. +.||+|.|||
T Consensus 112 ti~FveE~nAGn~aa~L~a~LA~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~----LkiDQSAlTG 187 (942)
T KOG0205|consen 112 TISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLEGDP----LKIDQSALTG 187 (942)
T ss_pred eeeeeeccccchHHHHHHhccCcccEEeecCeeeeeeccccccCceeeeccCCEecCccceecCCc----cccchhhhcC
Confidence 767777766655433332 578899999999999999999999999999999999999999874 9999999999
Q ss_pred CCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecch
Q 035626 290 ESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQE 369 (457)
Q Consensus 290 ES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~d 369 (457)
||.|+.|.+.++ .|+|+.+-.| .+.+||++||.+
T Consensus 188 ESLpvtKh~gd~-------------------------vfSgSTcKqG---------------------E~eaVViATg~~ 221 (942)
T KOG0205|consen 188 ESLPVTKHPGDE-------------------------VFSGSTCKQG---------------------EIEAVVIATGVH 221 (942)
T ss_pred CccccccCCCCc-------------------------eecccccccc---------------------eEEEEEEEeccc
Confidence 999999998766 7788877777 999999999999
Q ss_pred h---HHHHhhcCCCCCCChHHHHHHHHHHHHH
Q 035626 370 T---KAMLNSAASPSKRSRLENYMNRETLWLS 398 (457)
Q Consensus 370 T---Ki~~n~~~~~~K~S~le~~ln~~i~~l~ 398 (457)
| |....... .....++++.++.+-.+++
T Consensus 222 TF~GkAA~LVds-t~~~GHFqkVLt~IGn~ci 252 (942)
T KOG0205|consen 222 TFFGKAAHLVDS-TNQVGHFQKVLTGIGNFCI 252 (942)
T ss_pred eeehhhHHhhcC-CCCcccHHHHHHhhhhHHH
Confidence 9 55555444 5567899999998866553
No 20
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.86 E-value=5.6e-21 Score=206.39 Aligned_cols=163 Identities=19% Similarity=0.302 Sum_probs=130.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhccccc------ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEE
Q 035626 198 TVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNE------NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLL 271 (457)
Q Consensus 198 ~~~~~pLl~vl~is~ike~~ed~kr~k~d~~i------N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL 271 (457)
|.....+++++++... ++.++++++.+.+ ++.+++|+|+|++++++.++|+|||+|.+++||.||||++++
T Consensus 18 ~~~~~~i~~~~~~~~~---l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii 94 (536)
T TIGR01512 18 YLEGALLLLLFSIGET---LEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVL 94 (536)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEE
Confidence 4444444444444444 6666666655443 578899999999999999999999999999999999999999
Q ss_pred eeeCCCCeeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeece
Q 035626 272 GTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGC 351 (457)
Q Consensus 272 ~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs 351 (457)
+++ +.||||+||||+.|..|.+.+. .|.||.+.+|
T Consensus 95 ~g~-----~~vdes~lTGEs~pv~k~~g~~-------------------------v~aGt~v~~G--------------- 129 (536)
T TIGR01512 95 SGT-----STVDESALTGESVPVEKAPGDE-------------------------VFAGAINLDG--------------- 129 (536)
T ss_pred eCc-----EEEEecccCCCCCcEEeCCCCE-------------------------EEeeeEECCc---------------
Confidence 864 8899999999999999876433 7888888877
Q ss_pred EEeeCCeEEEEEEEecchhHH---HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 352 QLKNTDWIIGVVVYAGQETKA---MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 352 ~L~nT~~i~GvVV~TG~dTKi---~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~ 414 (457)
.+.+.|+.||.+|.+ .........+++++++.++++..++..+.++++++.++.+++
T Consensus 130 ------~~~~~V~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (536)
T TIGR01512 130 ------VLTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGL 189 (536)
T ss_pred ------eEEEEEEEeccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999954 444555566789999999999999988888887777666543
No 21
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.5e-20 Score=201.46 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=154.4
Q ss_pred cccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHH
Q 035626 143 NDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRR 222 (457)
Q Consensus 143 ~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr 222 (457)
.++.-||+|.|.-+..+.+..| +..+.|.|+++-++.-++ |...+++.++..++++-..++.-..||..+.
T Consensus 168 ~r~~iyG~N~i~l~ik~i~~iL-------v~EvL~PfYlFQ~fSv~l--W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~q 238 (1140)
T KOG0208|consen 168 DRRIIYGRNVISLPIKSISQIL-------VKEVLNPFYLFQAFSVAL--WLADSYYYYAFCIVIISVYSIVLSVYETRKQ 238 (1140)
T ss_pred hHHhhcCCceeeeecccHHHHH-------HHhccchHHHHHhHHhhh--hhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999998887776554 344566666665544333 4456778888888888888888888888887
Q ss_pred hhcccccc--cceeEEEeCCEEEEEEccCCcCCcEEEeCC-CCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccc
Q 035626 223 HRSDRNEN--NREALVLQSDQFHLKKWKNIRAGEVVKICS-DDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYAR 299 (457)
Q Consensus 223 ~k~d~~iN--~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~-ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~ 299 (457)
.+..+.+- ...|+|+|+|.|++|.+.||+||||+.+.+ +-..|||++|++++ |.||||+|||||.|+.|.+.
T Consensus 239 s~rlr~mv~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~-----civNEsmLTGESVPv~K~~l 313 (1140)
T KOG0208|consen 239 SIRLRSMVKFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGD-----CIVNESMLTGESVPVTKTPL 313 (1140)
T ss_pred HHHHHHHhcCCceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeCc-----EEeecccccCCcccccccCC
Confidence 77766654 457899999999999999999999999988 99999999999866 99999999999999999987
Q ss_pred cccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHHHhh
Q 035626 300 QETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAMLNS 376 (457)
Q Consensus 300 ~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~~n~ 376 (457)
+.-. + .....+.+...+.....|.||-.++-+. .-.+.+.|+|+.||..| .+.++.
T Consensus 314 ~~~~-----~-~~~~~~~~~~~~~rh~lfcGT~vlq~r~---------------~~g~~v~a~V~RTGF~T~KGqLVRsi 372 (1140)
T KOG0208|consen 314 PMGT-----D-SLDSITISMSTNSRHTLFCGTKVLQARA---------------YLGGPVLAMVLRTGFSTTKGQLVRSI 372 (1140)
T ss_pred cccc-----c-cCcCeeechhhcCcceeeccceEEEeec---------------CCCCceEEEEEeccccccccHHHHhh
Confidence 6211 0 0000122222233334666766664210 00246899999999999 466666
Q ss_pred cCCCCCCChHHHHHHHHH
Q 035626 377 AASPSKRSRLENYMNRET 394 (457)
Q Consensus 377 ~~~~~K~S~le~~ln~~i 394 (457)
-.++....++.+...+++
T Consensus 373 lyPkP~~fkfyrds~~fi 390 (1140)
T KOG0208|consen 373 LYPKPVNFKFYRDSFKFI 390 (1140)
T ss_pred cCCCCcccHHHHHHHHHH
Confidence 556554444544444433
No 22
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.85 E-value=4.3e-20 Score=202.94 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccc------Cccchh---hhHHHHHHHHHHHHHHHHHHHhhcccccc---cc-eeEE
Q 035626 170 IQFHRVAYLYFLAIAALNQLPPLAVF------GRTVSL---FPLLFVLFVTAIKDGYEDWRRHRSDRNEN---NR-EALV 236 (457)
Q Consensus 170 eqF~~~~NlyfLiiaIl~~i~~is~~------~~~~~~---~pLl~vl~is~ike~~ed~kr~k~d~~iN---~~-~~~V 236 (457)
.||++++.+.+++.++++++..+.+. .++..+ +.+++.+++..+-+.+.+++..++.+.++ +. .++|
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v 108 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK 108 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 47888888999999998886432111 111122 33333344444444455555554433333 33 6899
Q ss_pred EeCCE-EEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCccccccccccccccccccccccee
Q 035626 237 LQSDQ-FHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGT 315 (457)
Q Consensus 237 lr~g~-~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~ 315 (457)
+|+|+ +++++.++|++||+|.+++||.||||++++++. ..||||+|||||.|+.|.+...
T Consensus 109 ir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~-----a~VDESaLTGES~PV~K~~G~~-------------- 169 (679)
T PRK01122 109 LREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGV-----ASVDESAITGESAPVIRESGGD-------------- 169 (679)
T ss_pred EECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEcc-----EEEEcccccCCCCceEeCCCCc--------------
Confidence 99887 899999999999999999999999999999864 7899999999999999986532
Q ss_pred eeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHH
Q 035626 316 IKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNR 392 (457)
Q Consensus 316 I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~ 392 (457)
....|.||.+.+| ++.+.|..+|.+| |+....+..+.++|++|..++.
T Consensus 170 --------~~~V~aGT~v~~G---------------------~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~ 220 (679)
T PRK01122 170 --------FSSVTGGTRVLSD---------------------WIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTI 220 (679)
T ss_pred --------cCeEEeceEEEee---------------------eEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHH
Confidence 1126788888877 9999999999999 5555566666778999998888
Q ss_pred HHHHHHHHHHHH
Q 035626 393 ETLWLSIFLLVM 404 (457)
Q Consensus 393 ~i~~l~~illii 404 (457)
+...++++.+++
T Consensus 221 l~~~l~~i~l~~ 232 (679)
T PRK01122 221 LLAGLTIIFLLV 232 (679)
T ss_pred HHHhhhHHHHHH
Confidence 766665444433
No 23
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.84 E-value=4.5e-20 Score=202.63 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHccCCcccc-----C-ccchhhhHHHHHHHHHH-HHHHHHHHHhhcccc---c---ccc-eeE-
Q 035626 171 QFHRVAYLYFLAIAALNQLPPLAVF-----G-RTVSLFPLLFVLFVTAI-KDGYEDWRRHRSDRN---E---NNR-EAL- 235 (457)
Q Consensus 171 qF~~~~NlyfLiiaIl~~i~~is~~-----~-~~~~~~pLl~vl~is~i-ke~~ed~kr~k~d~~---i---N~~-~~~- 235 (457)
+|+++..+.+++.++++++....+. + +..+.+.++++++++.+ -.+.|.+.++|+.++ + .+. +++
T Consensus 29 ~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~ 108 (673)
T PRK14010 29 MIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARR 108 (673)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 5667778888888888875322111 1 11223333333333333 334444444444333 2 233 565
Q ss_pred EEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCccccccccccccccccccccccee
Q 035626 236 VLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGT 315 (457)
Q Consensus 236 Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~ 315 (457)
|.|||++++++.++|++||+|.+++||.||||+++++++ ..||||+|||||.|+.|.+....
T Consensus 109 v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~-----~~VDESaLTGES~PV~K~~g~d~------------- 170 (673)
T PRK14010 109 IKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGL-----ATVDESAITGESAPVIKESGGDF------------- 170 (673)
T ss_pred EEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcc-----eEEecchhcCCCCceeccCCCcc-------------
Confidence 678999999999999999999999999999999999874 78999999999999999864210
Q ss_pred eeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHH
Q 035626 316 IKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNR 392 (457)
Q Consensus 316 I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~ 392 (457)
...|.||.+.+| ++.+.|..||.+| |+....+..+.++|++|..+..
T Consensus 171 ---------~~V~aGT~v~~G---------------------~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~ 220 (673)
T PRK14010 171 ---------DNVIGGTSVASD---------------------WLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFT 220 (673)
T ss_pred ---------CeeecCceeecc---------------------eEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHH
Confidence 117888888877 9999999999999 5555666777778999988776
Q ss_pred HHHHHH
Q 035626 393 ETLWLS 398 (457)
Q Consensus 393 ~i~~l~ 398 (457)
+...++
T Consensus 221 l~~~l~ 226 (673)
T PRK14010 221 LLMTLT 226 (673)
T ss_pred HHHHHh
Confidence 654443
No 24
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.84 E-value=4e-20 Score=200.55 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=129.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhccccc------ccceeEEEeCC-EEEEEEccCCcCCcEEEeCCCCeeeccEEE
Q 035626 198 TVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNE------NNREALVLQSD-QFHLKKWKNIRAGEVVKICSDDTIPCDVVL 270 (457)
Q Consensus 198 ~~~~~pLl~vl~is~ike~~ed~kr~k~d~~i------N~~~~~Vlr~g-~~~~i~~~dL~vGDII~l~~ge~vPAD~vL 270 (457)
|..+..+++++++. .+++.++++++.+.+ ++..++|+|+| +++++++++|+|||+|.+++||.||||++|
T Consensus 18 ~~~~~~i~~~~~~~---~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~v 94 (556)
T TIGR01525 18 VLEGALLLFLFLLG---ETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVV 94 (556)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEE
Confidence 33444444444444 456666666665543 36789999985 999999999999999999999999999999
Q ss_pred EeeeCCCCeeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeec
Q 035626 271 LGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRG 350 (457)
Q Consensus 271 L~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrG 350 (457)
+++. +.||||+||||+.|+.|.+.+. .|+||.+.+|
T Consensus 95 i~g~-----~~vdes~lTGEs~pv~k~~g~~-------------------------v~aGt~v~~g-------------- 130 (556)
T TIGR01525 95 ISGE-----SEVDESALTGESMPVEKKEGDE-------------------------VFAGTINGDG-------------- 130 (556)
T ss_pred Eecc-----eEEeehhccCCCCCEecCCcCE-------------------------EeeceEECCc--------------
Confidence 9864 7899999999999999876432 7788877776
Q ss_pred eEEeeCCeEEEEEEEecchhHHH---HhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 351 CQLKNTDWIIGVVVYAGQETKAM---LNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 351 s~L~nT~~i~GvVV~TG~dTKi~---~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~ 414 (457)
.+.++|+.||.+|.+. ......+.+++++++.+++++.++..+.++++++++++|.+
T Consensus 131 -------~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~ 190 (556)
T TIGR01525 131 -------SLTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLA 190 (556)
T ss_pred -------eEEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999544 44445566789999999999999988888888887777654
No 25
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.83 E-value=9.5e-21 Score=204.83 Aligned_cols=229 Identities=15% Similarity=0.134 Sum_probs=170.0
Q ss_pred cccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCc---cc-----cCccchhhhHHHHHHHHHHH
Q 035626 143 NDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPL---AV-----FGRTVSLFPLLFVLFVTAIK 214 (457)
Q Consensus 143 ~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~i---s~-----~~~~~~~~pLl~vl~is~ik 214 (457)
....+-|+|.++.+|-+.-+ ..+..|+...+.+..++.++++++... +. .......+.|+.+++++.+.
T Consensus 66 ~~L~rdG~NaL~Ppk~t~~w---ikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~ 142 (1019)
T KOG0203|consen 66 EKLARDGPNALTPPKTTPEW---IKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLF 142 (1019)
T ss_pred hhhccCCCCCCCCCCCChHH---HHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecC
Confidence 45678999999998876521 224667777788888999998886421 11 11112335566677777777
Q ss_pred HHHHHHHHhh---cccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCC
Q 035626 215 DGYEDWRRHR---SDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGES 291 (457)
Q Consensus 215 e~~ed~kr~k---~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES 291 (457)
.+|++.+... +.+.+-++.|+|+|+|....+..++|+|||+|.++-|++||||++++++.+ |++|+|+||||+
T Consensus 143 ~~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g----~~vdnsslTGes 218 (1019)
T KOG0203|consen 143 SYYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATG----CKVDNSSLTGES 218 (1019)
T ss_pred CCccchhhHHHHHHHhccchhhheeeecceeEEechhhcccccceeeccCCcccceeEEEEecc----eeEecccccccc
Confidence 7777666554 345566899999999999999999999999999999999999999999998 999999999999
Q ss_pred cccccccccccccccccccccceeeeecCC-CCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh
Q 035626 292 NLKTRYARQETASTVFEGSIVSGTIKCEQP-NRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET 370 (457)
Q Consensus 292 ~pk~K~~~~~t~l~~~~~~~~~g~I~~e~p-n~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT 370 (457)
.|..+.+.-.. +.| ......|.+|.+++| .++|+|++||.+|
T Consensus 219 EP~~~~~~~t~----------------~~~~Et~Ni~f~st~~veG---------------------~~~givi~tGd~T 261 (1019)
T KOG0203|consen 219 EPQTRSPEFTH----------------ENPLETRNIAFFSTNCVEG---------------------TGRGIVIATGDRT 261 (1019)
T ss_pred CCccCCccccc----------------cCchhheeeeeeeeEEecc---------------------eEEEEEEecCCce
Confidence 99988653221 111 011124555555555 8999999999999
Q ss_pred HHHH---hhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035626 371 KAML---NSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLW 415 (457)
Q Consensus 371 Ki~~---n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~ 415 (457)
.+++ ........++++++++++++.++..+.+++.+..+++....
T Consensus 262 v~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~vAi~~~i~fF~~~~~~ 309 (1019)
T KOG0203|consen 262 VMGRIASLASGLEDGKTPIAKEIEHFIHIITGVAIFLGISFFILALIL 309 (1019)
T ss_pred EEeehhhhhccCCCCCCcchhhhhchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5543 34456777899999999999999888777776666555443
No 26
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.83 E-value=1.6e-19 Score=201.67 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc------ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCe
Q 035626 206 FVLFVTAIKDGYEDWRRHRSDRNE------NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGI 279 (457)
Q Consensus 206 ~vl~is~ike~~ed~kr~k~d~~i------N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~ 279 (457)
+++++..+.+++|.+.++|+.+.+ ++.+++|+|+|++++++.++|+|||+|.|++||+||||+++++++
T Consensus 211 ~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~----- 285 (741)
T PRK11033 211 MVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPF----- 285 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECc-----
Confidence 444555566778888888876543 477899999999999999999999999999999999999999865
Q ss_pred eEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeE
Q 035626 280 AYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWI 359 (457)
Q Consensus 280 ~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i 359 (457)
+.||||+||||+.|+.|.+.+. .|.|+++.+| .+
T Consensus 286 ~~vdes~lTGEs~Pv~k~~Gd~-------------------------V~aGt~~~~G---------------------~~ 319 (741)
T PRK11033 286 ASFDESALTGESIPVERATGEK-------------------------VPAGATSVDR---------------------LV 319 (741)
T ss_pred EEeecccccCCCCCEecCCCCe-------------------------eccCCEEcCc---------------------eE
Confidence 7899999999999999987544 7889988887 89
Q ss_pred EEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035626 360 IGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLW 415 (457)
Q Consensus 360 ~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~ 415 (457)
.+.|+.+|.+| |+.........+++++++.++++..++..++++++++.+++|.++
T Consensus 320 ~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~ 378 (741)
T PRK11033 320 TLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLL 378 (741)
T ss_pred EEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 566666677778899999999999999999999998888877443
No 27
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.82 E-value=2.6e-19 Score=191.68 Aligned_cols=163 Identities=28% Similarity=0.360 Sum_probs=133.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCe
Q 035626 200 SLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGI 279 (457)
Q Consensus 200 ~~~pLl~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~ 279 (457)
.++++++.++....+...++..+...++.+++++++|+|+| ++++++++|+|||+|.+++||.||||++|+++.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~----- 76 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGS----- 76 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEcc-----
Confidence 45677777888888888888888888878899999999999 999999999999999999999999999999873
Q ss_pred eEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeE
Q 035626 280 AYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWI 359 (457)
Q Consensus 280 ~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i 359 (457)
|.||||+|||||.|+.|++.+. .|.|+...+| .+
T Consensus 77 ~~vdes~LTGEs~pv~k~~g~~-------------------------v~~gs~~~~G---------------------~~ 110 (499)
T TIGR01494 77 CFVDESNLTGESVPVLKTAGDA-------------------------VFAGTYVFNG---------------------TL 110 (499)
T ss_pred EEEEcccccCCCCCeeeccCCc-------------------------cccCcEEecc---------------------EE
Confidence 9999999999999999987543 5677777777 67
Q ss_pred EEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 035626 360 IGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRET-LWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 360 ~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i-~~l~~illii~li~~i~~~~ 414 (457)
...|..+|.+| ++..........++++++..+++. .+++.++++++++.+++|.+
T Consensus 111 ~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (499)
T TIGR01494 111 IVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAI 169 (499)
T ss_pred EEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999998 444444444454688999999998 67776667666666665543
No 28
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.82 E-value=3.3e-19 Score=195.73 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCccc-------c--Cccchh--hhHHHHHHHHHHHHHHHHHHHhhcccccc---cc-ee
Q 035626 170 IQFHRVAYLYFLAIAALNQLPPLAV-------F--GRTVSL--FPLLFVLFVTAIKDGYEDWRRHRSDRNEN---NR-EA 234 (457)
Q Consensus 170 eqF~~~~NlyfLiiaIl~~i~~is~-------~--~~~~~~--~pLl~vl~is~ike~~ed~kr~k~d~~iN---~~-~~ 234 (457)
.||+++..+.+++.++++++..+.+ . +|+... +.+++.+++..+-+.+.+++..++...++ +. .+
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a 107 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA 107 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 4788888888888888887642211 1 122111 22333344555545556555555544433 33 47
Q ss_pred EEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccccccccccccccc
Q 035626 235 LVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVS 313 (457)
Q Consensus 235 ~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~ 313 (457)
+|+| +|++++++.++|++||+|.+++||.||||+++++++ +.||||+|||||.|+.|.+....
T Consensus 108 ~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~-----~~VDESaLTGES~PV~K~~g~~~----------- 171 (675)
T TIGR01497 108 KLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGV-----ASVDESAITGESAPVIKESGGDF----------- 171 (675)
T ss_pred EEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcc-----EEEEcccccCCCCceeecCCCCc-----------
Confidence 7886 899999999999999999999999999999999863 89999999999999999865321
Q ss_pred eeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHHHhhcCCCCCCChHHHHH
Q 035626 314 GTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAMLNSAASPSKRSRLENYM 390 (457)
Q Consensus 314 g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~l 390 (457)
...|.||.+.+| ++.+.|..+|.+| |+....+....++|++|..+
T Consensus 172 -----------~~V~aGT~v~~G---------------------~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l 219 (675)
T TIGR01497 172 -----------ASVTGGTRILSD---------------------WLVVECTANPGETFLDRMIALVEGAQRRKTPNEIAL 219 (675)
T ss_pred -----------ceeecCcEEEee---------------------EEEEEEEEecccCHHHHHHHHHHhcccCCChHHHHH
Confidence 016778887777 9999999999999 55555666677789999888
Q ss_pred HHHHHHHHHH
Q 035626 391 NRETLWLSIF 400 (457)
Q Consensus 391 n~~i~~l~~i 400 (457)
+.+..++.++
T Consensus 220 ~~l~~~l~~v 229 (675)
T TIGR01497 220 TILLIALTLV 229 (675)
T ss_pred HHHHHHHHHH
Confidence 8776655443
No 29
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.82 E-value=1.6e-19 Score=196.00 Aligned_cols=151 Identities=11% Similarity=0.159 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhccccc------ccceeEEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEee
Q 035626 212 AIKDGYEDWRRHRSDRNE------NNREALVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQT 284 (457)
Q Consensus 212 ~ike~~ed~kr~k~d~~i------N~~~~~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdt 284 (457)
.+-+++|++.++++.+.+ .+.+++++| +|.+++++.++|++||+|.|++||.||||+++++++ +.|||
T Consensus 65 ~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~-----~~vde 139 (562)
T TIGR01511 65 LLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGE-----SEVDE 139 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECc-----eEEeh
Confidence 334567888777755433 367888888 477799999999999999999999999999999865 78999
Q ss_pred ccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEE
Q 035626 285 MNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVV 364 (457)
Q Consensus 285 s~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV 364 (457)
|.||||+.|+.|.+.+. .|.||++.+| .+...|.
T Consensus 140 s~lTGEs~pv~k~~gd~-------------------------V~aGt~~~~g---------------------~~~~~v~ 173 (562)
T TIGR01511 140 SLVTGESLPVPKKVGDP-------------------------VIAGTVNGTG---------------------SLVVRAT 173 (562)
T ss_pred HhhcCCCCcEEcCCCCE-------------------------EEeeeEECCc---------------------eEEEEEE
Confidence 99999999999987544 7899988887 9999999
Q ss_pred Eecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 365 YAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 365 ~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
.+|.+| |+.........+++++++.++++..+++.++++++++.++.|.
T Consensus 174 ~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~ 225 (562)
T TIGR01511 174 ATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL 225 (562)
T ss_pred EecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 4555555666678999999999999988888887777766654
No 30
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.79 E-value=2.7e-18 Score=194.29 Aligned_cols=156 Identities=14% Similarity=0.183 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHhhccccc------ccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeE
Q 035626 208 LFVTAIKDGYEDWRRHRSDRNE------NNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAY 281 (457)
Q Consensus 208 l~is~ike~~ed~kr~k~d~~i------N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~ 281 (457)
+++..+-+++|.+.+.++.+.+ .+..++++|+|++++++.++|+|||+|.|++||.||||+++++++ +.
T Consensus 293 ~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~-----~~ 367 (834)
T PRK10671 293 IGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGE-----AW 367 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEce-----EE
Confidence 3344455678888887765543 378899999999999999999999999999999999999999864 88
Q ss_pred EeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEE
Q 035626 282 IQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIG 361 (457)
Q Consensus 282 Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~G 361 (457)
||||+||||+.|+.|.+.+. .|.||++.+| .+.+
T Consensus 368 vdeS~lTGEs~pv~k~~gd~-------------------------V~aGt~~~~G---------------------~~~~ 401 (834)
T PRK10671 368 LDEAMLTGEPIPQQKGEGDS-------------------------VHAGTVVQDG---------------------SVLF 401 (834)
T ss_pred EeehhhcCCCCCEecCCCCE-------------------------EEecceecce---------------------eEEE
Confidence 99999999999999987654 7899998887 9999
Q ss_pred EEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 362 VVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 362 vVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~ 414 (457)
.|..+|.+| ++....+.....++++++.++++..+++.++++++++.+++|.+
T Consensus 402 ~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~ 457 (834)
T PRK10671 402 RASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYF 457 (834)
T ss_pred EEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 45555555666679999999999999988888888887777654
No 31
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.2e-17 Score=184.16 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc------ccceeEEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCC
Q 035626 204 LLFVLFVTAIKDGYEDWRRHRSDRNE------NNREALVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDP 276 (457)
Q Consensus 204 Ll~vl~is~ike~~ed~kr~k~d~~i------N~~~~~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~ 276 (457)
-.+++++..+-+++|++.+.++.+.+ .++.+++++ ||+.++++.++|++||+|.+++||+||+|+++++++
T Consensus 177 aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~-- 254 (713)
T COG2217 177 AAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGS-- 254 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCc--
Confidence 34455555566779999888865543 478887776 555889999999999999999999999999999866
Q ss_pred CCeeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeC
Q 035626 277 SGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNT 356 (457)
Q Consensus 277 ~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT 356 (457)
..||||+|||||.|+.|.+.+. .|.||++.+|
T Consensus 255 ---s~vDeS~iTGEs~PV~k~~Gd~-------------------------V~aGtiN~~G-------------------- 286 (713)
T COG2217 255 ---SSVDESMLTGESLPVEKKPGDE-------------------------VFAGTVNLDG-------------------- 286 (713)
T ss_pred ---EEeecchhhCCCCCEecCCCCE-------------------------EeeeEEECCc--------------------
Confidence 6799999999999999998766 8899999988
Q ss_pred CeEEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035626 357 DWIIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLL 417 (457)
Q Consensus 357 ~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~ 417 (457)
.+...|..+|.|| +|....+..+.+++++|+..+++..++..+.++++++.+++|.++..
T Consensus 287 -~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~ 349 (713)
T COG2217 287 -SLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG 349 (713)
T ss_pred -cEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC
Confidence 8889999999999 56667778888899999999999999999889999888887766543
No 32
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.5e-17 Score=176.64 Aligned_cols=237 Identities=21% Similarity=0.216 Sum_probs=143.7
Q ss_pred cccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 035626 145 KYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHR 224 (457)
Q Consensus 145 ~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k 224 (457)
.++||.|+..- ..-+|. ..+.|.-..++..|..++..|+++- ..||.++.-|.. .+..|+---+||.+
T Consensus 173 ~~~~G~N~fdi---~vPtF~-eLFkE~A~aPfFVFQVFcvgLWCLD----eyWYySlFtLfM----li~fE~tlV~Qrm~ 240 (1160)
T KOG0209|consen 173 KHKYGKNKFDI---VVPTFS-ELFKEHAVAPFFVFQVFCVGLWCLD----EYWYYSLFTLFM----LIAFEATLVKQRMR 240 (1160)
T ss_pred HHHhcCCcccc---CCccHH-HHHHHhccCceeeHhHHhHHHHHhH----HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 35699998763 333443 3345555667777888888888874 334444333332 22333334455555
Q ss_pred ccccc-----ccceeEEEeCCEEEEEEccCCcCCcEEEeCC---CCeeeccEEEEeeeCCCCeeEEeeccccCCCccccc
Q 035626 225 SDRNE-----NNREALVLQSDQFHLKKWKNIRAGEVVKICS---DDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTR 296 (457)
Q Consensus 225 ~d~~i-----N~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~---ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K 296 (457)
..+++ .+..+.|+|+++|+.+...||.|||+|.|.. ...||||++||.+| |.||||+|||||.|..|
T Consensus 241 ~lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gs-----ciVnEaMLtGESvPl~K 315 (1160)
T KOG0209|consen 241 TLSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGS-----CIVNEAMLTGESVPLMK 315 (1160)
T ss_pred HHHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecc-----eeechhhhcCCCccccc
Confidence 43332 3667889999999999999999999999976 77899999999877 99999999999999999
Q ss_pred ccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEee-CCeEEEEEEEecchh---HH
Q 035626 297 YARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKN-TDWIIGVVVYAGQET---KA 372 (457)
Q Consensus 297 ~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~n-T~~i~GvVV~TG~dT---Ki 372 (457)
.++.... .+ ..+..+..+.+-..|.||-.++-. |- .-+.++- .+-+.|+|+.||.+| |+
T Consensus 316 E~Ie~~~--~d------~~ld~~~d~k~hVlfGGTkivQht--~p-------~~~slk~pDggc~a~VlrTGFeTSQGkL 378 (1160)
T KOG0209|consen 316 ESIELRD--SD------DILDIDRDDKLHVLFGGTKIVQHT--PP-------KKASLKTPDGGCVAYVLRTGFETSQGKL 378 (1160)
T ss_pred cccccCC--hh------hhcccccccceEEEEcCceEEEec--CC-------ccccccCCCCCeEEEEEeccccccCCce
Confidence 9987642 00 011122222333466676655420 00 0001111 357899999999999 44
Q ss_pred HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 035626 373 MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLLRYKD 421 (457)
Q Consensus 373 ~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~~~~~ 421 (457)
++.+-....+.|.=. +-..++++++++++ .++.+++|....++
T Consensus 379 vRtilf~aervTaNn----~Etf~FILFLlVFA--iaAa~Yvwv~Gskd 421 (1160)
T KOG0209|consen 379 VRTILFSAERVTANN----RETFIFILFLLVFA--IAAAGYVWVEGSKD 421 (1160)
T ss_pred eeeEEecceeeeecc----HHHHHHHHHHHHHH--HHhhheEEEecccC
Confidence 433322222223222 22223333333333 34457778765544
No 33
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.2e-15 Score=163.22 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhcccc------cccceeEEEeCCE-EEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeec
Q 035626 213 IKDGYEDWRRHRSDRN------ENNREALVLQSDQ-FHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTM 285 (457)
Q Consensus 213 ike~~ed~kr~k~d~~------iN~~~~~Vlr~g~-~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts 285 (457)
+..++|...++|+-.. +.+.++.++.+|+ .++|+...|++||+|++.+|++||+|+++++++ ++||||
T Consensus 353 lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gs-----s~VDEs 427 (951)
T KOG0207|consen 353 LGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGS-----SEVDES 427 (951)
T ss_pred HHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCc-----eeechh
Confidence 4456888888886543 3478899999886 889999999999999999999999999999876 899999
Q ss_pred cccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEE
Q 035626 286 NLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVY 365 (457)
Q Consensus 286 ~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~ 365 (457)
.+|||+.|+.|++... ...|+++.+| ..+.-+..
T Consensus 428 ~iTGEs~PV~Kk~gs~-------------------------ViaGsiN~nG---------------------~l~VkaT~ 461 (951)
T KOG0207|consen 428 LITGESMPVPKKKGST-------------------------VIAGSINLNG---------------------TLLVKATK 461 (951)
T ss_pred hccCCceecccCCCCe-------------------------eeeeeecCCc---------------------eEEEEEEe
Confidence 9999999999987655 6688888887 77788899
Q ss_pred ecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035626 366 AGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWLL 417 (457)
Q Consensus 366 TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~~ 417 (457)
+|.|| +|.+..+..+..+.|+|+..+++..++..++++++++.+++|.+...
T Consensus 462 ~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~ 516 (951)
T KOG0207|consen 462 VGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGK 516 (951)
T ss_pred ccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHcc
Confidence 99999 56677778888889999999999999999999999988888877654
No 34
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.12 E-value=9.2e-10 Score=115.33 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=91.3
Q ss_pred eeEEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccccccccccccc
Q 035626 233 EALVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSI 311 (457)
Q Consensus 233 ~~~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~ 311 (457)
..++++ +|+++.+++.+|+.||+|+++.||.+|+|+-++++. .+||||++||||-|+.|++.....
T Consensus 105 ~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~-----asVdESAITGESaPViresGgD~s-------- 171 (681)
T COG2216 105 IARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGV-----ASVDESAITGESAPVIRESGGDFS-------- 171 (681)
T ss_pred HHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeee-----eecchhhccCCCcceeeccCCCcc--------
Confidence 345555 589999999999999999999999999999999855 889999999999999998864421
Q ss_pred cceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchh---HHHHhhcCCCCCCChHHH
Q 035626 312 VSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQET---KAMLNSAASPSKRSRLEN 388 (457)
Q Consensus 312 ~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~ 388 (457)
+ .--||-.+ ++|+..-+...--+| |+....+....++||=|-
T Consensus 172 --s------------VtGgT~v~---------------------SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEI 216 (681)
T COG2216 172 --S------------VTGGTRVL---------------------SDWLKIRITANPGETFLDRMIALVEGAERQKTPNEI 216 (681)
T ss_pred --c------------ccCCcEEe---------------------eeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHH
Confidence 0 11233333 459888887766666 777777777777899887
Q ss_pred HHHHHHHHHHH
Q 035626 389 YMNRETLWLSI 399 (457)
Q Consensus 389 ~ln~~i~~l~~ 399 (457)
-++.+...+.+
T Consensus 217 AL~iLL~~LTl 227 (681)
T COG2216 217 ALTILLSGLTL 227 (681)
T ss_pred HHHHHHHHHHH
Confidence 77766555543
No 35
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=96.86 E-value=0.00061 Score=52.67 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=38.8
Q ss_pred CCCccccccccCcCceecCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Q 035626 137 NDPRKTNDKYEFTGNEIRTSKY-TLITFLPKNLFIQFHRVAYLYFLAIAALNQL 189 (457)
Q Consensus 137 n~~~~~~~~~~yg~N~I~t~Ky-t~~~flp~~L~eqF~~~~NlyfLiiaIl~~i 189 (457)
++.+.+.++.+||.|.+...+. ++| +.+++||.+++++.++++++++++
T Consensus 12 s~~~v~~r~~~~G~N~l~~~~~~s~~----~~~l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 12 SSEEAARRLERYGPNELPPPKKRSPL----LRFLRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCHH----HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334566788999999988764 443 457899999999999999999876
No 36
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=96.62 E-value=0.00066 Score=53.51 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=35.6
Q ss_pred CccccccccCcCceecCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKY-TLITFLPKNLFIQFHRVAYLYFLAIAALN 187 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Ky-t~~~flp~~L~eqF~~~~NlyfLiiaIl~ 187 (457)
.+.+.++.+||+|.+...+- ++| ..+++||..+++++++++++++
T Consensus 24 ~ev~~r~~~~G~N~l~~~~~~s~~----~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 24 EEVEERRKKYGPNELPEPKKKSLW----RIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp HHHHHHHHHHSSSSTTTTTSSSHH----HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccCcHH----HHHHHHHHhHHHHHHHHHHHHC
Confidence 34567888999999976554 444 5579999999999999999875
No 37
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=88.76 E-value=2 Score=48.09 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=90.2
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhhcccccccce--
Q 035626 156 SKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNRE-- 233 (457)
Q Consensus 156 ~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~~iN~~~-- 233 (457)
..|+++.+++.--|.+|-+..++++.+..++..++.-....+|..+++++++.++.-+.|-++.++|.+..+..+-.+
T Consensus 90 n~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse~y~~lt 169 (1051)
T KOG0210|consen 90 NIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSEKYTKLT 169 (1051)
T ss_pred ceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeec
Confidence 479999999999999999999999999999999888888899999999999999999999999999999776554111
Q ss_pred --------eEEEeCCEEEEEEccCCcCCcEEEeCCCCe
Q 035626 234 --------ALVLQSDQFHLKKWKNIRAGEVVKICSDDT 263 (457)
Q Consensus 234 --------~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~ 263 (457)
..-+.=|....+.-.+=+|-|.|.++.-+.
T Consensus 170 r~~~~~~~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~ 207 (1051)
T KOG0210|consen 170 RDGTRREPSSDIKVGDVIIVHKDERVPADMILLRTSDK 207 (1051)
T ss_pred cCCcccccccccccccEEEEecCCcCCcceEEEEccCC
Confidence 112234667778888889999999976553
No 38
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=5.5 Score=44.61 Aligned_cols=37 Identities=3% Similarity=0.036 Sum_probs=33.4
Q ss_pred EeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEee
Q 035626 237 LQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGT 273 (457)
Q Consensus 237 lr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~s 273 (457)
+|||...+++..-|+.||||-+++||..||.|.=++.
T Consensus 161 fRDGhlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 161 FRDGHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred hccCeeeecceeEEEeccEEEecCCccccccccccCC
Confidence 4899999999999999999999999999998866553
No 39
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=64.73 E-value=9.6 Score=45.34 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEee
Q 035626 239 SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGT 273 (457)
Q Consensus 239 ~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~s 273 (457)
-|....+...|.+|-|...++. ..+=+|=-.|-+
T Consensus 138 pGDIv~L~~Gd~VPAD~rLi~~-~~L~VDES~LTG 171 (1053)
T TIGR01523 138 PGDICLLKTGDTIPADLRLIET-KNFDTDEALLTG 171 (1053)
T ss_pred CCCEEEECCCCEeeccEEEEEe-CceEEEchhhcC
Confidence 5788889999999999998874 334444444433
No 40
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=55.30 E-value=13 Score=42.47 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCC
Q 035626 171 QFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNI 250 (457)
Q Consensus 171 qF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL 250 (457)
-++.+.+.+.+++.+..++ ......+.-.++++++..+...+..++.+++.+.+..-.-. ... ...-+
T Consensus 30 ~~~~~~~~~~~lL~~aa~~-----s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~--~~~-----~~~V~ 97 (755)
T TIGR01647 30 FLGFFWNPLSWVMEAAAII-----AIALENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQS--LAP-----KARVL 97 (755)
T ss_pred HHHHHhchHHHHHHHHHHH-----HHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--CCC-----eEEEE
Confidence 3344555554544444433 22223445567777888888889999999998887653311 111 11123
Q ss_pred cCCcEEEeCCCCeeeccEEEEeeeC
Q 035626 251 RAGEVVKICSDDTIPCDVVLLGTSD 275 (457)
Q Consensus 251 ~vGDII~l~~ge~vPAD~vLL~ss~ 275 (457)
+-|....+...|.+|-|++++..-+
T Consensus 98 Rdg~~~~I~~~~Lv~GDiV~l~~Gd 122 (755)
T TIGR01647 98 RDGKWQEIPASELVPGDVVRLKIGD 122 (755)
T ss_pred ECCEEEEEEhhhCcCCCEEEECCCC
Confidence 4588889999999999999997443
No 41
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=49.52 E-value=16 Score=42.92 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=9.5
Q ss_pred CEEEEEEccCCcCCcEEEe
Q 035626 240 DQFHLKKWKNIRAGEVVKI 258 (457)
Q Consensus 240 g~~~~i~~~dL~vGDII~l 258 (457)
|....+...|..|.|.+.+
T Consensus 187 GDiV~l~~Gd~IPaD~~li 205 (941)
T TIGR01517 187 GDIVSLSTGDVVPADGVFI 205 (941)
T ss_pred CCEEEECCCCEecccEEEE
Confidence 4444455555555555544
No 42
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=47.42 E-value=63 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 035626 380 PSKRSRLENYMNRETLWLSI 399 (457)
Q Consensus 380 ~~K~S~le~~ln~~i~~l~~ 399 (457)
+.|+|.+|+...-++.+..+
T Consensus 3 kkkKS~fekiT~v~v~lM~i 22 (35)
T PF13253_consen 3 KKKKSTFEKITMVVVWLMLI 22 (35)
T ss_pred CccccHHHHHHHHHHHHHHH
Confidence 56789998876655444433
No 43
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=42.88 E-value=62 Score=24.36 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 372 AMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVAL 410 (457)
Q Consensus 372 i~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i 410 (457)
.+.|.-..+.+.+.+...+..+.-.+.+++++.++++++
T Consensus 23 ~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 23 YGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred hCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344544455567888888888876666666666655554
No 44
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=42.79 E-value=29 Score=40.48 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=23.8
Q ss_pred CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEe
Q 035626 239 SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLG 272 (457)
Q Consensus 239 ~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ 272 (457)
-|....+...|..|-|.+.++..+ .=.|=-.|-
T Consensus 137 ~GDiv~l~~Gd~IPaDg~ii~g~~-l~VDES~LT 169 (884)
T TIGR01522 137 PGDLVCLSVGDRVPADLRIVEAVD-LSIDESNLT 169 (884)
T ss_pred cCCEEEecCCCEEeeeEEEEEcCc-eEEEccccc
Confidence 588889999999999999887542 224444443
No 45
>PRK11507 ribosome-associated protein; Provisional
Probab=40.51 E-value=34 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.6
Q ss_pred EEEeCCEEEEEEccCCcCCcEEEeCC
Q 035626 235 LVLQSDQFHLKKWKNIRAGEVVKICS 260 (457)
Q Consensus 235 ~Vlr~g~~~~i~~~dL~vGDII~l~~ 260 (457)
.|..||+.+.-.-+.|++||+|.+..
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECC
Confidence 56679999999999999999998855
No 46
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=38.70 E-value=51 Score=24.50 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.4
Q ss_pred ccceeEEEe-CCEEEEEEcc-CCcCCcEEEeCCCCeeec
Q 035626 230 NNREALVLQ-SDQFHLKKWK-NIRAGEVVKICSDDTIPC 266 (457)
Q Consensus 230 N~~~~~Vlr-~g~~~~i~~~-dL~vGDII~l~~ge~vPA 266 (457)
....+.|+. +|+|..++.. +..+||.|.+...+..+.
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 445667775 8999988664 799999999988776653
No 47
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=35.37 E-value=19 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=13.2
Q ss_pred EEEeCCEEEEEEccCCcCCcEEEe
Q 035626 235 LVLQSDQFHLKKWKNIRAGEVVKI 258 (457)
Q Consensus 235 ~Vlr~g~~~~i~~~dL~vGDII~l 258 (457)
.|..||+.+.-.-+.|++||+|.+
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 355688888888899999999998
No 48
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=34.45 E-value=67 Score=38.39 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEE
Q 035626 166 KNLFIQF-HRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHL 244 (457)
Q Consensus 166 ~~L~eqF-~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~ 244 (457)
+.+++-| ..+.+.++++..+. .+. .....++.--++++++..+..+...++++++.++++.... ......
T Consensus 162 ~s~~~ll~~~~~~p~~i~~i~~-~~l----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~----~~~~v~ 232 (1054)
T TIGR01657 162 PSFLELLKEEVLHPFYVFQVFS-VIL----WLLDEYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH----KPQSVI 232 (1054)
T ss_pred CCHHHHHHHHHhchHHHHHHHH-HHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCeeEE
Confidence 4555544 56667766555443 221 2222345667888999999999999999998887765321 122222
Q ss_pred EEccCCcCCcEEEeCCCCeeeccEEEEe--eeCCCCeeEEeeccccC
Q 035626 245 KKWKNIRAGEVVKICSDDTIPCDVVLLG--TSDPSGIAYIQTMNLDG 289 (457)
Q Consensus 245 i~~~dL~vGDII~l~~ge~vPAD~vLL~--ss~~~G~~~Vdts~LdG 289 (457)
+ ++-|....+...|.+|.|+++|+ ..+ .+=+|--.++|
T Consensus 233 V----~Rdg~~~~I~s~eLvpGDiv~l~~~~g~---~iPaD~~ll~g 272 (1054)
T TIGR01657 233 V----IRNGKWVTIASDELVPGDIVSIPRPEEK---TMPCDSVLLSG 272 (1054)
T ss_pred E----EECCEEEEEEcccCCCCCEEEEecCCCC---EecceEEEEeC
Confidence 2 34588899999999999999997 322 24445445555
No 49
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=32.90 E-value=63 Score=37.95 Aligned_cols=32 Identities=3% Similarity=-0.051 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEE
Q 035626 239 SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLL 271 (457)
Q Consensus 239 ~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL 271 (457)
-|....+...|..|-|.+.++. +.+=.|-=.|
T Consensus 185 pGDiV~l~~Gd~IPaDg~li~g-~~l~VDES~L 216 (902)
T PRK10517 185 PGDIIKLAAGDMIPADLRILQA-RDLFVAQASL 216 (902)
T ss_pred CCCEEEECCCCEEeeeEEEEEc-CceEEEecCc
Confidence 6888889999999999888864 3333443333
No 50
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.96 E-value=51 Score=28.25 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred EEeCCEEEEEEccCCcCCcEEEeCCCCee
Q 035626 236 VLQSDQFHLKKWKNIRAGEVVKICSDDTI 264 (457)
Q Consensus 236 Vlr~g~~~~i~~~dL~vGDII~l~~ge~v 264 (457)
|.-||+.. .++.++++||+|.|.-|...
T Consensus 36 V~vNG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 36 VKVNGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred EEECCEEc-ccccccCCCCEEEEEeCCcE
Confidence 33466665 79999999999999877754
No 51
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=30.29 E-value=71 Score=37.33 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=24.2
Q ss_pred CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEee
Q 035626 239 SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGT 273 (457)
Q Consensus 239 ~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~s 273 (457)
-|....+...|..|-|.+.++. +.+=+|--.|-+
T Consensus 151 ~GDiV~l~~Gd~VPaDg~li~g-~~l~VDES~LTG 184 (867)
T TIGR01524 151 PGDLIELAAGDIIPADARVISA-RDLFINQSALTG 184 (867)
T ss_pred CCCEEEECCCCEEcccEEEEec-CceEEEcccccC
Confidence 5788889999999999988864 333445444444
No 52
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=28.82 E-value=29 Score=28.66 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=17.7
Q ss_pred EccCCcCCcEEEe-CCCCeeeccEEE
Q 035626 246 KWKNIRAGEVVKI-CSDDTIPCDVVL 270 (457)
Q Consensus 246 ~~~dL~vGDII~l-~~ge~vPAD~vL 270 (457)
.-.+|.+||.|.+ +.|+.+|-=.-+
T Consensus 46 ~~~~i~~Gd~V~V~raGdVIP~I~~v 71 (82)
T PF03120_consen 46 KELDIRIGDTVLVTRAGDVIPKIVGV 71 (82)
T ss_dssp HHTT-BBT-EEEEEEETTTEEEEEEE
T ss_pred HHcCCCCCCEEEEEECCCccceEeEe
Confidence 4589999999987 889999964333
No 53
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.39 E-value=1.4e+02 Score=35.41 Aligned_cols=176 Identities=13% Similarity=0.202 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEe
Q 035626 204 LLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQ 283 (457)
Q Consensus 204 Ll~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vd 283 (457)
-.++++++.+--...-|+.+++.+.+.+ .++.- ++..=++.|-...|...|-||.|++++... ...+=+|
T Consensus 217 A~cI~iisv~Si~~sv~e~r~qs~rlr~----mv~~~----~~V~V~R~g~~~ti~S~eLVPGDil~i~~~--~~~~PcD 286 (1140)
T KOG0208|consen 217 AFCIVIISVYSIVLSVYETRKQSIRLRS----MVKFT----CPVTVIRDGFWETVDSSELVPGDILYIPPP--GKIMPCD 286 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCC----ceEEEEECCEEEEEeccccccccEEEECCC--CeEeecc
Confidence 4456666766666666666665555432 11222 344556779999999999999999999753 2334455
Q ss_pred eccccC-----CCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCc--cccCCccceEeeceEEeeC
Q 035626 284 TMNLDG-----ESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQ--KFPLSQSNIVLRGCQLKNT 356 (457)
Q Consensus 284 ts~LdG-----ES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~--~~~ls~~NiLlrGs~L~nT 356 (457)
--.++| |+.+.= ++++.+. ...| .|+-.++.+ .......|.||.|+.+-.+
T Consensus 287 a~Li~g~civNEsmLTG-ESVPv~K--------------~~l~-------~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~ 344 (1140)
T KOG0208|consen 287 ALLISGDCIVNESMLTG-ESVPVTK--------------TPLP-------MGTDSLDSITISMSTNSRHTLFCGTKVLQA 344 (1140)
T ss_pred eEEEeCcEEeecccccC-Ccccccc--------------cCCc-------cccccCcCeeechhhcCcceeeccceEEEe
Confidence 555555 444421 1111110 0011 111111111 1234568999999998865
Q ss_pred CeEEEEEEEecchhHHHHhhcCCCCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035626 357 DWIIGVVVYAGQETKAMLNSAASPSKRS----------RLENYMNRETLWLSIFLLVMCLVVALGMGLWLL 417 (457)
Q Consensus 357 ~~i~GvVV~TG~dTKi~~n~~~~~~K~S----------~le~~ln~~i~~l~~illii~li~~i~~~~~~~ 417 (457)
. -|.|...+.+........-+. |.+.++-+-+..++.++.+++++.++...+...
T Consensus 345 r------~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP~~fkfyrds~~fi~~l~~ia~~gfiy~~i~l~ 409 (1140)
T KOG0208|consen 345 R------AYLGGPVLAMVLRTGFSTTKGQLVRSILYPKPVNFKFYRDSFKFILFLVIIALIGFIYTAIVLN 409 (1140)
T ss_pred e------cCCCCceEEEEEeccccccccHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 5 345555544333333222233 334445556677777777777777766555443
No 54
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.81 E-value=44 Score=25.25 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=10.9
Q ss_pred cCCcEEEeCCCCe
Q 035626 251 RAGEVVKICSDDT 263 (457)
Q Consensus 251 ~vGDII~l~~ge~ 263 (457)
++||+|+|+.|-+
T Consensus 2 ~~GDvV~LKSGGp 14 (53)
T PF09926_consen 2 KIGDVVQLKSGGP 14 (53)
T ss_pred CCCCEEEEccCCC
Confidence 6899999998863
No 55
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=25.73 E-value=42 Score=27.91 Aligned_cols=17 Identities=29% Similarity=0.780 Sum_probs=10.8
Q ss_pred EEEEccCCcCCcEEEeC
Q 035626 243 HLKKWKNIRAGEVVKIC 259 (457)
Q Consensus 243 ~~i~~~dL~vGDII~l~ 259 (457)
..++|.+|.||++|.+.
T Consensus 59 t~l~w~~L~VG~~VMvN 75 (85)
T PF12148_consen 59 TILKWDELKVGQVVMVN 75 (85)
T ss_dssp SBE-GGG--TT-EEEEE
T ss_pred EeccHHhCCcccEEEEe
Confidence 45899999999999884
No 56
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.29 E-value=76 Score=27.35 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=8.7
Q ss_pred cCCcCCcEEEeCCC
Q 035626 248 KNIRAGEVVKICSD 261 (457)
Q Consensus 248 ~dL~vGDII~l~~g 261 (457)
++|++||-|....|
T Consensus 51 ~~Lk~Gd~VvT~gG 64 (106)
T PRK05585 51 SSLAKGDEVVTNGG 64 (106)
T ss_pred HhcCCCCEEEECCC
Confidence 46677776665554
No 57
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.02 E-value=69 Score=26.36 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=7.2
Q ss_pred CCcCCcEEEeCCC
Q 035626 249 NIRAGEVVKICSD 261 (457)
Q Consensus 249 dL~vGDII~l~~g 261 (457)
+|++||-|....|
T Consensus 37 ~L~~Gd~VvT~gG 49 (84)
T TIGR00739 37 SLKKGDKVLTIGG 49 (84)
T ss_pred hCCCCCEEEECCC
Confidence 5566665555444
No 58
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=24.78 E-value=79 Score=25.80 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=0.4
Q ss_pred cCCcCCcEEEeCCC
Q 035626 248 KNIRAGEVVKICSD 261 (457)
Q Consensus 248 ~dL~vGDII~l~~g 261 (457)
++|++||-|....|
T Consensus 35 ~~Lk~Gd~VvT~gG 48 (82)
T PF02699_consen 35 ASLKPGDEVVTIGG 48 (82)
T ss_dssp G-------------
T ss_pred HcCCCCCEEEECCc
Confidence 35666665555444
No 59
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.51 E-value=84 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 035626 372 AMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLV 407 (457)
Q Consensus 372 i~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li 407 (457)
.+.|.-..+.+++.+...++.+.-.+.+++++.+++
T Consensus 33 ~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 33 YGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp HSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666677788999999988876666665555544
No 60
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=23.38 E-value=1.1e+02 Score=24.78 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCcCCcEEEeCC---CCe--eeccEEEEeee
Q 035626 249 NIRAGEVVKICS---DDT--IPCDVVLLGTS 274 (457)
Q Consensus 249 dL~vGDII~l~~---ge~--vPAD~vLL~ss 274 (457)
.|..||+|.+.+ .+. -+.|++++...
T Consensus 11 ~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~ 41 (90)
T TIGR02754 11 TLPPGDRIIVVPWLKIFRVPPIGNVVVVRHP 41 (90)
T ss_pred ccCCCCEEEEEEccccCCCCCCCeEEEEecC
Confidence 567888888774 222 35778877643
No 61
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=22.46 E-value=99 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred EEEeCCEEEEEEccCCcCCcEEEeCC
Q 035626 235 LVLQSDQFHLKKWKNIRAGEVVKICS 260 (457)
Q Consensus 235 ~Vlr~g~~~~i~~~dL~vGDII~l~~ 260 (457)
.|..||+.+.-.-+.|+.||+|.+..
T Consensus 38 ~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 38 EVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred eEEECCeeeeccCCEeecCCEEEECC
Confidence 67889999999999999999998753
No 62
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=21.77 E-value=44 Score=29.60 Aligned_cols=21 Identities=43% Similarity=0.407 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCCCccccccc
Q 035626 20 NLGYICSNASSSSSNTDDTLS 40 (457)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ 40 (457)
+.||.|++|+.+.+-.+++.+
T Consensus 4 s~~C~CsdC~ws~~~~~~t~~ 24 (122)
T PF04530_consen 4 SSGCCCSDCQWSGSPTVDTGS 24 (122)
T ss_pred CCCCcCCcccCCCCCcccccc
Confidence 567777777777777777664
No 63
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=21.09 E-value=42 Score=31.81 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEe
Q 035626 207 VLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLG 272 (457)
Q Consensus 207 vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ 272 (457)
++++..+..+.+.++++++.+.++.-. +- ..+..+.-++-|....+...|.+|.|+++|.
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~-~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~ 61 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLN-----NL-NPQKKVTVIRDGRWQKIPSSELVPGDIIILK 61 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----TT-SSSEEEEEEETTEEEEEEGGGT-TTSEEEEE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHh-----cc-CCCccEEEEeccccccchHhhccceeeeecc
Confidence 567777777777777777777665321 10 0111233344467777788888888888875
No 64
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=21.05 E-value=1.1e+02 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.4
Q ss_pred eeEEEeCCEEEEEEccCCcCCcEEEeC
Q 035626 233 EALVLQSDQFHLKKWKNIRAGEVVKIC 259 (457)
Q Consensus 233 ~~~Vlr~g~~~~i~~~dL~vGDII~l~ 259 (457)
...+.++++...+...+|++||.|.+.
T Consensus 73 ~~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 73 LLLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEEecCCcEEEEEHHHCCCCCEEEec
Confidence 344455666778899999999999764
No 65
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=20.58 E-value=3.3e+02 Score=25.15 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=22.5
Q ss_pred ceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Q 035626 151 NEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQL 189 (457)
Q Consensus 151 N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i 189 (457)
|-+..++-.++--+.-.++--.-....+||++..++..+
T Consensus 3 ~~lI~te~r~~p~liD~~lT~~aW~gfi~l~~~~~~~~~ 41 (153)
T PRK14584 3 TPLIFTEQRLLPRLIDIILTALAWFGFLFLLVRGLLEMI 41 (153)
T ss_pred CceEEeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555544444445555566677777777777665
Done!