BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035631
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 204/332 (61%), Gaps = 7/332 (2%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
K+L+TG GFIGS+ +++ +PD+E++ +DKL Y S+ NL P + F+KGD+
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVA 64
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+L+ L+ +D ++H AA++HVD S + F ++N+ GT+ LLE+ + RF
Sbjct: 65 DYELVKELV--RKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
+HVSTDEVYG+ S N +L+P++PYSATKA ++MLV+ + R+Y L TR
Sbjct: 123 VHVSTDEVYGDILKGSFTEN---DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCT 179
Query: 194 NVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
N YGP QFPEKLIPK I+ A G ++PI+G G NVR +LY D A +++L +G +
Sbjct: 180 NNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGESREI 239
Query: 254 YNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR-LGWKEKT 312
YN+ +E++ L+V I L + E+ I V+DRP +D RY LD K+ R L W+ K
Sbjct: 240 YNISAGEEKTNLEVVKIILRLMG-KGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKY 298
Query: 313 PWEEGLKLTLEWYKKNPHWWGDVTGALCPHPS 344
++EG+K T++WY KN WW + HP+
Sbjct: 299 TFDEGIKKTIDWYLKNEWWWKPLVDERILHPT 330
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 200/319 (62%), Gaps = 5/319 (1%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG AGFIGS+ + +++Y Y+I+ D L Y +L N+ + PN+ F+KG+I
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQN 86
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
+L+ +++ + I++FAA++HVD S N F + N+ GT LLE K +K +
Sbjct: 87 GELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LV 145
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGNN 194
VSTDEVYG E + L P +PYS++KA A+ + +AY+++Y LP I TR +N
Sbjct: 146 QVSTDEVYGSLGKTGRF--TEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCSN 203
Query: 195 VYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHVY 254
YGP Q+PEKLIP + A++G++LP++G+G NVR +L+ D A DV+LH+G +G VY
Sbjct: 204 NYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVY 263
Query: 255 NVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLGWKEKTP 313
N+G E++ ++V I TL + +K I YV DR +D RY ++ +K K W+ K
Sbjct: 264 NIGGNNEKTNVEVVEQIITLLG-KTKKDIEYVTDRLGHDRRYAINAEKXKNEFDWEPKYT 322
Query: 314 WEEGLKLTLEWYKKNPHWW 332
+E+GL+ T++WY+KN WW
Sbjct: 323 FEQGLQETVQWYEKNEEWW 341
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 15/190 (7%)
Query: 346 ILLTDSCGNDDAFFLHNGYEICGRSRLKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGRL 405
IL+T G + F+H Y + K + + + G L + F G +
Sbjct: 27 ILVTGGAGFIGSNFVH--YXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEI 84
Query: 406 EDKNSLLDDMKRVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKE-KN 464
++ LL+ + + R V+ +VD + + TNV+GT+TL ++ K+ +
Sbjct: 85 QN-GELLEHVIKERDVQVI--VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH 141
Query: 465 VLLMNFATGCIYEYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTF--LSYLEIFVL- 521
+ L+ +T D ++ G ++ P S YS +KA L+Y + + L
Sbjct: 142 IKLVQVST------DEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLP 195
Query: 522 VICIECLINF 531
VI C N+
Sbjct: 196 VIVTRCSNNY 205
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 193/344 (56%), Gaps = 23/344 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KILITG AGFIGS V +IKN D +V +DKL Y +L++L S + F DI
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK----LTGQ 129
+ + + D +MH AA++HVD S F NI GT+ LLE + G+
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 130 VK----RFIHVSTDEVYGETDMESDIGNP-------EASQLLPTNPYSATKAGAEMLVMA 178
K RF H+STDEVYG+ ++ N E + P++PYSA+KA ++ LV A
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
+ R+YGLPTI T +N YGP FPEKLIP IL A++G+ LPI+G G +R +LY D A
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT-----IHYVQDRPFN 292
A +++ G G YN+G E+ LDV IC L ++ P+ T I YV DRP +
Sbjct: 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGH 300
Query: 293 DHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
D RY +D K+ R LGWK +E G++ T+EWY N W +V
Sbjct: 301 DRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNV 344
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 188/342 (54%), Gaps = 21/342 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+KILITG AGFIGS + +I D +V +DKL Y +L +L P S F F K DI
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LT 127
+ + D +MH AA++HVD S F NI GT+ LLEA + LT
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 128 GQVK---RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
K RF H+STDEVYG+ D E + P++PYSA+KA ++ LV A+ R+YG
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT-ETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LPT+ T +N YGP FPEKLIP IL A+ G+ LP++GNG +R +LY D A A +
Sbjct: 180 LPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCV 239
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEK---------TIHYVQDRPFNDH 294
G +G YN+G ER LDV IC L +L P K I +V DRP +D
Sbjct: 240 ATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGHDL 299
Query: 295 RYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
RY +D K+ R LG + +E G++ T++WY N WW V
Sbjct: 300 RYAIDASKIARELGCVPQETFESGMRKTVQWYLANESWWKQV 341
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 190/324 (58%), Gaps = 12/324 (3%)
Query: 14 KILITGAAGFIGSHVTNRLIKN-YPDY---EIVALDKLDYCSSLKNLHPSRASPNFKFLK 69
++L+TG AGFIGSH +L+ YPD E++ LD L Y + NL P A P +F+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
GDI A L+ L G+D I+HFAA++HVD S + FT N+ GT LL+ C +
Sbjct: 62 GDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAG 118
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTIT 189
V R +HVSTDEVYG D S E+S L P +PY+A+KAG++++ AYHR+YGL
Sbjct: 119 VGRVVHVSTDEVYGSIDSGS---WTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 190 TRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGV 249
TR N YGP Q PEKLIP F+ + G LP++G+G+NVR +++ D ++L G
Sbjct: 176 TRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR 235
Query: 250 IGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR-LGW 308
G +Y++G E + ++ + + ++ V DR +D RY LD K++R LG+
Sbjct: 236 AGEIYHIGGGLELTNRELTGILLDSLGAD-WSSVRKVADRKGHDLRYSLDGGKIERELGY 294
Query: 309 KEKTPWEEGLKLTLEWYKKNPHWW 332
+ + + +GL T+ WY++N WW
Sbjct: 295 RPQVSFADGLARTVRWYRENRGWW 318
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 190/324 (58%), Gaps = 12/324 (3%)
Query: 14 KILITGAAGFIGSHVTNRLIKN-YPDY---EIVALDKLDYCSSLKNLHPSRASPNFKFLK 69
++L+TG AGFIGSH +L+ YPD E++ LD L Y + NL P A P +F+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
GDI A L+ L G+D I+HFAA++HVD S + FT N+ GT LL+ C +
Sbjct: 62 GDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAG 118
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTIT 189
V R +HVST++VYG D S E+S L P +PY+A+KAG++++ AYHR+YGL
Sbjct: 119 VGRVVHVSTNQVYGSIDSGS---WTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 190 TRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGV 249
TR N YGP Q PEKLIP F+ + G LP++G+G+NVR +++ D ++L G
Sbjct: 176 TRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR 235
Query: 250 IGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR-LGW 308
G +Y++G E + ++ + + ++ V DR +D RY LD K++R LG+
Sbjct: 236 AGEIYHIGGGLELTNRELTGILLDSLGAD-WSSVRKVADRKGHDLRYSLDGGKIERELGY 294
Query: 309 KEKTPWEEGLKLTLEWYKKNPHWW 332
+ + + +GL T+ WY++N WW
Sbjct: 295 RPQVSFADGLARTVRWYRENRGWW 318
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 183/331 (55%), Gaps = 17/331 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K I++TG AGFIGS+ + + N+PD + LDKL Y + NL + + + GDI
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDI 63
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
A+L++ L D I+H+AA++H DNS + F + N GT+ LLEA + R
Sbjct: 64 ADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--R 119
Query: 133 FIHVSTDEVYGETDMESDI-GNPEA--------SQLLPTNPYSATKAGAEMLVMAYHRSY 183
F HVSTDEVYG+ + D+ G+ E + P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 184 GLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDV 243
G+ + +N YGP Q EK IP+ I + G + ++G G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 244 ILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKL 303
IL +G +G Y +G E++ +V I +P+ +V DR +D RY +D KL
Sbjct: 240 ILTKGRMGETYLIGADGEKNNKEVLELILEKMG-QPKDAYDHVTDRAGHDLRYAIDASKL 298
Query: 304 K-RLGWKEK-TPWEEGLKLTLEWYKKNPHWW 332
+ LGW + T + EGL+ T++WY N WW
Sbjct: 299 RDELGWTPQFTDFSEGLEETIQWYTDNQDWW 329
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 154/320 (48%), Gaps = 32/320 (10%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKG--- 70
+ILITG AGFIG H+ L+ + E+ LD L + + P + KFL+
Sbjct: 9 RILITGGAGFIGGHLARALVAS--GEEVTVLDDL----RVPPMIPPEGT--GKFLEKPVL 60
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
++ DL + LV H A+ V SF ++ +N G H LL C G V
Sbjct: 61 ELEERDLSDVRLV-------YHLASHKSVPRSFKQPLDYLDNVDSGRH-LLALCTSVG-V 111
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTI-T 189
+ + ST EVYG+ D + PE S L P +PY+A+K G EM+ A+ R+ P +
Sbjct: 112 PKVVVGSTCEVYGQADT---LPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGI 168
Query: 190 TRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGV 249
R NVYGP + P+ L+P+ + +LP+ G+G R + Y DV + + +R
Sbjct: 169 VRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANR-P 227
Query: 250 IGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWK 309
+ V N G+ + SV DV I L P + Q RP N+ F D L+
Sbjct: 228 LPSVVNFGSGQSLSVNDV---IRILQATSPAAEVARKQPRP-NEITEFRADTALQTRQIG 283
Query: 310 EKTPW---EEGLKLTLEWYK 326
E++ EEG++LTLEW++
Sbjct: 284 ERSGGIGIEEGIRLTLEWWQ 303
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 27/314 (8%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
I++TG AGFIGSHV ++L ++ EIV +D L SS + A+ + +K D+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESN---EIVVIDNL---SSGNEEFVNEAA---RLVKADLAA 54
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
D+ +YL +G + + H AA V N E NN+ T+ LLEA + G V R +
Sbjct: 55 DDIKDYL---KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIV 110
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGNN 194
ST VYGE + I PE P + Y A+K E L+ +Y ++ + R N
Sbjct: 111 FTSTSTVYGEAKV---IPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 195 VYGPNQFPEKLIPKFIL-LAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
V G + +I FI+ L ++L I GNG +SY+Y +D +A L ++
Sbjct: 168 VIG-RRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226
Query: 254 YNVGTKKERSVLDVAADICTLFKLEPEKTI-----HYVQDRPFNDHRYFLDDQKLKRLGW 308
+N+G++ + V +A +C L P + D P L +KLKRLGW
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPV----MLLSIEKLKRLGW 282
Query: 309 KEKTPWEEGLKLTL 322
K + EE +++ +
Sbjct: 283 KPRYNSEEAVRMAV 296
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 20/339 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 62
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 63 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 113
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 173
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 174 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 233
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 234 VSSPV-NLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 290
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVI 346
W+ P EEGL + +++K + + P P+ I
Sbjct: 291 WEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARI 329
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 369 RSRLKFLIYGKTGWIGGLLGKYCKDKG----IAFEFGTGRLED-------KNSLLDDMKR 417
+ R + LI G G++G L G + F TGR + +N L +
Sbjct: 3 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 62
Query: 418 VRPTHV-----LNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFAT 472
V P ++ + A PN + + ++T++TN +GTL + + K L+ +T
Sbjct: 63 VEPLYIEVDQIYHLASPASPPNYMY---NPIKTLKTNTIGTLNMLGLAKRVGARLLLAST 119
Query: 473 GCIYEYDSMHPQ 484
+Y +HPQ
Sbjct: 120 SEVYGDPEVHPQ 131
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 159/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI ST VYG+ NP+ + P +PY +K E ++
Sbjct: 117 KNFIFSSTATVYGD--------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI S+ VYG+ NP+ + P +PY +K E ++
Sbjct: 117 KNFIFSSSATVYGD--------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 20/331 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L + +E+ +D + +N+ NF+ + D+
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 84
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT L K G R
Sbjct: 85 VEPLYIE-------VDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVG--AR 135
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE AY + G+
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVA 195
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ V L
Sbjct: 196 RIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL-VALXNS 254
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
+ N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 255 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLXLG 312
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGA 338
W+ P EEGL + +++K + + G+
Sbjct: 313 WEPVVPLEEGLNKAIHYFRKELEYQANNQGS 343
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 369 RSRLKFLIYGKTGWIGGLLGKYCKDKG----IAFEFGTGR-------LEDKNSLLDDMKR 417
+ R + LI G G++G L G + F TGR + +N L +
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 84
Query: 418 VRPTHV-----LNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFAT 472
V P ++ + A PN + + ++T++TN +GTL + K L+ +T
Sbjct: 85 VEPLYIEVDQIYHLASPASPPNYXY---NPIKTLKTNTIGTLNXLGLAKRVGARLLLAST 141
Query: 473 GCIYEYDSMHPQ 484
+Y +HPQ
Sbjct: 142 SEVYGDPEVHPQ 153
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI S VYG+ NP+ + P +PY +K E ++
Sbjct: 117 KNFIFSSVATVYGD--------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI S VYG+ NP+ + P +PY +K E ++
Sbjct: 117 KNFIFSSAATVYGD--------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 144/336 (42%), Gaps = 41/336 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
+I++TG AGFIGSH+ ++L++ YE+V +D L S F ++
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVEL--GYEVVVVDNL-----------SSGRREFVNPSAELH 48
Query: 74 CADLMNYLLVSEGI--DTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVK 131
DL +Y GI D + HFAA V S N N+ T +LE + TG V+
Sbjct: 49 VRDLKDYSW-GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VR 106
Query: 132 RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
+ S+ VYG+ D+ I PE P + Y A KA E++ Y R +G+ + R
Sbjct: 107 TVVFASSSTVYGDADV---IPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVR 163
Query: 192 GNNVYGPNQFPEKLIPKFIL-LAMKGQQLPIHGNGSNVRSYLYCADVAE----AFDVILH 246
NV GP + +I FI+ L L + G+G+ +SYLY D E A+
Sbjct: 164 YANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE 222
Query: 247 RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQK---- 302
NVG VLD+A + + L PE I V P D R + D K
Sbjct: 223 MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPE--IRLVPSTP--DGRGWPGDVKYMTL 278
Query: 303 -----LKRLGWKEKTPWEEGLKLTLEWYKKNPHWWG 333
+K GW+ E +K T E K WG
Sbjct: 279 AVTKLMKLTGWRPTMTSAEAVKKTAEDLAK--ELWG 312
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K FI S+ VYG+ + + P + P +PY +K E ++ +A
Sbjct: 117 KNFIFSSSATVYGDQPKIPYVESFPTGT---PQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + L I GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K + H
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGKPVNYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 158/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K FI S VYG+ + + P + P +PY +K E ++ +A
Sbjct: 117 KNFIFSSAATVYGDQPKIPYVESFPTGT---PQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + L I GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K + H
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGKPVNYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 152/322 (47%), Gaps = 24/322 (7%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
++L+TG AGFIGSH+ L+ E+ LD L ++ K + + P F+ D+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLAR--GLEVAVLDNL---ATGKRENVPKGVPFFRV---DLR 53
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+ + + H AAQ V S + N+ G LLEAC+ G V++
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEKL 112
Query: 134 IHVSTD-EVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
+ ST +YGE E + E P +PY+A+KA E + Y +SYGL ++ R
Sbjct: 113 VFASTGGAIYGEVP-EGERAE-ETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRY 170
Query: 193 NNVYGPNQFPE---KLIPKFILLAMKGQQLPIH-----GNGSNVRSYLYCADVAEAFDVI 244
NVYGP Q P ++ F +KG + ++ G+ VR Y+Y DVAEA +
Sbjct: 171 GNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK 304
L + +YNVGT + + +V + PE + RP + R L KL
Sbjct: 231 LFS--LEGIYNVGTGEGHTTREVLMAVAEAAGKAPE--VQPAPPRPGDLERSVLSPLKLM 286
Query: 305 RLGWKEKTPWEEGLKLTLEWYK 326
GW+ K ++EG++LT++ ++
Sbjct: 287 AHGWRPKVGFQEGIRLTVDHFR 308
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI S VYG+ NP+ + P +P+ +K E ++
Sbjct: 117 KNFIFSSAATVYGD--------NPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K FI S+ VYG+ + + P + P +P+ +K E ++ +A
Sbjct: 117 KNFIFSSSATVYGDQPKIPYVESFPTGT---PQSPFGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + L I GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K + H
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGKPVNYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 158/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K FI S VYG+ + + P + P +P+ +K E ++ +A
Sbjct: 117 KNFIFSSAATVYGDQPKIPYVESFPTGT---PQSPFGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + L I GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K + H
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGKPVNYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 19/333 (5%)
Query: 1 MSGEFEPASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSR 60
M G + + LITG AGF+G ++ N L + + E+ + +S N
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQ--NVEV-------FGTSRNN---EA 48
Query: 61 ASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVL 120
PN + + DI + + ++ D I H AA++ V +S+ N + N++GT +
Sbjct: 49 KLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHV 108
Query: 121 LEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
L+A + + R + + + E YG + + E +QL P +PY +KA ML Y
Sbjct: 109 LDAVRDSNLDCRILTIGSSEEYGMI-LPEESPVSEENQLRPMSPYGVSKASVGMLARQYV 167
Query: 181 RSYGLPTITTRGNNVYGPNQ----FPEKLIPKFILLAMKGQQLPIH-GNGSNVRSYLYCA 235
++YG+ I TR N GP Q + + + + M+ Q+ I GN VR +
Sbjct: 168 KAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVR 227
Query: 236 DVAEAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHR 295
D+ +A+ ++ G G VYNV + + DV + + ++ + ++ +Q RP
Sbjct: 228 DIVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPT 287
Query: 296 YFLDDQKLK-RLGWKEKTPWEEGLKLTLEWYKK 327
+++LK GWK + P E+ L L+ Y++
Sbjct: 288 LIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 372 LKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGR---------------LEDKNSLLDDMK 416
++ LI G G++G L + ++ + FGT R + D + +
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEV-FGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 71
Query: 417 RVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFATGCIY 476
++P ++ + A + + W ++ T TNV GTL + D ++ N+ G
Sbjct: 72 DIKPDYIFHLAAKSSVKD-SWL--NKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 128
Query: 477 EYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTFLS 514
EY + P+ S + + P S Y +KA V L+
Sbjct: 129 EYGMILPEESPVSEENQLRP---MSPYGVSKASVGMLA 163
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 54/356 (15%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQL------LPTNPYSATKAGAEMLV-------- 176
K FI S+ VYG+ NP+ + P +PY +K E ++
Sbjct: 117 KNFIFSSSATVYGD--------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP 168
Query: 177 ---MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GS 226
+A R + G+ P P L+P +A+ + L I GN G+
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 227 NVRSYLYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEK 281
VR Y++ D+A+ V + + GV H+YN+G SVLDV F K
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGK 282
Query: 282 TI--HYVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ H+ R + + D K R L W+ +E + T W ++P + D
Sbjct: 283 PVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 27/332 (8%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
+++ G AGF+GS++ RL++ + ++ +D L S+ K P P +F + IT
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNL--LSAEKINVPDH--PAVRFSETSITD 89
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
L+ L + D + H A +S + NN T L E K ++K+ +
Sbjct: 90 DALLASL--QDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVV 147
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTN---PYSATKAGAEMLVMAYHRSYGLPTITTR 191
+ + E + E + N PYS +K E + YH+ + LPT+ R
Sbjct: 148 YSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRAR 207
Query: 192 GNNVYGPNQFP-------------EKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
NVYGP + + P FI A+KG LP+ G R +++ DVA
Sbjct: 208 FQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVA 267
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPF-NDHRYF 297
G G VYN+ + KE S+ D+A I + E + + RP+ N + F
Sbjct: 268 NGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTE--LDRLPKRPWDNSGKRF 325
Query: 298 LDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKN 328
+K +R LG+ ++GL+ T+EW K N
Sbjct: 326 GSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 153/338 (45%), Gaps = 33/338 (9%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-----CSSLKNLHPSRASPN 64
+ PK LITG AGFIGS++ +L+K ++ LD +K L +
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
F F++GDI DL V +G+D ++H AA V S + NI G +L A
Sbjct: 81 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 125 KLTGQVKRFIHVSTDEVYGE----TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
K QV+ F + ++ YG+ +E +IGNP +PY+ TK E+ Y
Sbjct: 139 K-NAQVQSFTYAASSSTYGDHPALPKVEENIGNP-------LSPYAVTKYVNEIYAQVYA 190
Query: 181 RSYGLPTITTRGNNVYGPNQFPE----KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCAD 236
R+YG TI R NV+G Q P +IPK+ +KG + I+G+G R + Y +
Sbjct: 191 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 250
Query: 237 VAEA--FDVILHRGVIGHVYNVGTKKERSVLDVAA---DICTLFKLEPEKTIHYVQDRPF 291
V + + ++YNV ++ +++ D L + +I Y + R
Sbjct: 251 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS- 309
Query: 292 NDHRYFLDD--QKLKRLGWKEKTPWEEGLKLTLEWYKK 327
D R+ D + + L ++ EGL+L++ WY +
Sbjct: 310 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 153/338 (45%), Gaps = 33/338 (9%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-----CSSLKNLHPSRASPN 64
+ PK LITG AGFIGS++ +L+K ++ LD +K L +
Sbjct: 17 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 74
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
F F++GDI DL V +G+D ++H AA V S + NI G +L A
Sbjct: 75 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 132
Query: 125 KLTGQVKRFIHVSTDEVYGE----TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
K QV+ F + ++ YG+ +E +IGNP +PY+ TK E+ Y
Sbjct: 133 K-NAQVQSFTYAASSSTYGDHPALPKVEENIGNP-------LSPYAVTKYVNEIYAQVYA 184
Query: 181 RSYGLPTITTRGNNVYGPNQFPE----KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCAD 236
R+YG TI R NV+G Q P +IPK+ +KG + I+G+G R + Y +
Sbjct: 185 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 244
Query: 237 VAEA--FDVILHRGVIGHVYNVGTKKERSVLDVAA---DICTLFKLEPEKTIHYVQDRPF 291
V + + ++YNV ++ +++ D L + +I Y + R
Sbjct: 245 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS- 303
Query: 292 NDHRYFLDD--QKLKRLGWKEKTPWEEGLKLTLEWYKK 327
D R+ D + + L ++ EGL+L++ WY +
Sbjct: 304 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 341
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 153/338 (45%), Gaps = 33/338 (9%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-----CSSLKNLHPSRASPN 64
+ PK LITG AGFIGS++ +L+K ++ LD +K L +
Sbjct: 36 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 93
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
F F++GDI DL V +G+D ++H AA V S + NI G +L A
Sbjct: 94 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 151
Query: 125 KLTGQVKRFIHVSTDEVYGE----TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
K QV+ F + ++ YG+ +E +IGNP +PY+ TK E+ Y
Sbjct: 152 K-NAQVQSFTYAASSSTYGDHPALPKVEENIGNP-------LSPYAVTKYVNEIYAQVYA 203
Query: 181 RSYGLPTITTRGNNVYGPNQFP----EKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCAD 236
R+YG TI R NV+G Q P +IPK+ +KG + I+G+G R + Y +
Sbjct: 204 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 263
Query: 237 VAEA--FDVILHRGVIGHVYNVGTKKERSVLDVAA---DICTLFKLEPEKTIHYVQDRPF 291
V + + ++YNV ++ +++ D L + +I Y + R
Sbjct: 264 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS- 322
Query: 292 NDHRYFLDD--QKLKRLGWKEKTPWEEGLKLTLEWYKK 327
D R+ D + + L ++ EGL+L++ WY +
Sbjct: 323 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 360
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 148/339 (43%), Gaps = 41/339 (12%)
Query: 11 KPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-----CSSLKNLHPSRASPNF 65
+PK LITG AGFIGS++ L+K D ++V LD +++L + NF
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLK--LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNF 83
Query: 66 KFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK 125
KF++GDI D N G+D ++H AA V S + NI G +L A +
Sbjct: 84 KFIQGDIRNLDDCNN--ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR 141
Query: 126 LTGQVKRFIHVSTDEVYGE----TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHR 181
+V+ F + ++ YG+ +E IG P +PY+ TK E+ + R
Sbjct: 142 -DAKVQSFTYAASSSTYGDHPGLPKVEDTIGKP-------LSPYAVTKYVNELYADVFSR 193
Query: 182 SYGLPTITTRGNNVYGPNQFPE----KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADV 237
YG TI R NV+G Q P +IPK+ ++G + I+G+G R + Y +
Sbjct: 194 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 253
Query: 238 AEAFDVILHRGVIG--HVYNVGTKKERS-------VLDVAADICTLFKLEPEKTIHYVQD 288
+A + G+ VYN+ S + D A+ + EP +D
Sbjct: 254 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREP-----VYRD 308
Query: 289 RPFNDHRYFLDD--QKLKRLGWKEKTPWEEGLKLTLEWY 325
D R+ L D + K LG+ K G+ L + WY
Sbjct: 309 FREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWY 347
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 33/338 (9%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-----CSSLKNLHPSRASPN 64
+ PK LITG AGFIGS++ +L+K ++ LD +K L +
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
F F++GDI DL V +G+D ++H AA V S + NI G +L A
Sbjct: 81 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 125 KLTGQVKRFIHVSTDEVYGE----TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
K QV+ F + ++ YG+ +E +IGNP +PY+ TK E+ Y
Sbjct: 139 K-NAQVQSFTYAASSSTYGDHPALPKVEENIGNP-------LSPYAVTKYVNEIYAQVYA 190
Query: 181 RSYGLPTITTRGNNVYGPNQFP----EKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCAD 236
R+YG TI R NV+G Q P +IPK+ +KG + I+G+G R + Y +
Sbjct: 191 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN 250
Query: 237 VAEA--FDVILHRGVIGHVYNVGTKKERSVLDVAA---DICTLFKLEPEKTIHYVQDRPF 291
V + + ++YNV ++ +++ D L + +I Y + R
Sbjct: 251 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS- 309
Query: 292 NDHRYFLDD--QKLKRLGWKEKTPWEEGLKLTLEWYKK 327
D R D + + L ++ EGL+L++ WY +
Sbjct: 310 GDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 139/327 (42%), Gaps = 45/327 (13%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDY-CSSLKNLHPSRASPNFKFLKGDI 72
+I++TG AGFIGSH+ ++L++ YE+V +D + LH
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVEL--GYEVVVVDIVQRDTGGSAELH--------------- 44
Query: 73 TCADLMNYLLVSEGI--DTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DL +Y GI D + HFAA V S N N+ T +LE + TG V
Sbjct: 45 -VRDLKDYSW-GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 101
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ + S+ VYG+ D+ I PE P + Y A KA E++ Y R +G+ +
Sbjct: 102 RTVVFASSSTVYGDADV---IPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAV 158
Query: 191 RGNNVYGPNQFPEKLIPKFIL-LAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR-- 247
R NV GP + +I FI+ L L + G+G+ +SYLY D EA +
Sbjct: 159 RYANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE 217
Query: 248 --GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQK--- 302
NVG VLD+A + + L PE I V P D R + D K
Sbjct: 218 EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPE--IRLVPSTP--DGRGWPGDVKYMT 273
Query: 303 ------LKRLGWKEKTPWEEGLKLTLE 323
+K GW+ E +K T E
Sbjct: 274 LAVTKLMKLTGWRPTMTSAEAVKKTAE 300
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 149/344 (43%), Gaps = 44/344 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
K+LITG GF+GS++ + + D ++ D L + NLH + NF+F+ GDI
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+ + L+ D+ H A Q + S N N+ GT LLEA +
Sbjct: 61 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 120
Query: 134 IHVSTDEVYGE-------------TDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYH 180
I+ ST++VYG+ T ++ G E++QL +PY +K A+ ++ Y
Sbjct: 121 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 180
Query: 181 RSYGLPTITTRGNNVYGPNQFP---EKLIPKFILLAMK-----GQQLPIHGNGSNVRSYL 232
R +GL T+ R +++YG QF + + F A++ + I GNG VR L
Sbjct: 181 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240
Query: 233 YCADVAEAFDVILHR--GVIGHVYNVG-----TKKERSVLDVAADICTL---FKLEPEKT 282
+ D+ + L + G+ +N+G + + + D C + F P +
Sbjct: 241 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 300
Query: 283 IHYVQDRPFNDHRYFLDDQK--LKRLGWKEKTPWEEGLKLTLEW 324
+D R F+ D K + W K ++G++ +W
Sbjct: 301 ---------SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDW 335
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 143/342 (41%), Gaps = 41/342 (11%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
ILI G AG+IGSH +L+ +V +D +L+ H + KF GD+
Sbjct: 4 ILICGGAGYIGSHAVKKLVDE--GLSVVVVD------NLQTGHEDAITEGAKFYNGDLRD 55
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
+ + E I+ +MHFAA + V S ++ NNN+YG LLE +V +FI
Sbjct: 56 KAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMD-EFKVDKFI 114
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR--- 191
ST YGE D++ E + PTN Y TK E ++ Y ++ L R
Sbjct: 115 FSSTAATYGEVDVDLIT---EETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 192 -----GNNVYGPNQFPEKLIPKFILLAMKGQQLPIH--------GNGSNVRSYLYCADVA 238
N + G + PE + +L GQ+ I +G+ +R Y++ D+
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231
Query: 239 EAFDV---ILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHR 295
A + L G YN+G SV ++ + + E + R + R
Sbjct: 232 AAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEV--APRRAGDPAR 289
Query: 296 YFLDDQKLK-RLGWKEKTPWEEGLKLTLE----WYKKNPHWW 332
QK K +LGW P +K +E W++K P+ +
Sbjct: 290 LVASSQKAKEKLGWD---PRYVNVKTIIEHAWNWHQKQPNGY 328
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 21/267 (7%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRAS--PNFKFLKG 70
+ ILITG AGF+GS++ +N+P ++V LDK + N PS N KG
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG 70
Query: 71 DITCADLMNYL----LVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKL 126
++ AD+ N L L D + H AA + D + N N LLE +
Sbjct: 71 EVIAADINNPLDLRRLEKLHFDYLFHQAAVS--DTTMLNQELVMKTNYQAFLNLLEIAR- 127
Query: 127 TGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLP 186
+ + I+ S+ VYG T + +G E+ P N Y +K + V+++ S
Sbjct: 128 -SKKAKVIYASSAGVYGNTKAPNVVGKNES----PENVYGFSKLCMDEFVLSH--SNDNV 180
Query: 187 TITTRGNNVYGPNQFPEK----LIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFD 242
+ R NVYGP +F ++ ++ + L AM +++ + G +R ++Y DV +A +
Sbjct: 181 QVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA-N 239
Query: 243 VILHRGVIGHVYNVGTKKERSVLDVAA 269
V + VYNVG + RS ++ +
Sbjct: 240 VKAMKAQKSGVYNVGYSQARSYNEIVS 266
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 158/368 (42%), Gaps = 49/368 (13%)
Query: 1 MSGEFEPASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-----DYCSSLKN 55
M+ + + S K +L+TG AG+IGSH LI+N Y+ V D L D + L+
Sbjct: 1 MTAQLQSES-TSKIVLVTGGAGYIGSHTVVELIEN--GYDCVVADNLSNSTYDSVARLEV 57
Query: 56 LHPSRASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIY 115
L + F + D+ + + ID+++HFA V S + +NNI
Sbjct: 58 L----TKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNIL 113
Query: 116 GTHVLLEACKLTGQVKRFIHVSTDEVYGE-TDMESDIGNPEASQLLPTNPYSATKAGAEM 174
GT VLLE + V +F+ S+ VYG+ T + I PE L PTNPY TK E
Sbjct: 114 GTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIEN 172
Query: 175 LVMAYHRS-----------YGLPTITTRGNNVYG--PNQFPEKLIPKFILLAM-KGQQLP 220
++ + S Y P I + + G P P L+P +A+ + ++L
Sbjct: 173 ILNDLYNSDKKSWKFAILRYFNP-IGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLY 231
Query: 221 IHG------NGSNVRSYLYCADVAEAFDVILH-------RGVIGHVYNVGTKKERSVLDV 267
I G +G+ +R Y++ D+A+ L + +N+G+ K +V +V
Sbjct: 232 IFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEV 291
Query: 268 AADICTLFKLE-PEKTIHYVQDRPFND--HRYFLDDQKLKRLGWKEKTPWEEGLKLTLEW 324
C ++ P K V R D + D+ + L W+ + E+ K +W
Sbjct: 292 YHAFCKASGIDLPYK----VTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKW 347
Query: 325 YKKNPHWW 332
+NP +
Sbjct: 348 TTENPFGY 355
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 22/262 (8%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KI +TG GF+G +V IKN + I+ + ++A ++++ D T
Sbjct: 4 KIAVTGGTGFLGQYVVES-IKNDGNTPIILTRSI----------GNKAINDYEYRVSDYT 52
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
DL+N L +D ++H AA S G EF +N I T L +AC +
Sbjct: 53 LEDLINQL---NDVDAVVHLAA---TRGSQGKISEFHDNEIL-TQNLYDAC-YENNISNI 104
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
++ ST Y + E+ + E LP Y +K E + Y R GL R
Sbjct: 105 VYASTISAYSD---ETSLPWNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 194 NVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
++YG N+ I +F A G+QL +H N R +LY D A++ L + +
Sbjct: 162 HLYGFNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGT 221
Query: 254 YNVGTKKERSVLDVAADICTLF 275
+N+G+ + +VA I F
Sbjct: 222 FNIGSGDALTNYEVANTINNAF 243
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 37/343 (10%)
Query: 4 EFEPASYKPK---KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSR 60
E E Y P KI ITGA GFI SH+ RL + + ++A D KN H +
Sbjct: 18 ELEREQYWPSENLKISITGAGGFIASHIARRL--KHEGHYVIASD------WKKNEHMTE 69
Query: 61 ASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTN------NNI 114
+F D+ + N L V+EG+D + + AA G F +N NN
Sbjct: 70 DMFCDEFHLVDLRVME--NCLKVTEGVDHVFNLAADMG-----GMGFIQSNHSVIMYNNT 122
Query: 115 YGTHVLLEACKLTGQVKRFIHVSTDEVYGE-TDMESDIGNPEASQLLPTNP---YSATKA 170
+ ++EA ++ G +KRF + S+ +Y E +E+ + + S P P Y K
Sbjct: 123 MISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKL 181
Query: 171 GAEMLVMAYHRSYGLPTITTRGNNVYGP----NQFPEKLIPKFILLAMKG-QQLPIHGNG 225
E L Y++ +G+ R +N+YGP EK F A + + G+G
Sbjct: 182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 241
Query: 226 SNVRSYLYCADVAEAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHY 285
RS+ + + E + L + N+G+ + S+ ++A + + E + IH+
Sbjct: 242 LQTRSFTFIDECVEGV-LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSF--EEKKLPIHH 298
Query: 286 VQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ R ++ ++LGW +EGL++T W K+
Sbjct: 299 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 341
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 37/343 (10%)
Query: 4 EFEPASYKPK---KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSR 60
E E Y P KI ITGA GFI SH+ RL + + ++A D KN H +
Sbjct: 18 ELEREQYWPSENLKISITGAGGFIASHIARRL--KHEGHYVIASD------WKKNEHMTE 69
Query: 61 ASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTN------NNI 114
+F D+ + N L V+EG+D + + AA G F +N NN
Sbjct: 70 DMFCDEFHLVDLRVME--NCLKVTEGVDHVFNLAADMG-----GMGFIQSNHSVIMYNNT 122
Query: 115 YGTHVLLEACKLTGQVKRFIHVSTDEVYGE-TDMESDIGNPEASQLLPTNP---YSATKA 170
+ ++EA ++ G +KRF + S+ +Y E +E+ + + S P P Y +
Sbjct: 123 MISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERL 181
Query: 171 GAEMLVMAYHRSYGLPTITTRGNNVYGP----NQFPEKLIPKFILLAMKG-QQLPIHGNG 225
E L Y++ +G+ R +N+YGP EK F A + + G+G
Sbjct: 182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 241
Query: 226 SNVRSYLYCADVAEAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHY 285
RS+ + + E + L + N+G+ + S+ ++A + + E + IH+
Sbjct: 242 LQTRSFTFIDECVEGV-LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSF--EEKKLPIHH 298
Query: 286 VQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ R ++ ++LGW +EGL++T W K+
Sbjct: 299 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 341
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 37/343 (10%)
Query: 4 EFEPASYKPK---KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSR 60
E E Y P KI ITGA GFI SH+ RL + + ++A D KN H +
Sbjct: 18 ELEREQYWPSENLKISITGAGGFIASHIARRL--KHEGHYVIASD------WKKNEHMTE 69
Query: 61 ASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTN------NNI 114
+F D+ + N L V+EG+D + + AA G F +N NN
Sbjct: 70 DMFCDEFHLVDLRV--MENCLKVTEGVDHVFNLAADMG-----GMGFIQSNHSVIMYNNT 122
Query: 115 YGTHVLLEACKLTGQVKRFIHVSTDEVYGE-TDMESDIGNPEASQLLPTNPYSA---TKA 170
+ ++EA ++ G +KRF + S+ +Y E +E+ + + S P P A K
Sbjct: 123 MISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL 181
Query: 171 GAEMLVMAYHRSYGLPTITTRGNNVYGP----NQFPEKLIPKFILLAMKG-QQLPIHGNG 225
E L Y++ +G+ R +N+YGP EK F A + + G+G
Sbjct: 182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 241
Query: 226 SNVRSYLYCADVAEAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHY 285
RS+ + + E + L + N+G+ + S+ ++A + + E + IH+
Sbjct: 242 LQTRSFTFIDECVEGV-LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSF--EEKKLPIHH 298
Query: 286 VQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ R ++ ++LGW +EGL++T W K+
Sbjct: 299 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 341
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 147/343 (42%), Gaps = 37/343 (10%)
Query: 4 EFEPASYKPK---KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSR 60
E E Y P KI ITGA GFI SH+ RL + + ++A D KN H +
Sbjct: 18 ELEREQYWPSENLKISITGAGGFIASHIARRL--KHEGHYVIASD------WKKNEHMTE 69
Query: 61 ASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTN------NNI 114
+F D+ + N L V+EG+D + + AA G F +N NN
Sbjct: 70 DMFCDEFHLVDLRV--MENCLKVTEGVDHVFNLAADMG-----GMGFIQSNHSVIMYNNT 122
Query: 115 YGTHVLLEACKLTGQVKRFIHVSTDEVYGE-TDMESDIGNPEASQLLPTNP---YSATKA 170
+ ++EA ++ G +KRF + S+ +Y E +E+ + + S P P Y K
Sbjct: 123 MISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKL 181
Query: 171 GAEMLVMAYHRSYGLPTITTRGNNVYGP----NQFPEKLIPKFILLAMKG-QQLPIHGNG 225
E L Y++ +G+ R +N+YGP E F A + + G+G
Sbjct: 182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDG 241
Query: 226 SNVRSYLYCADVAEAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHY 285
RS+ + + E + L + N+G+ + S+ ++A + + E + IH+
Sbjct: 242 LQTRSFTFIDECVEGV-LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSF--EEKKLPIHH 298
Query: 286 VQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ R ++ ++LGW +EGL++T W K+
Sbjct: 299 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 341
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 25/335 (7%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLK 69
++ K++ +TG GF GS ++ L + + ALD S + + R + +
Sbjct: 7 WQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIV---RLNDLMESHI 63
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
GDI + + + + + H AAQ V S+ + + N+ GT LLE K G
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSY------ 183
+K +++++D+ Y + E G E + +PYS +K AE++ A+ S+
Sbjct: 124 IKAVVNITSDKCY--DNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANY 181
Query: 184 ---GLPTITTRGNNVYGPNQFP-EKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAE 239
G+ + R NV G + ++LIP IL + + Q I N ++R + + +
Sbjct: 182 EQHGVGLASVRAGNVIGGGDWAKDRLIPD-ILRSFENNQQVIIRNPYSIRPWQHVLEPLS 240
Query: 240 AFDVILHR-----GVIGHVYNVGTKKE--RSVLDVAADICTLFKLEPEKTIHYVQDRPFN 292
+ V+ R +N G + E ++V + + TL+ + + ++ P
Sbjct: 241 GYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGDDASWLLD-GENHPHE 299
Query: 293 DHRYFLDDQKLK-RLGWKEKTPWEEGLKLTLEWYK 326
H LD K +LGW + E L ++W+K
Sbjct: 300 AHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHK 334
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 155/385 (40%), Gaps = 78/385 (20%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-------DYCSSLKNL---------- 56
++L+ G AG+IGSH L+++ ++ +V +D L D+ + +N+
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 57 HPSRASPNFKFLKGDITCADLMNYLLVSEG-IDTIMHFAAQTHVDNSFGNSFEFTNNNIY 115
P A GD+ D +N + G ID ++H A V S + ++ +NN+
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 116 GTHVLLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEA----SQLLPTNPYSATKAG 171
G LL+A L + + I S+ ++G M S N E ++ P +PY +K
Sbjct: 123 GILRLLQAM-LLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLI 181
Query: 172 AEMLVMAYHRSYGLPTITTRGNNVYGPN---------QFPEKLIPKFILLAMK------- 215
AE ++ +YG+ I R N G + Q LIP + M
Sbjct: 182 AERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQR 241
Query: 216 ---------GQQLPIHG------NGSNVRSYLYCADVAEAFDVIL---------HRGVIG 251
+++PI G +G+ VR Y++ D+A A + L +
Sbjct: 242 LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYF 301
Query: 252 HVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQ----DRPFNDHRYFL--DDQKLKR 305
V+N+GT + SV +V ++ + T H + R D Y + D+ +
Sbjct: 302 SVFNLGTSRGYSVREV-------IEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREV 354
Query: 306 LGWKEKTPWEEGLKLTLEWYKKNPH 330
LGWK K E + + W + H
Sbjct: 355 LGWKPKYDTLEAI-METSWKFQRTH 378
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 129/318 (40%), Gaps = 28/318 (8%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
+ILITG AG +GS++ + +EI+ +D ++ + + + P A ++G +T
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ--GHEILVID--NFATGKREVLPPVA--GLSVIEGSVT 75
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
A L+ S ++H AA + + E N+ G+ + +A G VKR
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAAAYKDPDDWA---EDAATNVQGSINVAKAASKAG-VKRL 131
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
++ T YG + + P S P Y +K E +M +P ++ R
Sbjct: 132 LNFQTALCYGR---PATVPIPIDSPTAPFTSYGISKTAGEAFLMMSD----VPVVSLRLA 184
Query: 194 NVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
NV GP + IP F GQ+ VR +L +D D+ L G V
Sbjct: 185 NVTGP-RLAIGPIPTFYKRLKAGQKCFCS---DTVRDFLDMSDFLAIADLSLQEGRPTGV 240
Query: 254 YNVGTKKERS---VLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLGWK 309
+NV T + S V DV D EP + D + LD K + GWK
Sbjct: 241 FNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGAD---DVPSVVLDPSKTETEFGWK 297
Query: 310 EKTPWEEGLKLTLEWYKK 327
K +++ + L WY K
Sbjct: 298 AKVDFKDTITGQLAWYDK 315
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 138/356 (38%), Gaps = 48/356 (13%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYC--------SSLKNLHPSRASPN 64
+K+L+TG AG+IGSH L++ Y V +D SL+ + +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQ-ELTGRS 59
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
+F + DI + L ++HFA V S ++ N+ GT LLE
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 125 KLTGQVKRFIHVSTDEVYGETD-MESDIGNPEASQLLPTNPYSATKAGAEMLV------- 176
K G VK + S+ VYG + D +P TNPY +K E ++
Sbjct: 120 KAHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGG---CTNPYGKSKFFIEEMIRDLCQAD 175
Query: 177 -------MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN---- 224
+ Y G G + P P L+P +A+ + + L + GN
Sbjct: 176 KTWNVVLLRYFNPTGAHASGCIGED---PQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 225 --GSNVRSYLYCADVAEAFDVILHR---GVIGHVYNVGTKKERSVLDVAADICTLFKLEP 279
G+ VR Y++ D+A+ L + +YN+GT SVL + + + K
Sbjct: 233 EDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM---VQAMEKASG 289
Query: 280 EKTIHYVQDRPFNDHRYFLDDQKLKR--LGWKEKTPWEEGLKLTLEWYKKNPHWWG 333
+K + V R D + L + LGW + + W K+NP +G
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 138/356 (38%), Gaps = 48/356 (13%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYC--------SSLKNLHPSRASPN 64
+K+L+TG AG+IGSH L++ Y V +D SL+ + +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQ-ELTGRS 59
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
+F + DI + L ++HFA V S ++ N+ GT LLE
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 125 KLTGQVKRFIHVSTDEVYGETD-MESDIGNPEASQLLPTNPYSATKAGAEMLV------- 176
K G VK + S+ VYG + D +P TNPY +K E ++
Sbjct: 120 KAHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGG---CTNPYGKSKFFIEEMIRDLCQAD 175
Query: 177 -------MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN---- 224
+ Y G G + P P L+P +A+ + + L + GN
Sbjct: 176 KTWNAVLLRYFNPTGAHASGCIGED---PQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 225 --GSNVRSYLYCADVAEAFDVILHR---GVIGHVYNVGTKKERSVLDVAADICTLFKLEP 279
G+ VR Y++ D+A+ L + +YN+GT SVL + + + K
Sbjct: 233 EDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM---VQAMEKASG 289
Query: 280 EKTIHYVQDRPFNDHRYFLDDQKLKR--LGWKEKTPWEEGLKLTLEWYKKNPHWWG 333
+K + V R D + L + LGW + + W K+NP +G
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 138/356 (38%), Gaps = 48/356 (13%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYC--------SSLKNLHPSRASPN 64
+K+L+TG AG+IGSH L++ Y V +D SL+ + +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQ-ELTGRS 59
Query: 65 FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEAC 124
+F + DI + L ++HFA + S ++ N+ GT LLE
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 125 KLTGQVKRFIHVSTDEVYGETD-MESDIGNPEASQLLPTNPYSATKAGAEMLV------- 176
K G VK + S+ VYG + D +P TNPY +K E ++
Sbjct: 120 KAHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGG---CTNPYGKSKFFIEEMIRDLCQAD 175
Query: 177 -------MAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN---- 224
+ Y G G + P P L+P +A+ + + L + GN
Sbjct: 176 KTWNVVLLRYFNPTGAHASGCIGED---PQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 225 --GSNVRSYLYCADVAEAFDVILHR---GVIGHVYNVGTKKERSVLDVAADICTLFKLEP 279
G+ VR Y++ D+A+ L + +YN+GT SVL + + + K
Sbjct: 233 EDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM---VQAMEKASG 289
Query: 280 EKTIHYVQDRPFNDHRYFLDDQKLKR--LGWKEKTPWEEGLKLTLEWYKKNPHWWG 333
+K + V R D + L + LGW + + W K+NP +G
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + + +Y + + + E Q L PTN PY+ K L +Y+R
Sbjct: 96 --QNDVNKLLFLGSSCIYPKL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A K + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ ++A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 143/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + + +Y + + + E Q L PTN PY+ K L +Y+R
Sbjct: 96 --QNDVNKLLFLGSSCIYPKL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ D+A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRDLAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 45/346 (13%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-----DYCSSLKNLHPSRASPNFKFLK 69
IL+TG AG+IGSH L+ + Y++V D L + + ++ + + +P F +
Sbjct: 8 ILVTGGAGYIGSHTAVELLAH--GYDVVIADNLVNSKREAIARIEKI--TGKTPAFH--E 61
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
D++ + + + I +HFAA V S E+ NN+ LL +
Sbjct: 62 TDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA- 120
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEML---VMAYHRSYGLP 186
VKR + S+ VYG + S I E L TNPY TK AE + V A S+ +
Sbjct: 121 VKRIVFSSSATVYGVPE-RSPID--ETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVA 177
Query: 187 T------ITTRGNNVYG--PNQFPEKLIPKFILLAM-KGQQLPIHG------NGSNVRSY 231
T + + + G P P L+P +A+ K ++L + G +G+ VR Y
Sbjct: 178 TLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDY 237
Query: 232 LYCADVAE----AFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHY-- 285
++ D+A A D + R V N+GT + SVL+V F+ + + Y
Sbjct: 238 IHVVDLARGHIAALDALERRDASLTV-NLGTGRGYSVLEV----VRAFEKASGRAVPYEL 292
Query: 286 VQDRPFNDHRYFLD-DQKLKRLGWKEKTPWEEGLKLTLEWYKKNPH 330
V RP + + + + +GWK + E W + NP
Sbjct: 293 VARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + + +Y + + + E Q L PTN PY+ K L +Y+R
Sbjct: 96 --QNDVNKLLFLGSSCIYPKL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ ++A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 142/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + +Y + + + E Q L PTN PY+ K L +Y+R
Sbjct: 96 --QNDVNKLLFLGASCIYPKL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ ++A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + + +Y + + + E Q L PTN PY+ + L +Y+R
Sbjct: 96 --QNDVNKLLFLGSSCIYPKL-AKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ ++A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLH-----PSRASPNFKF 67
K LITG G GS++ L++ YE+ + + + + + P +P F
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL 59
Query: 68 LKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNN-NIYGTHVLLEACKL 126
GD++ + +L D + + A +HV SF S E+T + + GT LLEA +
Sbjct: 60 HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSF-ESPEYTADVDAMGTLRLLEAIRF 118
Query: 127 TGQVK--RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
G K RF ST E+YG + +I E + P +PY+ K A + + Y SYG
Sbjct: 119 LGLEKKTRFYQASTSELYG---LVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 185 L 185
+
Sbjct: 176 M 176
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 14/247 (5%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLK 69
++ K++ +TG GF G ++ L + +L S + +R + +
Sbjct: 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFET---ARVADGMQSEI 63
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
GDI + + + + + H AAQ V S+ E + N+ GT LLEA + G
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSY------ 183
VK +++++D+ Y + E G E + +PYS +K AE++ +Y S+
Sbjct: 124 VKAVVNITSDKCY--DNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANY 181
Query: 184 ---GLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEA 240
G T R NV G + I IL A + Q I N +R + + +
Sbjct: 182 GQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 241
Query: 241 FDVILHR 247
+ ++ +
Sbjct: 242 YLLLAQK 248
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 403 GRLEDKNSLLDDMKRVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCK 461
G + D+N LL+ ++ +P V + A +P V S VET TNVMGT+ L + +
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAA---QPLVRLSYSEPVETYSTNVMGTVYLLEAIR 119
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 64/346 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+++ I G G +GS + R ++ D E+V + + NL SRA +F
Sbjct: 4 QRVFIAGHRGMVGSAI-RRQLEQRGDVELVLRTRDEL-----NLLDSRAVHDF------- 50
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTH---VDNSFGNSFEFTN-----NNIYGTHVLLEAC 124
SE ID + AA+ +N++ F + N N I+ H
Sbjct: 51 ---------FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH------ 95
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQ--LLPTN-PYSATKAGAEMLVMAYHR 181
V + + + + +Y + + + E Q L PTN P + K L +Y+R
Sbjct: 96 --QNDVNKLLFLGSSCIYPKL-AKQPMAESELLQGTLEPTNEPEAIAKIAGIKLCESYNR 152
Query: 182 SYGLPTITTRGNNVYGP--NQFPEK--LIPKFI-----LLAMKGQQLPIHGNGSNVRSYL 232
YG + N+YGP N P +IP + A + + G+G+ +R +L
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFL 212
Query: 233 YCADVAEAFDVILH----------RGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKT 282
+ D+A A ++ + ++ H+ NVGT + ++ ++A I + +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGR-- 269
Query: 283 IHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKN 328
+ + +P R LD +L +LGW + E GL T +W+ +N
Sbjct: 270 VVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 148/360 (41%), Gaps = 60/360 (16%)
Query: 7 PASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPSRASPNF 65
P S K KK+LI G GFIG H++ R+++ D+E+ +D + D L
Sbjct: 19 PGSMKAKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRLGDLVK------HERM 71
Query: 66 KFLKGDITC-ADLMNYLLVSEGIDTIMHFAA----QTHVDNSFGNSFE--FTNNNIYGTH 118
F +GDIT + + Y + + D I+ A T+V FE F N
Sbjct: 72 HFFEGDITINKEWVEYHV--KKCDVILPLVAIATPATYVKQPL-RVFELDFEAN----LP 124
Query: 119 VLLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLL--PTNP----YSATKAGA 172
++ A K K + ST EVYG E +P+AS L P N Y+ +K
Sbjct: 125 IVRSAVKYG---KHLVFPSTSEVYGMCADEQ--FDPDASALTYGPINKPRWIYACSKQLM 179
Query: 173 EMLVMAYHRSYGLPTITTRGNN--------VYGPNQFPEKLIPKFILLAMKGQQLPIHGN 224
+ ++ Y GL R N +Y P + +++ +F+ ++G+ + +
Sbjct: 180 DRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDG 238
Query: 225 GSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGTKKER-SVLDVAADICTLFKLEPE 280
GS R++ Y D A I+ G +YN+G SV ++A + L PE
Sbjct: 239 GSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPE 298
Query: 281 -----KTIHYVQDRP-------FND--HRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYK 326
K + V+ + D +R + ++ LGW + +++ L+ E Y+
Sbjct: 299 YADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYR 358
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 20/282 (7%)
Query: 16 LITGAAGFIGSHVTNRLI-KNYPDYEIVALDKLDYCSSLKNLH---PSRASPNFKFLKGD 71
LITG G GS++ L+ K Y + IV +++L+ + N K GD
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 72 ITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVK 131
+T + + ++ I + AQ+HV SF + + + GT LL+A K G +
Sbjct: 88 LTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLIN 147
Query: 132 --RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTIT 189
+F ST E+YG+ +I E + P +PY A K A +V+ + +Y L +
Sbjct: 148 SVKFYQASTSELYGKV---QEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVN 204
Query: 190 TRGNNVYGPNQ---FPEKLIPKFILLAMKGQ-QLPIHGNGSNVRSYLYCADVAEAFDVIL 245
N P + F + I + + GQ + GN R + + D EA ++L
Sbjct: 205 GILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLML 264
Query: 246 HRG-------VIGHVYNVGTKKERSVLDVAADICTLFKLEPE 280
G V++V E+S L + I K E E
Sbjct: 265 QNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENE 306
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 25/318 (7%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
KK+ ITG G IGSH+ L++ ++V +D ++ + H + PN F++G I
Sbjct: 22 KKVFITGICGQIGSHIAELLLER--GDKVVGIDNF---ATGRREH-LKDHPNLTFVEGSI 75
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
L+N L+ D ++H AA + + N + N + G++V+ A K V R
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN--DTLTNCVGGSNVVQAAKK--NNVGR 131
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
F++ T YG ++ + P NP +++ A ++ Y GL +T R
Sbjct: 132 FVYFQTALCYGVKPIQQPVRLDH-----PRNPANSSYAISKSANEDYLEYSGLDFVTFRL 186
Query: 193 NNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGH 252
NV GP L P F +G++ + R +++ D+A A V GV
Sbjct: 187 ANVVGPRNVSGPL-PIFFQRLSEGKKCFVT---KARRDFVFVKDLARA-TVRAVDGVGHG 241
Query: 253 VYNVGTKKERSVLDVAADICTLFKLE--PEKTIHYVQDRPFNDHRYFLDDQK-LKRLGWK 309
Y+ + + ++ ++ + L PE I + P + LD + ++ G
Sbjct: 242 AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELG--PDDAPSILLDPSRTIQDFGKI 299
Query: 310 EKTPWEEGLKLTLEWYKK 327
E TP +E + + ++++
Sbjct: 300 EFTPLKETVAAAVAYFRE 317
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 145/369 (39%), Gaps = 65/369 (17%)
Query: 3 GEFEPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPS 59
G +PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN---- 56
Query: 60 RASPNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTH 118
P+F F++GDI+ ++ + Y + + D ++ A E+T N +
Sbjct: 57 --HPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFE 105
Query: 119 V-------LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP------- 164
+ ++ C KR I ST EVYG M SD E L P
Sbjct: 106 LDFEENLRIIRYC--VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWI 160
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKG 216
YS +K + ++ AY GL R N GP + I + IL ++G
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEG 220
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADIC 272
+ + G R + D EA I+ G + N+G + E S+ ++ +
Sbjct: 221 SPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL 280
Query: 273 TLFKLEP--------------EKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGL 318
F+ P E + +Y + +HR + L W+ K +E +
Sbjct: 281 ASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
Query: 319 KLTLEWYKK 327
TL+++ +
Sbjct: 341 DETLDFFLR 349
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 145/369 (39%), Gaps = 65/369 (17%)
Query: 3 GEFEPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPS 59
G +PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN---- 56
Query: 60 RASPNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTH 118
P+F F++GDI+ ++ + Y + + D ++ A E+T N +
Sbjct: 57 --HPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFE 105
Query: 119 V-------LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP------- 164
+ ++ C KR I ST EVYG M SD E L P
Sbjct: 106 LDFEENLRIIRYC--VKYRKRIIFPSTAEVYG---MCSDKYFDEDHSNLIVGPVNKPRWI 160
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKG 216
YS +K + ++ AY GL R N GP + I + IL ++G
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEG 220
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADIC 272
+ + G R + D EA I+ G + N+G + E S+ ++ +
Sbjct: 221 SPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL 280
Query: 273 TLFKLEP--------------EKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGL 318
F+ P E + +Y + +HR + L W+ K +E +
Sbjct: 281 ASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
Query: 319 KLTLEWYKK 327
TL+++ +
Sbjct: 341 DETLDFFLR 349
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 63/356 (17%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPSRASPNFKFLKGDI 72
++LI G GFIG+H+T RL++ YE+ LD D S N P+F F++GDI
Sbjct: 2 RVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDI 54
Query: 73 TC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHV-------LLEAC 124
+ ++ + Y + + D ++ A E+T N + + ++ C
Sbjct: 55 SIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYC 105
Query: 125 KLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP-------YSATKAGAEMLVM 177
KR I ST EVYG M SD E L P YS +K + ++
Sbjct: 106 --VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIW 160
Query: 178 AYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGQQLPIHGNGSNVR 229
AY GL R N GP + I + IL ++G + + G R
Sbjct: 161 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 220
Query: 230 SYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADICTLFKLEP------ 279
+ D EA I+ G + N+G + E S+ ++ + F+ P
Sbjct: 221 CFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFP 280
Query: 280 --------EKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKK 327
E + +Y + +HR + L W+ K +E + TL+++ +
Sbjct: 281 PFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLR 336
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 51/307 (16%)
Query: 3 GEFEPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPS 59
G +PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN---- 56
Query: 60 RASPNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTH 118
P+F F++GDI+ ++ + Y + + D ++ A E+T N +
Sbjct: 57 --HPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFE 105
Query: 119 V-------LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP------- 164
+ ++ C KR I ST EVYG M SD E L P
Sbjct: 106 LDFEENLRIIRYC--VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWI 160
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKG 216
YS +K + ++ AY GL R N GP + I + IL ++G
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEG 220
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADIC 272
+ + G R + D EA I+ G + N+G + E S+ ++ +
Sbjct: 221 SPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL 280
Query: 273 TLFKLEP 279
F+ P
Sbjct: 281 ASFEKHP 287
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 51/307 (16%)
Query: 3 GEFEPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPS 59
G +PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN---- 56
Query: 60 RASPNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTH 118
P+F F++GDI+ ++ + Y + + D ++ A E+T N +
Sbjct: 57 --HPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFE 105
Query: 119 V-------LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP------- 164
+ ++ C KR I ST EVYG M SD E L P
Sbjct: 106 LDFEENLRIIRYC--VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWI 160
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKG 216
YS +K + ++ AY GL R N GP + I + IL ++G
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEG 220
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADIC 272
+ + G R + D EA I+ G + N+G + E S+ ++ +
Sbjct: 221 SPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL 280
Query: 273 TLFKLEP 279
F+ P
Sbjct: 281 ASFEKHP 287
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 51/307 (16%)
Query: 3 GEFEPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPS 59
G +PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN---- 56
Query: 60 RASPNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTH 118
P+F F++GDI+ ++ + Y + + D ++ A E+T N +
Sbjct: 57 --HPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFE 105
Query: 119 V-------LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP------- 164
+ ++ C KR I ST EVYG M SD E L P
Sbjct: 106 LDFEENLRIIRYC--VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWI 160
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKG 216
YS +K + ++ AY GL R N GP + I + IL ++G
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEG 220
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADIC 272
+ + G R + D EA I+ G + N+G + E S+ ++ +
Sbjct: 221 SPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL 280
Query: 273 TLFKLEP 279
F+ P
Sbjct: 281 ASFEKHP 287
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG++G IG+ + L + Y ++A D + R + KF+ D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----------QRDTGGIKFITLDVSN 50
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
D ++ + ID I H A + + N+ GT+ +LEA K +V++ +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
ST V+G ++ + P + P Y TK AE+L Y+ +GL + R
Sbjct: 109 IPSTIGVFGPETPKNKV--PSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+ ILITG G G +++ +I+ + + S + P +F GD+
Sbjct: 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS--EMAMEFNDPRMRFFIGDV 79
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +NY L EG+D +H AA HV + N E NI G ++ AC L + +
Sbjct: 80 RDLERLNYAL--EGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC-LKNAISQ 136
Query: 133 FIHVSTDE------VYGETDMESD 150
I +STD+ +YG T + SD
Sbjct: 137 VIALSTDKAANPINLYGATKLCSD 160
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 144/367 (39%), Gaps = 65/367 (17%)
Query: 6 EPA--SYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALD-KLDYCSSLKNLHPSRAS 62
+PA + + ++LI G GFIG+H+T RL++ YE+ LD D S N
Sbjct: 307 QPACTARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------H 359
Query: 63 PNFKFLKGDITC-ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHV-- 119
P+F F++GDI+ ++ + Y + + D ++ A E+T N + +
Sbjct: 360 PHFHFVEGDISIHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDF 410
Query: 120 -----LLEACKLTGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNP-------YSA 167
++ C KR I ST EVYG M SD E L P YS
Sbjct: 411 EENLRIIRYC--VKYRKRIIFPSTSEVYG---MCSDKYFDEDHSNLIVGPVNKPRWIYSV 465
Query: 168 TKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGQQL 219
+K + ++ AY GL R N GP + I + IL ++G +
Sbjct: 466 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPI 525
Query: 220 PIHGNGSNVRSYLYCADVAEAFDVILHRG---VIGHVYNVGT-KKERSVLDVAADICTLF 275
+ G R + D EA I+ G + N+G + E S+ ++ + F
Sbjct: 526 KLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASF 585
Query: 276 KLEP--------------EKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLT 321
+ P E + +Y + +HR + L W+ K +E + T
Sbjct: 586 EKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDET 645
Query: 322 LEWYKKN 328
L+++ +
Sbjct: 646 LDFFLRT 652
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 38/215 (17%)
Query: 6 EPASYKP-KKILITGAAGFIGSHVTNRLIKNY---------PDYEIVALDKL-----DYC 50
+ S++P L+TGA GF+G+++ L + Y D E +A KL DY
Sbjct: 143 DSLSHRPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRADNEEIAWYKLMTNLNDYF 201
Query: 51 SSLKNLHPSRASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFT 110
S N + + GD C M+ +++ E +DTI+H A+T + FG+ EF
Sbjct: 202 SEET---VEMMLSNIEVIVGDFEC---MDDVVLPENMDTIIHAGART---DHFGDDDEFE 252
Query: 111 NNNIYGTHVLLEACKLTGQ-VKRFIHVSTDEV--YGETDMESDIGNPEAS----QLLPTN 163
N+ GT ++ +L Q R I+VST V Y + D E D+ EA QLL T+
Sbjct: 253 KVNVQGT---VDVIRLAQQHHARLIYVSTISVGTYFDIDTE-DVTFSEADVYKGQLL-TS 307
Query: 164 PYSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGP 198
PY+ +K +E+ V+ + GL R N+ P
Sbjct: 308 PYTRSKFYSELKVLEAVNN-GLDGRIVRVGNLTSP 341
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG++G IG+ + L + Y ++A D + R + KF+ D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----------QRDTGGIKFITLDVSN 50
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
D ++ + ID I H A + + N+ GT+ +LEA K +V++ +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
ST V+G ++ + P + P + TK AE+L Y+ +GL + R
Sbjct: 109 IPSTIGVFGPETPKNKV--PSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 31/334 (9%)
Query: 11 KPKKI-LITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPN----- 64
+P+KI LITG G GS++T L+ YE+ L + + + ++ P+
Sbjct: 26 EPRKIALITGITGQDGSYLTEFLLGK--GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKA 83
Query: 65 -FKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEA 123
K D+T A + + D + + AAQ+HV SF + G LLEA
Sbjct: 84 LMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEA 143
Query: 124 CKL----TGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAY 179
+ +G+ ++ + E++G T E + P +PY+A+K A + Y
Sbjct: 144 VRSHTIDSGRTVKYYQAGSSEMFGSTPPPQS----ETTPFHPRSPYAASKCAAHWYTVNY 199
Query: 180 HRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIH-----GNGSNVRSYLYC 234
+YGL N P + E + + I A+ ++ + GN R + +
Sbjct: 200 REAYGLFACNGILFNHESPRR-GENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFA 258
Query: 235 ADVAEAFDVILHRGVIGHVYNVGTKKERSV---LDVAADICTL-FKLEPEKTIHYVQDRP 290
D EA ++L + Y V T++ +V LDV+ L +K E Y RP
Sbjct: 259 GDYVEAMWLMLQQEKPDD-YVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYF--RP 315
Query: 291 FNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLE 323
D K K LGWK + +E+ +K+ ++
Sbjct: 316 AEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVD 349
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K++L+TGAAG +G + RL P EI+ L + L L P A PN + ++ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDP--AGPNEECVQCDL 52
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
A+ +N ++ G D I+H V+ F + NI G + L EA + GQ R
Sbjct: 53 ADANAVNAMVA--GCDGIVHLGG-ISVEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR- 191
+ S++ G +G ++ P Y +K E L Y +G T R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 192 GNNVYGPNQF 201
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 9 SYKP-KKILITGAAGFIGSHVTNRLIKNY---------PDYEIVALDKL-----DYCSSL 53
S++P L+TGA GF+G+++ L + Y D E +A KL DY S
Sbjct: 65 SHRPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEE 123
Query: 54 KNLHPSRASPNFKFLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNN 113
N + + GD C D +++ E DTI+H A+T + FG+ EF N
Sbjct: 124 T---VEXXLSNIEVIVGDFECXD---DVVLPENXDTIIHAGART---DHFGDDDEFEKVN 174
Query: 114 IYGTHVLLEACKLTGQ-VKRFIHVSTDEV--YGETDMESDIGNPEA----SQLLPTNPYS 166
+ GT ++ +L Q R I+VST V Y + D E D+ EA QLL T+PY+
Sbjct: 175 VQGT---VDVIRLAQQHHARLIYVSTISVGTYFDIDTE-DVTFSEADVYKGQLL-TSPYT 229
Query: 167 ATKAGAEMLVMAYHRSYGLPTITTRGNNVYGP 198
+K +E+ V+ + GL R N+ P
Sbjct: 230 RSKFYSELKVLEAVNN-GLDGRIVRVGNLTSP 260
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 11/240 (4%)
Query: 13 KKILITGAAGFIGSHVTNRLI-KNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGD 71
+ L+TG G G+++ L+ K Y + +VA D L+ L + ++ GD
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG---IEGDIQYEDGD 71
Query: 72 ITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVK 131
+ A + ++ + + AAQ+ V S+ + G LLEA +
Sbjct: 72 MADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET 131
Query: 132 RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
RF ST E++G E E + P +PY K + + Y S+GL +
Sbjct: 132 RFYQASTSEMFGLIQAER---QDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGI 188
Query: 192 GNNVYGPNQFPE----KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
N P + E K+ + + QQ GN R + + D EA ++L +
Sbjct: 189 LFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQ 248
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 105/259 (40%), Gaps = 30/259 (11%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLD-----YCSSLKNLHPSRASPNFKFL 68
++ +TG GF+GS + L++N Y + + D S L NL AS F
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLEN--GYSVNTTIRADPERKRDVSFLTNL--PGASEKLHFF 58
Query: 69 KGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEF-TNNNIYGTHVLLEACKLT 127
D++ D ++ EG I H A+ +D + E T + G +L+AC +
Sbjct: 59 NADLSNPD--SFAAAIEGCVGIFHTASP--IDFAVSEPEEIVTKRTVDGALGILKACVNS 114
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGN----PEASQLLPTNP----YSATKAGAEMLVMAY 179
VKRFI+ S+ + D+ + + L P Y+ +K AE V+ +
Sbjct: 115 KTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEF 174
Query: 180 HRSYGLPTITTRGNNVYGP---NQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCAD 236
G+ +T + G + P+ + +L+ K +Q+ G ++ D
Sbjct: 175 GEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI-----GVTRFHMVHVDD 229
Query: 237 VAEAFDVILHRGVIGHVYN 255
VA A +L V G YN
Sbjct: 230 VARAHIYLLENSVPGGRYN 248
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 52/316 (16%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
++++ITGA G +G + L N +Y+I DK K L DI
Sbjct: 6 ERVIITGANGQLGKQLQEEL--NPEEYDIYPFDK-------------------KLL--DI 42
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
T + ++ I+H AA T VD + N G + A +L G +
Sbjct: 43 TNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG--AK 100
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
+++STD V+ E G E P N Y A+K E V H Y R
Sbjct: 101 LVYISTDYVFQGDRPE---GYDEFHNPAPINIYGASKYAGEQFVKELHNKY----FIVRT 153
Query: 193 NNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIG- 251
+ +YG ++ + I L + +++ + + + S Y AD+ + ++H + G
Sbjct: 154 SWLYG--KYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSLYGT 209
Query: 252 -HVYNVGTKKERSVLDVAADICTLFKLE----PEKTIHY--VQDRPFNDHRYFLDDQKLK 304
HV N G+ S + A I + ++ P T + RP +Y + +
Sbjct: 210 YHVSNTGSC---SWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARP----KYSIFQHNML 262
Query: 305 RL-GWKEKTPWEEGLK 319
RL G+ + WEEGL+
Sbjct: 263 RLNGFLQMPSWEEGLE 278
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 133/337 (39%), Gaps = 34/337 (10%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ LITG G G+++ L++ YE+ D+ + L + K + D+
Sbjct: 4 KRALITGIRGQDGAYLAKLLLEK--GYEVYGADRRSGEFASWRLKELGIENDVKIIHMDL 61
Query: 73 TCADLMNYLLVSEGI--DTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
+ N + E + D + + AAQ+ V SF + G +LEA +
Sbjct: 62 L--EFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGL----P 186
+F ST E++G+ +I E + P +PY+ K + + Y +Y +
Sbjct: 120 TKFYQASTSEMFGKV---QEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSG 176
Query: 187 TITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILH 246
+ + + G K+ + Q + GN + R + Y + EA +++
Sbjct: 177 ILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQ 236
Query: 247 RGVI-GHVYNVG-TKKERSVLDVAADICTLFKLE--------------PEKTIHYVQDRP 290
+ +V G T R ++ AA I F +E K I V +
Sbjct: 237 QPEPDDYVIATGETHTVREFVEKAAKIAG-FDIEWVGEGINEKGIDRNTGKVIVEVSEEF 295
Query: 291 FNDHRYFL----DDQKLKRLGWKEKTPWEEGLKLTLE 323
F + ++ +K+LGWK +T ++E +++ +E
Sbjct: 296 FRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMME 332
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K++L+TGAAG +G + RL P EI+ L + L L P A PN + ++ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDP--AGPNEECVQCDL 52
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
A+ +N ++ G D I+H V+ F + NI G + L EA + GQ R
Sbjct: 53 ADANAVNAMVA--GCDGIVHLGG-ISVEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR- 191
+ S++ G +G ++ P +K E L Y +G T R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 192 GNNVYGPNQF 201
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG+AG +G V + AL +L PS G+
Sbjct: 22 ILVTGSAGRVGRAV------------VAALRTQGRTVRGFDLRPSGTG-------GEEVV 62
Query: 75 ADLMNYLLVSE---GIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVK 131
L + +S+ G+ ++H A + + + N+ GT LL+A G V+
Sbjct: 63 GSLEDGQALSDAIMGVSAVLHLGA--FMSWAPADRDRMFAVNVEGTRRLLDAASAAG-VR 119
Query: 132 RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
RF+ S+ EVY E E + E L P +PY TK E LV + RS + T+ R
Sbjct: 120 RFVFASSGEVYPENRPEF-LPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILR 178
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPN--------QFPEKLIPKFILLAMKG 216
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 143 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 202
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVIL--HRGVIGHVYNVGTKKERSVLDVAADICTL 274
L + G G+ R ++Y D+A+ F +L + V + +VG + E S+ + A +
Sbjct: 203 SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEA 262
Query: 275 FKLEPEKTIHYVQ-DRPFNDH------RYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKK 327
E T + D F R +L D + TP+++ +K T W+
Sbjct: 263 MDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRF--------TPFKQAVKETCAWFTD 314
Query: 328 N 328
N
Sbjct: 315 N 315
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 165 YSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPN--------QFPEKLIPKFILLAMKG 216
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 201
Query: 217 QQLPIHGNGSNVRSYLYCADVAEAFDVIL--HRGVIGHVYNVGTKKERSVLDVAADICTL 274
L + G G+ R ++Y D+A+ F +L + V + +VG + E S+ + A +
Sbjct: 202 SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEA 261
Query: 275 FKLEPEKTIHYVQ-DRPFNDH------RYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKK 327
E T + D F R +L D + TP+++ +K T W+
Sbjct: 262 MDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRF--------TPFKQAVKETCAWFTD 313
Query: 328 N 328
N
Sbjct: 314 N 314
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
+L+TGA GF+ SHV +L+++ Y++ + S L NL R +
Sbjct: 14 VLVTGANGFVASHVVEQLLEH--GYKVRGTAR--SASKLANLQ-KRWDAKYPGRFETAVV 68
Query: 75 ADLMN---YLLVSEGIDTIMHFAAQTHVDNSFGNSF-EFTNNNIYGTHVLLEACKLTGQV 130
D++ Y V +G + H A+ SF N + E I GT L A T V
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVV----SFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 131 KRFIHVST 138
KRF+ S+
Sbjct: 125 KRFVLTSS 132
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 51/281 (18%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-----DYCSSLKNLHP-----SRAS 62
K++++ G G+ G L K +YE+ +D L D+ L++L P R S
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 59
Query: 63 PNFKFLKG---DITCADLMNYLLVSEGI-----DTIMHFAAQTHVDNSF---GNSFEFTN 111
+K L G ++ D+ ++ ++E D+++HF Q S + +
Sbjct: 60 -RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQH 118
Query: 112 NNIYGTHVLLEACKLTGQVKRFIHVSTDEVYGETDMESDIG-----NPEASQLLP----- 161
NN+ GT +L A K G+ + + T YG +++ + G + + LP
Sbjct: 119 NNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 178
Query: 162 TNPYSATKAGAEMLVMAYHRSYGLPTITTRGNNVYG----PNQFPEKL------------ 205
++ Y +K + +++G+ VYG + E+L
Sbjct: 179 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 238
Query: 206 -IPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVIL 245
+ +F + A G L ++G G R YL D + ++ +
Sbjct: 239 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI 279
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
+L+TGA GF+ SHV +L+++ Y++ + S L NL R +
Sbjct: 14 VLVTGANGFVASHVVEQLLEH--GYKVRGTAR--SASKLANLQ-KRWDAKYPGRFETAVV 68
Query: 75 ADLMN---YLLVSEGIDTIMHFAAQTHVDNSFGNSF-EFTNNNIYGTHVLLEACKLTGQV 130
D + Y V +G + H A+ SF N + E I GT L A T V
Sbjct: 69 EDXLKQGAYDEVIKGAAGVAHIASVV----SFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 131 KRFIHVST 138
KRF+ S+
Sbjct: 125 KRFVLTSS 132
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 38/269 (14%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
I++TG AGFIGS++ + + + +I+ +D L + NL D+
Sbjct: 2 IIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLV-------------DLNI 47
Query: 75 ADLMN------YLLVSE---GIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK 125
AD M+ ++ E ++ I H A + G +NN + LL C
Sbjct: 48 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKY--MMDNNYQYSKELLHYC- 104
Query: 126 LTGQVKRFIHVSTDEVYGETDMESD-IGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
L ++ F++ S+ YG SD I + E + P N Y +K + V
Sbjct: 105 LEREIP-FLYASSAATYG--GRTSDFIESREYEK--PLNVYGYSKFLFDEYVRQILPEAN 159
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFIL---LAMKGQQLP--IHGNGSNVRSYLYCADVAE 239
+ R NVYGP + + + + + P G+ + R ++Y DVA+
Sbjct: 160 SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAD 219
Query: 240 AFDVILHRGVIGHVYNVGTKKERSVLDVA 268
L GV G ++N+GT + S VA
Sbjct: 220 VNLWFLENGVSG-IFNLGTGRAESFQAVA 247
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 51/280 (18%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-----DYCSSLKNLHP-----SRASP 63
++++ G G+ G L K +YE+ +D L D+ L++L P R S
Sbjct: 13 RVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS- 69
Query: 64 NFKFLKG---DITCADLMNYLLVSEGI-----DTIMHFAAQTHVDNSF---GNSFEFTNN 112
+K L G ++ D+ ++ ++E D+++HF Q S + +N
Sbjct: 70 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
Query: 113 NIYGTHVLLEACKLTGQVKRFIHVSTDEVYGETDMESDIG-----NPEASQLLP-----T 162
N+ GT +L A K G+ + + T YG +++ + G + + LP +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 163 NPYSATKAGAEMLVMAYHRSYGLPTITTRGNNVYG----PNQFPEKL------------- 205
+ Y +K + +++G+ VYG + E+L
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 249
Query: 206 IPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVIL 245
+ +F + A G L ++G G R YL D + ++ +
Sbjct: 250 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI 289
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 27/230 (11%)
Query: 11 KPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKG 70
+ + + +TGA+GFIGS + RL++ D + L +A + K
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
D+ AD ++ +G + H A ++ + E I G ++++C V
Sbjct: 64 DL--ADEGSFDEAIKGCTGVFHVATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTV 120
Query: 131 KRFIHVSTD----------EVYGE---TDMESDIGNPEASQLLPTNPYSATKAGAEMLVM 177
+R + S+ VY E +DME + + Y +K AE
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWM-----YFVSKTLAEQAAW 175
Query: 178 AYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSN 227
Y + + IT V GP F +P ++ A+ PI GN ++
Sbjct: 176 KYAKENNIDFITIIPTLVVGP--FIMSSMPPSLITALS----PITGNEAH 219
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 44/274 (16%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+ I++TG AGFIGS++ + + + +I+ +D L + NL D+
Sbjct: 47 RMIIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLV-------------DL 92
Query: 73 TCADLMN------YLLVSE---GIDTIMHFAA---QTHVDNSFGNSFEFTNNNIYGTHVL 120
AD M+ ++ E ++ I H A T D + +NN + L
Sbjct: 93 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY-----MMDNNYQYSKEL 147
Query: 121 LEACKLTGQVKRFIHVSTDEVYGETDMESD-IGNPEASQLLPTNPYSATKAGAEMLVMAY 179
L C L ++ F++ S+ YG SD I + E + P N + +K + V
Sbjct: 148 LHYC-LEREIP-FLYASSAATYG--GRTSDFIESREYEK--PLNVFGYSKFLFDEYVRQI 201
Query: 180 HRSYGLPTITTRGNNVYGPNQFPEKLIPKFIL---LAMKGQQLP--IHGNGSNVRSYLYC 234
+ R NVYGP + + + + + P G+ + R ++Y
Sbjct: 202 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYV 261
Query: 235 ADVAEAFDVILHRGVIGHVYNVGTKKERSVLDVA 268
DVA+ L GV G ++N+GT + S VA
Sbjct: 262 GDVADVNLWFLENGVSG-IFNLGTGRAESFQAVA 294
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 110/280 (39%), Gaps = 51/280 (18%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL-----DYCSSLKNLHP-----SRASP 63
++++ G G+ G L K +YE+ +D L D+ L++L P R S
Sbjct: 13 RVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS- 69
Query: 64 NFKFLKG---DITCADLMNYLLVSEGI-----DTIMHFAAQTHVDNSF---GNSFEFTNN 112
+K L G ++ D+ ++ ++E D+++HF Q S + +N
Sbjct: 70 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
Query: 113 NIYGTHVLLEACKLTGQVKRFIHVSTDEVYGETDMESDIG-----NPEASQLLP-----T 162
N+ GT +L A K G+ + + YG +++ + G + + LP +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 163 NPYSATKAGAEMLVMAYHRSYGLPTITTRGNNVYG----PNQFPEKL------------- 205
+ Y +K + +++G+ VYG + E+L
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 249
Query: 206 IPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVIL 245
+ +F + A G L ++G G R YL D + ++ +
Sbjct: 250 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI 289
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KILI GA G IG+ +T +L K Y ++A D + + N P F
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDF------ 57
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+ + +L+ I I AA +F + N HVL ++K+
Sbjct: 58 --NQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVL--NLAKAKKIKKI 113
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
S+ V+G T + + P+ + + P+ Y +K E YH YG+ + R
Sbjct: 114 FWPSSIAVFGPTTPKEN--TPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIR 169
>pdb|3DZB|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Thermophilus
pdb|3DZB|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Thermophilus
Length = 317
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCS--SLKNLHPSRASPNFK 66
KK + G IG + + +++PDYEI+ ++ DY +L+ RA+ +FK
Sbjct: 5 KKTIYIAGLGLIGGSLALGIKRDHPDYEILGYNRSDYSRNIALERGIVDRATGDFK 60
>pdb|3E48|A Chain A, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
pdb|3E48|B Chain B, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
Length = 289
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDY 39
I +TGA G +G+H+TN+ I N+ D+
Sbjct: 3 IXLTGATGHLGTHITNQAIANHIDH 27
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 92 HFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFIHVSTDEVYG 143
H+A Q HV +S G EF ++N G H + A TG K + + T + G
Sbjct: 113 HYATQEHVYDSLGE--EFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPG 162
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 62/170 (36%), Gaps = 28/170 (16%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KILITGA G +G + +L + E++ D D DIT
Sbjct: 14 KILITGANGQLGREIQKQL--KGKNVEVIPTDVQDL---------------------DIT 50
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+N + + +++ AA T VD N G L A G
Sbjct: 51 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EI 108
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSY 183
+ +STD V+ D E+ E ++ P + Y TK E V A + Y
Sbjct: 109 VQISTDYVF---DGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKY 155
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 190 TRGNNVY-GPNQFPEKLIPKFIL-LAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
R N ++ G N+ LIP +L A+KG QLP+ ++ L E D+ LH+
Sbjct: 391 ARINRIFEGTNEINRLLIPGMLLRRALKG-QLPLMQAAQRLQKELLEPSFEEPEDLELHQ 449
Query: 248 ------------GVIGHVYNVGTKKERSVLDVAADIC 272
G+ Y G ++E+ VL ADI
Sbjct: 450 VQNLKKLALMVAGLAVQKYGQGVEEEQEVLGAVADIL 486
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 17 ITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCS-SLKNLHPSRAS----PNFKFLKGD 71
I GA G+ G + RL+KN+P+ +I L Y L+ + PS F K
Sbjct: 18 IIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVS 76
Query: 72 ITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIY 115
C L L D + +D G F F + +Y
Sbjct: 77 KNCDVLFTALPAGASYDLVRELKGVKIID--LGADFRFDDPGVY 118
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVAL 44
I ITGA G +G +V L+K P +IVA+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAI 31
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 630 NFNLEEQAKVLVAPRSNNHMDVTKLKKEFPEVLSIKDSIIKY 671
N+ L+EQ K+ R NH+ V + P +L I DSI++Y
Sbjct: 11 NWLLKEQEKIQTKYRHLNHISVVE-----PNILFIGDSIVEY 47
>pdb|1CW0|A Chain A, Crystal Structure Analysis Of Very Short Patch Repair
(Vsr) Endonuclease In Complex With A Duplex Dna
Length = 155
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 272 CTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLK 319
C LFK+ +T +++ N R D +L+ LGW+ WE L+
Sbjct: 72 CYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 119
>pdb|1VSR|A Chain A, Very Short Patch Repair (Vsr) Endonuclease From
Escherichia Coli
Length = 136
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 272 CTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLK 319
C LFK+ +T +++ N R D +L+ LGW+ WE L+
Sbjct: 53 CYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 100
>pdb|1ODG|A Chain A, Very-Short-Patch Dna Repair Endonuclease Bound To Its
Reaction Product Site
Length = 134
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 272 CTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLK 319
C LFK+ +T +++ N R D +L+ LGW+ WE L+
Sbjct: 51 CYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 98
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 12 PKKILITGAAGFIGSHVTNRLI 33
PK++L+ GA G G H+ +R++
Sbjct: 5 PKRVLLAGATGLTGEHLLDRIL 26
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 11 KPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKG 70
K KKI++ GA+GF+GS + N + +E+ A+ + ++N H K K
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEH-------LKVKKA 53
Query: 71 DITCAD 76
D++ D
Sbjct: 54 DVSSLD 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,495,966
Number of Sequences: 62578
Number of extensions: 937668
Number of successful extensions: 2433
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2166
Number of HSP's gapped (non-prelim): 134
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)