Query 035626
Match_columns 457
No_of_seqs 244 out of 1723
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 100.0 2E-31 6.8E-36 305.2 19.3 233 139-414 76-322 (1034)
2 2zxe_A Na, K-ATPase alpha subu 100.0 6.2E-32 2.1E-36 309.1 12.8 230 140-413 72-316 (1028)
3 3ar4_A Sarcoplasmic/endoplasmi 100.0 6.6E-31 2.3E-35 299.9 17.3 236 139-412 28-276 (995)
4 1mhs_A Proton pump, plasma mem 100.0 1.6E-29 5.4E-34 285.2 16.1 216 136-409 88-309 (920)
5 3b8c_A ATPase 2, plasma membra 99.9 5.1E-29 1.7E-33 280.6 -15.3 205 139-398 36-248 (885)
6 3j08_A COPA, copper-exporting 99.9 2.1E-23 7.2E-28 228.1 17.5 160 205-415 100-268 (645)
7 3j09_A COPA, copper-exporting 99.9 4.7E-23 1.6E-27 228.1 18.4 161 204-415 177-346 (723)
8 3rfu_A Copper efflux ATPase; a 99.9 2E-23 6.8E-28 231.1 8.8 163 203-416 190-362 (736)
9 2hc8_A PACS, cation-transporti 99.8 3.5E-20 1.2E-24 159.8 9.0 96 228-374 8-103 (113)
10 2kij_A Copper-transporting ATP 99.7 2.9E-18 1E-22 150.1 7.7 96 228-374 14-115 (124)
11 2jmz_A Hypothetical protein MJ 59.8 9.4 0.00032 34.4 4.7 37 231-267 102-138 (186)
12 2lcj_A PAB POLC intein; hydrol 45.2 25 0.00085 31.5 5.0 35 231-265 92-126 (185)
13 1mhs_A Proton pump, plasma mem 40.0 23 0.00077 40.1 4.7 96 166-273 110-206 (920)
14 1d1n_A Initiation factor 2; be 34.1 32 0.0011 28.2 3.5 20 246-265 78-97 (99)
15 2crv_A IF-2MT, translation ini 33.2 40 0.0014 28.6 4.1 22 246-267 85-107 (120)
16 2k1g_A Lipoprotein SPR; soluti 26.3 54 0.0019 28.1 3.8 20 243-262 61-80 (135)
17 1nz9_A Transcription antitermi 25.1 83 0.0028 22.5 4.1 42 249-290 4-45 (58)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.97 E-value=2e-31 Score=305.17 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=190.4
Q ss_pred CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCC--------ccccCccchhhhHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPP--------LAVFGRTVSLFPLLFVLFV 210 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~--------is~~~~~~~~~pLl~vl~i 210 (457)
.+.++++.+||+|.+...|...+ ++.|++||.++++++++++++++++.. +.....+...+++++++++
T Consensus 76 ~ea~~rl~~~G~N~l~~~~~~~~---~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i 152 (1034)
T 3ixz_A 76 SLAAELLLRDGPNALRPPRGTPE---YVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVV 152 (1034)
T ss_pred HHHHHHHHhhCCCCCCCCCCCCH---HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeH
Confidence 34556788999999998776443 245789999999999999888887631 1112345667888999999
Q ss_pred HHHHHHHHHHHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccc
Q 035626 211 TAIKDGYEDWRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNL 287 (457)
Q Consensus 211 s~ike~~ed~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~L 287 (457)
+++.+++++++..++.++++ +.+++|+|||++++|+|++|+|||||.|++||.||||++||++++ +.||||+|
T Consensus 153 ~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~----l~VdES~L 228 (1034)
T 3ixz_A 153 TGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG----RKVDNSSL 228 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCC----ceEEeccc
Confidence 99999999999998766544 678999999999999999999999999999999999999999887 89999999
Q ss_pred cCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEec
Q 035626 288 DGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAG 367 (457)
Q Consensus 288 dGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG 367 (457)
||||.|+.|.+.... ..++...|++|.||.+. .|.+.|+|++||
T Consensus 229 TGES~pv~K~~~~~~-----------------------------------~~~~~~~n~~f~GT~v~-~G~~~~vVv~tG 272 (1034)
T 3ixz_A 229 TGESEPQTRSPECTH-----------------------------------ESPLETRNIAFFSTMCL-EGTAQGLVVNTG 272 (1034)
T ss_pred CCCCCCeeccCCCcc-----------------------------------ccccccccceecceeEE-eecceEEEEeeh
Confidence 999999999764221 12345567777777777 468999999999
Q ss_pred chh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 368 QET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGL 414 (457)
Q Consensus 368 ~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~ 414 (457)
.+| |++.+....+.+++++++.+++++.+++.+.+++|++.++++.+
T Consensus 273 ~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (1034)
T 3ixz_A 273 DRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMC 322 (1034)
T ss_pred hhhHhhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 66667777788899999999999999988888888777766543
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.97 E-value=6.2e-32 Score=309.10 Aligned_cols=230 Identities=17% Similarity=0.129 Sum_probs=189.5
Q ss_pred ccccccccCcCceecCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCc-c-------ccCccchhhhHHHHHHH
Q 035626 140 RKTNDKYEFTGNEIRTSK-YTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPL-A-------VFGRTVSLFPLLFVLFV 210 (457)
Q Consensus 140 ~~~~~~~~yg~N~I~t~K-yt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~i-s-------~~~~~~~~~pLl~vl~i 210 (457)
+.++++.+||+|.+...| .++| +.|++||.++++++++++++++++... . ....+...+++++++++
T Consensus 72 e~~~r~~~~G~N~l~~~~~~~~~----~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i 147 (1028)
T 2zxe_A 72 RAKEILARDGPNSLTPPPTTPEW----IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIV 147 (1028)
T ss_dssp HHHHHHHHHCCSCCCCCCCCCHH----HHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCCCHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 445678899999999875 4444 457899999999999999999876421 1 01234566778889999
Q ss_pred HHHHHHHHHHHHhhcccc---cccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccc
Q 035626 211 TAIKDGYEDWRRHRSDRN---ENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNL 287 (457)
Q Consensus 211 s~ike~~ed~kr~k~d~~---iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~L 287 (457)
+++.+++++++..++.++ +.+.+++|+|+|++++|++++|+|||||.|++||.||||++||++++ |+||||+|
T Consensus 148 ~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~----~~VdeS~L 223 (1028)
T 2zxe_A 148 TGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHG----CKVDNSSL 223 (1028)
T ss_dssp HHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEE----EEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEeeCc----EEEEcCcc
Confidence 999888888776665543 45788999999999999999999999999999999999999999886 99999999
Q ss_pred cCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEec
Q 035626 288 DGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAG 367 (457)
Q Consensus 288 dGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG 367 (457)
||||.|+.|.+.... ..+++.+|++|+||.+.+ |++.|+|++||
T Consensus 224 TGES~pv~K~~~~~~-----------------------------------~~~~~~~n~v~~GT~v~~-G~~~~~V~~tG 267 (1028)
T 2zxe_A 224 TGESEPQTRSPEFSS-----------------------------------ENPLETRNIAFFSTNCVE-GTARGVVVYTG 267 (1028)
T ss_dssp HSCCSCEECCSSCCC-----------------------------------SSTTTCSSEECTTCEEEE-EEEEEEEEECG
T ss_pred CCCCcceecccCCCC-----------------------------------CCcccccceEEeCceEEc-ceEEEEEEEec
Confidence 999999999764320 014567899999999885 79999999999
Q ss_pred chh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 368 QET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMG 413 (457)
Q Consensus 368 ~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~ 413 (457)
.+| |++++....+.++|++++.+++++.+++.+.+++|+++++++.
T Consensus 268 ~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~ 316 (1028)
T 2zxe_A 268 DRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL 316 (1028)
T ss_dssp GGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 4556677788889999999999999999998888888877643
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.97 E-value=6.6e-31 Score=299.86 Aligned_cols=236 Identities=18% Similarity=0.250 Sum_probs=182.1
Q ss_pred CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccC-----ccchhhhHHHHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFG-----RTVSLFPLLFVLFVTAI 213 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~-----~~~~~~pLl~vl~is~i 213 (457)
.+.++++.+||+|++.+.|+..+ ++.|++||+++++++|++++++++++.+...+ .|...+.++++++++++
T Consensus 28 ~e~~~r~~~~G~N~l~~~~~~~~---~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (995)
T 3ar4_A 28 DQVKRHLEKYGHNELPAEEGKSL---WELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAI 104 (995)
T ss_dssp HHHHHHHHHHCCSSCCCCCCCCH---HHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHH
Confidence 34566788999999998775332 25689999999999999999999886543321 33344555556666666
Q ss_pred HHHHHHHHHhhcc---cccccceeEEEeCCE--EEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeecccc
Q 035626 214 KDGYEDWRRHRSD---RNENNREALVLQSDQ--FHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLD 288 (457)
Q Consensus 214 ke~~ed~kr~k~d---~~iN~~~~~Vlr~g~--~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~Ld 288 (457)
...+++++..++. +.+++.+++|+|+|+ .++++|++|+|||||.|++||.||||++|++++. +.|+||||+||
T Consensus 105 i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s--~~l~VdeS~LT 182 (995)
T 3ar4_A 105 VGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKS--TTLRVDQSILT 182 (995)
T ss_dssp HHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECS--SCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEEEEee--ceEEEEccccc
Confidence 6666666544432 344578899999887 6999999999999999999999999999986542 34999999999
Q ss_pred CCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecc
Q 035626 289 GESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQ 368 (457)
Q Consensus 289 GES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~ 368 (457)
|||+|+.|.+.+.. .+ ...+.+.+|++|+||.+.+ |++.|+|++||.
T Consensus 183 GES~pv~K~~~~~~-----------------~~---------------~~~~~~~~~~v~~GT~v~~-G~~~~~V~~tG~ 229 (995)
T 3ar4_A 183 GESVSVIKHTEPVP-----------------DP---------------RAVNQDKKNMLFSGTNIAA-GKALGIVATTGV 229 (995)
T ss_dssp CCCSCEEECCSCCC-----------------CT---------------TCCGGGCTTEECTTCEEEE-CEEEEEEEECGG
T ss_pred CCCcceeccccccC-----------------Cc---------------ccCcccccceEecCCEEEc-ceEEEEEEEcCc
Confidence 99999999864321 01 1123567889999999996 899999999999
Q ss_pred hhHH---HHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 369 ETKA---MLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGM 412 (457)
Q Consensus 369 dTKi---~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~ 412 (457)
+|++ ++.....+.++|++++.+++++.+++.+++++|+++++++
T Consensus 230 ~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (995)
T 3ar4_A 230 STEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN 276 (995)
T ss_dssp GSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9955 4556677888999999999999999888877777665544
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.96 E-value=1.6e-29 Score=285.21 Aligned_cols=216 Identities=14% Similarity=0.141 Sum_probs=176.8
Q ss_pred eCCCccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHH
Q 035626 136 INDPRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKD 215 (457)
Q Consensus 136 ~n~~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike 215 (457)
+...+.+.++.+||+|.+...|+++|. .|++||..+++++++++++++++. +.|...+.+++++++.++.+
T Consensus 88 Ls~~ea~~r~~~~G~N~l~~~~~~~~~----~~l~~f~~~~~~ll~~aai~s~~~-----g~~~~~~~i~~vv~i~~~i~ 158 (920)
T 1mhs_A 88 LTSEEVVQRRRKYGLNQMKEEKENHFL----KFLGFFVGPIQFVMEGAAVLAAGL-----EDWVDFGVICGLLLLNAVVG 158 (920)
T ss_dssp CCSHHHHHHHHHTSSSSCCCCCCSSHH----HHTHHHHHHHHHHHHHHHHHCTTC-----SCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCccCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 344455678889999999998888764 357899999999999999988873 45666677778888899999
Q ss_pred HHHHHHHhhcccccc---cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCc
Q 035626 216 GYEDWRRHRSDRNEN---NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESN 292 (457)
Q Consensus 216 ~~ed~kr~k~d~~iN---~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~ 292 (457)
++++++..++.+.++ +.+++|+|+|+++++++++|+|||||.|++||.||||++|+++++ .+.||||+|||||.
T Consensus 159 ~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~---~l~VDES~LTGES~ 235 (920)
T 1mhs_A 159 FVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDA---FLQVDQSALTGESL 235 (920)
T ss_dssp HHHHHHHHHHHHTTTTCCCSSCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEESS---CCEEBCTTTSSCCC
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEecCc---eeeeeccccCCCCc
Confidence 999999988766654 578999999999999999999999999999999999999999872 17999999999999
Q ss_pred ccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHH
Q 035626 293 LKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKA 372 (457)
Q Consensus 293 pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi 372 (457)
|+.|.+... .|.||++.+| ++.++|++||.+|++
T Consensus 236 PV~K~~gd~-------------------------v~sGT~v~~G---------------------~~~~~V~~tG~~T~~ 269 (920)
T 1mhs_A 236 AVDKHKGDQ-------------------------VFASSAVKRG---------------------EAFVVITATGDNTFV 269 (920)
T ss_dssp CEECCSSCE-------------------------ECSCBCCSCC---------------------CEEEEEEECSTTCST
T ss_pred ceEecCCCe-------------------------eecCceEecc---------------------eEEEEEEEeCCcCHH
Confidence 999875322 5666655554 899999999999966
Q ss_pred HHh---hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 035626 373 MLN---SAASPSKRSRLENYMNRETLWLSIFLLVMCLVVA 409 (457)
Q Consensus 373 ~~n---~~~~~~K~S~le~~ln~~i~~l~~illii~li~~ 409 (457)
++. ....+.+++++++.++++..++++++++++++.+
T Consensus 270 g~I~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~ 309 (920)
T 1mhs_A 270 GRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVW 309 (920)
T ss_dssp TTTTSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 4456677899999999999888777666655443
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.92 E-value=5.1e-29 Score=280.59 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=160.1
Q ss_pred CccccccccCcCceecCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHccCCcc--ccCccchhhhHHHHHHHHHHHHH
Q 035626 139 PRKTNDKYEFTGNEIRTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLA--VFGRTVSLFPLLFVLFVTAIKDG 216 (457)
Q Consensus 139 ~~~~~~~~~yg~N~I~t~Kyt~~~flp~~L~eqF~~~~NlyfLiiaIl~~i~~is--~~~~~~~~~pLl~vl~is~ike~ 216 (457)
.+.++++.+||+|++..+++++|.. |++||..+++++++++++++++.... ....|...+.+++++++.++.++
T Consensus 36 ~e~~~r~~~~G~N~l~~~~~~~~~~----~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~ 111 (885)
T 3b8c_A 36 QEGEDRIQIFGPNKLEEKKESKLLK----FLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISF 111 (885)
T ss_dssp HHHHHHSSSCCSCCTTTTCCCTTSS----TTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTT
T ss_pred HHHHHHHHhcCCCccCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999988877754 36788888888889999988875321 11245555666667777777677
Q ss_pred HHHHHHhhcccc---cccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcc
Q 035626 217 YEDWRRHRSDRN---ENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNL 293 (457)
Q Consensus 217 ~ed~kr~k~d~~---iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~p 293 (457)
+++++..++.++ +.+.+++|+|||+++++++++|+|||||.|++||.||||++|+++++ |+||||+|||||.|
T Consensus 112 ~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~----l~VdES~LTGES~P 187 (885)
T 3b8c_A 112 IEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDP----LKVDQSALTGESLP 187 (885)
T ss_dssp TTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSC----BCCCCCSTTCCSSC
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcCc----ccccccccCCCCcc
Confidence 777666655433 34778999999999999999999999999999999999999999875 78999999999999
Q ss_pred cccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHH
Q 035626 294 KTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAM 373 (457)
Q Consensus 294 k~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~ 373 (457)
+.|.+.+. .|.||.+.+| ++.|+|++||.+|.++
T Consensus 188 v~K~~g~~-------------------------v~~GT~v~~G---------------------~~~~~V~~tG~~T~~g 221 (885)
T 3b8c_A 188 VTKHPGQE-------------------------VFSGSTCKQG---------------------EIEAVVIATGVHTFFG 221 (885)
T ss_dssp CCBSSCCC-------------------------CCSCCCCCSC---------------------CCCCBCCSCTTTTTST
T ss_pred eEecCCCc-------------------------cccCeEEeee---------------------EEEEEEEEcCcccHHH
Confidence 99875322 5666665555 8999999999999665
Q ss_pred Hh---hcCCCCCCChHHHHHHHHHHHHH
Q 035626 374 LN---SAASPSKRSRLENYMNRETLWLS 398 (457)
Q Consensus 374 ~n---~~~~~~K~S~le~~ln~~i~~l~ 398 (457)
+. ... ..+++++++.++++..+++
T Consensus 222 ~i~~lv~~-~~~~~~lq~~~~~i~~~~~ 248 (885)
T 3b8c_A 222 KAAHLVDS-TNQVGHFQKVLTAIGNFCI 248 (885)
T ss_dssp TCCCSCCS-CSCCSTTTTTTHHHHHHHH
T ss_pred HHHHHHhc-ccccChHHHHHHHHHHHHH
Confidence 53 333 4577999999999987643
No 6
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.90 E-value=2.1e-23 Score=228.15 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc------cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCC
Q 035626 205 LFVLFVTAIKDGYEDWRRHRSDRNEN------NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSG 278 (457)
Q Consensus 205 l~vl~is~ike~~ed~kr~k~d~~iN------~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G 278 (457)
++++++..+.+++|++.++++++.++ +.+++|+|+|+++++++++|+|||+|.|++||.||||++|++++
T Consensus 100 ~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~---- 175 (645)
T 3j08_A 100 VLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE---- 175 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECc----
Confidence 34444456667799999999877654 67899999999999999999999999999999999999999754
Q ss_pred eeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCe
Q 035626 279 IAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDW 358 (457)
Q Consensus 279 ~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~ 358 (457)
|+||||+|||||.|+.|.+.+. .|.|+++.+| +
T Consensus 176 -~~VdeS~LTGES~Pv~K~~g~~-------------------------v~~Gt~~~~g---------------------~ 208 (645)
T 3j08_A 176 -SYVDESMISGEPVPVLKSKGDE-------------------------VFGATINNTG---------------------V 208 (645)
T ss_dssp -EEEECHHHHCCSSCEEECTTCE-------------------------ECTTCEECSS---------------------C
T ss_pred -EEEEcccccCCCCceecCCCCE-------------------------eeccEEEecC---------------------c
Confidence 8999999999999999976433 5667666655 9
Q ss_pred EEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035626 359 IIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLW 415 (457)
Q Consensus 359 i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~ 415 (457)
+.+.|++||.+| |++++....+.+++++++.+++++.+++.+++++++++++.|.++
T Consensus 209 ~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~ 268 (645)
T 3j08_A 209 LKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFI 268 (645)
T ss_dssp EEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred EEEEEEEcCCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 677778888889999999999999999998888888877665443
No 7
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.90 E-value=4.7e-23 Score=228.06 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc------cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCC
Q 035626 204 LLFVLFVTAIKDGYEDWRRHRSDRNEN------NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPS 277 (457)
Q Consensus 204 Ll~vl~is~ike~~ed~kr~k~d~~iN------~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~ 277 (457)
.++++++..+.+++|++.++++++.++ +.+++|+|+|+++++++++|+|||+|.|++||.||||++|++++
T Consensus 177 ~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~--- 253 (723)
T 3j09_A 177 SVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE--- 253 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECC---
Confidence 344444556677799999999877655 67899999999999999999999999999999999999999754
Q ss_pred CeeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCC
Q 035626 278 GIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTD 357 (457)
Q Consensus 278 G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~ 357 (457)
++||||+|||||.|+.|.+.+. .|.|++..+|
T Consensus 254 --~~VdeS~LTGES~pv~K~~g~~-------------------------v~~Gt~~~~g--------------------- 285 (723)
T 3j09_A 254 --SYVDESMISGEPVPVLKSKGDE-------------------------VFGATINNTG--------------------- 285 (723)
T ss_dssp --EEEECHHHHCCSSCEEECTTCE-------------------------ECTTCEECSS---------------------
T ss_pred --eEEecccccCCCcceeecCCCe-------------------------eccceEEecC---------------------
Confidence 8999999999999999976433 5666666655
Q ss_pred eEEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035626 358 WIIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLW 415 (457)
Q Consensus 358 ~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~ 415 (457)
++.+.|++||.+| |++++......+++++++.+++++.+++.++++++++++++|+++
T Consensus 286 ~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~ 346 (723)
T 3j09_A 286 VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFI 346 (723)
T ss_dssp CEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred cEEEEEEEecCccHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 677778888889999999999999999999888888887765443
No 8
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-23 Score=231.10 Aligned_cols=163 Identities=11% Similarity=0.175 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccc------cceeEEEe-CCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeC
Q 035626 203 PLLFVLFVTAIKDGYEDWRRHRSDRNEN------NREALVLQ-SDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSD 275 (457)
Q Consensus 203 pLl~vl~is~ike~~ed~kr~k~d~~iN------~~~~~Vlr-~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~ 275 (457)
...+++++..+..++|.+.++++.+.++ +.+++++| +|+++++++++|+|||+|+|++||.||||++|++++
T Consensus 190 ~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~- 268 (736)
T 3rfu_A 190 AAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGR- 268 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECc-
Confidence 3445555566677799999999776553 77888888 999999999999999999999999999999999754
Q ss_pred CCCeeEEeeccccCCCcccccccccccccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEee
Q 035626 276 PSGIAYIQTMNLDGESNLKTRYARQETASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKN 355 (457)
Q Consensus 276 ~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~n 355 (457)
++||||+|||||.|+.|.+.+. .|.||++.+|
T Consensus 269 ----~~VDES~LTGES~Pv~K~~gd~-------------------------v~~Gt~~~~G------------------- 300 (736)
T 3rfu_A 269 ----SFVDESMVTGEPIPVAKEASAK-------------------------VIGATINQTG------------------- 300 (736)
T ss_dssp ----EEEECSSSTTCSSCEEECTTCE-------------------------ECTTCEEESC-------------------
T ss_pred ----eEeeecccCCccccEEeccCCc-------------------------CCCceEeccc-------------------
Confidence 8999999999999999987543 6778877776
Q ss_pred CCeEEEEEEEecchh---HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035626 356 TDWIIGVVVYAGQET---KAMLNSAASPSKRSRLENYMNRETLWLSIFLLVMCLVVALGMGLWL 416 (457)
Q Consensus 356 T~~i~GvVV~TG~dT---Ki~~n~~~~~~K~S~le~~ln~~i~~l~~illii~li~~i~~~~~~ 416 (457)
++.+.|++||.+| |++++....+.+++++++.++++..+++.++++++++++++|.++.
T Consensus 301 --~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~ 362 (736)
T 3rfu_A 301 --SFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLG 362 (736)
T ss_dssp --CCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --eEEEEEEEechhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8889999999999 6666666777788999999999999999999999999998887764
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.81 E-value=3.5e-20 Score=159.76 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=85.4
Q ss_pred ccccceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccccccccc
Q 035626 228 NENNREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQETASTVF 307 (457)
Q Consensus 228 ~iN~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~t~l~~~ 307 (457)
.+.+..++|+|+|+++++++++|+|||+|.|++|+.||||++|++++ +.||||+|||||.|+.|.+.+.
T Consensus 8 ~l~p~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~-----~~vdeS~LTGEs~pv~k~~g~~------ 76 (113)
T 2hc8_A 8 GLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-----SYVDESMISGEPVPVLKSKGDE------ 76 (113)
T ss_dssp HHSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC-----EEEECHHHHCCSSCEEECTTCE------
T ss_pred cCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEce-----EEEEccccCCCCccEEECCCCE------
Confidence 45578899999999999999999999999999999999999999864 8999999999999999976433
Q ss_pred cccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHH
Q 035626 308 EGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAML 374 (457)
Q Consensus 308 ~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~ 374 (457)
.|.|+++.+| .+.+.|++||.+|.+.+
T Consensus 77 -------------------v~aGt~~~~G---------------------~~~~~V~~~g~~T~~~~ 103 (113)
T 2hc8_A 77 -------------------VFGATINNTG---------------------VLKIRATRVGGETLLAQ 103 (113)
T ss_dssp -------------------ECTTCEECSS---------------------CEEEEEEECGGGSHHHH
T ss_pred -------------------EEeCCEEeec---------------------eEEEEEEEecCcCHHHH
Confidence 7788888777 89999999999996544
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=150.06 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=82.9
Q ss_pred ccccceeEEEeCCE------EEEEEccCCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCCCcccccccccc
Q 035626 228 NENNREALVLQSDQ------FHLKKWKNIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGESNLKTRYARQE 301 (457)
Q Consensus 228 ~iN~~~~~Vlr~g~------~~~i~~~dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGES~pk~K~~~~~ 301 (457)
.+.+..++|+|+|. +++++.++|+|||+|.|++|+.||||++|++++ +.||||+|||||.|+.|.+...
T Consensus 14 ~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~-----~~vdeS~LTGEs~pv~k~~g~~ 88 (124)
T 2kij_A 14 SLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH-----SMVDESLITGEAMPVAKKPGST 88 (124)
T ss_dssp HTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCC-----CEEECTTTTCCSSCEECCTTEE
T ss_pred ccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEcc-----EEEEeccccCCCccEEeCCCCE
Confidence 44578899999653 688999999999999999999999999999865 6899999999999999976433
Q ss_pred cccccccccccceeeeecCCCCCceeeeeEEEecCccccCCccceEeeceEEeeCCeEEEEEEEecchhHHHH
Q 035626 302 TASTVFEGSIVSGTIKCEQPNRNVYEFTANMEFNGQKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAML 374 (457)
Q Consensus 302 t~l~~~~~~~~~g~I~~e~pn~~l~~F~Gtl~l~g~~~~ls~~NiLlrGs~L~nT~~i~GvVV~TG~dTKi~~ 374 (457)
.|.|+++.+| .+.+.|+.||.+|.+.+
T Consensus 89 -------------------------v~aGt~~~~G---------------------~~~~~v~~~g~~T~~~~ 115 (124)
T 2kij_A 89 -------------------------VIAGSINQNG---------------------SLLICATHVGADTTLSQ 115 (124)
T ss_dssp -------------------------ECTTCEEESS---------------------CCEEEECSCTTTCHHHH
T ss_pred -------------------------EEcCCEEeee---------------------EEEEEEEEecccCHHHH
Confidence 7788888777 88999999999996554
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=59.84 E-value=9.4 Score=34.39 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=29.5
Q ss_pred cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeeecc
Q 035626 231 NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIPCD 267 (457)
Q Consensus 231 ~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vPAD 267 (457)
+-+..+.++|++..+...+|++||.|.+..+..++.|
T Consensus 102 ~Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~ 138 (186)
T 2jmz_A 102 DHPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD 138 (186)
T ss_dssp TCEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred CCEEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence 4566777889999999999999999988766555443
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=45.24 E-value=25 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=28.5
Q ss_pred cceeEEEeCCEEEEEEccCCcCCcEEEeCCCCeee
Q 035626 231 NREALVLQSDQFHLKKWKNIRAGEVVKICSDDTIP 265 (457)
Q Consensus 231 ~~~~~Vlr~g~~~~i~~~dL~vGDII~l~~ge~vP 265 (457)
..+..+.++|+...+...+|++||.|.+..++..|
T Consensus 92 ~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~~ 126 (185)
T 2lcj_A 92 DHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 126 (185)
T ss_dssp SSEEEEEETTEEEEEEGGGCCTTCEEEECCCCCSC
T ss_pred CCEEEEecCCeEEEEEHHHCCCCCEEEEccccccc
Confidence 45566778999999999999999999987766433
No 13
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=40.04 E-value=23 Score=40.05 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=61.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHccCCccccCccchhhhHHHHHHHHHHHHHHHHHHHhhcccccccceeEEEeCCEEEE
Q 035626 166 KNLFIQFHRV-AYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLFVTAIKDGYEDWRRHRSDRNENNREALVLQSDQFHL 244 (457)
Q Consensus 166 ~~L~eqF~~~-~NlyfLiiaIl~~i~~is~~~~~~~~~pLl~vl~is~ike~~ed~kr~k~d~~iN~~~~~Vlr~g~~~~ 244 (457)
..+|..|-.. .+.+.+++.+..++ ....-.+...++++++..+...++.++++++.+.+..-+-.. ..
T Consensus 110 ~~~~~~~l~~f~~~~~~ll~~aai~-----s~~~g~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~--~~---- 178 (920)
T 1mhs_A 110 ENHFLKFLGFFVGPIQFVMEGAAVL-----AAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTL--AL---- 178 (920)
T ss_dssp CSSHHHHTHHHHHHHHHHHHHHHHH-----CTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--CS----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CC----
Confidence 3456555433 33333333333332 222334566777888888889999999999988876644211 11
Q ss_pred EEccCCcCCcEEEeCCCCeeeccEEEEee
Q 035626 245 KKWKNIRAGEVVKICSDDTIPCDVVLLGT 273 (457)
Q Consensus 245 i~~~dL~vGDII~l~~ge~vPAD~vLL~s 273 (457)
...=++-|....+...+.+|.|+++|..
T Consensus 179 -~a~V~RdG~~~~I~~~eLv~GDiV~l~~ 206 (920)
T 1mhs_A 179 -KAVVLRDGTLKEIEAPEVVPGDILQVEE 206 (920)
T ss_dssp -SCEEECSSSEEECCTTTSCTTSEEEECT
T ss_pred -EEEEEECCEEEEEEHHHcCCCCEEEeCC
Confidence 1122356888999999999999999974
No 14
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=34.14 E-value=32 Score=28.21 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=15.7
Q ss_pred EccCCcCCcEEEeCCCCeee
Q 035626 246 KWKNIRAGEVVKICSDDTIP 265 (457)
Q Consensus 246 ~~~dL~vGDII~l~~ge~vP 265 (457)
.|.|+++||+|....-..+|
T Consensus 78 ~~~dik~GD~Ie~ye~~ev~ 97 (99)
T 1d1n_A 78 NFNDIKEGDVIEAYVMQEVA 97 (99)
T ss_dssp TCSSCSSCSEEEEECCSCCC
T ss_pred CcCCCCCCCEEEEEEEEEEc
Confidence 68899999999876655554
No 15
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.23 E-value=40 Score=28.57 Aligned_cols=22 Identities=18% Similarity=0.432 Sum_probs=18.2
Q ss_pred Ecc-CCcCCcEEEeCCCCeeecc
Q 035626 246 KWK-NIRAGEVVKICSDDTIPCD 267 (457)
Q Consensus 246 ~~~-dL~vGDII~l~~ge~vPAD 267 (457)
.+. |+++||+|....-..+|..
T Consensus 85 ~fniDik~GDiIE~ye~~ev~r~ 107 (120)
T 2crv_A 85 EEKVEFKPGDQVICYEENKVPTK 107 (120)
T ss_dssp CTTSCCCTTEEEEEECCSCCCCC
T ss_pred cCCCCCCCCCEEEEEEEEEEeeE
Confidence 678 9999999988777777765
No 16
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=26.30 E-value=54 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.4
Q ss_pred EEEEccCCcCCcEEEeCCCC
Q 035626 243 HLKKWKNIRAGEVVKICSDD 262 (457)
Q Consensus 243 ~~i~~~dL~vGDII~l~~ge 262 (457)
..|+..+++|||+|....+.
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~ 80 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp EEECGGGCCTTEEEEEEETT
T ss_pred cEecHHHccCCcEEEECCCC
Confidence 35788999999999987654
No 17
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=25.11 E-value=83 Score=22.46 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCcCCcEEEeCCCCeeeccEEEEeeeCCCCeeEEeeccccCC
Q 035626 249 NIRAGEVVKICSDDTIPCDVVLLGTSDPSGIAYIQTMNLDGE 290 (457)
Q Consensus 249 dL~vGDII~l~~ge~vPAD~vLL~ss~~~G~~~Vdts~LdGE 290 (457)
++.+||.|++..|..-=-.+.+.+-....+.+.|.-+++..|
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~ 45 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRE 45 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCE
Confidence 578999999999988778888888776667787876655444
Done!