BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035629
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71
L KGPWT EED ++I ++Q +GP W ++ K+ R GK CR RW N+L P++K+ ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN +KN+WN+ +R+++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71
L KGPWT EED ++I +Q +GP W + K+ R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 110 bits (274), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71
L KGPWT EED ++I +Q +GP W + K+ R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 108 bits (269), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71
L KGPWT EED K+I ++ +G W + K+ R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I + H +LGN+W+ IA LPGRTDN +KN+WN+ I++++
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 63 PDIKRGRFSFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
PD+ +G ++ EE++ +I+L G K W+ IA L GR + + W+ H+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71
L KGPWT EED ++I +Q +GP W + K+ R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGL--QRCGKSCRLRWTNYLRPDIKRGRFS 71
KGP+T ED + Y++ +GP NW P+ R K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNG 120
EE+ETI + + LG+KWS IA +PGRTDN IKN WN+ I KR+ N
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS 107
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69
KK +TPEED L + HG +W+ + R + CR RW NYL P I
Sbjct: 7 KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64
Query: 70 FSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
++ EE+ ++Q G +W+ IA PGRTD IKN W T
Sbjct: 65 WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 66 KRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112
K+ +F+ EE+E + + + G+ W IAA P R + ++ W ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 65 IKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
+K+ ++ EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 64 DIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
++K+ ++ EE+ + Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFE 73
K +T EED KL + +G +W + + + R + CR RW NY+ P ++ +S E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115
E+ + Q ++ G KW+ I+ L R+DN I+N W R R
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EED +LI +Q +GP W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EED ++I +Q +GP W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EED ++I +Q +GP W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED KL ++ +G +W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED KL ++ +G +W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 17 WTPEEDHKLISYIQLHGPGNWRNLPKNAGL--QRCGKSCRLRWTNYLRPDIKRGRFS 71
W ED L + + +G W + A L ++ K C+ RW +L P IK+ +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG-LQRCGKSCRLRWTNYLR 62
N KK WT EE + + +Q +G GNW + KN + R + RW R
Sbjct: 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG-LQRCGKSCRLRWTNYLR 62
N KK WT EE + + +Q +G GNW + KN + R + RW R
Sbjct: 10 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKN-AGLQRCGKSCRLRWTNYLR 62
N KK WT EE + + +Q +G GNW + KN + R + RW R
Sbjct: 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +Q +G GNW + KN + R + RW R
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG-LQRCGKSCRLRWTNYLR 62
N KK WT EE + + +Q +G GNW + KN + R + RW R
Sbjct: 6 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 59
>pdb|2X03|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
pdb|2X03|B Chain B, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
Length = 765
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 65 IKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPV 124
I RG ++ + H G + A A L G N + W+ I+ + R+ + PV
Sbjct: 309 ISRGYLKSDDLHVMRSDH-FHGQQLIAAMAVLAGGASNAERERWHARIKGWIERDTVTPV 367
Query: 125 THAPRLDLLDLS 136
AP+ + DL+
Sbjct: 368 LTAPQFPVADLT 379
>pdb|2WDA|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase In Complex With Chondroitin
Sulphate
pdb|2WCO|A Chain A, Structures Of The Streptomyces Coelicolor A3(2) Hyaluronan
Lyase In Complex With Oligosaccharide Substrates And An
Inhibitor
Length = 765
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 65 IKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPV 124
I RG ++ + H G + A A L G N + W+ I+ + R+ + PV
Sbjct: 309 ISRGYLKSDDLHVMRSDH-FHGQQLIAAMAVLAGGASNAERERWHARIKGWIERDTVTPV 367
Query: 125 THAPRLDLLDLS 136
AP+ + DL+
Sbjct: 368 LTAPQFPVADLT 379
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61
K WT EED +L + ++ G +W+ L + R + C+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 69 RFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVT 125
+++ EE+E Q + G +W+ I+ + RT ++K+Y + + + ++ G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKET 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,654,467
Number of Sequences: 62578
Number of extensions: 303131
Number of successful extensions: 586
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 42
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)