Your job contains 1 sequence.
>035627
RILFSFTPEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTREL
FYSFHRDEIPVESVMHKCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMK
IISSMRLISLDQKTRVRFGDLPDIEPQETAAQEQEDQLKAKRMLWKKNISPLDVSREEGC
MTRFKALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQKRN
QKLRQLLFNLKSTALLALRFLKGKLEPSKILDMSPNELNEGLTAEETAKEESDESEQMQM
TDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYASRNEASSLTIDGRGS
AAKSIGIASLAAAKFDSLEKNLSSPREFEKSANDLLKKSSEAYMPVLEAHRSFSKSKTEE
NPDSSKVKKANRQS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035627
(434 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123136 - symbol:AT4G11560 species:3702 "Arabi... 481 2.7e-90 2
TAIR|locus:2040209 - symbol:AT2G25120 species:3702 "Arabi... 385 1.2e-35 1
TAIR|locus:2121601 - symbol:AT4G23120 species:3702 "Arabi... 343 3.3e-31 1
TAIR|locus:2097134 - symbol:AT3G43990 species:3702 "Arabi... 321 7.1e-29 1
TAIR|locus:2097915 - symbol:SUO "'shuttle' in chinese" sp... 138 4.8e-06 2
TAIR|locus:2097925 - symbol:AT3G48060 species:3702 "Arabi... 138 7.6e-06 2
TAIR|locus:2137256 - symbol:AT4G04260 species:3702 "Arabi... 123 1.3e-05 1
TAIR|locus:2120693 - symbol:EBS "EARLY BOLTING IN SHORT D... 121 5.9e-05 1
UNIPROTKB|E1BNH8 - symbol:E1BNH8 "Uncharacterized protein... 129 0.00017 1
UNIPROTKB|E7EVG2 - symbol:PBRM1 "Protein polybromo-1" spe... 125 0.00041 1
MGI|MGI:1923998 - symbol:Pbrm1 "polybromo 1" species:1009... 125 0.00046 1
UNIPROTKB|Q86U86 - symbol:PBRM1 "Protein polybromo-1" spe... 125 0.00048 1
UNIPROTKB|F1NLL8 - symbol:PBRM1 "Protein polybromo-1" spe... 122 0.00097 1
UNIPROTKB|Q90941 - symbol:PBRM1 "Protein polybromo-1" spe... 122 0.00097 1
UNIPROTKB|E2RRR3 - symbol:PBRM1 "Uncharacterized protein"... 122 0.00097 1
>TAIR|locus:2123136 [details] [associations]
symbol:AT4G11560 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
InterPro:IPR001025 InterPro:IPR003618 Pfam:PF01426 Pfam:PF07500
PROSITE:PS51038 PROSITE:PS51321 SMART:SM00439 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 HOGENOM:HOG000237923
EMBL:AY080679 EMBL:AY133747 IPI:IPI00528925 RefSeq:NP_192893.2
UniGene:At.44003 ProteinModelPortal:Q8RXT5 PaxDb:Q8RXT5
PRIDE:Q8RXT5 EnsemblPlants:AT4G11560.1 GeneID:826760
KEGG:ath:AT4G11560 TAIR:At4g11560 eggNOG:NOG282987
InParanoid:Q8RXT5 OMA:KELDPPV PhylomeDB:Q8RXT5
ProtClustDB:CLSN2690291 Genevestigator:Q8RXT5 Uniprot:Q8RXT5
Length = 587
Score = 481 (174.4 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 93/171 (54%), Positives = 116/171 (67%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
PED +QKPY A IKDITQ++DGSMM+ G+WFY PEEA+++GGGNW S DTRELFYSFHRD
Sbjct: 141 PEDKSQKPYVAIIKDITQTKDGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYSFHRD 200
Query: 68 EIPVESVMHKCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSMRL 127
E+P ESVMH+CVV+FVP HK LP K +PG ++ L K + +
Sbjct: 201 EVPAESVMHRCVVYFVPAHKQLPKRKNNPGFIVRKVYDTVEKKLWKLTDKDYEDSKQREI 260
Query: 128 ISLDQKTRVRFGDLPDIEPQETAAQEQEDQLKAKRMLWKKNISPLDVSREE 178
L +KT GDLPD+E ++ +QE+ LKAKR K NISP+DV REE
Sbjct: 261 DVLVKKTMNVLGDLPDLESEDMLV-DQENVLKAKRSFRKVNISPVDVRREE 310
Score = 439 (159.6 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 100/193 (51%), Positives = 122/193 (63%)
Query: 207 NGNS--FLWPDTAIAAVTALEKASHDALSSDFQKRNQKLRQLLFNLKSTALLALRFLKGK 264
NG FLWPD A+ V ALE ASH +L+SDFQK NQK+R L+FNLK+TALLA R L G+
Sbjct: 392 NGKDEKFLWPDAAVPQVCALENASHASLASDFQKYNQKMRTLVFNLKNTALLARRLLNGE 451
Query: 265 LEPSKILDMSPNELNEGLXXXXXXXXXXXXXXQMQMTDARCSRCNECKVGLRDIIQAGLG 324
LEP+ IL+MSP EL EGL +MQMT RCSRC++ VGLRDIIQAG G
Sbjct: 452 LEPATILNMSPTELKEGLTADETTKKEPDDADRMQMTSVRCSRCSQLTVGLRDIIQAGHG 511
Query: 325 DRYQQLSKALGVYCHGHSWYASRNEASSLTIDGRGSAAKSIGIASLAAAKFDSLEKNLSS 384
DRYQ V C G+SWYASR+E S+LTI + + + +EKNL+S
Sbjct: 512 DRYQLEC----VDC-GYSWYASRDEVSTLTI---------VTDKPAQGTEKEDIEKNLTS 557
Query: 385 PREFEKSANDLLK 397
PRE K ++ LK
Sbjct: 558 PRETNKPKDEALK 570
Score = 67 (28.6 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 143 DIEPQETAAQEQEDQLKAKRMLWKKNISPLDVSREEGCMTRFKALTRETYRDKWLERLLQ 202
+I P + +E++ LKA+ IS S + +F +LT + +RDK L +LL+
Sbjct: 300 NISPVDVR-REEDASLKAETPGSGAGIS----SEHYAILEKFDSLTGDAHRDKCLGKLLE 354
Query: 203 GLQH 206
+QH
Sbjct: 355 AVQH 358
Score = 38 (18.4 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 347 RNEASSLTIDGRGSAAKSIGIASLAAA---KFDSL 378
R E +SL + GS A GI+S A KFDSL
Sbjct: 308 REEDASLKAETPGSGA---GISSEHYAILEKFDSL 339
>TAIR|locus:2040209 [details] [associations]
symbol:AT2G25120 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038 SMART:SM00439
EMBL:CP002685 GO:GO:0003677 IPI:IPI00531195 RefSeq:NP_180084.1
UniGene:At.52905 ProteinModelPortal:F4IRK4
EnsemblPlants:AT2G25120.1 GeneID:817050 KEGG:ath:AT2G25120
OMA:KKDCEEK PhylomeDB:F4IRK4 Uniprot:F4IRK4
Length = 380
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 91/255 (35%), Positives = 129/255 (50%)
Query: 8 PEDTNQKPYAASIKDI-TQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHR 66
P+D N KPY A IKDI +++ + + WFY PE+ D+K G W S D+R LFYSFHR
Sbjct: 106 PDDPNSKPYCAIIKDIYIPNKEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHR 165
Query: 67 DEIPVESVMHKCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSMR 126
DE+ ESV HKCVV+FVP +K +PN ++HP + K +
Sbjct: 166 DEVFAESVKHKCVVNFVPENKQIPNRREHPCFIVQNVYDFVKKKVRKFTDKNFDVHQKNE 225
Query: 127 LISLDQKTRVRFGDLPDIEPQETAAQEQEDQLKAKRMLWKKNISPLDVSREEGCMTRFKA 186
+ L KT +R GDLPDIE + K KR + +K SP + + + F
Sbjct: 226 IDRLVAKTSLRLGDLPDIEKDQVTKTS-----KGKRTVQRK--SPKTSTVYKSILEDFDL 278
Query: 187 LTRETYRDKWLERLLQGLQHN----------GNSFLWPDTAIAAVTALEKASHDALSSDF 236
LT ++ RDK L LL+ ++H + WPD + V ALE +D+++ D
Sbjct: 279 LTGDSDRDKRLGELLEAVKHECRTSKKKGARDDDSYWPDDVVPVVRALEHVFYDSMAEDM 338
Query: 237 QKRNQKLRQLLFNLK 251
K + KL L+ LK
Sbjct: 339 SKYHHKLEILVDELK 353
>TAIR|locus:2121601 [details] [associations]
symbol:AT4G23120 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
EMBL:AL031018 EMBL:AL161558 EMBL:AL022347 IPI:IPI00520892
PIR:T04829 RefSeq:NP_194043.1 UniGene:At.54486
ProteinModelPortal:O65464 SMR:O65464 PaxDb:O65464
EnsemblPlants:AT4G23120.1 GeneID:828411 KEGG:ath:AT4G23120
TAIR:At4g23120 eggNOG:NOG239021 HOGENOM:HOG000237923
InParanoid:O65464 OMA:KLEWRPE PhylomeDB:O65464
ProtClustDB:CLSN2683146 ArrayExpress:O65464 Genevestigator:O65464
Uniprot:O65464
Length = 360
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 92/263 (34%), Positives = 139/263 (52%)
Query: 8 PEDTNQKPYAASIKDI-TQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHR 66
PED +KPY A IKDI TQ ++G + + +W Y PEE ++K GNW S +R+LFYSFHR
Sbjct: 69 PED-GEKPYVAIIKDIYTQRKEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDLFYSFHR 127
Query: 67 DEIPVESVMHKCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSMR 126
DE+ ESV C+VHFV +K +PN ++HPG + L +
Sbjct: 128 DEVFAESVKDDCIVHFVQENKQIPNRRKHPGFIVQHVYDNVKKKLRKLTFNGFDLQQKRE 187
Query: 127 LISLDQKTRVRFGDLPDIEPQETAAQEQEDQL-KAKRMLWKKNI-SPLDVSREEG----- 179
+ +KT +R G L DI +EQ+ + ++KR + + I ++ SRE
Sbjct: 188 IDHFVEKTILRIGHLRDI------VKEQKTLISRSKRTVPQSYIIKAVETSRESNNVVNS 241
Query: 180 CMTRFKALTRETYRDKWLERLLQGLQHN---------GN--SFLWPDTAIAAVTALEKAS 228
+ F LT ++ RDK LE LL+ ++ G+ SF WP+ ++ V+ALE+A
Sbjct: 242 ILESFDLLTGDSDRDKSLEELLEVVKPKCRTSRKKQAGDYDSF-WPNDVVSVVSALEQAL 300
Query: 229 HDALSSDFQKRNQKLRQLLFNLK 251
+D+L D K + K+ L+ LK
Sbjct: 301 YDSLKDDIAKYSNKVEILVGKLK 323
>TAIR|locus:2097134 [details] [associations]
symbol:AT3G43990 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001025 InterPro:IPR003618 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.472.30 EMBL:AL163975 HOGENOM:HOG000237923
ProtClustDB:CLSN2683146 IPI:IPI00530281 PIR:T48953
RefSeq:NP_189985.1 UniGene:At.53714 ProteinModelPortal:Q9LXW1
SMR:Q9LXW1 PaxDb:Q9LXW1 PRIDE:Q9LXW1 EnsemblPlants:AT3G43990.1
GeneID:823516 KEGG:ath:AT3G43990 TAIR:At3g43990 eggNOG:NOG279418
OMA:KCERMSS PhylomeDB:Q9LXW1 Genevestigator:Q9LXW1 Uniprot:Q9LXW1
Length = 380
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 87/273 (31%), Positives = 136/273 (49%)
Query: 8 PEDTNQKPYAASIKDI-TQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHR 66
PED QK Y A IKDI +Q +DG + + +WFY E+ + K G W + + RE+F+SFH
Sbjct: 94 PEDNKQKEYIAIIKDIYSQEKDGLVKMEVQWFYRREDIEEKHFGKWKTENPREIFFSFHC 153
Query: 67 DEIPVESVMHKCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSMR 126
DE+ ESV +KC+V+FVP K +PN H G + + +
Sbjct: 154 DEVFAESVKYKCLVYFVPDDKQIPNRIHHSGFIVQMVYDNVRKKVRKFSHEGFEEEQKFE 213
Query: 127 LISLDQKTRVRFGDLPDIEPQETAAQEQEDQL--KAKRMLWKKNISPLDVSREEGCMTRF 184
+ L KT R G+L D+E +T + ++ K +RM + +P+ E
Sbjct: 214 IDMLVAKTVSRIGNLVDVEKVQTTTIPRRKRIVRKCERM----SSNPISEKLES---LPS 266
Query: 185 KALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQKRNQKLR 244
AL R+ + LE +L+ + D + V ALE+A +D+ + D K N KL
Sbjct: 267 SALDRDKTLLELLEVVLKNMCCESTGTSRKDV-VQMVLALEEALYDSFADDVPKYNYKLE 325
Query: 245 QLLFNLKSTALLALRFLKGKLEPSKILDMSPNE 277
L+ LK++ +LA R L G+L+P + + M+ E
Sbjct: 326 LLVERLKNSRVLATRLLNGELKPEQAIKMADFE 358
>TAIR|locus:2097915 [details] [associations]
symbol:SUO "'shuttle' in chinese" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0035278 "negative regulation of translation
involved in gene silencing by miRNA" evidence=IDA]
InterPro:IPR001025 InterPro:IPR003617 InterPro:IPR017923
Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038 PROSITE:PS51319
SMART:SM00439 SMART:SM00509 GO:GO:0005634 EMBL:CP002686
GO:GO:0003677 GO:GO:0006351 GO:GO:0000932 GO:GO:0035278
Gene3D:1.20.930.10 SUPFAM:SSF47676 IPI:IPI00524563
RefSeq:NP_190388.2 RefSeq:NP_850669.2 UniGene:At.19774 PRIDE:F4JCS8
EnsemblPlants:AT3G48050.1 EnsemblPlants:AT3G48050.2 GeneID:823960
KEGG:ath:AT3G48050 OMA:DVNTESW ArrayExpress:F4JCS8 Uniprot:F4JCS8
Length = 1613
Score = 138 (53.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P+D P+ I+ I + + + W Y P E + G G L + ELFYSFH D
Sbjct: 62 PQDC--PPFIGIIRLIIAEEEDKLKLGVNWLYRPTEL-KLGKGILLEAEPNELFYSFHED 118
Query: 68 EIPVESVMHKCVVHFVPIHKHLPN 91
IP S++H C V F+P LP+
Sbjct: 119 NIPAASLLHPCKVAFLPRGVELPS 142
Score = 54 (24.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 27/119 (22%), Positives = 53/119 (44%)
Query: 95 HPGLSFKRFMTLWTGNSGSLLIKTMKIISSMRLISLDQKTRVRFGDLPDIEPQETAAQEQ 154
H S KR + +SGS ++T + S ++ +K G L D E E Q
Sbjct: 233 HGSESVKRERSSRVDDSGSGPLRTESGLKS-EILKFTEK-----GGLVDSEGVEKLVQLM 286
Query: 155 EDQLKAKR--MLWKKNISPLDVSREE-GCMTRFKALTRETYRDKWLERLLQGLQHNGNS 210
+ K+ ++ + ++ + + ++ C++RF L D+WL+ + +G +G S
Sbjct: 287 LPERNEKKIDLVGRAILAGVVAATDKFDCLSRFVQLRGLPVFDEWLQEVHKGKVGDGGS 345
>TAIR|locus:2097925 [details] [associations]
symbol:AT3G48060 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001025 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038
PROSITE:PS51319 SMART:SM00439 SMART:SM00509 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351
EMBL:AL049658 Gene3D:1.20.930.10 SUPFAM:SSF47676 UniGene:At.19774
IPI:IPI00534352 PIR:T06677 RefSeq:NP_190389.1 UniGene:At.48751
ProteinModelPortal:Q9SU69 SMR:Q9SU69 STRING:Q9SU69 PaxDb:Q9SU69
PRIDE:Q9SU69 EnsemblPlants:AT3G48060.1 GeneID:823961
KEGG:ath:AT3G48060 TAIR:At3g48060 eggNOG:NOG298939
HOGENOM:HOG000083288 InParanoid:Q9SU69 OMA:TERVECL PhylomeDB:Q9SU69
ProtClustDB:CLSN2684022 Genevestigator:Q9SU69 Uniprot:Q9SU69
Length = 1611
Score = 138 (53.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P+D P+ I+ I + + + W Y P E + G G L + ELFYSFH D
Sbjct: 62 PQDC--PPFIGIIRLIIAEEEDKLKLGVNWLYRPTEL-KLGKGILLEAEPNELFYSFHED 118
Query: 68 EIPVESVMHKCVVHFVPIHKHLPN 91
IP S++H C V F+P LP+
Sbjct: 119 NIPAASLLHPCKVAFLPRGVELPS 142
Score = 52 (23.4 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 95 HPGLSFKRFMTLWTGNSGSLLIKTMKIISSMRLISLDQKTRVRFGDLPDIEPQETAAQEQ 154
H S KR + +SGS ++T ++S ++ +K G L D E E Q
Sbjct: 233 HGSESVKRERSSRVDDSGSGPLRTESGLTS-EILKFTEK-----GGLVDSEGVEKLVQLM 286
Query: 155 EDQLKAKRM-LWKKNISP--LDVSREEGCMTRFKALTRETYRDKWLERLLQGLQHNGNS 210
+ K++ L + I + + C++RF L D+WL+ + +G +G S
Sbjct: 287 LPERNEKKIDLVGRAILAGFVAATNRFDCLSRFVQLRGLPVFDEWLQEVHKGKVGDGGS 345
>TAIR|locus:2137256 [details] [associations]
symbol:AT4G04260 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002687 GO:GO:0003677 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
IPI:IPI00527780 RefSeq:NP_192335.2 UniGene:At.54133
ProteinModelPortal:F4JGB7 SMR:F4JGB7 EnsemblPlants:AT4G04260.1
GeneID:825742 KEGG:ath:AT4G04260 Uniprot:F4JGB7
Length = 193
Score = 123 (48.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P D + PY A ++ I ++ V RW+Y PEE+ GG L G +ELF S H D
Sbjct: 3 PSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESH--GGRRQLHG-AKELFLSDHFD 59
Query: 68 EIPVESVMHKCVVHFVPIHKHLPN 91
++ KC+VH + L N
Sbjct: 60 VQSAHTIEGKCIVHTFKNYTRLEN 83
>TAIR|locus:2120693 [details] [associations]
symbol:EBS "EARLY BOLTING IN SHORT DAYS" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009845 "seed germination" evidence=IMP]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR001025 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01426 PROSITE:PS50016
PROSITE:PS51038 SMART:SM00249 SMART:SM00439 EMBL:CP002687
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0009845
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0009911 InterPro:IPR019786 PROSITE:PS01359
IPI:IPI00541104 RefSeq:NP_193945.2 UniGene:At.49737
ProteinModelPortal:F4JL28 SMR:F4JL28 PRIDE:F4JL28
EnsemblPlants:AT4G22140.1 GeneID:828303 KEGG:ath:AT4G22140
OMA:NQPYVAR Uniprot:F4JL28
Length = 234
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P D + PY A ++ I ++ V RW+Y PEE+ GG G +ELF S H D
Sbjct: 41 PSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEES--LGGRRQFHG-AKELFLSDHFD 97
Query: 68 EIPVESVMHKCVVHFVPIHKHLPN 91
++ KC+VH + L N
Sbjct: 98 VQSAHTIEGKCIVHTFKNYTRLEN 121
>UNIPROTKB|E1BNH8 [details] [associations]
symbol:E1BNH8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0008285 GO:GO:0007507
GO:GO:0000776 GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001890
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 OMA:WLKVGDC GeneTree:ENSGT00390000003017
EMBL:DAAA02054367 IPI:IPI00699896 Ensembl:ENSBTAT00000019672
Uniprot:E1BNH8
Length = 1664
Score = 129 (50.5 bits), Expect = 0.00017, P = 0.00017
Identities = 50/200 (25%), Positives = 89/200 (44%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 943 PSEVNLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 999
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM + SS+
Sbjct: 1000 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPV-SSV 1058
Query: 126 RLISLDQK---TRVR--FGDLPDIEPQETAAQEQEDQLKAKRMLWK-KNISPLDVSR-EE 178
R + D RV F + + ++ ++ + + L K K P+++S E
Sbjct: 1059 RFVPRDVPLPVVRVASVFANADKADDEKNTDNSEDSRTEDSCNLEKEKEDVPVEMSNGEP 1118
Query: 179 GCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1119 GCHY-FEQLR---YNDMWLK 1134
>UNIPROTKB|E7EVG2 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:AC104446
HGNC:HGNC:30064 ChiTaRS:PBRM1 EMBL:AC112215 IPI:IPI00916875
ProteinModelPortal:E7EVG2 SMR:E7EVG2 Ensembl:ENST00000423351
UCSC:uc003dez.1 ArrayExpress:E7EVG2 Bgee:E7EVG2 Uniprot:E7EVG2
Length = 1461
Score = 125 (49.1 bits), Expect = 0.00041, P = 0.00041
Identities = 51/200 (25%), Positives = 89/200 (44%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 967 PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1023
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM I SS+
Sbjct: 1024 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI-SSV 1082
Query: 126 RLISLDQK---TRVR--FGDLPDIEPQETAAQEQEDQLKAKRMLWK-KNISPLDVSR-EE 178
R + D RV F + + ++ ++ + + L K K P+++S E
Sbjct: 1083 RFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDNFNLEKEKEDVPVEMSNGEP 1142
Query: 179 GCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1143 GCHY-FEQLH---YNDMWLK 1158
>MGI|MGI:1923998 [details] [associations]
symbol:Pbrm1 "polybromo 1" species:10090 "Mus musculus"
[GO:0000776 "kinetochore" evidence=IDA] [GO:0001890 "placenta
development" evidence=IMP] [GO:0001974 "blood vessel remodeling"
evidence=TAS] [GO:0003007 "heart morphogenesis" evidence=TAS]
[GO:0003349 "epicardium-derived cardiac endothelial cell
differentiation" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IC] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007507 "heart development"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0060948 "cardiac vascular smooth
muscle cell development" evidence=TAS] [GO:0060979 "vasculogenesis
involved in coronary vascular morphogenesis" evidence=TAS]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 MGI:MGI:1923998
Pfam:PF00505 GO:GO:0005634 GO:GO:0045893 GO:GO:0008285
GO:GO:0000776 GO:GO:0003677 GO:GO:0003007 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001974 GO:GO:0001890
GO:GO:0060979 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
eggNOG:COG5076 InterPro:IPR018359 GO:GO:0060948 EMBL:AC154446
HOVERGEN:HBG079860 OrthoDB:EOG41NTK5 ChiTaRS:PBRM1 EMBL:AC154727
EMBL:BC023452 EMBL:BC029037 EMBL:BC055456 EMBL:BC055708
EMBL:BF451491 EMBL:CN530699 EMBL:AK009582 EMBL:AK030781
EMBL:AK030252 EMBL:AK166588 IPI:IPI00856358 IPI:IPI01023209
UniGene:Mm.27913 PDB:2YQD PDBsum:2YQD ProteinModelPortal:Q8BSQ9
SMR:Q8BSQ9 DIP:DIP-48885N IntAct:Q8BSQ9 STRING:Q8BSQ9
PhosphoSite:Q8BSQ9 PaxDb:Q8BSQ9 PRIDE:Q8BSQ9
Ensembl:ENSMUST00000112094 Ensembl:ENSMUST00000112095
GeneTree:ENSGT00390000003017 EvolutionaryTrace:Q8BSQ9 Bgee:Q8BSQ9
Genevestigator:Q8BSQ9 GO:GO:0003349 Uniprot:Q8BSQ9
Length = 1634
Score = 125 (49.1 bits), Expect = 0.00046, P = 0.00046
Identities = 51/200 (25%), Positives = 89/200 (44%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 968 PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1024
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM I SS+
Sbjct: 1025 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI-SSV 1083
Query: 126 RLISLDQK---TRVR--FGDLPDIEPQETAAQEQEDQLKAKRMLWK-KNISPLDVSR-EE 178
R + D RV F + + ++ +++ + L K K P+++S E
Sbjct: 1084 RFVPRDVPLPVVRVASVFANADKGDDEKNTDNSDDNRAEDNFNLEKEKEDVPVEMSNGEP 1143
Query: 179 GCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1144 GCHY-FEQLR---YNDMWLK 1159
>UNIPROTKB|Q86U86 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=NAS] [GO:0007067 "mitosis"
evidence=TAS] [GO:0000228 "nuclear chromosome" evidence=NAS]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0008285 GO:GO:0007507 GO:GO:0000776 GO:GO:0007067
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001890 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359 GO:GO:0000228
MIM:144700 CTD:55193 HOVERGEN:HBG079860 KO:K11757 EMBL:AF197569
EMBL:AF225870 EMBL:AF225871 EMBL:AF225872 EMBL:AF177387
EMBL:AY281068 EMBL:BC115009 EMBL:BC115010 EMBL:BC115011
EMBL:BC129934 EMBL:BC129935 EMBL:AK056541 IPI:IPI00023097
IPI:IPI00301041 IPI:IPI00334894 IPI:IPI00384176 IPI:IPI00398781
IPI:IPI00640304 IPI:IPI00873041 IPI:IPI00909142 IPI:IPI00910435
RefSeq:NP_060783.3 UniGene:Hs.189920 UniGene:Hs.476320 PDB:2KTB
PDB:3G0J PDB:3HMF PDB:3IU5 PDB:3IU6 PDB:3K2J PDB:3LJW PDB:3MB4
PDB:3TLP PDBsum:2KTB PDBsum:3G0J PDBsum:3HMF PDBsum:3IU5
PDBsum:3IU6 PDBsum:3K2J PDBsum:3LJW PDBsum:3MB4 PDBsum:3TLP
ProteinModelPortal:Q86U86 SMR:Q86U86 DIP:DIP-33045N IntAct:Q86U86
MINT:MINT-1195749 STRING:Q86U86 PhosphoSite:Q86U86 DMDM:73921624
PaxDb:Q86U86 PRIDE:Q86U86 Ensembl:ENST00000296302
Ensembl:ENST00000337303 Ensembl:ENST00000356770
Ensembl:ENST00000394830 Ensembl:ENST00000409057
Ensembl:ENST00000409114 Ensembl:ENST00000409767
Ensembl:ENST00000410007 Ensembl:ENST00000412587 GeneID:55193
KEGG:hsa:55193 UCSC:uc003deq.2 UCSC:uc003der.2 UCSC:uc003des.2
UCSC:uc003det.2 UCSC:uc003deu.2 UCSC:uc003dew.2 UCSC:uc003dey.2
UCSC:uc010hmk.1 GeneCards:GC03M052579 H-InvDB:HIX0003364
HGNC:HGNC:30064 HPA:HPA015629 MIM:606083 neXtProt:NX_Q86U86
PharmGKB:PA162398846 InParanoid:Q86U86 OMA:WLKVGDC PhylomeDB:Q86U86
ChEMBL:CHEMBL1795184 ChiTaRS:PBRM1 EvolutionaryTrace:Q86U86
GenomeRNAi:55193 NextBio:59051 ArrayExpress:Q86U86 Bgee:Q86U86
Genevestigator:Q86U86 GermOnline:ENSG00000163939 Uniprot:Q86U86
Length = 1689
Score = 125 (49.1 bits), Expect = 0.00048, P = 0.00048
Identities = 51/200 (25%), Positives = 89/200 (44%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 968 PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1024
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM I SS+
Sbjct: 1025 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI-SSV 1083
Query: 126 RLISLDQK---TRVR--FGDLPDIEPQETAAQEQEDQLKAKRMLWK-KNISPLDVSR-EE 178
R + D RV F + + ++ ++ + + L K K P+++S E
Sbjct: 1084 RFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDNFNLEKEKEDVPVEMSNGEP 1143
Query: 179 GCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1144 GCHY-FEQLH---YNDMWLK 1159
>UNIPROTKB|F1NLL8 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0008285 GO:GO:0000776
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 IPI:IPI00571677 OMA:WLKVGDC
GeneTree:ENSGT00390000003017 EMBL:AADN02052994
Ensembl:ENSGALT00000002415 Uniprot:F1NLL8
Length = 1630
Score = 122 (48.0 bits), Expect = 0.00097, P = 0.00097
Identities = 51/201 (25%), Positives = 88/201 (43%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 966 PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1022
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM + SS+
Sbjct: 1023 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPV-SSV 1081
Query: 126 RLISLDQKTRV-RFGDL---PDIEPQETAAQEQEDQLKAKRMLW---KKNISPLDVSR-E 177
R + D V R + D +E + +D + +L K P+++S E
Sbjct: 1082 RFVPRDVPLPVVRVASVFANTDKAEEEKHSDTLDDSKVGESILHLEKDKEDVPVEMSNGE 1141
Query: 178 EGCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1142 PGCHY-FEQLC---YNDMWLK 1158
>UNIPROTKB|Q90941 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359 EMBL:X90849
IPI:IPI00571677 PIR:JC5056 RefSeq:NP_990496.1 UniGene:Gga.3045
PDB:1W4S PDBsum:1W4S ProteinModelPortal:Q90941 SMR:Q90941
STRING:Q90941 PRIDE:Q90941 GeneID:396074 KEGG:gga:396074 CTD:55193
HOGENOM:HOG000045795 HOVERGEN:HBG079860 InParanoid:Q90941 KO:K11757
OrthoDB:EOG41NTK5 EvolutionaryTrace:Q90941 NextBio:20816133
Uniprot:Q90941
Length = 1633
Score = 122 (48.0 bits), Expect = 0.00097, P = 0.00097
Identities = 51/201 (25%), Positives = 88/201 (43%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + N +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 966 PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1022
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM + SS+
Sbjct: 1023 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPV-SSV 1081
Query: 126 RLISLDQKTRV-RFGDL---PDIEPQETAAQEQEDQLKAKRMLW---KKNISPLDVSR-E 177
R + D V R + D +E + +D + +L K P+++S E
Sbjct: 1082 RFVPRDVPLPVVRVASVFANTDKAEEEKHSDTLDDSKVGESILHLEKDKEDVPVEMSNGE 1141
Query: 178 EGCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1142 PGCHY-FEQLC---YNDMWLK 1158
>UNIPROTKB|E2RRR3 [details] [associations]
symbol:PBRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00390000003017 EMBL:AAEX03012193
EMBL:AAEX03012194 EMBL:AAEX03012195 Ensembl:ENSCAFT00000014499
Uniprot:E2RRR3
Length = 1635
Score = 122 (48.0 bits), Expect = 0.00097, P = 0.00097
Identities = 50/200 (25%), Positives = 89/200 (44%)
Query: 8 PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
P + + +P+ I+ + + G + G WFY P E +L +E+F S + +
Sbjct: 969 PAEASLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 1025
Query: 68 EIPVESVMHKCVVHFVPIH-KHLP-NHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSM 125
++PV ++ KCVV FV + K P N + + + T + + + TM I SS+
Sbjct: 1026 KVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI-SSV 1084
Query: 126 RLISLDQK---TRVR--FGDLPDIEPQETAAQEQEDQLKAKRMLWK-KNISPLDVSR-EE 178
R + D RV F + + ++ ++ + + L K K P+++S E
Sbjct: 1085 RFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRTEDSYNLEKEKEDVPVEMSNGEP 1144
Query: 179 GCMTRFKALTRETYRDKWLE 198
GC F+ L Y D WL+
Sbjct: 1145 GCHY-FEQLR---YNDMWLK 1160
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 434 420 0.00083 118 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 621 (66 KB)
Total size of DFA: 271 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.51u 0.18s 35.69t Elapsed: 00:00:02
Total cpu time: 35.51u 0.18s 35.69t Elapsed: 00:00:02
Start: Mon May 20 19:59:56 2013 End: Mon May 20 19:59:58 2013