Query 035630
Match_columns 130
No_of_seqs 112 out of 239
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 07:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iica1 d.108.1.2 (A:34-218) N 100.0 8.5E-35 6.2E-39 225.7 7.0 83 45-130 2-84 (185)
2 d1iyka1 d.108.1.2 (A:60-224) N 99.9 8.1E-29 5.9E-33 189.4 6.4 62 69-130 1-62 (165)
3 d1m7xa2 b.71.1.1 (A:623-728) 1 64.6 0.73 5.3E-05 30.2 0.3 22 89-114 1-22 (106)
4 d2joqa1 d.58.54.2 (A:4-89) Hyp 25.7 19 0.0014 21.8 2.3 22 94-115 58-79 (86)
5 d2bbha1 d.328.1.1 (A:13-244) M 23.9 34 0.0024 23.4 3.6 26 88-113 43-69 (232)
6 d2ffga1 d.317.1.1 (A:2-79) Hyp 23.3 7 0.00051 24.8 -0.3 20 90-113 59-78 (78)
7 d1db3a_ c.2.1.2 (A:) GDP-manno 22.4 23 0.0017 25.6 2.5 34 79-112 44-77 (357)
8 d1xg5a_ c.2.1.2 (A:) Putative 22.2 21 0.0015 25.3 2.1 28 89-116 60-87 (257)
9 d1hdca_ c.2.1.2 (A:) 3-alpha,2 22.0 19 0.0014 25.7 1.9 28 89-116 50-77 (254)
10 d1nffa_ c.2.1.2 (A:) Putative 19.5 23 0.0017 25.1 1.9 27 90-116 52-78 (244)
No 1
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=8.5e-35 Score=225.67 Aligned_cols=83 Identities=41% Similarity=0.837 Sum_probs=78.5
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCcee
Q 035630 45 GNRHKFWETQPVGQFKDIGDTSLPEGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMF 124 (130)
Q Consensus 45 ~~~hkFW~TQPV~q~~~~~~~~~~eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~F 124 (130)
+++|+||+||||+++++. ..++|+|++.+++++|+++||+||+||+|++||++|+.+++|||+||++|||||+|+||
T Consensus 2 ~~~hkFW~tQPV~~~~~~---~~~~G~I~~~~~~~~v~~~p~~Lp~~f~w~~~d~~d~~~l~el~~lL~~nYved~d~~f 78 (185)
T d1iica1 2 MKDHKFWRTQPVKDFDEK---VVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGF 78 (185)
T ss_dssp CSCCTTGGGSSCCCTTCC---CSSCEESSCCCCGGGSCSSCCCCCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCGGGCE
T ss_pred CccCCCcCcCCcCCCCcc---cCCCCccCCCCCHHHcccCCCcCCCCceEEeeccCCHHHHHHHHHHHHhhccccccceE
Confidence 579999999999999875 34689999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC
Q 035630 125 RFNYSK 130 (130)
Q Consensus 125 RF~YS~ 130 (130)
||+||+
T Consensus 79 rf~Ys~ 84 (185)
T d1iica1 79 RFNYTK 84 (185)
T ss_dssp EECCCH
T ss_pred EeecCH
Confidence 999984
No 2
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=99.95 E-value=8.1e-29 Score=189.39 Aligned_cols=62 Identities=44% Similarity=0.748 Sum_probs=60.5
Q ss_pred CCcCCCCCCCCCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHhhcCcccCCCceeeeecCC
Q 035630 69 EGPIEPPTPISEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLLTNNYVEDDENMFRFNYSK 130 (130)
Q Consensus 69 eGpIe~~~~~~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL~~nYVEDdd~~FRF~YS~ 130 (130)
||||++.+++++||++||+||+||+|++||++|+.+++|||+||++|||||+|+||||+||+
T Consensus 1 eGpi~~~~~~~~v~~eP~~Lp~~feW~~~d~~d~~~l~ely~lL~~nYVeDdd~~frf~YS~ 62 (165)
T d1iyka1 1 EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKYSH 62 (165)
T ss_dssp CBCSSCCCCGGGSCSSCCCCCCSEEEEECCTTSHHHHHHHHHHHHHHSCBCTTSSEEECCCH
T ss_pred CCCcCCCCCHhHCcCCCCCCCCCCEEEEecCCCHHHHHHHHHHHHhhcccCccceEEEecCH
Confidence 59999999999999999999999999999999999999999999999999999999999994
No 3
>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]}
Probab=64.58 E-value=0.73 Score=30.23 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=14.7
Q ss_pred CCCceEEeccCCCHHHHHHHHHHhhc
Q 035630 89 PNLYEWVTCDIDSEEMCAEVYNLLTN 114 (130)
Q Consensus 89 P~gFeW~~~Dl~d~~~l~Evy~LL~~ 114 (130)
|+||+|..+|=.+. -||-+++.
T Consensus 1 P~GF~Wi~~~d~~~----sV~af~R~ 22 (106)
T d1m7xa2 1 PYGFEWLVVDDKER----SVLIFVRR 22 (106)
T ss_dssp GGGEEEEEEEETTT----TEEEEEEE
T ss_pred CCCCEEeeCCCCCC----CEEEEEEe
Confidence 78999999973222 15666654
No 4
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}
Probab=25.68 E-value=19 Score=21.85 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.2
Q ss_pred EEeccCCCHHHHHHHHHHhhcC
Q 035630 94 WVTCDIDSEEMCAEVYNLLTNN 115 (130)
Q Consensus 94 W~~~Dl~d~~~l~Evy~LL~~n 115 (130)
.+++-+++++|+.++|.-|..+
T Consensus 58 tv~v~v~s~~ql~~iY~~L~~~ 79 (86)
T d2joqa1 58 NVSMEVSNESERNEIFQKISQL 79 (86)
T ss_dssp EEEEEESSHHHHHHHHHHHTTS
T ss_pred EEEEEECCHHHHHHHHHHHhcC
Confidence 3566679999999999999765
No 5
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.91 E-value=34 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCCCceEEecc-CCCHHHHHHHHHHhh
Q 035630 88 LPNLYEWVTCD-IDSEEMCAEVYNLLT 113 (130)
Q Consensus 88 LP~gFeW~~~D-l~d~~~l~Evy~LL~ 113 (130)
=+.++.|..|. +++.+.++.|.+.+.
T Consensus 43 ~~~~~~Widi~~~~~~e~l~~l~~~f~ 69 (232)
T d2bbha1 43 DSSTPTWINITGIHRTDVVQRVGEFFG 69 (232)
T ss_dssp GCSSCEEEEEECTTCHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHHcC
Confidence 35789999996 889888888877654
No 6
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus subtilis [TaxId: 1423]}
Probab=23.28 E-value=7 Score=24.82 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.3
Q ss_pred CCceEEeccCCCHHHHHHHHHHhh
Q 035630 90 NLYEWVTCDIDSEEMCAEVYNLLT 113 (130)
Q Consensus 90 ~gFeW~~~Dl~d~~~l~Evy~LL~ 113 (130)
..|.+.+||| ..-|||+||.
T Consensus 59 ~~y~FDdIDL----vAIEIydlLq 78 (78)
T d2ffga1 59 NTYPFDNIDM----VSIEIFELLQ 78 (78)
T ss_dssp EEEEESCHHH----HHHHHHHHHH
T ss_pred cccccCcccc----hHHHHHHhhC
Confidence 5699999998 8889999984
No 7
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}
Probab=22.36 E-value=23 Score=25.61 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=19.9
Q ss_pred CCcCCCCCCCCCCceEEeccCCCHHHHHHHHHHh
Q 035630 79 SEVKQEPYNLPNLYEWVTCDIDSEEMCAEVYNLL 112 (130)
Q Consensus 79 ~~V~~eP~~LP~gFeW~~~Dl~d~~~l~Evy~LL 112 (130)
+.+..++......|++..+||+|...++++..-.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (357)
T d1db3a_ 44 DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV 77 (357)
T ss_dssp -----------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc
Confidence 4566677888889999999999999998776543
No 8
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.25 E-value=21 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCceEEeccCCCHHHHHHHHHHhhcCc
Q 035630 89 PNLYEWVTCDIDSEEMCAEVYNLLTNNY 116 (130)
Q Consensus 89 P~gFeW~~~Dl~d~~~l~Evy~LL~~nY 116 (130)
+..+.+..|||+|+++++.+.+.+.++|
T Consensus 60 ~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 60 PGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp SSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999887765
No 9
>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}
Probab=21.96 E-value=19 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.9
Q ss_pred CCCceEEeccCCCHHHHHHHHHHhhcCc
Q 035630 89 PNLYEWVTCDIDSEEMCAEVYNLLTNNY 116 (130)
Q Consensus 89 P~gFeW~~~Dl~d~~~l~Evy~LL~~nY 116 (130)
.....+..||++|+++++++++.+.++|
T Consensus 50 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 50 GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999998887655
No 10
>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.51 E-value=23 Score=25.07 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=22.9
Q ss_pred CCceEEeccCCCHHHHHHHHHHhhcCc
Q 035630 90 NLYEWVTCDIDSEEMCAEVYNLLTNNY 116 (130)
Q Consensus 90 ~gFeW~~~Dl~d~~~l~Evy~LL~~nY 116 (130)
.....+.|||+|+++++++++-..+.|
T Consensus 52 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 52 DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 456788999999999999998887765
Done!