Query 035627
Match_columns 434
No_of_seqs 296 out of 624
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3po3_S Transcription elongatio 100.0 7.8E-46 2.7E-50 343.4 12.5 165 176-346 1-178 (178)
2 1pqv_S STP-alpha, transcriptio 100.0 1E-44 3.5E-49 361.2 15.3 223 118-346 52-309 (309)
3 2lw4_A Transcription elongatio 99.9 1.9E-28 6.5E-33 211.8 3.3 101 186-286 6-108 (113)
4 3ndq_A Transcription elongatio 99.9 3.5E-27 1.2E-31 202.4 4.3 96 186-281 10-107 (108)
5 2dme_A PHD finger protein 3; P 99.9 2.4E-25 8.3E-30 194.2 5.0 100 188-287 8-112 (120)
6 1w4s_A Polybromo, polybromo 1 99.9 1.5E-23 5.2E-28 192.6 7.0 99 3-104 32-132 (174)
7 3av4_A DNA (cytosine-5)-methyl 99.7 6.8E-18 2.3E-22 193.9 9.8 104 3-111 475-595 (1330)
8 3swr_A DNA (cytosine-5)-methyl 99.7 2E-17 6.8E-22 186.0 11.0 104 3-111 164-283 (1002)
9 4dov_A ORC1, origin recognitio 99.6 3.2E-15 1.1E-19 136.0 11.5 96 3-102 44-150 (163)
10 1tfi_A Transcriptional elongat 99.5 2.1E-15 7.2E-20 112.6 3.5 47 297-346 4-50 (50)
11 4ft4_B DNA (cytosine-5)-methyl 99.4 5.6E-14 1.9E-18 153.8 6.4 101 3-104 63-170 (784)
12 3swr_A DNA (cytosine-5)-methyl 99.4 1.6E-13 5.6E-18 154.4 9.1 92 12-104 390-491 (1002)
13 3av4_A DNA (cytosine-5)-methyl 99.4 3.2E-13 1.1E-17 155.4 7.2 92 12-104 702-802 (1330)
14 1qyp_A RNA polymerase II; tran 99.2 2.6E-12 8.9E-17 97.7 1.5 44 299-345 12-55 (57)
15 3h0g_I DNA-directed RNA polyme 99.1 3.3E-11 1.1E-15 103.8 3.6 43 299-344 69-111 (113)
16 1twf_I B12.6, DNA-directed RNA 99.1 4.9E-11 1.7E-15 104.0 3.5 45 298-345 68-112 (122)
17 3qt1_I DNA-directed RNA polyme 99.0 5.5E-11 1.9E-15 105.3 0.0 43 299-344 89-131 (133)
18 2fl7_A Regulatory protein SIR3 98.4 1.7E-07 5.9E-12 89.7 4.6 101 3-104 58-180 (232)
19 1m4z_A Origin recognition comp 98.4 1.4E-07 4.9E-12 90.6 3.1 101 3-104 58-180 (238)
20 2kwq_A Protein MCM10 homolog; 83.2 0.31 1.1E-05 40.3 0.8 26 303-342 49-74 (92)
21 4ayb_P DNA-directed RNA polyme 69.9 1.8 6E-05 31.7 1.5 32 301-343 2-33 (48)
22 2e2z_A TIM15; protein import, 69.7 0.66 2.3E-05 39.0 -0.9 35 302-342 13-47 (100)
23 2vut_I AREA, nitrogen regulato 68.4 0.99 3.4E-05 32.2 -0.1 31 304-344 3-33 (43)
24 1gnf_A Transcription factor GA 65.8 1.5 5.2E-05 31.7 0.4 32 303-344 5-36 (46)
25 2hgo_A CASSIICOLIN; toxin, dis 64.0 1.9 6.4E-05 27.3 0.5 11 337-347 16-26 (27)
26 3h0g_L DNA-directed RNA polyme 56.3 4.6 0.00016 31.1 1.7 28 302-343 21-48 (63)
27 1k81_A EIF-2-beta, probable tr 53.4 6.4 0.00022 26.8 1.8 32 304-345 2-33 (36)
28 3dfx_A Trans-acting T-cell-spe 51.7 3.2 0.00011 31.9 0.1 32 303-344 8-39 (63)
29 2kae_A GATA-type transcription 48.6 4.5 0.00015 31.8 0.5 34 302-344 8-41 (71)
30 1wjt_A Transcription elongatio 46.8 5.3 0.00018 33.4 0.7 31 118-148 61-92 (103)
31 2akl_A PHNA-like protein PA012 43.1 8.6 0.00029 33.8 1.5 34 297-344 21-55 (138)
32 1kdx_A CBP; complex (transcrip 43.1 48 0.0017 26.6 5.8 60 190-250 12-75 (81)
33 4gat_A Nitrogen regulatory pro 41.2 4.2 0.00014 31.5 -0.7 37 302-348 9-46 (66)
34 3iz6_X 40S ribosomal protein S 40.5 8 0.00027 31.6 0.8 29 302-342 36-64 (86)
35 1i7f_A Heat shock protein 33; 40.1 5.1 0.00018 39.2 -0.5 22 333-354 260-281 (292)
36 2xzm_6 RPS27E; ribosome, trans 39.2 8.3 0.00028 31.1 0.7 28 303-342 33-60 (81)
37 1qxf_A GR2, 30S ribosomal prot 38.4 10 0.00036 29.4 1.1 29 302-342 7-35 (66)
38 1x0t_A Ribonuclease P protein 37.7 16 0.00056 31.0 2.4 36 303-345 66-106 (120)
39 1ltl_A DNA replication initiat 36.5 16 0.00055 35.0 2.4 37 302-348 134-172 (279)
40 2k3r_A Ribonuclease P protein 35.3 17 0.00059 31.1 2.1 36 303-345 61-101 (123)
41 1twf_L ABC10-alpha, DNA-direct 33.9 18 0.00061 28.2 1.8 28 302-343 28-55 (70)
42 3j20_W 30S ribosomal protein S 30.9 17 0.00058 28.0 1.2 27 303-341 16-42 (63)
43 2vpb_A Hpygo1, pygopus homolog 27.5 29 0.00099 26.3 2.0 28 302-345 8-36 (65)
44 3u5c_b RP61, YS20, 40S ribosom 27.4 21 0.00071 28.9 1.2 28 302-341 34-61 (82)
45 3j21_i 50S ribosomal protein L 24.0 42 0.0014 27.1 2.4 38 293-343 26-63 (83)
46 1pft_A TFIIB, PFTFIIBN; N-term 23.4 47 0.0016 23.4 2.4 30 303-344 6-35 (50)
47 1vq8_Z 50S ribosomal protein L 23.0 37 0.0013 27.2 1.9 37 293-342 18-54 (83)
48 2d74_B Translation initiation 22.9 37 0.0013 30.1 2.1 31 304-344 106-136 (148)
49 3jyw_9 60S ribosomal protein L 21.5 48 0.0016 26.1 2.2 38 293-343 17-54 (72)
50 1ffk_W Ribosomal protein L37AE 20.0 71 0.0024 25.1 2.9 38 293-343 18-55 (73)
No 1
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=7.8e-46 Score=343.39 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=136.3
Q ss_pred CcC-CcccccccccChhHHHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHhccC-ChH-HHHHHHHHHHHhcc-
Q 035627 176 REE-GCMTRFKALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSS-DFQ-KRNQKLRQLLFNLK- 251 (434)
Q Consensus 176 R~~-~d~v~~~~~Tgd~~RDkcielLy~aL~~~~~s~~~~~~v~~~A~~IE~a~~~~~~~-~~~-~Yk~K~Rsl~~NLK- 251 (434)
|++ +|||++ .+|||++||+|+++||+||+.+. .+.+..++.+|.+||+++|+.+++ ++. +|++|+|||+||||
T Consensus 1 r~~~~d~v~~-~~~~d~vRdk~~~lL~~aL~~~~--~~~~~~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd 77 (178)
T 3po3_S 1 RNSKNDGVDT-AIYHHKLRDQVLKALYDVLAKES--EHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVIS 77 (178)
T ss_dssp ---------------CHHHHHHHHHHHHHTTSSS--SCSTTHHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHS
T ss_pred CCccCCCcCc-CcCCChHHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCC
Confidence 455 899999 68999999999999999999984 345778999999999999999986 344 89999999999998
Q ss_pred -cChhhhhhhccCCCCccccccCChhhhcchhcHHHHhhhhhHHHhhccc--------CccccCCCCCccccceeeeccc
Q 035627 252 -STALLALRFLKGKLEPSKILDMSPNELNEGLTAEETAKEESDESEQMQM--------TDARCSRCNECKVGLRDIIQAG 322 (434)
Q Consensus 252 -~Np~Lr~rvl~G~I~p~~lv~Ms~eELas~~~~ee~~k~e~~~i~~~q~--------~~~~CgkCk~~k~ty~q~~qtr 322 (434)
+||+||++|++|+|+|+.|+.|+++||||+++++++++...+.++++|+ +.++|++||++++.|+|+ |+|
T Consensus 78 ~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~e~l~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~-Q~r 156 (178)
T 3po3_S 78 KNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQL-QTR 156 (178)
T ss_dssp SSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHHHHHHHTBCCCCCCCCBSSSCCSSSCCSCEECCCC-CCS
T ss_pred CCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHHHHHHHhhhccccCCCcCCcCCCCCCCCceEEEEe-ecc
Confidence 6999999999999999999999999999998887776666667766543 347999999999999995 999
Q ss_pred CCCCcceeeeeeeccccCcccccC
Q 035627 323 LGDRYQQLSKALGVYCHGHSWYAS 346 (434)
Q Consensus 323 saDe~mtt~~FvtC~~CGnrWk~s 346 (434)
||||||| +|++|.+|||+|+||
T Consensus 157 saDE~mt--~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 157 SAAAPLT--TFCTCEACGNRWKFS 178 (178)
T ss_dssp CTTSCCC--CCEEETTTCCEECCC
T ss_pred cCCCCCc--EEEEcCCCCCeeccC
Confidence 9999999 588999999999997
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=1e-44 Score=361.20 Aligned_cols=223 Identities=15% Similarity=0.182 Sum_probs=176.2
Q ss_pred hhccccchhHHHHhHHHHhHhCCCCCCCcccchh------------hhhhhhHHhh--------h--hhccccCCCCCCC
Q 035627 118 TMKIISSMRLISLDQKTRVRFGDLPDIEPQETAA------------QEQEDQLKAK--------R--MLWKKNISPLDVS 175 (434)
Q Consensus 118 ~~~~~~~~EId~Lv~Kti~kw~d~vd~EK~~k~~------------~~~~~~~~~~--------~--~~~k~~~~~~~~~ 175 (434)
-++.|.+.+|..|++.+|.+|+.+++.++..+.. ..+..+.... . +.......+...+
T Consensus 52 ~lrkh~~~~v~~~Ak~Li~~WK~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
T 1pqv_S 52 KFKKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKP 131 (309)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhccCCcccccccccccccccCCCCCCCCcCCCCCCcccccccccCCCCCCCCC
Confidence 4566899999999999999999999887664321 0000000000 0 0000011233445
Q ss_pred CcC-CcccccccccChhHHHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHhccCChHH--HHHHHHHHHHhcc-
Q 035627 176 REE-GCMTRFKALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQK--RNQKLRQLLFNLK- 251 (434)
Q Consensus 176 R~~-~d~v~~~~~Tgd~~RDkcielLy~aL~~~~~s~~~~~~v~~~A~~IE~a~~~~~~~~~~~--Yk~K~Rsl~~NLK- 251 (434)
|++ .+++.. ..|||.+||+|+++||+||..+.+ +.+.++..+|.+||.+||+.|++++.+ |++|+|+|+||||
T Consensus 132 ~~~~~~~~~~-~~~~d~~R~k~r~~L~~aL~~~~~--~~~~~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd 208 (309)
T 1pqv_S 132 RNSKNDGVDT-AIYHHKLRDQVLKALYDVLAKESE--HPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVIS 208 (309)
T ss_pred CCCCCCCCCc-CcCChHHHHHHHHHHHHHHhcCCC--ccchhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCc
Confidence 665 567765 579999999999999999998743 335588899999999999999877776 9999999999999
Q ss_pred -cChhhhhhhccCCCCccccccCChhhhcchhcHHHHhhhhhHHHhhccc--------CccccCCCCCccccceeeeccc
Q 035627 252 -STALLALRFLKGKLEPSKILDMSPNELNEGLTAEETAKEESDESEQMQM--------TDARCSRCNECKVGLRDIIQAG 322 (434)
Q Consensus 252 -~Np~Lr~rvl~G~I~p~~lv~Ms~eELas~~~~ee~~k~e~~~i~~~q~--------~~~~CgkCk~~k~ty~q~~qtr 322 (434)
+||.||++||+|+|+|++|+.|+++|||++++++++++...+.++.+++ +.++|++||+++|.|+|+ |+|
T Consensus 209 ~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~e~l~~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~-Q~r 287 (309)
T 1pqv_S 209 KNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQL-QTR 287 (309)
T ss_pred CCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHHHHHHHhhhccccccCcccccCCCCCCCeeEEEEe-ecc
Confidence 6999999999999999999999999999998887776666666665443 458999999999999995 999
Q ss_pred CCCCcceeeeeeeccccCcccccC
Q 035627 323 LGDRYQQLSKALGVYCHGHSWYAS 346 (434)
Q Consensus 323 saDe~mtt~~FvtC~~CGnrWk~s 346 (434)
||||||| +|++|.+|||||+||
T Consensus 288 saDe~~t--~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 288 SADEPLT--TFCTCEACGNRWKFS 309 (309)
T ss_pred cCCCCCc--EEEEeCCCCCceecC
Confidence 9999999 588999999999998
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.94 E-value=1.9e-28 Score=211.79 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=88.9
Q ss_pred cccChhHHHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcc--cChhhhhhhccC
Q 035627 186 ALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQKRNQKLRQLLFNLK--STALLALRFLKG 263 (434)
Q Consensus 186 ~~Tgd~~RDkcielLy~aL~~~~~s~~~~~~v~~~A~~IE~a~~~~~~~~~~~Yk~K~Rsl~~NLK--~Np~Lr~rvl~G 263 (434)
.+|||++||+|+++||+||+.+.+......++..+|.+||.++|..|++++.+|++|+|||+|||| +||+||++||+|
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~~~~~~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~Lr~~vl~G 85 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCG 85 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSSTHHHHHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 469999999999999999998743222234677899999999999999888899999999999998 599999999999
Q ss_pred CCCccccccCChhhhcchhcHHH
Q 035627 264 KLEPSKILDMSPNELNEGLTAEE 286 (434)
Q Consensus 264 ~I~p~~lv~Ms~eELas~~~~ee 286 (434)
+|+|++|+.||++||||+++++.
T Consensus 86 ~i~p~~l~~Ms~eEmAs~elk~~ 108 (113)
T 2lw4_A 86 AITPQQIAVMTSEEMASDELKEI 108 (113)
T ss_dssp SSCHHHHHHSCHHHHHCTTTTTC
T ss_pred CCCHHHHhcCCHHHcCCHHHHHH
Confidence 99999999999999999766543
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.93 E-value=3.5e-27 Score=202.43 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=83.1
Q ss_pred cccChhHHHHHHHHHHhhhccCCCCCCChhhHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcc--cChhhhhhhccC
Q 035627 186 ALTRETYRDKWLERLLQGLQHNGNSFLWPDTAIAAVTALEKASHDALSSDFQKRNQKLRQLLFNLK--STALLALRFLKG 263 (434)
Q Consensus 186 ~~Tgd~~RDkcielLy~aL~~~~~s~~~~~~v~~~A~~IE~a~~~~~~~~~~~Yk~K~Rsl~~NLK--~Np~Lr~rvl~G 263 (434)
.+|||++||+|+++||+||+.+++......++..+|.+||+++|+.|++++.+|++|+|||+|||| +||+||++|++|
T Consensus 10 ~~t~d~vR~k~~~lL~~aL~~~~d~~~~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G 89 (108)
T 3ndq_A 10 PSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCG 89 (108)
T ss_dssp CCCCCHHHHHHHHHHHHHTTGGGHHHHHTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 469999999999999999999742211123678999999999999998888899999999999999 699999999999
Q ss_pred CCCccccccCChhhhcch
Q 035627 264 KLEPSKILDMSPNELNEG 281 (434)
Q Consensus 264 ~I~p~~lv~Ms~eELas~ 281 (434)
+|+|++|+.||++||||+
T Consensus 90 ~isp~~lv~Ms~eEmAS~ 107 (108)
T 3ndq_A 90 NIPPDLFARMTAEEMASD 107 (108)
T ss_dssp SSCHHHHHHCCTTTC---
T ss_pred CcCHHHHhCCCHHHccCC
Confidence 999999999999999994
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.4e-25 Score=194.23 Aligned_cols=100 Identities=26% Similarity=0.310 Sum_probs=88.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCC---CCChhhHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcc--cChhhhhhhcc
Q 035627 188 TRETYRDKWLERLLQGLQHNGNS---FLWPDTAIAAVTALEKASHDALSSDFQKRNQKLRQLLFNLK--STALLALRFLK 262 (434)
Q Consensus 188 Tgd~~RDkcielLy~aL~~~~~s---~~~~~~v~~~A~~IE~a~~~~~~~~~~~Yk~K~Rsl~~NLK--~Np~Lr~rvl~ 262 (434)
++|.+||+|+++|+++|...... ..+..++..+|.+||.++|+.|++++.+|++|+|||+|||| +||+||++||+
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~ 87 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLK 87 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 67999999999999999875221 12346788999999999999998888899999999999998 69999999999
Q ss_pred CCCCccccccCChhhhcchhcHHHH
Q 035627 263 GKLEPSKILDMSPNELNEGLTAEET 287 (434)
Q Consensus 263 G~I~p~~lv~Ms~eELas~~~~ee~ 287 (434)
|+|+|++|+.||++||||+++++++
T Consensus 88 G~i~p~~lv~Ms~eEmAS~elk~~r 112 (120)
T 2dme_A 88 GEVTPDHLIRMSPEELASKELAAWR 112 (120)
T ss_dssp TSSCTTHHHHSCTTTTTTCCSTTTC
T ss_pred CCCCHHHHhcCCHHHcCCHHHHHHH
Confidence 9999999999999999998776555
No 6
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.88 E-value=1.5e-23 Score=192.56 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=86.5
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecCCCceEEEEEEEeChhccCccCCCCCCCCCCCceeecCCcccccccceeceeEEEe
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMHKCVVHF 82 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~~g~~~v~v~WFYRPeEt~~~~~G~~~~~~~rELF~S~h~D~~pv~sI~gKC~V~~ 82 (434)
||||.+++.+.+||||+|++||++.+|.++|+|+|||||+||.. ..++. +.+||||+|+|.|++|+++|+|||.|++
T Consensus 32 ~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~-~~~~~--~~~~EvF~S~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 32 YVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFH-LATRK--FLEKEVFKSDYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp EEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCC-CTTCE--EETTEEEEEEEEEEEEGGGEEEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHccc-ccCCc--CCCCeeEEeCCcceecHHHeeeeEEEEE
Confidence 79999988778999999999999989999999999999999983 33332 3599999999999999999999999999
Q ss_pred cCccccCCCC--CCCCceEEccce
Q 035627 83 VPIHKHLPNH--KQHPGLSFKRFM 104 (434)
Q Consensus 83 ~~ey~~lp~~--~e~~~Fic~~~Y 104 (434)
+++|.+..+. ...+.|+|++.|
T Consensus 109 ~~~~~~~~p~~~~~~dvF~c~~~Y 132 (174)
T 1w4s_A 109 VKEYFKLCPENFRDEDVYVCESRY 132 (174)
T ss_dssp HHHHTTEEETTCCGGGEEEEEEEE
T ss_pred CchhhhcCcCCCCCCCEEEEeEEE
Confidence 9999887432 245789999999
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.72 E-value=6.8e-18 Score=193.91 Aligned_cols=104 Identities=18% Similarity=0.325 Sum_probs=86.0
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecCCCceEEEEEEEeChhccCccCCCCCCCCCCCceeecCCcccccccceeceeEEEe
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMHKCVVHF 82 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~~g~~~v~v~WFYRPeEt~~~~~G~~~~~~~rELF~S~h~D~~pv~sI~gKC~V~~ 82 (434)
||||.+++++.++|||+|++||++.+|.++|+|+|||||+||.. |+ .++++|||+|+|+|++|+++|.|||.|++
T Consensus 475 ~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvl---g~--~~~~rElFlS~~~d~~~l~~I~gKC~V~~ 549 (1330)
T 3av4_A 475 CVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVL---GA--TSDPLELFLVGECENMQLSYIHSKVKVIY 549 (1330)
T ss_dssp EEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTT---GG--GSCTTEEEEEEEEEEEEGGGEEEEECEEE
T ss_pred EEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHccc---cc--ccCCCeEEEecccccCcHHHhcceeEEEE
Confidence 79999988778899999999999999999999999999999983 54 37899999999999999999999999999
Q ss_pred cCc---cccC----CC-----CCCCCceEEccce-----eecccCC
Q 035627 83 VPI---HKHL----PN-----HKQHPGLSFKRFM-----TLWTGNS 111 (434)
Q Consensus 83 ~~e---y~~l----p~-----~~e~~~Fic~~~Y-----~l~~~~~ 111 (434)
+++ |.+. +. ..+...|+|++.| +++++..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~lp~ 595 (1330)
T 3av4_A 550 KAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESPPK 595 (1330)
T ss_dssp CCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECCCC
T ss_pred eccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCcCc
Confidence 877 4322 11 1345689999999 6777633
No 8
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.70 E-value=2e-17 Score=186.02 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=86.7
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecCCCceEEEEEEEeChhccCccCCCCCCCCCCCceeecCCcccccccceeceeEEEe
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMHKCVVHF 82 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~~g~~~v~v~WFYRPeEt~~~~~G~~~~~~~rELF~S~h~D~~pv~sI~gKC~V~~ 82 (434)
||||.+++++.+||||+|++||++.+|.++|+|+|||||+||.. |+. ++++|||+|+|+|++|+++|+|||+|++
T Consensus 164 ~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~l---g~~--~~~~ElFlsd~cd~~~l~~I~gkc~V~~ 238 (1002)
T 3swr_A 164 CVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL---GAT--SDPLELFLVDECEDMQLSYIHSKVKVIY 238 (1002)
T ss_dssp EEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTT---GGG--SCTTEEEEEEEEEEEEGGGEEEEECEEE
T ss_pred EEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhccc---ccC--CCCCceEeeccccCCcHHHhceeeEEEE
Confidence 89999988888999999999999988999999999999999983 543 7899999999999999999999999998
Q ss_pred cCc---c------cc-CCCC-CCCCceEEccce-----eecccCC
Q 035627 83 VPI---H------KH-LPNH-KQHPGLSFKRFM-----TLWTGNS 111 (434)
Q Consensus 83 ~~e---y------~~-lp~~-~e~~~Fic~~~Y-----~l~~~~~ 111 (434)
+.. | .. .+.. .+.+.|+|+..| .+.+++.
T Consensus 239 ~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~ 283 (1002)
T 3swr_A 239 KAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPK 283 (1002)
T ss_dssp CCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCCC
T ss_pred ccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCCh
Confidence 765 1 11 1111 135689999999 5666643
No 9
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.60 E-value=3.2e-15 Score=135.96 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=77.3
Q ss_pred EEEEecCCCCCCCeEEEEeEeeec---CCCceEEEEEEEeChhccCccCCCCCCCC----CCCceeecCCcc---ccccc
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQS---RDGSMMVTGRWFYHPEEADRKGGGNWLSG----DTRELFYSFHRD---EIPVE 72 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~---~~g~~~v~v~WFYRPeEt~~~~~G~~~~~----~~rELF~S~h~D---~~pv~ 72 (434)
||||.+++ +..||||+|++|+++ ..+...++|||||||+|+.. |++..+ +++|||.++|.| +++++
T Consensus 44 ~VLI~~~D-~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~---~k~~l~g~~~~~qEIF~~d~~~~d~~I~ae 119 (163)
T 4dov_A 44 FVLIQGED-NKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPV---SKRHLLGRSPPAQEIFWYDCSDWDNKINVE 119 (163)
T ss_dssp EEEECCSS-SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCT---TTGGGGCSCCCTTEEEEECCSCSCCEEEGG
T ss_pred EEEEeCCc-ccCChhHHHHHHHhccccCCCceEEEEEeeechhhccc---cchhhccCCCCCCeEEEecCCCCcccccHH
Confidence 79999887 478899999999885 23467899999999999973 443332 468999999985 88999
Q ss_pred ceeceeEEEecCccccCCCC-CCCCceEEcc
Q 035627 73 SVMHKCVVHFVPIHKHLPNH-KQHPGLSFKR 102 (434)
Q Consensus 73 sI~gKC~V~~~~ey~~lp~~-~e~~~Fic~~ 102 (434)
+|+|+|+|+.+..|..+|.. .....|.++-
T Consensus 120 TIi~~c~V~~~~~~e~~p~~~~~e~t~Fvkl 150 (163)
T 4dov_A 120 TIIGPVQVVALAPEEVIPVDQKSEETLFVKL 150 (163)
T ss_dssp GEEEEEEEEECCTTCCCCSSCCCCSEEEEEE
T ss_pred HeeeceEEEEcCCccccCCCcccceEEEEEE
Confidence 99999999999999999865 3344566554
No 10
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.54 E-value=2.1e-15 Score=112.58 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=42.1
Q ss_pred hcccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccccC
Q 035627 297 QMQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYAS 346 (434)
Q Consensus 297 ~~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~s 346 (434)
+.++.+++|.+|+.+++.|.|+ |+|||||||| +|..|.+|||+|+||
T Consensus 4 ~~~t~~~~Cp~Cg~~~a~f~q~-Q~RsaDE~mT--~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKNCTYTQV-QTRSADEPMT--TFVVCNECGNRWKFC 50 (50)
T ss_dssp CEECCCSCCSSSCSSCEEEEEE-CSSSSSSCCE--EEEEESSSCCEEECC
T ss_pred CceeCccCCCCCCCCEEEEEEe-cCcCCCCCce--EEEEcCCCCCeEEeC
Confidence 3456678999999999999995 9999999999 588999999999986
No 11
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.44 E-value=5.6e-14 Score=153.78 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=79.6
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecCCCceEEEEEEEeChhccCccC----CCCCCCCCCCceeecCCcccccccceecee
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSRDGSMMVTGRWFYHPEEADRKG----GGNWLSGDTRELFYSFHRDEIPVESVMHKC 78 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~~g~~~v~v~WFYRPeEt~~~~----~G~~~~~~~rELF~S~h~D~~pv~sI~gKC 78 (434)
||||++++ +.++|||+|.+||+..+|..+|+|+|||||+||.... ......+++||||+|++.++||+++|.|||
T Consensus 63 ~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~ 141 (784)
T 4ft4_B 63 DVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKV 141 (784)
T ss_dssp EEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEEC
T ss_pred eEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEechHHeeeeE
Confidence 79999854 7899999999999999999999999999999997411 011245689999999999999999999999
Q ss_pred EEEecCccccCCCCC---CCCceEEccce
Q 035627 79 VVHFVPIHKHLPNHK---QHPGLSFKRFM 104 (434)
Q Consensus 79 ~V~~~~ey~~lp~~~---e~~~Fic~~~Y 104 (434)
+|++++.....+... ....|+|...|
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~y 170 (784)
T 4ft4_B 142 KIVHVDPNMDPKAKAQLIESCDLYYDMSY 170 (784)
T ss_dssp CEEECCTTSCHHHHHHHHHHCSEEESEEE
T ss_pred EEEeeCccccchhhhhccCCcceEecccc
Confidence 999887655443321 12346666666
No 12
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.43 E-value=1.6e-13 Score=154.43 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCCCeEEEEeEeeecCCCc-------eEEEEEEEeChhccCccCCCCCCCCCCCceeecCCcccccccceeceeEEEecC
Q 035627 12 NQKPYAASIKDITQSRDGS-------MMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMHKCVVHFVP 84 (434)
Q Consensus 12 ~~~pYIarI~~iwe~~~g~-------~~v~v~WFYRPeEt~~~~~G~~~~~~~rELF~S~h~D~~pv~sI~gKC~V~~~~ 84 (434)
.+|+|||+|.+||...++. .+|+|+|||||+||. ++.......+.||||+|+|.+++|+.+|.|||.|++..
T Consensus 390 ~~P~~IgrI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~-~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~ 468 (1002)
T 3swr_A 390 PEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTH-KSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGE 468 (1002)
T ss_dssp CCCCEEEEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGST-TCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGG
T ss_pred CCCceeeEEeEEEecCCccccCCCccEEEEEEEEECccccc-ccccccccCCcceEEEecceeccCHHHcceEEEEEEec
Confidence 4578899999999765544 899999999999997 22233344588999999999999999999999999999
Q ss_pred ccccCCCC---CCCCceEEccce
Q 035627 85 IHKHLPNH---KQHPGLSFKRFM 104 (434)
Q Consensus 85 ey~~lp~~---~e~~~Fic~~~Y 104 (434)
++..+.+. ...+.|+|...|
T Consensus 469 d~~~~~~~~~~~~p~~fyf~~~Y 491 (1002)
T 3swr_A 469 DLPECVQVYSMGGPNRFYFLEAY 491 (1002)
T ss_dssp GCSSCHHHHHHTSSSEEEEEEEE
T ss_pred cccccchhhccCCCCeEEEEEEE
Confidence 99865431 112456666878
No 13
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.37 E-value=3.2e-13 Score=155.45 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred CCCCeEEEEeEeeecCC------CceEEEEEEEeChhccCccCCCCCCCCCCCceeecCCcccccccceeceeEEEecCc
Q 035627 12 NQKPYAASIKDITQSRD------GSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMHKCVVHFVPI 85 (434)
Q Consensus 12 ~~~pYIarI~~iwe~~~------g~~~v~v~WFYRPeEt~~~~~G~~~~~~~rELF~S~h~D~~pv~sI~gKC~V~~~~e 85 (434)
..|+|||+|.+||...+ +..+|+|+|||||+||.. .......++.||||+|+|.+++|+++|.|||.|++..+
T Consensus 702 ~~Py~IgqI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~-~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d 780 (1330)
T 3av4_A 702 PEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHR-SYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGED 780 (1330)
T ss_dssp CCCCEEEEEEECCCCEETTEECSSCCEEEEEEEECTTTSTT-GGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTT
T ss_pred CCCceEEEEEEEEecCCccccCCCceEEEEEEeeChhhccc-ccccccccCcceEEeeccceecCHHHcCceEEEEeccc
Confidence 35668999999997654 578999999999999973 11123456899999999999999999999999999999
Q ss_pred cccCC---CCCCCCceEEccce
Q 035627 86 HKHLP---NHKQHPGLSFKRFM 104 (434)
Q Consensus 86 y~~lp---~~~e~~~Fic~~~Y 104 (434)
+.... .....+.|+|+..|
T Consensus 781 ~~~~i~~y~~~g~d~Fy~~~~Y 802 (1330)
T 3av4_A 781 LLESIQDYSQGGPDRFYFLEAY 802 (1330)
T ss_dssp CSSCHHHHHHTSTTEEEESCEE
T ss_pred ccccccccccCCCCeEEEEEEe
Confidence 87742 11124789999998
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.20 E-value=2.6e-12 Score=97.74 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=38.9
Q ss_pred ccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccccc
Q 035627 299 QMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYA 345 (434)
Q Consensus 299 q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~ 345 (434)
..+.++|.+||..++.|.|+ |+|||||||| +|..|.+||++|+-
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~-Q~rsadep~T--~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEM-QTRAGDEPST--IFYKCTKCGHTWRS 55 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEE-CCSSSSCSSE--EEEEESSSCCEEEC
T ss_pred CceEeECCCCCCCEEEEEEe-ecccCCCCCc--EEEEcCCCCCEecc
Confidence 33467999999999999995 9999999999 58899999999973
No 15
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.09 E-value=3.3e-11 Score=103.76 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=38.9
Q ss_pred ccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 299 QMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 299 q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
..++++|.+||.+++.|+|+ |+|||||||| +|..|.+|||+|+
T Consensus 69 p~~~~~Cp~C~~~~a~~~q~-q~rsade~mt--~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 69 PRSDKECPRCHQHEAVFYQT-HSRRGDTMMT--LIYVCVHCGFAFE 111 (113)
T ss_dssp CBCCSCCSSSCCSCEEEECC-CCSSCCCCCC--CEEEESSSCCCCC
T ss_pred CCcccCCCCCCCceEEEEEE-ecccCCCCCe--eEEEcCCCCCEEe
Confidence 44568999999999999995 9999999999 5788999999996
No 16
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.07 E-value=4.9e-11 Score=103.96 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=40.0
Q ss_pred cccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccccc
Q 035627 298 MQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYA 345 (434)
Q Consensus 298 ~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~ 345 (434)
+..++.+|.+||.+++.|.|+ |+|||||||| +|.+|.+|||+|+-
T Consensus 68 ~p~t~~~Cp~C~~~~a~~~q~-q~rsade~~t--~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 68 LPRSDRECPKCHSRENVFFQS-QQRRKDTSMV--LFFVCLSCSHIFTS 112 (122)
T ss_dssp SCCCCCCCTTTCCCCEEEEEC-SSCCTTCCCC--EEEEETTTCCEEEC
T ss_pred ccccCCCCCCCCCCEEEEEEe-cCccCCCCce--EEEEeCCCCCEecc
Confidence 344578999999999999995 9999999998 58899999999974
No 17
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=98.97 E-value=5.5e-11 Score=105.29 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred ccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 299 QMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 299 q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
+.++.+|.+|+.+++.|+|+ |+|||||||| +|..|.+|||+|+
T Consensus 89 p~t~~~CpkCg~~~a~f~q~-Q~RsaDE~mT--~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 89 PRSDRECPKCHSRENVFFQL-QIRSADEPMT--TFYKCVNCGHRWK 131 (133)
T ss_dssp ----------------------------------------------
T ss_pred CcccCCCCCCCCceEEEEEE-eeecCCCCCc--EEEEcCCCCCEeC
Confidence 33568999999999999995 9999999999 5788999999996
No 18
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=98.39 E-value=1.7e-07 Score=89.73 Aligned_cols=101 Identities=8% Similarity=-0.061 Sum_probs=69.5
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecC-CCceEEEEEEEeChhccCc------cCCC------CCCC--------CCCCcee
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSR-DGSMMVTGRWFYHPEEADR------KGGG------NWLS--------GDTRELF 61 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~-~g~~~v~v~WFYRPeEt~~------~~~G------~~~~--------~~~rELF 61 (434)
.|+|+.+. .+-..|+.|..|--.. +..+.+.|.||+|..|+.. ..+. ...+ ...+|||
T Consensus 58 sVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELf 136 (232)
T 2fl7_A 58 SVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFFNEVNKSELY 136 (232)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHHHHSCTTEEE
T ss_pred EEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEE
Confidence 46777654 3455566666664433 4578899999999999974 1111 1133 5789999
Q ss_pred ecCCcccccccceeceeEEEecCccccCCC-CCCCCceEEccce
Q 035627 62 YSFHRDEIPVESVMHKCVVHFVPIHKHLPN-HKQHPGLSFKRFM 104 (434)
Q Consensus 62 ~S~h~D~~pv~sI~gKC~V~~~~ey~~lp~-~~e~~~Fic~~~Y 104 (434)
+|.+.|++-+.+|+++|+|+...+|..+.. ......|+|++.+
T Consensus 137 lTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~c 180 (232)
T 2fl7_A 137 LTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYAC 180 (232)
T ss_dssp EEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEEC
T ss_pred EeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEE
Confidence 999999999999999999999999998733 2235689999966
No 19
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=98.35 E-value=1.4e-07 Score=90.56 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=75.3
Q ss_pred EEEEecCCCCCCCeEEEEeEeeecC-CCceEEEEEEEeChhccCc------cCCC------CCCC--------CCCCcee
Q 035627 3 LFSFTPEDTNQKPYAASIKDITQSR-DGSMMVTGRWFYHPEEADR------KGGG------NWLS--------GDTRELF 61 (434)
Q Consensus 3 ~Vll~p~~~~~~pYIarI~~iwe~~-~g~~~v~v~WFYRPeEt~~------~~~G------~~~~--------~~~rELF 61 (434)
.|+|+.+. .+-..|+.|..|--.. +..+.+.|.||+|..|+.. ..+. ...+ ...+|||
T Consensus 58 sVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELf 136 (238)
T 1m4z_A 58 SVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELY 136 (238)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHHHHSCTTEEE
T ss_pred EEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEE
Confidence 46777654 3455566666665433 5578899999999999974 1111 1133 5789999
Q ss_pred ecCCcccccccceeceeEEEecCccccCCCC-CCCCceEEccce
Q 035627 62 YSFHRDEIPVESVMHKCVVHFVPIHKHLPNH-KQHPGLSFKRFM 104 (434)
Q Consensus 62 ~S~h~D~~pv~sI~gKC~V~~~~ey~~lp~~-~e~~~Fic~~~Y 104 (434)
+|.+.|++-+.+|+++|+|+...+|..+... .....|+|++.+
T Consensus 137 lTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~c 180 (238)
T 1m4z_A 137 LTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYIC 180 (238)
T ss_dssp EEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEEC
T ss_pred EeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEE
Confidence 9999999999999999999999999987331 345689999966
No 20
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=83.24 E-value=0.31 Score=40.35 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=20.8
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
|+|+ |+++.+||..+ |.. .|.+||..
T Consensus 49 FkC~-C~~Rt~sl~r~--------P~~-----~C~~Cg~~ 74 (92)
T 2kwq_A 49 FKCP-CGNRTISLDRL--------PKK-----HCSTCGLF 74 (92)
T ss_dssp EECT-TSCEEEESSSS--------CCS-----CCTTTCSC
T ss_pred EECC-CCCceeEeeeC--------CCC-----CCCCCCCC
Confidence 6998 99999999444 554 49999875
No 21
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=69.95 E-value=1.8 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=20.1
Q ss_pred CccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 301 TDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 301 ~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
+-++|+|||. ..++.|+ +.+- -+-|..||.|=
T Consensus 2 ~iY~C~rCg~-~fs~~el-------~~lP---~IrCpyCGyri 33 (48)
T 4ayb_P 2 AVYRCGKCWK-TFTDEQL-------KVLP---GVRCPYCGYKI 33 (48)
T ss_dssp ---CCCCTTT-TCCCCCS-------CCCS---SSCCTTTCCSC
T ss_pred cEEEeeccCC-CccHHHH-------hhCC---CcccCccCcEE
Confidence 4468999975 5666665 2332 24699999985
No 22
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=69.72 E-value=0.66 Score=38.95 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=23.4
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
.|+|..|+.|..-.. |..-|.--+|||.|-+|.|+
T Consensus 13 ~FTC~~C~tRs~k~i------Sk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTM------SKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEETTTTEEEEEEE------EHHHHHTSEEEEECTTTCCE
T ss_pred EEEccCCCCcchhhc------CHHHhhCCEEEEEcCCCccc
Confidence 489999998764211 11113333489999999998
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=68.43 E-value=0.99 Score=32.23 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=20.2
Q ss_pred ccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 304 RCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 304 ~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
.|..|+-.+... | +. .++-+ + .|+.||-+|+
T Consensus 3 ~C~~C~tt~Tp~--W-R~-gp~G~-~-----LCNaCGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQTTPL--W-RR-NPEGQ-P-----LCNACGLFLK 33 (43)
T ss_dssp CCSSSCCCCCSC--C-EE-CTTSC-E-----ECHHHHHHHH
T ss_pred cCCccCCCCCCc--c-cc-CCCCC-c-----ccHHHHHHHH
Confidence 588888776552 3 22 23333 2 4999999997
No 24
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=65.76 E-value=1.5 Score=31.71 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=21.2
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
..|..|+-.+... | +. .++.++ +|+.||-+|+
T Consensus 5 ~~C~~C~tt~Tp~--W-R~-gp~G~~------LCNaCGl~~k 36 (46)
T 1gnf_A 5 RECVNCGATATPL--W-RR-DRTGHY------LCNACGLYHK 36 (46)
T ss_dssp CCCTTTCCCCCSS--C-BC-CTTCCC------BCSHHHHHHH
T ss_pred CCCCCcCCCCCCc--C-cc-CCCCCc------cchHHHHHHH
Confidence 4799998877652 2 22 223333 4999999997
No 25
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=63.99 E-value=1.9 Score=27.35 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=8.7
Q ss_pred cccCcccccCc
Q 035627 337 YCHGHSWYASR 347 (434)
Q Consensus 337 ~~CGnrWk~sr 347 (434)
-+|||.|-+|.
T Consensus 16 dncgnswacsg 26 (27)
T 2hgo_A 16 DNCGNSWACSG 26 (27)
T ss_dssp CSSSCEEECSC
T ss_pred CCcCCcccccC
Confidence 47999998763
No 26
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.33 E-value=4.6 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=17.9
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
.+.|++||...- . . .. ... -|.+||+|=
T Consensus 21 ~Y~C~~Cg~~~~-l----~---~~-~~i-----RC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNT-I----Q---AK-EVI-----RCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCC-C----C---SS-SCC-----CCSSSCCCC
T ss_pred EEECCCCCCeee-c----C---CC-Cce-----ECCCCCcEE
Confidence 479999976442 1 1 11 222 499999996
No 27
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=53.38 E-value=6.4 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred ccCCCCCccccceeeecccCCCCcceeeeeeeccccCccccc
Q 035627 304 RCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYA 345 (434)
Q Consensus 304 ~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~ 345 (434)
.|.-|+...+.+.- . . .+ .|..|..||.++-.
T Consensus 2 lC~~C~~peT~l~~---~----~-~~--~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIK---E----G-RV--HLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEE---E----T-TE--EEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEE---e----C-Cc--EEEEhhcCCCcccc
Confidence 58899998887622 1 1 22 35679999999853
No 28
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=51.71 E-value=3.2 Score=31.93 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=21.5
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
..|..|+-.++.. | +. .++.++ +|+.||-+|+
T Consensus 8 ~~C~~C~tt~Tp~--W-R~-gp~G~~------LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTL--W-RR-NANGDP------VCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSS--C-CC-CTTSCC------CCHHHHHHHH
T ss_pred CcCCCcCCCCCCc--c-CC-CCCCCc------hhhHHHHHHH
Confidence 4799998877653 3 22 233332 4999999996
No 29
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=48.60 E-value=4.5 Score=31.83 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=22.7
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
...|..|+-.+.. +| +...+++.+ +|+.||-+|+
T Consensus 8 ~~~C~nC~tt~Tp--~W-Rrg~~~~g~------LCNACGl~~~ 41 (71)
T 2kae_A 8 SFQCSNCSVTETI--RW-RNIRSKEGI------QCNACFIYQR 41 (71)
T ss_dssp CCCCSSSCCSCCS--SC-CCCSSSSCC------CSSHHHHHHH
T ss_pred CCcCCccCCCCCC--cc-ccCCCCCCc------cchHHHHHHH
Confidence 3589999988765 23 222133333 4999999997
No 30
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=46.83 E-value=5.3 Score=33.38 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.4
Q ss_pred hhccc-cchhHHHHhHHHHhHhCCCCCCCccc
Q 035627 118 TMKII-SSMRLISLDQKTRVRFGDLPDIEPQE 148 (434)
Q Consensus 118 ~~~~~-~~~EId~Lv~Kti~kw~d~vd~EK~~ 148 (434)
.++.| .+.+|..|++.+|.+|+.+++.+...
T Consensus 61 ~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~~~ 92 (103)
T 1wjt_A 61 GVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTT 92 (103)
T ss_dssp HHHHHCCCSHHHHHHHHHHHHHHHHTCCSCCC
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35566 88999999999999999999986654
No 31
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=43.12 E-value=8.6 Score=33.77 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=21.6
Q ss_pred hcccCcc-ccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 297 QMQMTDA-RCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 297 ~~q~~~~-~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
..-|+.+ .|-+|... -||-+ -.+. .|..||+-|-
T Consensus 21 g~~M~~lP~CP~C~se-ytYeD--------g~l~-----vCPeC~hEW~ 55 (138)
T 2akl_A 21 GHMVSTLPPCPQCNSE-YTYED--------GALL-----VCPECAHEWS 55 (138)
T ss_dssp --CCCCSCCCTTTCCC-CCEEC--------SSSE-----EETTTTEEEC
T ss_pred ccccccCCCCCCCCCc-ceEec--------CCeE-----ECCccccccC
Confidence 4456665 89999654 45633 2332 3999999994
No 32
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=43.06 E-value=48 Score=26.58 Aligned_cols=60 Identities=10% Similarity=0.188 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhhccCCCCCCC----hhhHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 035627 190 ETYRDKWLERLLQGLQHNGNSFLW----PDTAIAAVTALEKASHDALSSDFQKRNQKLRQLLFNL 250 (434)
Q Consensus 190 d~~RDkcielLy~aL~~~~~s~~~----~~~v~~~A~~IE~a~~~~~~~~~~~Yk~K~Rsl~~NL 250 (434)
...|+..++.|+.|+-...+.... -..++..|..+|..+|+.- .+-..|=+-+-..+.++
T Consensus 12 ~~lR~hlv~Klv~aI~P~pdp~a~~d~rm~~l~~yArkvE~~~ye~A-~srdeYY~llA~kiyki 75 (81)
T 1kdx_A 12 QDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESA-NSRDEYYHLLAEKIYKI 75 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCSSGGGGGSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Confidence 689999999999999876332211 1237788999999999876 34557777776666666
No 33
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=41.25 E-value=4.2 Score=31.54 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=23.9
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc-cCcc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY-ASRN 348 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk-~sr~ 348 (434)
...|..|+-.++.. | +. ..+.++ +|+.||-+|+ +.+.
T Consensus 9 ~~~C~~C~t~~Tp~--W-R~-gp~G~~------LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 9 PTTCTNCFTQTTPL--W-RR-NPEGQP------LCNACGLFLKLHGVV 46 (66)
T ss_dssp SCCCTTTCCCCCSS--C-EE-ETTTEE------ECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCc--C-Cc-CCCCCC------ccHHHHHHHHHcCCC
Confidence 35899999877662 3 22 223332 4999999996 4443
No 34
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.54 E-value=8 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=22.0
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
+.+|..|+.-.+-|.. .+ +.|.|..||.-
T Consensus 36 ~VkCp~C~~~~~VFSh---------A~---t~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSH---------SQ---TVVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETT---------CS---SCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEec---------CC---cEEEccCCCCE
Confidence 3599999998888754 33 35789999963
No 35
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone, chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Probab=40.13 E-value=5.1 Score=39.21 Aligned_cols=22 Identities=5% Similarity=0.151 Sum_probs=0.0
Q ss_pred eeeccccCcccccCccccccee
Q 035627 333 ALGVYCHGHSWYASRNEASSLT 354 (434)
Q Consensus 333 FvtC~~CGnrWk~sr~~~~~~~ 354 (434)
-++|.-||.++.|+.+++..|-
T Consensus 260 ev~C~FC~~~Y~F~~~dl~~l~ 281 (292)
T 1i7f_A 260 DMHCDYCGNHYLFNAMDIAEIR 281 (292)
T ss_dssp ----------------------
T ss_pred EEEeeCCCCEEEeCHHHHHHHH
Confidence 4579999999999999998885
No 36
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=39.16 E-value=8.3 Score=31.13 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=21.2
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
.+|..|..-.+-|.. .+ +.|.|..||.-
T Consensus 33 VkCp~C~n~q~VFSh---------A~---t~V~C~~Cg~~ 60 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSN---------AQ---STIICEKCSAI 60 (81)
T ss_dssp EECSSSCCEEEEETT---------CS---SCEECSSSCCE
T ss_pred eECCCCCCeeEEEec---------Cc---cEEEccCCCCE
Confidence 499999988887744 33 35789999963
No 37
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=38.42 E-value=10 Score=29.43 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=21.8
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
+.+|..|..-.+-|.. .++ -|.|..||.-
T Consensus 7 ~VKCp~C~niq~VFSh---------A~t---vV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDH---------PST---IVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESS---------CSS---CEECSSSCCE
T ss_pred EEECCCCCCceEEEec---------Cce---EEEcccCCCE
Confidence 3589999998888754 343 4689999963
No 38
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=37.68 E-value=16 Score=31.02 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=21.7
Q ss_pred cccCCCCC-----ccccceeeecccCCCCcceeeeeeeccccCccccc
Q 035627 303 ARCSRCNE-----CKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYA 345 (434)
Q Consensus 303 ~~CgkCk~-----~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~ 345 (434)
.-|.+|+. .+|+. +.++.-.+. +-++|..||+.=.|
T Consensus 66 ~~Ck~C~s~LiPG~t~~v----ri~~~~~~~---vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARV----RLRTKRMPH---VVITCLECGYIMRY 106 (120)
T ss_dssp SBCTTTCCBCCBTTTEEE----EEECSSSCE---EEEEETTTCCEEEE
T ss_pred HhccCCCCEeECCCceEE----EEecCCccE---EEEECCCCCCEEEE
Confidence 37999987 44553 233322233 45689999986543
No 39
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.46 E-value=16 Score=34.99 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=22.7
Q ss_pred ccccCCCCCccccceeeecc-cCCCCcceeeeeeeccccCcc-cccCcc
Q 035627 302 DARCSRCNECKVGLRDIIQA-GLGDRYQQLSKALGVYCHGHS-WYASRN 348 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qt-rsaDe~mtt~~FvtC~~CGnr-Wk~sr~ 348 (434)
.|+|.+|+.. .|.. |+ +.-.+|. .|.+||++ |....+
T Consensus 134 ~f~C~~C~~~--~~v~--~~~~~~~~P~------~Cp~C~~~~f~l~~~ 172 (279)
T 1ltl_A 134 VFECRGCMRH--HAVT--QSTNMITEPS------LCSECGGRSFRLLQD 172 (279)
T ss_dssp EEEETTTCCE--EEEE--CSSSSCCCCS------CCTTTCCCCEEECGG
T ss_pred EEEcCCCCCE--EEEE--ecCCcccCCC------cCCCCCCCCcEEecc
Confidence 4799999953 3433 33 2233443 49999998 765443
No 40
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=35.33 E-value=17 Score=31.08 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=21.4
Q ss_pred cccCCCCC-----ccccceeeecccCCCCcceeeeeeeccccCccccc
Q 035627 303 ARCSRCNE-----CKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWYA 345 (434)
Q Consensus 303 ~~CgkCk~-----~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk~ 345 (434)
.-|.+|+. .+++. ..++.-.+. +.++|..||+.=.|
T Consensus 61 ~~Ck~C~s~LIPG~t~~v----ri~~~~k~~---vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARV----RLRQKRMPH---IVVKCLECGHIMRY 101 (123)
T ss_dssp SBCTTTCCBCCBTTTEEE----EEECSSSCE---EEEEETTTTEEEEE
T ss_pred HhccCCCCEeECCCceEE----EEecCCccE---EEEECCCCCCEEEE
Confidence 37999987 44443 222222233 45689999986543
No 41
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.87 E-value=18 Score=28.22 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=17.4
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
.+.|+.||...-- . ..| .. .|-.||+|=
T Consensus 28 ~Y~C~~CG~~~e~-----~--~~d-~i------rCp~CG~RI 55 (70)
T 1twf_L 28 KYICAECSSKLSL-----S--RTD-AV------RCKDCGHRI 55 (70)
T ss_dssp CEECSSSCCEECC-----C--TTS-TT------CCSSSCCCC
T ss_pred EEECCCCCCccee-----C--CCC-Cc------cCCCCCceE
Confidence 4799999876321 1 111 22 499999963
No 42
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.92 E-value=17 Score=27.99 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=20.7
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGH 341 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGn 341 (434)
.+|..|..-.+-|.. .++ -|.|..||.
T Consensus 16 VkCp~C~~~q~VFSh---------a~t---~V~C~~Cgt 42 (63)
T 3j20_W 16 VKCIDCGNEQIVFSH---------PAT---KVRCLICGA 42 (63)
T ss_dssp EECSSSCCEEEEESS---------CSS---CEECSSSCC
T ss_pred EECCCCCCeeEEEec---------CCe---EEEccCcCC
Confidence 499999998887754 343 468999996
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.51 E-value=29 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=18.9
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeecc-ccCccccc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVY-CHGHSWYA 345 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~-~CGnrWk~ 345 (434)
...|+.|++. | ..|+.|.+ |. .|. +|++
T Consensus 8 ~~~C~~C~~p---~-------~~~~~mI~-----CD~~C~-~WfH 36 (65)
T 2vpb_A 8 VYPCGICTNE---V-------NDDQDAIL-----CEASCQ-KWFH 36 (65)
T ss_dssp -CBCTTTCSB---C-------CTTSCEEE-----BTTTTC-CEEE
T ss_pred cCcCccCCCc---c-------CCCCCeEe-----cccCcc-ccCc
Confidence 3579999775 2 13457765 98 886 9974
No 44
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=27.41 E-value=21 Score=28.86 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.5
Q ss_pred ccccCCCCCccccceeeecccCCCCcceeeeeeeccccCc
Q 035627 302 DARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGH 341 (434)
Q Consensus 302 ~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGn 341 (434)
+.+|..|+.-.+-|.. .++ -|.|..||.
T Consensus 34 ~VkCp~C~~~q~VFSh---------a~t---~V~C~~Cg~ 61 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSH---------AQT---AVTCESCST 61 (82)
T ss_dssp EEECTTSCSCEEEESB---------CSS---CCCCSSSCC
T ss_pred EEECCCCCCeeEEEec---------CCe---EEEccccCC
Confidence 3499999998888755 343 468999996
No 45
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.04 E-value=42 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=25.1
Q ss_pred HHHhhcccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 293 DESEQMQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 293 ~~i~~~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
.+|+..|.....|..|++.++--.. + -.-.|-.||..|
T Consensus 26 kkie~~q~~ky~CpfCGk~~vkR~a-----------~--GIW~C~kCg~~~ 63 (83)
T 3j21_i 26 AAVEAKMRQKHTCPVCGRKAVKRIS-----------T--GIWQCQKCGATF 63 (83)
T ss_dssp HHHHHHHHSCBCCSSSCSSCEEEEE-----------T--TEEEETTTCCEE
T ss_pred HHHHHHhhcccCCCCCCCceeEecC-----------c--CeEEcCCCCCEE
Confidence 4556667778999999998764211 0 112499998865
No 46
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.45 E-value=47 Score=23.39 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=19.8
Q ss_pred cccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 303 ARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 303 ~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
+.|..||.....|.. ..+ -..|..||.-+-
T Consensus 6 ~~CP~C~~~~l~~d~----------~~g--elvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDP----------ERG--EIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEET----------TTT--EEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcC----------CCC--eEECcccCCccc
Confidence 589999887776621 111 124999998764
No 47
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=22.96 E-value=37 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=22.4
Q ss_pred HHHhhcccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCcc
Q 035627 293 DESEQMQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHS 342 (434)
Q Consensus 293 ~~i~~~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnr 342 (434)
.+|+..|-..+.|..||...+ ++. -+. -..|..||+.
T Consensus 18 k~ie~~q~~~y~Cp~CG~~~v-~r~----------atG--iW~C~~Cg~~ 54 (83)
T 1vq8_Z 18 AEIESEMNEDHACPNCGEDRV-DRQ----------GTG--IWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHSCEECSSSCCEEE-EEE----------ETT--EEEETTTCCE
T ss_pred HHHHHhccccCcCCCCCCcce-ecc----------CCC--eEECCCCCCE
Confidence 344444556789999997433 222 111 2259999985
No 48
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.89 E-value=37 Score=30.12 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=22.1
Q ss_pred ccCCCCCccccceeeecccCCCCcceeeeeeeccccCcccc
Q 035627 304 RCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSWY 344 (434)
Q Consensus 304 ~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrWk 344 (434)
.|.-|+...+.+. . . + -+ -|..|..||.+.-
T Consensus 106 lC~~C~sPdT~L~---k-~--~-r~---~~l~C~ACGa~~~ 136 (148)
T 2d74_B 106 ICPVCGSPDTKII---K-R--D-RF---HFLKCEACGAETP 136 (148)
T ss_dssp SCSSSCCTTCCCC---B-S--S-SS---BCCCCSSSCCCCC
T ss_pred ECCCCCCcCcEEE---E-e--C-CE---EEEEecCCCCCcc
Confidence 8999999998762 1 1 1 12 2557999999874
No 49
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.54 E-value=48 Score=26.08 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHhhcccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 293 DESEQMQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 293 ~~i~~~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
.+|+..|-....|..|++.++--. + + -.-.|-.||..|
T Consensus 17 kkie~~q~~ky~C~fCgk~~vkR~-------a----~--GIW~C~~C~~~~ 54 (72)
T 3jyw_9 17 KKLEIQQHARYDCSFCGKKTVKRG-------A----A--GIWTCSCCKKTV 54 (72)
T ss_dssp HHHHHHHHSCBCCSSCCSSCBSBC-------S----S--SCBCCSSSCCCC
T ss_pred HHHHHHhccCccCCCCCCceeEec-------C----C--CeEECCCCCCEE
Confidence 455555667889999998776421 1 0 111499998765
No 50
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.03 E-value=71 Score=25.11 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHhhcccCccccCCCCCccccceeeecccCCCCcceeeeeeeccccCccc
Q 035627 293 DESEQMQMTDARCSRCNECKVGLRDIIQAGLGDRYQQLSKALGVYCHGHSW 343 (434)
Q Consensus 293 ~~i~~~q~~~~~CgkCk~~k~ty~q~~qtrsaDe~mtt~~FvtC~~CGnrW 343 (434)
.+|+..|-....|..|++.++-- .. +-.-.|-.||..|
T Consensus 18 kkie~~q~~ky~C~fCgk~~vkR------------~a-~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 18 RDVEIKHKKKYKCPVCGFPKLKR------------AS-TSIWVCGHCGYKI 55 (73)
T ss_pred HHHHHhcccCccCCCCCCceeEE------------EE-eEEEECCCCCcEE
Confidence 45666677788999999876652 11 1234599998864
Done!