BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035627
         (434 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W4S|A Chain A, Crystal Structure Of The Proximal Bah Domain Of Polybromo
          Length = 174

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 8   PEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRD 67
           P + N +P+   I+ + +   G   + G WFY P E        +L    +E+F S + +
Sbjct: 37  PAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE---KEVFKSDYYN 93

Query: 68  EIPVESVMHKCVVHFV 83
           ++PV  ++ KCVV FV
Sbjct: 94  KVPVSKILGKCVVMFV 109


>pdb|2DME|A Chain A, Solution Structure Of The Tfiis Domain Ii Of Human Phd
           Finger Protein 3
          Length = 120

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 188 TRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQKRNQKLRQLL 247
            R + +D  ++RL      + N  +  + A    T +EK           K   K R L+
Sbjct: 16  VRHSLKDILMKRLT-----DSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLM 70

Query: 248 FNLKS--TALLALRFLKGKLEPSKILDMSPNEL 278
           FNLK     +L  + LKG++ P  ++ MSP EL
Sbjct: 71  FNLKDPKNNILFKKVLKGEVTPDHLIRMSPEEL 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,895,559
Number of Sequences: 62578
Number of extensions: 458296
Number of successful extensions: 970
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 7
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)