BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035630
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
+KFW TQPV + D + S+ E P + +V+++ Y LP Y W CD+ E+ +E
Sbjct: 2 YKFWYTQPVPKINDEFNESVNE-PFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSE 60
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LLT+NYVEDD+N+FRFNYS
Sbjct: 61 IYTLLTDNYVEDDDNIFRFNYS 82
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
+KFW TQPV + D + S+ E P + +V+++ Y LP Y W CD+ E+ +E
Sbjct: 3 YKFWYTQPVPKINDEFNESVNE-PFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSE 61
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LLT+NYVEDD+N+FRFNYS
Sbjct: 62 IYTLLTDNYVEDDDNIFRFNYS 83
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 45 GNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEM 104
G ++FW+TQPV + ++ +T GP+EP ++QEPY LP + W D+ +
Sbjct: 1 GRSYQFWDTQPVPKLGEVVNT---HGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGV 55
Query: 105 CAEVYNLLTNNYVEDDENMFRFNYS 129
E+Y LL NYVEDD+NMFRF+YS
Sbjct: 56 LKELYTLLNENYVEDDDNMFRFDYS 80
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani
Length = 421
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
H FW TQPV Q +D + + GP++ P ++++ +EPY + + +EW T ++++ +
Sbjct: 12 HAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHA 71
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LL +NYVEDD++MFRFNYS
Sbjct: 72 IYELLRDNYVEDDDSMFRFNYS 93
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|4A2Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A30|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A31|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A32|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A33|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
Length = 438
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
H FW TQPV Q +D + + GP++ P ++++ +EPY + + +EW T ++++ +
Sbjct: 29 HAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHA 88
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LL +NYVEDD++MFRFNYS
Sbjct: 89 IYELLRDNYVEDDDSMFRFNYS 110
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N-
Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And
A Pyrazole Sulphonamide Ligand (Ddd85646)
Length = 438
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
H FW TQPV Q +D + + GP++ P ++++ +EPY + + +EW T ++++ +
Sbjct: 29 HAFWSTQPVPQTEDEDEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHA 88
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LL +NYVEDD++MFRFNYS
Sbjct: 89 IYELLRDNYVEDDDSMFRFNYS 110
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
++FW+TQPV + ++ +T GP+EP ++QEPY LP + W D+ + E
Sbjct: 117 YQFWDTQPVPKLGEVVNT---HGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKE 171
Query: 108 VYNLLTNNYVEDDENMFRFNYS 129
+Y LL NYVEDD+NMFRF+YS
Sbjct: 172 LYTLLNENYVEDDDNMFRFDYS 193
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAE 107
HKFW TQPV KD + + EGPI+ P ++ +P L + +EW + D+D+++ +
Sbjct: 5 HKFWRTQPV---KDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLED 61
Query: 108 VYNLLTNNYVEDDENMFRFNYSK 130
V+ LL NYVED + FRFNY+K
Sbjct: 62 VFVLLNENYVEDRDAGFRFNYTK 84
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 39 QESLALGNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCD 98
QE HKFW TQPV KD + + EGPI+ P ++ +P L + +EW + D
Sbjct: 29 QEQKKAMKDHKFWRTQPV---KDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSID 85
Query: 99 IDSEEMCAEVYNLLTNNYVEDDENMFRFNYSK 130
+D+++ +V+ LL NYVED + FRFNY+K
Sbjct: 86 VDNKKQLEDVFVLLNENYVEDRDAGFRFNYTK 117
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 69 EGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMFRFNY 128
EGPI+ +V +P L + +EW T DID E+Y LL +NYVED + FRF Y
Sbjct: 1 EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKY 60
Query: 129 S 129
S
Sbjct: 61 S 61
>pdb|2NYD|A Chain A, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
pdb|2NYD|B Chain B, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
Length = 370
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 5 NGSTGVPEETQNLMPNEN-APSESDVSLDLLAQKVQESLALGN-RHKFWETQPVGQFKDI 62
N V + Q +P +N P + +S + LAQ+ GN + F+E++ GQFK +
Sbjct: 129 NNQQDVYYKVQTYIPKDNVGPFKDKLSENGLAQE-------GNYEYCFFESEGRGQFKPV 181
Query: 63 GDTSLPEGPIEPPTPISEVKQE 84
G+ + G I+ + EVK E
Sbjct: 182 GEANPTIGQIDKIEDVDEVKIE 203
>pdb|3LNL|A Chain A, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
pdb|3LNL|B Chain B, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
Length = 370
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 5 NGSTGVPEETQNLMPNEN-APSESDVSLDLLAQKVQESLALGN-RHKFWETQPVGQFKDI 62
N V + Q +P +N P + +S + LAQ+ GN + F+E++ GQFK +
Sbjct: 129 NNQQDVYYKVQTYIPKDNVGPFKDKLSENGLAQE-------GNYEYCFFESEGRGQFKPV 181
Query: 63 GDTSLPEGPIEPPTPISEVKQE 84
G+ + G I+ + EVK E
Sbjct: 182 GEANPTIGQIDKIEDVDEVKIE 203
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 21 ENAPSESD-VSLDLLAQKVQESLALGNRHKFWETQPVGQ 58
E P ++D + +DLL +K++E A G + K T P GQ
Sbjct: 147 EGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQ 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,545,964
Number of Sequences: 62578
Number of extensions: 192936
Number of successful extensions: 294
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 25
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)