Query 035629
Match_columns 352
No_of_seqs 279 out of 2148
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-41 5.7E-46 298.7 5.7 150 11-171 3-153 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 3.4E-33 1.2E-37 238.8 9.5 110 13-123 1-110 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 2E-33 6.9E-38 239.0 5.9 121 40-171 1-122 (128)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-32 4.9E-37 225.9 8.5 105 11-116 1-105 (105)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.1E-32 7.1E-37 232.8 7.8 113 2-115 15-127 (128)
6 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.3E-32 1.5E-36 224.4 7.2 104 14-118 1-104 (107)
7 3osg_A MYB21; transcription-DN 100.0 1.8E-31 6E-36 226.9 8.4 106 8-115 5-110 (126)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 7.1E-30 2.4E-34 224.5 6.4 113 3-116 47-159 (159)
9 3osg_A MYB21; transcription-DN 99.9 1.7E-26 5.7E-31 196.1 6.7 109 62-180 6-114 (126)
10 1gv2_A C-MYB, MYB proto-oncoge 99.9 2.2E-26 7.6E-31 188.9 5.9 98 64-171 1-99 (105)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 5.8E-26 2E-30 187.6 4.9 94 67-170 1-95 (107)
12 3zqc_A MYB3; transcription-DNA 99.9 1.6E-25 5.5E-30 191.2 6.3 99 67-175 2-101 (131)
13 2dim_A Cell division cycle 5-l 99.8 2.2E-21 7.7E-26 148.6 1.4 67 8-75 3-69 (70)
14 2dim_A Cell division cycle 5-l 99.8 3E-19 1E-23 136.7 5.8 65 62-126 4-69 (70)
15 2din_A Cell division cycle 5-l 99.7 2E-17 6.9E-22 125.1 6.3 60 60-120 2-61 (66)
16 1ign_A Protein (RAP1); RAP1,ye 99.7 1.5E-17 5.3E-22 153.9 5.5 106 9-115 3-200 (246)
17 2llk_A Cyclin-D-binding MYB-li 99.7 1.6E-17 5.5E-22 128.6 4.1 57 54-111 10-66 (73)
18 2d9a_A B-MYB, MYB-related prot 99.7 2.5E-17 8.7E-22 122.2 4.8 56 62-117 3-59 (60)
19 2cu7_A KIAA1915 protein; nucle 99.7 7.1E-17 2.4E-21 124.2 6.5 65 61-126 3-67 (72)
20 1guu_A C-MYB, MYB proto-oncoge 99.7 6.8E-17 2.3E-21 116.5 5.2 50 65-114 1-51 (52)
21 1gvd_A MYB proto-oncogene prot 99.7 7.8E-17 2.7E-21 116.3 5.2 50 65-114 1-51 (52)
22 2juh_A Telomere binding protei 99.7 2.3E-17 8E-22 139.1 2.5 83 8-91 11-103 (121)
23 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-16 5.9E-21 121.0 6.7 61 61-121 4-67 (69)
24 1ign_A Protein (RAP1); RAP1,ye 99.6 1.2E-16 4.3E-21 147.9 5.8 113 63-175 4-199 (246)
25 2d9a_A B-MYB, MYB-related prot 99.6 7.6E-17 2.6E-21 119.6 2.6 57 9-66 3-59 (60)
26 2roh_A RTBP1, telomere binding 99.6 1.8E-16 6.2E-21 133.8 4.0 78 10-88 27-114 (122)
27 1gvd_A MYB proto-oncogene prot 99.6 1.7E-16 5.7E-21 114.5 2.4 52 12-64 1-52 (52)
28 3sjm_A Telomeric repeat-bindin 99.6 7E-16 2.4E-20 116.4 5.5 52 65-116 9-63 (64)
29 1x41_A Transcriptional adaptor 99.6 7.6E-16 2.6E-20 114.5 5.1 54 62-115 3-57 (60)
30 1w0t_A Telomeric repeat bindin 99.6 1.1E-15 3.7E-20 110.8 5.5 49 66-114 1-52 (53)
31 1guu_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.4E-21 113.8 1.4 52 12-64 1-52 (52)
32 2yum_A ZZZ3 protein, zinc fing 99.6 1.5E-15 5.1E-20 117.5 5.7 62 62-123 3-70 (75)
33 1ity_A TRF1; helix-turn-helix, 99.6 7.3E-16 2.5E-20 117.5 2.3 64 8-71 4-68 (69)
34 2elk_A SPCC24B10.08C protein; 99.5 4.6E-15 1.6E-19 109.6 5.6 50 63-112 5-56 (58)
35 1x41_A Transcriptional adaptor 99.5 2.1E-15 7.1E-20 112.1 1.6 55 9-64 3-57 (60)
36 2juh_A Telomere binding protei 99.5 5.4E-15 1.9E-19 124.6 3.4 83 61-152 11-103 (121)
37 3sjm_A Telomeric repeat-bindin 99.5 2.5E-15 8.4E-20 113.4 1.2 56 11-66 8-64 (64)
38 2din_A Cell division cycle 5-l 99.5 2E-15 6.7E-20 114.1 -1.6 59 7-68 2-60 (66)
39 2yum_A ZZZ3 protein, zinc fing 99.5 6.1E-15 2.1E-19 114.0 0.0 61 9-70 3-68 (75)
40 2roh_A RTBP1, telomere binding 99.4 7.8E-14 2.7E-18 117.7 6.4 74 63-136 27-111 (122)
41 2ltp_A Nuclear receptor corepr 99.2 8.5E-15 2.9E-19 117.2 0.0 56 60-115 9-64 (89)
42 2elk_A SPCC24B10.08C protein; 99.4 1.9E-14 6.5E-19 106.3 1.7 52 10-61 5-56 (58)
43 1w0t_A Telomeric repeat bindin 99.4 1.5E-14 5.2E-19 104.7 1.1 50 13-62 1-51 (53)
44 2llk_A Cyclin-D-binding MYB-li 99.4 5.3E-14 1.8E-18 108.8 2.2 63 2-68 11-73 (73)
45 2cu7_A KIAA1915 protein; nucle 99.4 2.5E-14 8.4E-19 110.0 0.2 59 7-67 2-60 (72)
46 2yus_A SWI/SNF-related matrix- 99.4 3.2E-13 1.1E-17 105.9 4.2 48 64-111 15-62 (79)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5.8E-13 2E-17 103.0 5.5 52 62-113 13-68 (73)
48 2aje_A Telomere repeat-binding 99.4 1.3E-12 4.6E-17 107.5 7.9 62 62-123 8-79 (105)
49 2ckx_A NGTRF1, telomere bindin 99.3 1.3E-12 4.4E-17 103.4 6.7 52 68-119 1-62 (83)
50 2ckx_A NGTRF1, telomere bindin 99.3 4.8E-13 1.6E-17 105.8 3.2 69 15-84 1-79 (83)
51 2aje_A Telomere repeat-binding 99.3 5.5E-13 1.9E-17 109.8 3.6 79 7-86 6-94 (105)
52 2yus_A SWI/SNF-related matrix- 99.3 1.5E-12 5.2E-17 102.1 3.1 54 6-61 10-63 (79)
53 2ltp_A Nuclear receptor corepr 98.8 1.6E-12 5.3E-17 104.0 0.0 55 7-63 9-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.1E-12 7.1E-17 99.8 0.5 57 6-63 10-69 (73)
55 2cjj_A Radialis; plant develop 99.1 4.7E-11 1.6E-15 96.3 5.3 49 66-114 7-59 (93)
56 1x58_A Hypothetical protein 49 99.1 1.1E-10 3.6E-15 87.2 6.0 49 66-114 7-58 (62)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 9.3E-10 3.2E-14 81.8 5.7 47 66-112 11-57 (61)
58 2cjj_A Radialis; plant develop 98.8 3.3E-10 1.1E-14 91.3 -0.1 48 13-61 7-57 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.7 8.2E-09 2.8E-13 79.4 5.0 51 64-115 5-59 (72)
60 3hm5_A DNA methyltransferase 1 98.7 1.1E-08 3.6E-13 82.4 5.2 66 51-120 18-88 (93)
61 1x58_A Hypothetical protein 49 98.7 3.8E-09 1.3E-13 78.8 1.3 51 11-63 5-58 (62)
62 2iw5_B Protein corest, REST co 98.6 1.7E-08 5.7E-13 92.9 4.6 49 66-114 132-180 (235)
63 1fex_A TRF2-interacting telome 98.6 4.2E-08 1.4E-12 72.6 4.3 47 67-113 2-58 (59)
64 2eqr_A N-COR1, N-COR, nuclear 98.5 1.9E-08 6.6E-13 74.7 2.0 51 8-60 6-56 (61)
65 2xag_B REST corepressor 1; ami 98.5 4.5E-08 1.5E-12 99.2 4.4 44 68-111 381-424 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.4 1.6E-07 5.6E-12 72.3 4.1 47 67-113 8-58 (73)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.1E-08 1.1E-12 76.1 -0.2 52 10-63 4-58 (72)
68 1fex_A TRF2-interacting telome 98.2 1.8E-07 6.3E-12 69.1 0.4 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 2.2E-07 7.7E-12 71.5 0.6 48 14-62 8-58 (73)
70 2yqk_A Arginine-glutamic acid 98.1 5.5E-06 1.9E-10 61.8 6.0 49 62-110 4-53 (63)
71 2iw5_B Protein corest, REST co 98.1 1E-06 3.6E-11 81.0 1.8 50 11-62 130-179 (235)
72 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 1E-10 65.1 1.7 43 67-109 20-66 (74)
73 4eef_G F-HB80.4, designed hema 97.8 3.6E-06 1.2E-10 64.6 1.0 44 14-58 20-66 (74)
74 4a69_C Nuclear receptor corepr 97.7 3.5E-05 1.2E-09 61.9 5.2 44 67-110 43-86 (94)
75 1ofc_X ISWI protein; nuclear p 97.6 7.4E-05 2.5E-09 71.8 6.9 98 15-113 111-274 (304)
76 2crg_A Metastasis associated p 97.6 6.8E-05 2.3E-09 57.0 5.0 44 67-110 8-52 (70)
77 1ug2_A 2610100B20RIK gene prod 97.6 6.2E-05 2.1E-09 59.9 4.6 46 69-114 35-83 (95)
78 2yqk_A Arginine-glutamic acid 97.5 3.2E-05 1.1E-09 57.6 2.5 49 8-58 3-52 (63)
79 2lr8_A CAsp8-associated protei 96.5 2.6E-05 8.8E-10 58.9 0.0 44 69-113 16-62 (70)
80 4iej_A DNA methyltransferase 1 97.3 0.00042 1.4E-08 55.5 6.3 53 67-119 30-87 (93)
81 2ebi_A DNA binding protein GT- 97.3 0.00021 7E-09 56.0 4.0 50 66-115 3-66 (86)
82 3hm5_A DNA methyltransferase 1 97.0 0.00014 4.6E-09 58.5 0.7 48 13-61 29-80 (93)
83 2xag_B REST corepressor 1; ami 97.0 0.0002 7E-09 72.6 1.9 48 11-60 377-424 (482)
84 4b4c_A Chromodomain-helicase-D 96.9 0.00087 3E-08 60.3 4.7 41 13-54 6-50 (211)
85 4a69_C Nuclear receptor corepr 96.7 0.00042 1.4E-08 55.6 1.4 43 14-58 43-85 (94)
86 2crg_A Metastasis associated p 96.7 0.00048 1.6E-08 52.3 1.4 44 13-58 7-51 (70)
87 2ebi_A DNA binding protein GT- 96.4 0.00025 8.5E-09 55.5 -2.1 49 13-61 3-63 (86)
88 2lr8_A CAsp8-associated protei 94.8 0.0015 5E-08 49.3 0.0 47 14-62 14-62 (70)
89 1ug2_A 2610100B20RIK gene prod 95.3 0.004 1.4E-07 49.5 0.7 46 14-60 33-80 (95)
90 2y9y_A Imitation switch protei 95.1 0.04 1.4E-06 54.2 7.3 100 15-114 124-291 (374)
91 1irz_A ARR10-B; helix-turn-hel 94.3 0.077 2.6E-06 39.6 5.4 48 65-112 5-57 (64)
92 4b4c_A Chromodomain-helicase-D 94.2 0.035 1.2E-06 49.6 4.3 38 5-42 125-162 (211)
93 3iot_A Maltose-binding protein 93.8 0.02 6.9E-07 56.0 2.0 15 15-29 125-139 (449)
94 4iej_A DNA methyltransferase 1 93.4 0.02 6.9E-07 45.8 0.8 48 13-61 29-80 (93)
95 3iot_A Maltose-binding protein 93.0 0.022 7.5E-07 55.8 0.7 6 17-22 183-188 (449)
96 2xb0_X Chromo domain-containin 90.7 0.11 3.8E-06 49.0 2.7 28 15-42 169-196 (270)
97 1ofc_X ISWI protein; nuclear p 89.4 0.52 1.8E-05 45.1 6.1 41 68-108 111-152 (304)
98 2xb0_X Chromo domain-containin 89.0 0.22 7.4E-06 47.0 3.1 27 68-94 169-196 (270)
99 1irz_A ARR10-B; helix-turn-hel 82.2 0.44 1.5E-05 35.4 1.2 48 11-59 4-55 (64)
100 2y9y_A Imitation switch protei 69.1 2.4 8.4E-05 41.6 2.8 32 13-44 227-261 (374)
101 3cz6_A DNA-binding protein RAP 54.6 9.6 0.00033 33.2 3.6 25 10-34 110-142 (168)
102 2rq5_A Protein jumonji; develo 50.6 3 0.0001 34.5 -0.2 46 35-83 64-113 (121)
103 2li6_A SWI/SNF chromatin-remod 48.8 7.7 0.00026 31.5 2.0 39 77-115 53-99 (116)
104 2lm1_A Lysine-specific demethy 46.1 19 0.00065 28.4 3.9 39 77-115 48-98 (107)
105 2jrz_A Histone demethylase jar 45.2 17 0.00059 29.4 3.6 39 77-115 44-94 (117)
106 2cxy_A BAF250B subunit, HBAF25 44.9 29 0.001 28.3 5.0 48 77-124 55-117 (125)
107 1kkx_A Transcription regulator 42.1 14 0.00047 30.4 2.5 38 78-115 53-98 (123)
108 3cz6_A DNA-binding protein RAP 40.6 22 0.00074 31.0 3.6 24 63-86 110-141 (168)
109 2eqy_A RBP2 like, jumonji, at 39.4 25 0.00086 28.7 3.7 39 77-115 46-96 (122)
110 1c20_A DEAD ringer protein; DN 38.4 26 0.00089 28.7 3.7 39 77-115 56-107 (128)
111 2rq5_A Protein jumonji; develo 38.2 24 0.00083 28.9 3.4 77 14-116 7-98 (121)
112 2li6_A SWI/SNF chromatin-remod 35.7 5.3 0.00018 32.4 -1.0 39 24-63 53-98 (116)
113 2jxj_A Histone demethylase jar 35.2 18 0.00061 28.0 2.0 37 78-114 41-89 (96)
114 2jvw_A Uncharacterized protein 34.9 7 0.00024 30.5 -0.4 45 22-79 18-69 (88)
115 1qb3_A Cyclin-dependent kinase 33.3 9 0.00031 32.8 0.0 16 68-83 11-26 (150)
116 2kk0_A AT-rich interactive dom 33.0 30 0.001 29.1 3.2 39 77-115 68-119 (145)
117 2o8x_A Probable RNA polymerase 30.6 44 0.0015 23.0 3.4 41 70-112 16-56 (70)
118 3i4p_A Transcriptional regulat 29.5 34 0.0012 28.5 3.0 45 73-118 3-48 (162)
119 2k27_A Paired box protein PAX- 29.5 1.2E+02 0.004 24.7 6.4 67 15-86 24-100 (159)
120 1ku3_A Sigma factor SIGA; heli 28.4 51 0.0017 23.4 3.5 41 70-112 11-55 (73)
121 3abd_X REV3, HREV3, DNA polyme 26.8 14 0.00046 25.7 0.0 20 304-323 2-21 (52)
122 2p1m_A SKP1-like protein 1A; F 24.6 23 0.0008 29.9 1.1 35 38-80 119-153 (160)
123 1ig6_A MRF-2, modulator recogn 22.8 23 0.00079 28.0 0.7 38 77-114 37-87 (107)
124 1k78_A Paired box protein PAX5 21.5 1.3E+02 0.0043 24.1 5.1 68 14-86 30-107 (149)
125 2p7v_B Sigma-70, RNA polymeras 21.2 64 0.0022 22.5 2.8 28 85-113 24-51 (68)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.7e-41 Score=298.73 Aligned_cols=150 Identities=25% Similarity=0.489 Sum_probs=105.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-cc
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGN-KW 89 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-~W 89 (352)
.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCchhhhhHHHHHHHHHhhhcCCCccHHHHHhhcCCCCccccCChH
Q 035629 90 SAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSAILRATLCGSSASLLNMSSLLGGSTHQALLNPE 169 (352)
Q Consensus 90 ~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~~~~ldL~~~~~~~~s~l~~~G~~Ws~Is~~L~GRT~~~ikNR~ 169 (352)
..||..|+|||++||++||.++|++.++++.|+++|+..+++++..+ |++|+.||+.|||||+++|||||
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~gRt~~~~knr~ 151 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLPGRTDNAIKNHW 151 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH----------CCCHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999888888877 88999999999999999999999
Q ss_pred Hh
Q 035629 170 LL 171 (352)
Q Consensus 170 l~ 171 (352)
..
T Consensus 152 ~~ 153 (159)
T 1h89_C 152 NS 153 (159)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=3.4e-33 Score=238.76 Aligned_cols=110 Identities=43% Similarity=0.738 Sum_probs=105.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhh
Q 035629 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAI 92 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~I 92 (352)
.||+||+|||++|+.+|.+||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 389999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhhhhhhhhCCCCC
Q 035629 93 AARLPGRTDNEIKNYWNTHIRKRLLRNGIDP 123 (352)
Q Consensus 93 A~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p 123 (352)
|..|+|||+.+|++||+++|++.+..+.++.
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999999999999999998866543
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=2e-33 Score=239.03 Aligned_cols=121 Identities=21% Similarity=0.413 Sum_probs=95.4
Q ss_pred cccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhhhhh
Q 035629 40 LPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118 (352)
Q Consensus 40 IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r 118 (352)
||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|.+||..|+|||++||++||.++|+|.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999994 7999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhHHHHHHHHHhhhcCCCccHHHHHhhcCCCCccccCChHHh
Q 035629 119 NGIDPVTHAPRLDLLDLSAILRATLCGSSASLLNMSSLLGGSTHQALLNPELL 171 (352)
Q Consensus 119 ~~~~p~e~~~~ldL~~~~~~~~s~l~~~G~~Ws~Is~~L~GRT~~~ikNR~l~ 171 (352)
+.|+++|+..++.++..+ |++|+.||..|||||+++|||||..
T Consensus 80 ~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLPGRTDNAVKNHWNS 122 (128)
T ss_dssp SCCCHHHHHHHHHHHHHH----------CSCHHHHGGGSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHH----------CcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 999999999888888877 8899999999999999999999954
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=1.4e-32 Score=225.94 Aligned_cols=105 Identities=48% Similarity=0.916 Sum_probs=99.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCcch
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWS 90 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~ 90 (352)
++++|+||+|||++|+.+|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHhhhhhh
Q 035629 91 AIAARLPGRTDNEIKNYWNTHIRKRL 116 (352)
Q Consensus 91 ~IA~~lpgRt~~qcr~RW~~~L~~~l 116 (352)
.||..|||||+.+|++||+.++++.+
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999987653
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.1e-32 Score=232.77 Aligned_cols=113 Identities=44% Similarity=0.837 Sum_probs=103.0
Q ss_pred CCCCcCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHH
Q 035629 2 GRAPCCDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQL 81 (352)
Q Consensus 2 gR~~~~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~l 81 (352)
.||....+|++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||++|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 47777889999999999999999999999999889999999998 99999999999999999999999999999999999
Q ss_pred HHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 82 HSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 82 v~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
|.+||.+|..||..|||||+.+|++||+.++++.
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988765
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=4.3e-32 Score=224.38 Aligned_cols=104 Identities=33% Similarity=0.550 Sum_probs=100.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhc
Q 035629 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIA 93 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA 93 (352)
||+||+|||++|+.+|.+||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||.+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhhhhh
Q 035629 94 ARLPGRTDNEIKNYWNTHIRKRLLR 118 (352)
Q Consensus 94 ~~lpgRt~~qcr~RW~~~L~~~l~r 118 (352)
..|||||+.+|++||..++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.8e-31 Score=226.86 Aligned_cols=106 Identities=37% Similarity=0.658 Sum_probs=101.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGN 87 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~ 87 (352)
.+++.+||+||+|||++|+.+|.+||. +|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999996 9999999998 99999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 88 KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 88 ~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
+|.+||..|+|||+.+|++||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888654
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=7.1e-30 Score=224.51 Aligned_cols=113 Identities=45% Similarity=0.833 Sum_probs=106.0
Q ss_pred CCCcCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHH
Q 035629 3 RAPCCDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLH 82 (352)
Q Consensus 3 R~~~~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv 82 (352)
||....+|++++|+||+|||++|+.+|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||++|+++|
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 4455678999999999999999999999999878999999998 999999999999999999999999999999999999
Q ss_pred HHhCCcchhhcccCCCCCHHHHHHHHHHhhhhhh
Q 035629 83 SILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116 (352)
Q Consensus 83 ~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l 116 (352)
.+||.+|..||+.|||||+.+|++||+.++++++
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999887653
No 9
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=1.7e-26 Score=196.13 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=98.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCchhhhhHHHHHHHHHh
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSAILRA 141 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~~~~ldL~~~~~~~~s 141 (352)
.+..++|+||+|||++|+++|.+||.+|..||..|+||+++||++||.++|++.++++.|+++|+..+++++..+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~----- 80 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY----- 80 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH-----
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH-----
Confidence 456789999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhcCCCccHHHHHhhcCCCCccccCChHHhhhhccccCc
Q 035629 142 TLCGSSASLLNMSSLLGGSTHQALLNPELLRLASTLLSL 180 (352)
Q Consensus 142 ~l~~~G~~Ws~Is~~L~GRT~~~ikNR~l~rl~~~~~~~ 180 (352)
|.+|+.||..|||||+++|||||..-+.+.+++.
T Consensus 81 -----G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 81 -----GRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQ 114 (126)
T ss_dssp -----CSCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC--
T ss_pred -----CcCHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 8899999999999999999999965555544443
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.92 E-value=2.2e-26 Score=188.93 Aligned_cols=98 Identities=21% Similarity=0.378 Sum_probs=92.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCchhhhhHHHHHHHHHhh
Q 035629 64 DIKRGRFSFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSAILRAT 142 (352)
Q Consensus 64 ~lkkg~WT~EEDe~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~~~~ldL~~~~~~~~s~ 142 (352)
++++|+||+|||++|+++|.+||. +|..||..|+|||++||++||.++|+|.++++.|+++|+..++.++..+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~------ 74 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL------ 74 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH------
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh------
Confidence 478999999999999999999995 7999999999999999999999999999999999999999988888877
Q ss_pred hcCCCccHHHHHhhcCCCCccccCChHHh
Q 035629 143 LCGSSASLLNMSSLLGGSTHQALLNPELL 171 (352)
Q Consensus 143 l~~~G~~Ws~Is~~L~GRT~~~ikNR~l~ 171 (352)
|++|+.||..|||||+++|||||..
T Consensus 75 ----G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 75 ----GNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp ----SSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 8899999999999999999999954
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.92 E-value=5.8e-26 Score=187.57 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCchhhhhHHHHHHHHHhhhcC
Q 035629 67 RGRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSAILRATLCG 145 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~~~~ldL~~~~~~~~s~l~~ 145 (352)
||+||+|||++|+++|.+|| .+|..||..|++||++||++||.++|+|.++++.|+++|+..++.++..+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~--------- 71 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY--------- 71 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHT---------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHh---------
Confidence 68999999999999999999 58999999999999999999999999999999999999999988888887
Q ss_pred CCccHHHHHhhcCCCCccccCChHH
Q 035629 146 SSASLLNMSSLLGGSTHQALLNPEL 170 (352)
Q Consensus 146 ~G~~Ws~Is~~L~GRT~~~ikNR~l 170 (352)
|++|+.||..|||||+++|||||.
T Consensus 72 -G~~W~~Ia~~l~gRt~~~~k~rw~ 95 (107)
T 2k9n_A 72 -GPKWNKISKFLKNRSDNNIRNRWM 95 (107)
T ss_dssp -CSCHHHHHHHHSSSCHHHHHHHHH
T ss_pred -CcCHHHHHHHCCCCCHHHHHHHHH
Confidence 889999999999999999999994
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.91 E-value=1.6e-25 Score=191.15 Aligned_cols=99 Identities=18% Similarity=0.328 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCchhhhhHHHHHHHHHhhhcC
Q 035629 67 RGRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDLLDLSAILRATLCG 145 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~~~~ldL~~~~~~~~s~l~~ 145 (352)
||+||+|||++|+++|..|| .+|..||..|+||++.||++||.++|++.++++.|+++|+..++.++..+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~--------- 72 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKL--------- 72 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHS---------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHH---------
Confidence 79999999999999999999 78999999999999999999999999999999999999999999988887
Q ss_pred CCccHHHHHhhcCCCCccccCChHHhhhhc
Q 035629 146 SSASLLNMSSLLGGSTHQALLNPELLRLAS 175 (352)
Q Consensus 146 ~G~~Ws~Is~~L~GRT~~~ikNR~l~rl~~ 175 (352)
|++|+.||..|||||+++|+|||...+.+
T Consensus 73 -G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 73 -GSKWSVIAKLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp -CSCHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred -CcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999554444
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-21 Score=148.57 Aligned_cols=67 Identities=25% Similarity=0.524 Sum_probs=64.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHH
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEE 75 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED 75 (352)
..|++++|+||+|||++|+.+|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45889999999999999999999999889999999999 99999999999999999999999999998
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=136.68 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=62.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCc
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTH 126 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~ 126 (352)
.+.+++++||+|||++|+++|.+|| ++|.+||..|++||++|||+||.++|+|.++++.|+++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999998886
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=125.08 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=57.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCC
Q 035629 60 YLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNG 120 (352)
Q Consensus 60 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~ 120 (352)
+|+|.+++++||+|||++|+++|.+||.+|.+||. ++|||++|||+||.++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 68999999999999999999999999999999999 8899999999999999999998854
No 16
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=1.5e-17 Score=153.92 Aligned_cols=106 Identities=17% Similarity=0.289 Sum_probs=91.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccccccccccccccccCCCCC-----------------
Q 035629 9 KNGLKKGPWTPEEDHKLISYIQLHGPGN-----WRNLPKNAGLQRCGKSCRLRWTNYLRPDIK----------------- 66 (352)
Q Consensus 9 kp~lkkg~WT~EED~~L~~~V~k~g~~~-----W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lk----------------- 66 (352)
.+.++|++||+|||++|+++|.++|... |.+||+.|+ |||+.||+.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3578999999999999999999998542 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 035629 67 ------------RGRFSFEEEETIIQLHSI-L--------------------------------GN-------------- 87 (352)
Q Consensus 67 ------------kg~WT~EEDe~Ll~lv~~-~--------------------------------G~-------------- 87 (352)
|.+||.|||-.|...+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999877 1 11
Q ss_pred -----------cchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 88 -----------KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 88 -----------~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
.|..||+.+|+||..+.|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999888554
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=128.56 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=46.4
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 035629 54 RLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH 111 (352)
Q Consensus 54 r~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~ 111 (352)
--||.++|+|++++++||+|||++|+++|.+||++|++||+.| |||+++||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 99999999999753
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=2.5e-17 Score=122.22 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhhhh
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLL 117 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~ 117 (352)
.|.+++++||+|||++|+++|.+|| ++|.+||..|++||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999998763
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=7.1e-17 Score=124.24 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCc
Q 035629 61 LRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTH 126 (352)
Q Consensus 61 L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p~e~ 126 (352)
.+|.+++++||+|||++|+++|.+||.+|..||..|+|||+.||++||++++++.++. ++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5788999999999999999999999999999999999999999999999999999877 7676654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=6.8e-17 Score=116.49 Aligned_cols=50 Identities=30% Similarity=0.587 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 035629 65 IKRGRFSFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 65 lkkg~WT~EEDe~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~RW~~~L~~ 114 (352)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 999999999999999999999999987
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=7.8e-17 Score=116.27 Aligned_cols=50 Identities=30% Similarity=0.694 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHhhhh
Q 035629 65 IKRGRFSFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 65 lkkg~WT~EEDe~Ll~lv~~~G~-~W~~IA~~lpgRt~~qcr~RW~~~L~~ 114 (352)
+++++||+|||++|+++|.+||. +|.+||..|+|||++|||+||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999995 799999999999999999999999986
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.65 E-value=2.3e-17 Score=139.06 Aligned_cols=83 Identities=17% Similarity=0.374 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CccccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNA----GLQRCGKSCRLRWTNYLR-----PDIKRG-RFSFEEEET 77 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L~-----p~lkkg-~WT~EEDe~ 77 (352)
.++..++++||+|||+.|+++|.+||.++|..|++.+ + +||+.+|++||+++++ |.+++| +|++||+++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3467899999999999999999999988999999985 5 9999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCcchh
Q 035629 78 IIQLHSILGNKWSA 91 (352)
Q Consensus 78 Ll~lv~~~G~~W~~ 91 (352)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=1.7e-16 Score=121.03 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=56.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhhhhhCCC
Q 035629 61 LRPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRLLRNGI 121 (352)
Q Consensus 61 L~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~RW~~~L~~~l~r~~~ 121 (352)
..+..++++||+|||++|+++|.+|| ++|..||..|+ +||+.||++||.++|++.+.++..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45667899999999999999999999 79999999999 999999999999999999988553
No 24
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.64 E-value=1.2e-16 Score=147.87 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHhhhhhhh-------------------
Q 035629 63 PDIKRGRFSFEEEETIIQLHSILGNK------WSAIAARLPGRTDNEIKNYWNTHIRKRLL------------------- 117 (352)
Q Consensus 63 p~lkkg~WT~EEDe~Ll~lv~~~G~~------W~~IA~~lpgRt~~qcr~RW~~~L~~~l~------------------- 117 (352)
+.+++++||+|||++|+++|.+||++ |.+||+.|+|||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 35678999999999999999999964 99999999999999999999999999996
Q ss_pred ----------hCCCCCCCchhhhhHHHH--HHHHH-----------------------hhhcCC----------------
Q 035629 118 ----------RNGIDPVTHAPRLDLLDL--SAILR-----------------------ATLCGS---------------- 146 (352)
Q Consensus 118 ----------r~~~~p~e~~~~ldL~~~--~~~~~-----------------------s~l~~~---------------- 146 (352)
+..|+.+++-.+...+.. +.... .++.+.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 677888888777776655 10000 000000
Q ss_pred ---Cc----cHHHHHhhcCCCCccccCChHHhhhhc
Q 035629 147 ---SA----SLLNMSSLLGGSTHQALLNPELLRLAS 175 (352)
Q Consensus 147 ---G~----~Ws~Is~~L~GRT~~~ikNR~l~rl~~ 175 (352)
|+ .|..|+..+|+||.+.+|+||...+..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 22 799999999999999999999665544
No 25
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=7.6e-17 Score=119.64 Aligned_cols=57 Identities=26% Similarity=0.535 Sum_probs=54.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCC
Q 035629 9 KNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIK 66 (352)
Q Consensus 9 kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lk 66 (352)
.|++++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999889999999998 99999999999999999875
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.61 E-value=1.8e-16 Score=133.81 Aligned_cols=78 Identities=19% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Ccccccccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 035629 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNA----GLQRCGKSCRLRWTNYL-----RPDIKRGRFSFEE-EETII 79 (352)
Q Consensus 10 p~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L-----~p~lkkg~WT~EE-De~Ll 79 (352)
...++++||+|||+.|+++|.+||.++|..|++.+ + +||+.+|++||++++ .|.+++|.|+++| +++|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45689999999999999999999999999999864 5 899999999999998 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 035629 80 QLHSILGNK 88 (352)
Q Consensus 80 ~lv~~~G~~ 88 (352)
+++..||+.
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999964
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=1.7e-16 Score=114.50 Aligned_cols=52 Identities=50% Similarity=0.974 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCC
Q 035629 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64 (352)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (352)
++||+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999878999999998 999999999999999984
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=7e-16 Score=116.41 Aligned_cols=52 Identities=31% Similarity=0.507 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhhhh
Q 035629 65 IKRGRFSFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRL 116 (352)
Q Consensus 65 lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~RW~~~L~~~l 116 (352)
.+|++||+|||++|+++|.+|| ++|.+||+.++ +||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 69999999865 9999999999999998765
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=7.6e-16 Score=114.48 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
.+.+.+++||+|||++|+++|.+|| ++|.+||..|++||++|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3578899999999999999999999 89999999999999999999999998653
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.1e-15 Score=110.80 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHhhhh
Q 035629 66 KRGRFSFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lp--gRt~~qcr~RW~~~L~~ 114 (352)
++++||+|||++|+++|.+|| ++|..||..|+ +||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 79999999999 99999999999999863
No 31
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=2.2e-16 Score=113.85 Aligned_cols=52 Identities=33% Similarity=0.725 Sum_probs=48.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCC
Q 035629 12 LKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64 (352)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (352)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999984
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=117.46 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CcchhhcccCCCCCHHHHHHHHHHhhhhhhhhCCCCC
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG------NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDP 123 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G------~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r~~~~p 123 (352)
+|.+.+++||+|||++|+++|.+|| .+|.+||..|++||++||++||.++|.+.++.+...|
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVS 70 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5788999999999999999999999 6899999999999999999999999999887765433
No 33
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=7.3e-16 Score=117.54 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=59.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCc-cccccccccccccccCCCCCCCCCC
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGL-QRCGKSCRLRWTNYLRPDIKRGRFS 71 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~-~Rt~~qCr~Rw~~~L~p~lkkg~WT 71 (352)
.++..++++||+|||++|+.+|.+||.++|..||+.|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 357789999999999999999999998899999999975 8999999999999999999988754
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=4.6e-15 Score=109.62 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHhh
Q 035629 63 PDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARLP-GRTDNEIKNYWNTHI 112 (352)
Q Consensus 63 p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lp-gRt~~qcr~RW~~~L 112 (352)
..+.+++||+|||++|+++|.+|| ++|.+||+.|+ +||++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999999 89999999999 999999999999875
No 35
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.1e-15 Score=112.13 Aligned_cols=55 Identities=18% Similarity=0.476 Sum_probs=51.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCC
Q 035629 9 KNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPD 64 (352)
Q Consensus 9 kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 64 (352)
.+.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3689999999999999999999999889999999999 999999999999999865
No 36
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.50 E-value=5.4e-15 Score=124.62 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=65.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccC----CCCCHHHHHHHHHHhhh-----hhhhhCCCCCCCchhhh
Q 035629 61 LRPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARL----PGRTDNEIKNYWNTHIR-----KRLLRNGIDPVTHAPRL 130 (352)
Q Consensus 61 L~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~l----pgRt~~qcr~RW~~~L~-----~~l~r~~~~p~e~~~~l 130 (352)
+.+..++++||.|||+.|+++|.+|| ++|..|+..+ ++||+.+|++||+++++ +.++++ + +++++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-~-~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-E-PVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-S-CCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-C-CCCHHHHH
Confidence 55677899999999999999999999 5999999984 89999999999999998 777764 2 44444444
Q ss_pred hHHHHHHHHHhhhcCCCccHHH
Q 035629 131 DLLDLSAILRATLCGSSASLLN 152 (352)
Q Consensus 131 dL~~~~~~~~s~l~~~G~~Ws~ 152 (352)
.++.++... |++|+.
T Consensus 89 rv~~~h~~~-------gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYW-------SQQQGK 103 (121)
T ss_dssp HHHHHHHHH-------HHHHCC
T ss_pred HHHHHHHHH-------ccchhc
Confidence 444444444 667765
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.5e-15 Score=113.42 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=49.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC-ccccccccccccccccCCCCC
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG-LQRCGKSCRLRWTNYLRPDIK 66 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~-~~Rt~~qCr~Rw~~~L~p~lk 66 (352)
..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.+++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45899999999999999999999999999999754 289999999999999988763
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2e-15 Score=114.12 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=54.2
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCC
Q 035629 7 CDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68 (352)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg 68 (352)
+.+|.+++++||+|||++|+.+|..+|. +|.+||+ ++ ||++.||+.||.++|++.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 4679999999999999999999999995 9999999 77 8999999999999999876654
No 39
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.1e-15 Score=114.03 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=56.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCccccccccccccccccCCCCCCCCC
Q 035629 9 KNGLKKGPWTPEEDHKLISYIQLHGP-----GNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRF 70 (352)
Q Consensus 9 kp~lkkg~WT~EED~~L~~~V~k~g~-----~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~W 70 (352)
+|++++++||+|||++|+++|.+||. ++|..||+.|+ +||+.||+.||.++|.+.+++|..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999996 78999999999 999999999999999988777643
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.45 E-value=7.8e-14 Score=117.71 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccC----CCCCHHHHHHHHHHhh-----hhhhhhCCCCCCC-chhhhh
Q 035629 63 PDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARL----PGRTDNEIKNYWNTHI-----RKRLLRNGIDPVT-HAPRLD 131 (352)
Q Consensus 63 p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~l----pgRt~~qcr~RW~~~L-----~~~l~r~~~~p~e-~~~~ld 131 (352)
...++++||.|||+.|+++|++|| ++|.+|+..+ ++||+.+|++||.+++ .+.++++.+.|.+ ...+++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 345789999999999999999999 5999999864 8999999999999999 5778876665555 344444
Q ss_pred HHHHH
Q 035629 132 LLDLS 136 (352)
Q Consensus 132 L~~~~ 136 (352)
++..+
T Consensus 107 ~h~~~ 111 (122)
T 2roh_A 107 AQAYW 111 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=8.5e-15 Score=117.24 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=52.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 60 YLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 60 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
.+.|.+++|+||+|||++|+++|.+||.+|..||..|+|||+.||++||+++|+..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998764
No 42
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.9e-14 Score=106.29 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=48.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccccccccc
Q 035629 10 NGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 (352)
Q Consensus 10 p~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (352)
..+.+++||+|||++|+++|.+||.++|..||+.|+.+|++.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999999999999999987899999999998865
No 43
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.43 E-value=1.5e-14 Score=104.70 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=46.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccCc-cccccccccccccccC
Q 035629 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGL-QRCGKSCRLRWTNYLR 62 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~-~Rt~~qCr~Rw~~~L~ 62 (352)
+||+||+|||++|+.+|.+||.++|..||+.|+. +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999998875
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.40 E-value=5.3e-14 Score=108.80 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=48.8
Q ss_pred CCCCcCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCC
Q 035629 2 GRAPCCDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68 (352)
Q Consensus 2 gR~~~~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg 68 (352)
+|+.....|++++|+||+|||++|+++|.+||. .|..||+.| ||++.+|+.||.. |....+.|
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 577888999999999999999999999999994 699999999 7999999999974 55555443
No 45
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.5e-14 Score=109.98 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCC
Q 035629 7 CDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67 (352)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkk 67 (352)
+..|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||..+|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999995 9999999999 999999999999998876655
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=105.89 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 035629 64 DIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH 111 (352)
Q Consensus 64 ~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~ 111 (352)
...+++||+|||++|+++|.+||++|.+||.+|++||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999877
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=5.8e-13 Score=102.96 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhh
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR 113 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~RW~~~L~ 113 (352)
.+...+++||.|||++|++++..|| .+|.+||..|||||+++|++||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999 679999999999999999999988764
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=1.3e-12 Score=107.54 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhcccC----CCCCHHHHHHHHHHhhh-----hhhhhCCCCC
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILG-NKWSAIAARL----PGRTDNEIKNYWNTHIR-----KRLLRNGIDP 123 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~~W~~IA~~l----pgRt~~qcr~RW~~~L~-----~~l~r~~~~p 123 (352)
....++++||+|||++|+++|.+|| ++|..|+..+ ++||+.+|++||+++++ +.++++.-.|
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P 79 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVP 79 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCC
Confidence 3456789999999999999999999 5999999965 89999999999999995 7777764333
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=1.3e-12 Score=103.41 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-Ccchhhccc----CCCCCHHHHHHHHHHhhh-----hhhhhC
Q 035629 68 GRFSFEEEETIIQLHSILG-NKWSAIAAR----LPGRTDNEIKNYWNTHIR-----KRLLRN 119 (352)
Q Consensus 68 g~WT~EEDe~Ll~lv~~~G-~~W~~IA~~----lpgRt~~qcr~RW~~~L~-----~~l~r~ 119 (352)
++||+|||++|+++|.+|| ++|.+|++. |++||+.+|++||+++++ +.++++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~ 62 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC
Confidence 4899999999999999999 599999995 899999999999999995 555554
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=4.8e-13 Score=105.85 Aligned_cols=69 Identities=20% Similarity=0.475 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 035629 15 GPWTPEEDHKLISYIQLHGPGNWRNLPKN----AGLQRCGKSCRLRWTNYL-----RPDIKRG-RFSFEEEETIIQLHSI 84 (352)
Q Consensus 15 g~WT~EED~~L~~~V~k~g~~~W~~IA~~----l~~~Rt~~qCr~Rw~~~L-----~p~lkkg-~WT~EEDe~Ll~lv~~ 84 (352)
++||+|||+.|+++|.+||.++|..|++. |+ +||+.+|++||++++ .|.+++| +..++++++++.|...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 77 999999999999987 5776666 7888888888888764
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=5.5e-13 Score=109.84 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=66.8
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Ccccccccccccccccc-----CCCCCCCCCCHHHHHH
Q 035629 7 CDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNA----GLQRCGKSCRLRWTNYL-----RPDIKRGRFSFEEEET 77 (352)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l----~~~Rt~~qCr~Rw~~~L-----~p~lkkg~WT~EEDe~ 77 (352)
-.++..++++||+|||+.|+++|.+||.++|..|++.+ + +||+.+|++||++++ .|.+++|.-++.|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 34567899999999999999999999999999999966 5 999999999999998 6899999888777655
Q ss_pred -HHHHHHHhC
Q 035629 78 -IIQLHSILG 86 (352)
Q Consensus 78 -Ll~lv~~~G 86 (352)
+++|...+|
T Consensus 85 rv~~~~~~~~ 94 (105)
T 2aje_A 85 RVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777776654
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=102.05 Aligned_cols=54 Identities=19% Similarity=0.436 Sum_probs=50.0
Q ss_pred cCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccccccccc
Q 035629 6 CCDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 (352)
Q Consensus 6 ~~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (352)
.+.+....+++||+|||++|+++|.+|| ++|..||+.|+ +||+.||+.||.++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 4566778899999999999999999999 89999999999 899999999999883
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-12 Score=104.05 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=50.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccCC
Q 035629 7 CDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRP 63 (352)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (352)
...|++++|+||+|||++|+++|..||. +|..||+.|+ |||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4568999999999999999999999995 8999999999 99999999999988764
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=2.1e-12 Score=99.83 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=51.0
Q ss_pred cCCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccccccccccccCC
Q 035629 6 CCDKNGLKKGPWTPEEDHKLISYIQLHG---PGNWRNLPKNAGLQRCGKSCRLRWTNYLRP 63 (352)
Q Consensus 6 ~~~kp~lkkg~WT~EED~~L~~~V~k~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (352)
.-+++...+++||+|||++|+.+|.+|| ..+|..||+.|+ |||..||+.||..++..
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHSS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3467888999999999999999999999 358999999999 99999999999887653
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=4.7e-11 Score=96.31 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhh
Q 035629 66 KRGRFSFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~RW~~~L~~ 114 (352)
.+++||.|||++|++++..|| .+|.+||..|||||+++|++||.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 5799999999999999999999988755
No 56
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=1.1e-10 Score=87.17 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHhhhh
Q 035629 66 KRGRFSFEEEETIIQLHSILGNKWSAIA---ARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G~~W~~IA---~~lpgRt~~qcr~RW~~~L~~ 114 (352)
.+.+||+|||+.|++.|++||.+|..|+ ..+++||.-.+++||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 567999999999999887653
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.3e-10 Score=81.83 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 035629 66 KRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L 112 (352)
..++||+||++++++++..||.+|..||..|++||..+|+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999997653
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=3.3e-10 Score=91.33 Aligned_cols=48 Identities=15% Similarity=0.448 Sum_probs=43.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccccccccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHG---PGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 61 (352)
.+++||+|||++|+.++.+|+ .+.|..||+.|+ |||..+|+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999997 467999999999 999999999998764
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=8.2e-09 Score=79.40 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 64 DIKRGRFSFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 64 ~lkkg~WT~EEDe~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
..+.+.||.|||++|.+++.+|+ .+|.+||..| |||.++|+.||..+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999997 4699999998 999999999998876553
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=82.42 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=58.9
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcccC-----CCCCHHHHHHHHHHhhhhhhhhCC
Q 035629 51 KSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARL-----PGRTDNEIKNYWNTHIRKRLLRNG 120 (352)
Q Consensus 51 ~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~l-----pgRt~~qcr~RW~~~L~~~l~r~~ 120 (352)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||...+++||+.+.+..+...+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567889998876 89999999999999999999999999999 589999999999999888776654
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.68 E-value=3.8e-09 Score=78.78 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCccccccccccccccccCC
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLP---KNAGLQRCGKSCRLRWTNYLRP 63 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA---~~l~~~Rt~~qCr~Rw~~~L~p 63 (352)
..++.+||+|||+.|++.|++||. .|..|+ ..+. +||...+++||+++.+.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 347899999999999999999996 999999 5666 99999999999987653
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.64 E-value=1.7e-08 Score=92.91 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhhhh
Q 035629 66 KRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L~~ 114 (352)
..++||+||++++++++.+||.+|.+||+.|++||..||+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999877643
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.57 E-value=4.2e-08 Score=72.59 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-cchhhcc-cCCCCCHHHHHHHHHHhhh
Q 035629 67 RGRFSFEEEETIIQLHSIL--------GN-KWSAIAA-RLPGRTDNEIKNYWNTHIR 113 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~--------G~-~W~~IA~-~lpgRt~~qcr~RW~~~L~ 113 (352)
|.+||+|||++|+++|.+| |+ -|..+|+ .++++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 42 3999999 7999999999999998874
No 64
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=74.66 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=44.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 60 (352)
++..-..++||+||++++.+++.+|| .+|..||..|+ +|+..+|+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 33344678999999999999999999 69999999999 99999999998643
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=4.5e-08 Score=99.17 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHh
Q 035629 68 GRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH 111 (352)
Q Consensus 68 g~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~ 111 (352)
.+||.||.+++++++.+||.+|.+||..+++||..|||.+|.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999754
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.41 E-value=1.6e-07 Score=72.27 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHhhh
Q 035629 67 RGRFSFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR 113 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G----~~W~~IA~~lpgRt~~qcr~RW~~~L~ 113 (352)
...||.||+++|.+++..|+ ..|.+||..++|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45899999999999999997 359999999999999999999987643
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=3.1e-08 Score=76.14 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=44.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCccccccccccccccccCC
Q 035629 10 NGLKKGPWTPEEDHKLISYIQLHG---PGNWRNLPKNAGLQRCGKSCRLRWTNYLRP 63 (352)
Q Consensus 10 p~lkkg~WT~EED~~L~~~V~k~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (352)
.+.+++.||.|||++|..++.+|+ ++.|..||+.+ ||+..+|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 445678999999999999999997 45799999997 59999999999876543
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.22 E-value=1.8e-07 Score=69.11 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccccccccccccccccC
Q 035629 14 KGPWTPEEDHKLISYIQLH--------GPGNWRNLPK-NAGLQRCGKSCRLRWTNYLR 62 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~--------g~~~W~~IA~-~l~~~Rt~~qCr~Rw~~~L~ 62 (352)
|.+||+|||+.|+++|.++ |..-|+++|+ .++ ++|..+||+||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4446999999 787 9999999999998775
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.21 E-value=2.2e-07 Score=71.53 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccccccccccccC
Q 035629 14 KGPWTPEEDHKLISYIQLHGP---GNWRNLPKNAGLQRCGKSCRLRWTNYLR 62 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (352)
...||.+|+++|..++..|+. ++|..||..++ +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 357999999999999999974 57999999999 8999999999987654
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=5.5e-06 Score=61.77 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHH
Q 035629 62 RPDIKRGRFSFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNT 110 (352)
Q Consensus 62 ~p~lkkg~WT~EEDe~Ll~lv~~~G~~W~~IA~-~lpgRt~~qcr~RW~~ 110 (352)
.|.+....||+||-++..+++.+||.+|..|++ .|++|+..+|...|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 356778899999999999999999999999998 5899999999988864
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.05 E-value=1e-06 Score=81.02 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=45.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccccC
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLR 62 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (352)
....++||+||++++++++.+|| .+|..||+.++ +||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34577899999999999999999 79999999999 9999999999987654
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.91 E-value=2.9e-06 Score=65.09 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----cchhhcccCCCCCHHHHHHHHH
Q 035629 67 RGRFSFEEEETIIQLHSILGN----KWSAIAARLPGRTDNEIKNYWN 109 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G~----~W~~IA~~lpgRt~~qcr~RW~ 109 (352)
.+.||.||+++|..++..|+. .|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999973 6999999999999999999873
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.83 E-value=3.6e-06 Score=64.60 Aligned_cols=44 Identities=11% Similarity=0.355 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccccccccccc
Q 035629 14 KGPWTPEEDHKLISYIQLHGP---GNWRNLPKNAGLQRCGKSCRLRWT 58 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~---~~W~~IA~~l~~~Rt~~qCr~Rw~ 58 (352)
.+.||.||+++|..++.+|.. ..|.+||+.+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 457999999999999999964 48999999999 999999999985
No 74
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.72 E-value=3.5e-05 Score=61.92 Aligned_cols=44 Identities=23% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHH
Q 035629 67 RGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~ 110 (352)
...||+||.++..+++..||.+|..||..|++||..+|...|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998864
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.63 E-value=7.4e-05 Score=71.84 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccc-------cccc----------------------------
Q 035629 15 GPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRL-------RWTN---------------------------- 59 (352)
Q Consensus 15 g~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~-------Rw~~---------------------------- 59 (352)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 899877753 2210
Q ss_pred ---------------ccCCCCCCCCCCHHHHHHHHHHHHHhCC----cchhhcc------------cCCCCCHHHHHHHH
Q 035629 60 ---------------YLRPDIKRGRFSFEEEETIIQLHSILGN----KWSAIAA------------RLPGRTDNEIKNYW 108 (352)
Q Consensus 60 ---------------~L~p~lkkg~WT~EEDe~Ll~lv~~~G~----~W~~IA~------------~lpgRt~~qcr~RW 108 (352)
+..+..++..||.|||..|+-++.+||- .|.+|.. .+..||+.++..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0012224457999999999999999993 5999963 23569999999999
Q ss_pred HHhhh
Q 035629 109 NTHIR 113 (352)
Q Consensus 109 ~~~L~ 113 (352)
..+++
T Consensus 270 ~tLi~ 274 (304)
T 1ofc_X 270 NTLIT 274 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87774
No 76
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.60 E-value=6.8e-05 Score=57.01 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHH
Q 035629 67 RGRFSFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNT 110 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G~~W~~IA~-~lpgRt~~qcr~RW~~ 110 (352)
...||+||-++..+++.+||.+|..|++ .|++|+..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999998873
No 77
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.58 E-value=6.2e-05 Score=59.89 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhhh
Q 035629 69 RFSFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (352)
Q Consensus 69 ~WT~EEDe~Ll~lv~~~G~---~W~~IA~~lpgRt~~qcr~RW~~~L~~ 114 (352)
.||.|||..|+....+-|. .|..||..|.+|+..|+++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999995 699999999999999999999887743
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=3.2e-05 Score=57.62 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccccccccc
Q 035629 8 DKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPK-NAGLQRCGKSCRLRWT 58 (352)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~-~l~~~Rt~~qCr~Rw~ 58 (352)
-.|.+....||+||-++..+.+.+|| .+|..|++ .++ .|+..+|...|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHh
Confidence 35788899999999999999999999 59999998 588 999999987764
No 79
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.49 E-value=2.6e-05 Score=58.90 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHhhh
Q 035629 69 RFSFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIR 113 (352)
Q Consensus 69 ~WT~EEDe~Ll~lv~~~G~---~W~~IA~~lpgRt~~qcr~RW~~~L~ 113 (352)
.||.|||..|+..+.+-|. .|..||..| +|+..|+.+||..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999987653
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.31 E-value=0.00042 Score=55.54 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcchhhcccCC-----CCCHHHHHHHHHHhhhhhhhhC
Q 035629 67 RGRFSFEEEETIIQLHSILGNKWSAIAARLP-----GRTDNEIKNYWNTHIRKRLLRN 119 (352)
Q Consensus 67 kg~WT~EEDe~Ll~lv~~~G~~W~~IA~~lp-----gRt~~qcr~RW~~~L~~~l~r~ 119 (352)
...||.||...|++|+++|+-+|..|+.+.. .||..+.++||+.+.++-+...
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999873 6999999999999988776554
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.26 E-value=0.00021 Score=55.96 Aligned_cols=50 Identities=12% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CcchhhcccCC----CCCHHHHHHHHHHhhhhh
Q 035629 66 KRGRFSFEEEETIIQLHSILG----------NKWSAIAARLP----GRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 66 kkg~WT~EEDe~Ll~lv~~~G----------~~W~~IA~~lp----gRt~~qcr~RW~~~L~~~ 115 (352)
+...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999998642 14999999873 699999999998877653
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.01 E-value=0.00014 Score=58.45 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccccccccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG----LQRCGKSCRLRWTNYL 61 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L 61 (352)
..++||.||+..|++++.+|+ ..|..|+..+. .+|+..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999 69999999983 2799999999997654
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.99 E-value=0.0002 Score=72.57 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=43.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 60 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 60 (352)
.....+||.||.+++++++.+|| .+|..||+.++ .|+..||+.+|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34568899999999999999999 69999999999 99999999988754
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.85 E-value=0.00087 Score=60.31 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=30.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhC--CCCccccccc--cCccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHG--PGNWRNLPKN--AGLQRCGKSCR 54 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g--~~~W~~IA~~--l~~~Rt~~qCr 54 (352)
....||..|-..|+.++.+|| .+.|..|+.. |. +|+...+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~ 50 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLR 50 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHH
Confidence 556799999999999999999 5789999753 44 56654443
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.72 E-value=0.00042 Score=55.56 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccc
Q 035629 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWT 58 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~ 58 (352)
...||+||.+++.+.+..|| .+|..||+.|+ +|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 35799999999999999999 69999999998 999999988664
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.68 E-value=0.00048 Score=52.28 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=39.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPK-NAGLQRCGKSCRLRWT 58 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~~~W~~IA~-~l~~~Rt~~qCr~Rw~ 58 (352)
....||+||-++..+.+.+|| .+|..|++ .|+ +|+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHH
Confidence 456799999999999999999 59999999 588 999999987664
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.36 E-value=0.00025 Score=55.49 Aligned_cols=49 Identities=20% Similarity=0.521 Sum_probs=39.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccccccccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHGP---------GNWRNLPKNAG---LQRCGKSCRLRWTNYL 61 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~---------~~W~~IA~~l~---~~Rt~~qCr~Rw~~~L 61 (352)
+...||.+|...|+.+...... .-|.+||..|. ..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999876421 26999999863 4799999999998753
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.82 E-value=0.0015 Score=49.35 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=40.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccccccccccccC
Q 035629 14 KGPWTPEEDHKLISYIQLHGP--GNWRNLPKNAGLQRCGKSCRLRWTNYLR 62 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 62 (352)
-..||.|||..|+..+++-|. .-|..||+.| +|++.|+..||+.++.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 346999999999999999984 4799999988 4999999999987654
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.28 E-value=0.004 Score=49.51 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCccccccccCccccccccccccccc
Q 035629 14 KGPWTPEEDHKLISYIQLHGP--GNWRNLPKNAGLQRCGKSCRLRWTNY 60 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 60 (352)
-.-||.|||..|+...++.|. .-|..||+.|+ +|++.|+..|++.+
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 345999999999999999984 47999999998 89999999999763
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.11 E-value=0.04 Score=54.20 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccc-------ccccc---------------------------
Q 035629 15 GPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRL-------RWTNY--------------------------- 60 (352)
Q Consensus 15 g~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~-------Rw~~~--------------------------- 60 (352)
+.||.-+=..++.++.+||-.+-..||..|+++++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998889999999964677766652 11110
Q ss_pred -------------c---CCCC--CCCCCCHHHHHHHHHHHHHhC----Ccchhhccc------------CCCCCHHHHHH
Q 035629 61 -------------L---RPDI--KRGRFSFEEEETIIQLHSILG----NKWSAIAAR------------LPGRTDNEIKN 106 (352)
Q Consensus 61 -------------L---~p~l--kkg~WT~EEDe~Ll~lv~~~G----~~W~~IA~~------------lpgRt~~qcr~ 106 (352)
| .+.. ++..||.+||..|+-++-+|| +.|.+|-.. +..||+..+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0111 344799999999999999999 459999433 24699999999
Q ss_pred HHHHhhhh
Q 035629 107 YWNTHIRK 114 (352)
Q Consensus 107 RW~~~L~~ 114 (352)
|...+++-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.26 E-value=0.077 Score=39.56 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---chhhcccC--CCCCHHHHHHHHHHhh
Q 035629 65 IKRGRFSFEEEETIIQLHSILGNK---WSAIAARL--PGRTDNEIKNYWNTHI 112 (352)
Q Consensus 65 lkkg~WT~EEDe~Ll~lv~~~G~~---W~~IA~~l--pgRt~~qcr~RW~~~L 112 (352)
..+-.||+|+.+..+++|..+|.. +..|.+.| +|.|..+++.+...|.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999954 78898876 6889999998876653
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.24 E-value=0.035 Score=49.64 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=31.1
Q ss_pred CcCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 035629 5 PCCDKNGLKKGPWTPEEDHKLISYIQLHGPGNWRNLPK 42 (352)
Q Consensus 5 ~~~~kp~lkkg~WT~EED~~L~~~V~k~g~~~W~~IA~ 42 (352)
+++.++......||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 34445555556799999999999999999999999865
No 93
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.82 E-value=0.02 Score=56.04 Aligned_cols=15 Identities=33% Similarity=0.054 Sum_probs=6.4
Q ss_pred CCCCHHHHHHHHHHH
Q 035629 15 GPWTPEEDHKLISYI 29 (352)
Q Consensus 15 g~WT~EED~~L~~~V 29 (352)
-+||=+|=..+.+.+
T Consensus 125 ~P~Twdel~~~a~~l 139 (449)
T 3iot_A 125 PPKTWEEIPALDKEL 139 (449)
T ss_dssp CCSBGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555444333333
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.36 E-value=0.02 Score=45.76 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=40.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccccccccccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHGPGNWRNLPKNAG----LQRCGKSCRLRWTNYL 61 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L 61 (352)
+-..||.||...|.+++.+|. ..|..|+.... ..|+..+.+.||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999 69999998764 2688888999887653
No 95
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=92.99 E-value=0.022 Score=55.77 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.6
Q ss_pred CCHHHH
Q 035629 17 WTPEED 22 (352)
Q Consensus 17 WT~EED 22 (352)
|+.++-
T Consensus 183 ~~~~~~ 188 (449)
T 3iot_A 183 VDNAGA 188 (449)
T ss_dssp SSSHHH
T ss_pred cCCHHH
Confidence 444443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.74 E-value=0.11 Score=48.98 Aligned_cols=28 Identities=36% Similarity=0.672 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 035629 15 GPWTPEEDHKLISYIQLHGPGNWRNLPK 42 (352)
Q Consensus 15 g~WT~EED~~L~~~V~k~g~~~W~~IA~ 42 (352)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999964
No 97
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.44 E-value=0.52 Score=45.12 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHH
Q 035629 68 GRFSFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYW 108 (352)
Q Consensus 68 g~WT~EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW 108 (352)
+.||..+...++.++.+|| .+|..||..|+|+|...++..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4799999999999999999 7899999999999999996554
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.03 E-value=0.22 Score=47.00 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-Ccchhhcc
Q 035629 68 GRFSFEEEETIIQLHSILG-NKWSAIAA 94 (352)
Q Consensus 68 g~WT~EEDe~Ll~lv~~~G-~~W~~IA~ 94 (352)
..|+.+||..|+..|-+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 99999964
No 99
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=82.25 E-value=0.44 Score=35.44 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=36.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-ccccccccccccc
Q 035629 11 GLKKGPWTPEEDHKLISYIQLHGPGN---WRNLPKNAGL-QRCGKSCRLRWTN 59 (352)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~g~~~---W~~IA~~l~~-~Rt~~qCr~Rw~~ 59 (352)
...+-.||+|..+..+++|...| .+ +..|.+.|+. |.|..++..|.++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34677899999999999999999 44 5677766653 5677777665544
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.07 E-value=2.4 Score=41.56 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=28.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 035629 13 KKGPWTPEEDHKLISYIQLHGP---GNWRNLPKNA 44 (352)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~g~---~~W~~IA~~l 44 (352)
++..||.+||..|+-++.+||. +.|.+|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4567999999999999999998 8999996654
No 101
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=54.65 E-value=9.6 Score=33.22 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCC
Q 035629 10 NGLKKGPWTPEEDHKLI--------SYIQLHGP 34 (352)
Q Consensus 10 p~lkkg~WT~EED~~L~--------~~V~k~g~ 34 (352)
|.-.+|.||.|+|+.|. .+++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 55678999999999886 57888873
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=50.61 E-value=3 Score=34.46 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCccccccccCccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 035629 35 GNWRNLPKNAGLQRCG----KSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHS 83 (352)
Q Consensus 35 ~~W~~IA~~l~~~Rt~----~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~ 83 (352)
+.|.+||..|+...+. ...+..|.++|.+-- ..+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 4799999999754432 355778888887632 378899888887765
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.82 E-value=7.7 Score=31.46 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
.|..+|.++|+ .|..||..|.--.+..++..|.++|.+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 37778888774 4999999884333788899998888654
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.14 E-value=19 Score=28.41 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC--------cchhhcccCCC-CC---HHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLPG-RT---DNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-Rt---~~qcr~RW~~~L~~~ 115 (352)
.|..+|.+.|+ .|.+||..|.- .+ +...+..|.++|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 36677777764 59999999933 22 467888888888653
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=45.15 E-value=17 Score=29.38 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCC----CHHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLPGR----TDNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgR----t~~qcr~RW~~~L~~~ 115 (352)
+|..+|.++|+ .|..||..|.-- .+...|..|.++|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777888874 599999998322 1567888898888654
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.90 E-value=29 Score=28.28 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHhCC--------cchhhcccCCC-C---CHHHHHHHHHHhhhhh---hhhCCCCCC
Q 035629 77 TIIQLHSILGN--------KWSAIAARLPG-R---TDNEIKNYWNTHIRKR---LLRNGIDPV 124 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-R---t~~qcr~RW~~~L~~~---l~r~~~~p~ 124 (352)
+|..+|.++|+ .|.+||..|.- . .+..+|..|.++|.+- +.++..+|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~ 117 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPP 117 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 36777777774 59999999832 2 2467888899888764 345544443
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.13 E-value=14 Score=30.42 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=28.7
Q ss_pred HHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHhhhhh
Q 035629 78 IIQLHSILGN--------KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (352)
Q Consensus 78 Ll~lv~~~G~--------~W~~IA~~lpgRt~~qcr~RW~~~L~~~ 115 (352)
|..+|.+.|+ .|..||..|.--.+...|..|.++|.+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6666666663 4999999884333889999999998765
No 108
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.61 E-value=22 Score=31.02 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=18.5
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 035629 63 PDIKRGRFSFEEEETII--------QLHSILG 86 (352)
Q Consensus 63 p~lkkg~WT~EEDe~Ll--------~lv~~~G 86 (352)
|....|-||.|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 45678999999999987 4555665
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.43 E-value=25 Score=28.65 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCC----CHHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLPGR----TDNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgR----t~~qcr~RW~~~L~~~ 115 (352)
+|..+|.++|+ .|..||..|.-- .+...|..|.++|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 36777777774 499999988321 1457788888888654
No 110
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.45 E-value=26 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------cchhhcccC--CCC---CHHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARL--PGR---TDNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~l--pgR---t~~qcr~RW~~~L~~~ 115 (352)
.|..+|.++|+ .|.+||..| +.. .+..+|..|.++|.+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888774 599999988 222 2578899999998764
No 111
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=38.19 E-value=24 Score=28.92 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=48.7
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCccccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC----
Q 035629 14 KGPWTPEED--HKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGN---- 87 (352)
Q Consensus 14 kg~WT~EED--~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~lv~~~G~---- 87 (352)
+..|.+.+. +.|..+....|. ....++. ++ ||... + -+|..+|.++|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~lD-L----------------------~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCELD-L----------------------ACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEECC-H----------------------HHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEecc-H----------------------HHHHHHHHHcCcHHHh
Confidence 456887764 456667777773 4444432 22 23221 1 137778888875
Q ss_pred ----cchhhcccC--CCC---CHHHHHHHHHHhhhhhh
Q 035629 88 ----KWSAIAARL--PGR---TDNEIKNYWNTHIRKRL 116 (352)
Q Consensus 88 ----~W~~IA~~l--pgR---t~~qcr~RW~~~L~~~l 116 (352)
.|..||..| +.- .....|..|..+|.+-=
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 499999988 322 24678999999997763
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.72 E-value=5.3 Score=32.43 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCccccccccccccccccCC
Q 035629 24 KLISYIQLHGP-------GNWRNLPKNAGLQRCGKSCRLRWTNYLRP 63 (352)
Q Consensus 24 ~L~~~V~k~g~-------~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 63 (352)
+|..+|.+.|. +.|.+||..|+... +..++..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46667777763 47999999998433 66777777776654
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.20 E-value=18 Score=28.02 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHHHHHhCC--------cchhhcccCCC----CCHHHHHHHHHHhhhh
Q 035629 78 IIQLHSILGN--------KWSAIAARLPG----RTDNEIKNYWNTHIRK 114 (352)
Q Consensus 78 Ll~lv~~~G~--------~W~~IA~~lpg----Rt~~qcr~RW~~~L~~ 114 (352)
|..+|.+.|+ .|.+||..|.- -.+..+|..|.++|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 6777777763 59999998832 1256778888887765
No 114
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=34.89 E-value=7 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCccccccccCccccccccccccccccCCCC-------CCCCCCHHHHHHHH
Q 035629 22 DHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDI-------KRGRFSFEEEETII 79 (352)
Q Consensus 22 D~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~l-------kkg~WT~EEDe~Ll 79 (352)
+.+|.++|..|| |+.+++.+. ..|+. -+|++ +|.+|-.+..|.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 568899999998 999998887 66654 25543 47889888877765
No 115
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=33.28 E-value=9 Score=32.77 Aligned_cols=16 Identities=6% Similarity=0.366 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHHHHHH
Q 035629 68 GRFSFEEEETIIQLHS 83 (352)
Q Consensus 68 g~WT~EEDe~Ll~lv~ 83 (352)
..-|.+|...|.+++.
T Consensus 11 ~~l~d~er~~l~~~~~ 26 (150)
T 1qb3_A 11 RKLTDQERARVLEFQD 26 (150)
T ss_dssp CCCCHHHHHHHGGGGG
T ss_pred CcchHHHHHHHHHHhh
Confidence 3566777777654443
No 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.97 E-value=30 Score=29.10 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------cchhhcccCC--CC---CHHHHHHHHHHhhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLP--GR---TDNEIKNYWNTHIRKR 115 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lp--gR---t~~qcr~RW~~~L~~~ 115 (352)
+|..+|.+.|+ .|.+||..|. .. .+..++..|.++|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 36777777774 4999999882 22 2568899999998764
No 117
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.63 E-value=44 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHhh
Q 035629 70 FSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112 (352)
Q Consensus 70 WT~EEDe~Ll~lv~~~G~~W~~IA~~lpgRt~~qcr~RW~~~L 112 (352)
+++ .+..++.++-..|-.+.+||..+ |-+...++.+....+
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 444 44455556556788999999998 777777776655443
No 118
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.49 E-value=34 Score=28.55 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHhhhhhhhh
Q 035629 73 EEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118 (352)
Q Consensus 73 EEDe~Ll~lv~~~G-~~W~~IA~~lpgRt~~qcr~RW~~~L~~~l~r 118 (352)
+-|.+|+++..+.| -.|.+||+.+ |=+...|+.|+..+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56888888888877 6799999999 899999999998887777655
No 119
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.49 E-value=1.2e+02 Score=24.73 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 035629 15 GPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNY------LRPDIK----RGRFSFEEEETIIQLHSI 84 (352)
Q Consensus 15 g~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~------L~p~lk----kg~WT~EEDe~Ll~lv~~ 84 (352)
.+.|.++-..++.++. .| ....+||+.++ .+...+ .||.+. +.+..+ ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688898888888874 56 47789999887 433333 334332 222211 235788888888888876
Q ss_pred hC
Q 035629 85 LG 86 (352)
Q Consensus 85 ~G 86 (352)
.+
T Consensus 99 ~~ 100 (159)
T 2k27_A 99 NP 100 (159)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 120
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.36 E-value=51 Score=23.42 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHH----hCCcchhhcccCCCCCHHHHHHHHHHhh
Q 035629 70 FSFEEEETIIQLHSI----LGNKWSAIAARLPGRTDNEIKNYWNTHI 112 (352)
Q Consensus 70 WT~EEDe~Ll~lv~~----~G~~W~~IA~~lpgRt~~qcr~RW~~~L 112 (352)
.++.|-+ ++.+.-. .|-.|.+||..+ |-+...++.+....+
T Consensus 11 L~~~er~-il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 11 LSEREAM-VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKAL 55 (73)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3444444 4444443 467899999998 788888877665554
No 121
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=26.77 E-value=14 Score=25.73 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCcccc
Q 035629 304 MSSTPLSSPTPLNSSSTFIN 323 (352)
Q Consensus 304 ~~~tp~~s~~~~~s~~~~~~ 323 (352)
|+.||+|||-..||.|---|
T Consensus 2 ls~TP~SSPrSi~S~SQ~k~ 21 (52)
T 3abd_X 2 LTPTPDSSPRSTSSPSQSKN 21 (52)
T ss_dssp --------------------
T ss_pred CcCCCCCCCcccCCHHHhhc
Confidence 46799999988888775444
No 122
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.59 E-value=23 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.6
Q ss_pred cccccccCccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 035629 38 RNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQ 80 (352)
Q Consensus 38 ~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkkg~WT~EEDe~Ll~ 80 (352)
..||..+. |+++.+||..+. + ...||+||++.+++
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 56888888 999999998762 3 33699999998764
No 123
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=22.82 E-value=23 Score=27.99 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHHhCC--------cchhhcccCC--CC---CHHHHHHHHHHhhhh
Q 035629 77 TIIQLHSILGN--------KWSAIAARLP--GR---TDNEIKNYWNTHIRK 114 (352)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lp--gR---t~~qcr~RW~~~L~~ 114 (352)
.|..+|.++|+ .|.+||..|. .. .+..++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 36677777763 5999999883 21 235778888888754
No 124
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.54 E-value=1.3e+02 Score=24.09 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 035629 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNY------LRPDIK----RGRFSFEEEETIIQLHS 83 (352)
Q Consensus 14 kg~WT~EED~~L~~~V~k~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~------L~p~lk----kg~WT~EEDe~Ll~lv~ 83 (352)
....|.|+-..++.++. .| ....+||+.++ .+...+ .||.+. +.+..+ ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689999888888874 45 47788999887 433332 334322 222222 23478888888888887
Q ss_pred HhC
Q 035629 84 ILG 86 (352)
Q Consensus 84 ~~G 86 (352)
+.+
T Consensus 105 ~~~ 107 (149)
T 1k78_A 105 QNP 107 (149)
T ss_dssp HCT
T ss_pred hCc
Confidence 643
No 125
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.23 E-value=64 Score=22.50 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred hCCcchhhcccCCCCCHHHHHHHHHHhhh
Q 035629 85 LGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (352)
Q Consensus 85 ~G~~W~~IA~~lpgRt~~qcr~RW~~~L~ 113 (352)
.|-.+.+||..+ |-+...++.+....++
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 467899999998 8888888887765553
Done!