Query 035630
Match_columns 130
No_of_seqs 112 out of 239
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iic_A Peptide N-myristoyltran 100.0 2.4E-37 8.3E-42 265.9 6.9 83 45-130 2-84 (422)
2 2wuu_A N-myristoyltransferase; 100.0 3.9E-37 1.3E-41 264.4 4.8 87 44-130 8-94 (421)
3 3iu1_A Glycylpeptide N-tetrade 100.0 1.6E-36 5.6E-41 258.3 8.2 80 46-130 2-81 (383)
4 1rxt_A Myristoyl-, glycylpepti 100.0 4.4E-36 1.5E-40 261.8 2.4 82 44-130 113-194 (496)
5 4b14_A Glycylpeptide N-tetrade 100.0 9.7E-34 3.3E-38 241.5 7.2 83 47-130 2-84 (385)
6 1iyk_A Myristoyl-COA:protein N 99.9 5.8E-27 2E-31 200.1 5.9 62 69-130 1-62 (392)
7 2h9z_A Hypothetical protein HP 43.4 18 0.00062 24.0 2.9 22 94-115 58-79 (86)
8 1rwu_A Hypothetical UPF0250 pr 28.3 44 0.0015 23.3 2.9 22 94-115 81-102 (109)
9 3nvo_A Zinc transport protein 26.0 48 0.0016 24.8 3.0 24 89-112 39-62 (264)
10 2ffg_A YKUJ; structural genomi 23.5 23 0.00079 24.3 0.7 21 89-113 59-79 (87)
11 3okg_A Restriction endonucleas 20.6 46 0.0016 25.8 2.0 15 83-97 17-31 (412)
12 3exc_X Uncharacterized protein 20.4 1.2E+02 0.0042 20.1 3.9 24 92-115 5-28 (91)
No 1
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A* 2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Probab=100.00 E-value=2.4e-37 Score=265.88 Aligned_cols=83 Identities=41% Similarity=0.828 Sum_probs=78.5
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCcee
Q 035630 45 GNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMF 124 (130)
Q Consensus 45 ~~~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~F 124 (130)
.++||||+||||||+++.. .++|||++.+++++||+|||+||.||+|++|||+|+++|+|||+||++||||||||||
T Consensus 2 ~~~~kFW~TQPVp~~~e~~---~~~GpI~~~~~~~~v~~ep~~Lp~~FeW~~~Dl~~~~~l~Ely~lL~~nYVEDdd~mF 78 (422)
T 1iic_A 2 MKDHKFWRTQPVKDFDEKV---VEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGF 78 (422)
T ss_dssp CSCCTTGGGSSCCCTTCCC---SSCEESSCCCCGGGSCSSCCCCCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCGGGCE
T ss_pred CCcCceeccccCCCcCCcc---CCCCCcCCCCChhhccCCCCCCCCCcEEEEcCCCCHHHHHHHHHHHHhCcccCCCCce
Confidence 4789999999999999853 3589999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC
Q 035630 125 RFNYSK 130 (130)
Q Consensus 125 RF~YS~ 130 (130)
||+||+
T Consensus 79 RF~YS~ 84 (422)
T 1iic_A 79 RFNYTK 84 (422)
T ss_dssp EECCCH
T ss_pred eeeCCH
Confidence 999994
No 2
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A {Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A* 4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Probab=100.00 E-value=3.9e-37 Score=264.38 Aligned_cols=87 Identities=39% Similarity=0.828 Sum_probs=76.1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCce
Q 035630 44 LGNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENM 123 (130)
Q Consensus 44 ~~~~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~ 123 (130)
..+.|+||+||||||+++....+.++|||++.+++++||+|||+||.||+|++|||+|+++++|||+||++|||||||+|
T Consensus 8 ~~~~hkFW~TQPVp~~~~~~~~~~~~Gpi~~~~~~~~v~~ep~~Lp~~FeW~~~dl~~~~~l~Ely~lL~~nYVEDdd~m 87 (421)
T 2wuu_A 8 SDAAHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHAIYELLRDNYVEDDDSM 87 (421)
T ss_dssp ---CCTTGGGSSSCCSHHHHHSCCSCBCSSCCCCGGGSCSSCCCCCTTEEEECCCTTCHHHHHHHHHHHHHHSCC---CC
T ss_pred cccCccccccCcCCCcCccccccCCCCCcCCCCChhhccCCCCCCCCCcEEEecCCCCHHHHHHHHHHHHhCcccCCCCc
Confidence 45899999999999999855444458999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCC
Q 035630 124 FRFNYSK 130 (130)
Q Consensus 124 FRF~YS~ 130 (130)
|||+||+
T Consensus 88 FRF~YS~ 94 (421)
T 2wuu_A 88 FRFNYSE 94 (421)
T ss_dssp EEECCCH
T ss_pred eeeeCCH
Confidence 9999994
No 3
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase, NMT1, acyltransferase, phosphoprotein, structural genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A*
Probab=100.00 E-value=1.6e-36 Score=258.34 Aligned_cols=80 Identities=44% Similarity=0.918 Sum_probs=75.3
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCceee
Q 035630 46 NRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMFR 125 (130)
Q Consensus 46 ~~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~FR 125 (130)
++||||+||||||+++.. ..+|||++.+ ++||+|||+||+||+|++|||+|+++|+|||+||++|||||||+|||
T Consensus 2 ~~~kFW~TQPV~~~~~~~---~~~gpI~~~~--~~v~~ep~~Lp~gFeW~~~dl~~~~~l~ely~lL~~nYVEDdd~~FR 76 (383)
T 3iu1_A 2 RSYQFWDTQPVPKLGEVV---NTHGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFR 76 (383)
T ss_dssp CCCTTGGGSSSCCTTCCC---CCCBCSSCCC--SSCCCSCCCCCTTEEEEECCTTSHHHHHHHHHHHHHHSCBCTTSCEE
T ss_pred CCCccccCCcCCCCCCcc---CCCCCCCCCh--hhccCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHhccccCCcceEE
Confidence 689999999999998753 3689999877 89999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 035630 126 FNYSK 130 (130)
Q Consensus 126 F~YS~ 130 (130)
|+||+
T Consensus 77 F~YS~ 81 (383)
T 3iu1_A 77 FDYSP 81 (383)
T ss_dssp ECCCH
T ss_pred eeCCH
Confidence 99994
No 4
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Probab=100.00 E-value=4.4e-36 Score=261.77 Aligned_cols=82 Identities=43% Similarity=0.883 Sum_probs=39.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCce
Q 035630 44 LGNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENM 123 (130)
Q Consensus 44 ~~~~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~ 123 (130)
..+.|+||+||||||+++.. ..+|||++.+ ++||+|||+||.||+|++|||+|+++|+|||+||++|||||||+|
T Consensus 113 ~~~~hkFW~TQPVp~~~e~~---~~~GpIe~~~--~~v~~eP~~LP~gFeW~t~Dl~~~~~l~Ely~LL~enYVEDdd~m 187 (496)
T 1rxt_A 113 SKRSYQFWDTQPVPKLGEVV---NTHGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNM 187 (496)
T ss_dssp -----------------------------------------------CCCCCCCCCSSHHHHHHHHHHHHTSSCCCCSSC
T ss_pred cccCcceeccccCCCCCCcc---CCCCCcCCCh--hhccCCCCCCCCCcEEEecCCCCHHHHHHHHHHHHhCcccCCCCc
Confidence 35889999999999999753 3589999765 899999999999999999999999999999999999999999999
Q ss_pred eeeecCC
Q 035630 124 FRFNYSK 130 (130)
Q Consensus 124 FRF~YS~ 130 (130)
|||+||+
T Consensus 188 FRF~YS~ 194 (496)
T 1rxt_A 188 FRFDYSP 194 (496)
T ss_dssp CCBCCCH
T ss_pred eeeeCCH
Confidence 9999994
No 5
>4b14_A Glycylpeptide N-tetradecanoyltransferase; malaria, drug design; HET: NHW 4XB; 1.50A {Plasmodium vivax} PDB: 4b11_A* 4b12_A* 4b13_A* 4b10_A* 4a95_A*
Probab=100.00 E-value=9.7e-34 Score=241.52 Aligned_cols=83 Identities=45% Similarity=0.849 Sum_probs=77.2
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCceeee
Q 035630 47 RHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMFRF 126 (130)
Q Consensus 47 ~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~FRF 126 (130)
+||||+||||+|+++..... .+|||++.+++++||+|||+||+||+|++|||+|+.+++|||+||++|||||+|+||||
T Consensus 2 ~ykFW~tQPV~~~~~~~~~~-~~~~i~~~~~~~~v~~ep~~Lp~~f~W~~~d~~~~~~l~evy~lL~~nYVED~d~~FRf 80 (385)
T 4b14_A 2 DYKFWYTQPVPKINDEFNES-VNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRF 80 (385)
T ss_dssp CCTTGGGSSSCCTTCCCCTT-CEECSSCSCCGGGSCCSCCCCCTTEEEEECCTTSHHHHHHHHHHHHHHSCBCTTSSEEE
T ss_pred CCCCcCCCCcCCcCcccccc-cCCCcCCCCChhhccCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHhhccCCCcceEec
Confidence 69999999999999865433 46899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 035630 127 NYSK 130 (130)
Q Consensus 127 ~YS~ 130 (130)
+||+
T Consensus 81 ~YS~ 84 (385)
T 4b14_A 81 NYSA 84 (385)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 9994
No 6
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB: 1iyl_A* 1nmt_A
Probab=99.93 E-value=5.8e-27 Score=200.10 Aligned_cols=62 Identities=44% Similarity=0.748 Sum_probs=60.6
Q ss_pred CCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCceeeeecCC
Q 035630 69 EGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMFRFNYSK 130 (130)
Q Consensus 69 eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~FRF~YS~ 130 (130)
+|||++.+++++||+|||+||.||+|++|||+|+++++|||+||++||||||||||||+||+
T Consensus 1 ~gpi~~~~~~~~v~~ep~~Lp~~FeW~~~Dl~~~~~l~Ely~lL~~nYVEDdd~mFRF~YS~ 62 (392)
T 1iyk_A 1 EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKYSH 62 (392)
T ss_dssp CBCSSCCCCGGGSCSSCCCCCCSEEEEECCTTSHHHHHHHHHHHHHHSCBCTTSSEEECCCH
T ss_pred CCCcCCCCChHHccCCCCCCCCCcEEEEcCCCCHHHHHHHHHHHHhCcccCCCCceeeeCCH
Confidence 59999999999999999999999999999999999999999999999999999999999994
No 7
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=43.43 E-value=18 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEeccCCCHHHHHHHHHHhhcC
Q 035630 94 WVTCDIDSEEMCAEVYNLLTNN 115 (130)
Q Consensus 94 W~~~Dl~d~~~l~Evy~LL~~n 115 (130)
++++-+++.+|+.++|.-|..|
T Consensus 58 tv~i~a~s~eq~~~iY~~L~~~ 79 (86)
T 2h9z_A 58 NVSMEVSNESERNEIFQKISQL 79 (86)
T ss_dssp EEEEECCSHHHHHHHHHHHTCS
T ss_pred EEEEEECCHHHHHHHHHHHhcC
Confidence 6788889999999999999865
No 8
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=28.25 E-value=44 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.0
Q ss_pred EEeccCCCHHHHHHHHHHhhcC
Q 035630 94 WVTCDIDSEEMCAEVYNLLTNN 115 (130)
Q Consensus 94 W~~~Dl~d~~~l~Evy~LL~~n 115 (130)
++++-+++.+|+.++|.-|..+
T Consensus 81 tv~v~v~S~eQv~aiY~~L~~~ 102 (109)
T 1rwu_A 81 SITINATHIEQVETLYEELGKI 102 (109)
T ss_dssp EEEECCSSHHHHHHHHHHHSCS
T ss_pred EEEEEECCHHHHHHHHHHHhcC
Confidence 5677889999999999999864
No 9
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=26.01 E-value=48 Score=24.83 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=20.4
Q ss_pred CCCceEEeccCCCHHHHHHHHHHh
Q 035630 89 PNLYEWVTCDIDSEEMCAEVYNLL 112 (130)
Q Consensus 89 P~gFeW~~~Dl~d~~~l~Evy~LL 112 (130)
|.+|.|..++--++++++.|.+.+
T Consensus 39 ~~~~~Wi~l~~p~~~e~~~l~~~~ 62 (264)
T 3nvo_A 39 SQHPCWLHLNYTHPDSARWLASTP 62 (264)
T ss_dssp TTSCEEEEEETTSHHHHHHHHHCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcc
Confidence 799999999998888888877654
No 10
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=23.46 E-value=23 Score=24.34 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=18.5
Q ss_pred CCCceEEeccCCCHHHHHHHHHHhh
Q 035630 89 PNLYEWVTCDIDSEEMCAEVYNLLT 113 (130)
Q Consensus 89 P~gFeW~~~Dl~d~~~l~Evy~LL~ 113 (130)
+..|.+.+||| ..-|||+||.
T Consensus 59 ~~~fqFDnIDL----vAIEIydlL~ 79 (87)
T 2ffg_A 59 PNTYPFDNIDM----VSIEIFELLQ 79 (87)
T ss_dssp EEEEEESCHHH----HHHHHHHHHH
T ss_pred ccccccCCccc----HHHHHHHHHh
Confidence 46899999998 8889999996
No 11
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=20.61 E-value=46 Score=25.84 Aligned_cols=15 Identities=40% Similarity=0.972 Sum_probs=13.4
Q ss_pred CCCCCCCCCceEEec
Q 035630 83 QEPYNLPNLYEWVTC 97 (130)
Q Consensus 83 ~eP~~LP~gFeW~~~ 97 (130)
..||.||+|.+|+.+
T Consensus 17 e~Pf~iP~~We~~~L 31 (412)
T 3okg_A 17 EGPYKLPPGWRWVRL 31 (412)
T ss_dssp SCSSCCCTTCEEEEG
T ss_pred cCCccCCCCcEEEEh
Confidence 379999999999988
No 12
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=20.41 E-value=1.2e+02 Score=20.06 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=19.5
Q ss_pred ceEEeccCCCHHHHHHHHHHhhcC
Q 035630 92 YEWVTCDIDSEEMCAEVYNLLTNN 115 (130)
Q Consensus 92 FeW~~~Dl~d~~~l~Evy~LL~~n 115 (130)
|-++.-|+.+++-+..|.++|..+
T Consensus 5 ~vlV~YDI~~~krr~kv~k~l~~y 28 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKLANNLKKL 28 (91)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Confidence 567788888888888899888854
Done!