BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035631
(684 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/690 (70%), Positives = 570/690 (82%), Gaps = 42/690 (6%)
Query: 8 ASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKF 67
ASY PK ILITGAAGFI SHV NRLI++YPDY+IV LDKLDYCS+LKNL+PS+ SPNFKF
Sbjct: 2 ASYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKF 61
Query: 68 LKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLT 127
+KGDI ADL+N+LL++EGIDTIMHFAAQTHVDNSFGNSFEFT NNIYGTHVLLEACK+T
Sbjct: 62 VKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPT 187
GQ++RFIHVSTDEVYGETD ++ +GN EASQLLPTNPYSATKAGAEMLVMAY RSYGLP
Sbjct: 122 GQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
Query: 188 ITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
ITTRGNNVYGPNQFPEKLIPKFILLAM+GQ LPIHG+GSNVRSYLYC DVAEAF+V+LH+
Sbjct: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 241
Query: 248 GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLG 307
G +GHVYN+GTKKER V DVA DIC LF ++PE I +V +RPFND RYFLDDQKLK+LG
Sbjct: 242 GEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKKLG 301
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVILLTDSC---GNDDAFFLHNGY 364
W E+T WEEGLK T++WY +NP WWGDV+GAL PHP ++++ G++D
Sbjct: 302 WSERTTWEEGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRHFDGSEDNSLAATLS 361
Query: 365 EICGRSR----------------LKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGRLEDK 408
E ++ LKFLIYGKTGWIGGLLGK C +GIA+E+G GRLED+
Sbjct: 362 EKPSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDR 421
Query: 409 NSLLDDMKRVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLM 468
+SLL D++ V+PTHV N+AG+TGRPNVDWCESH+ ETIR NV GTLTLADVC+E +L+M
Sbjct: 422 SSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMM 481
Query: 469 NFATGCIYEYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTFLSYLEIFVLVICIECL 528
NFATGCI+EYD HP+GS IGFKE+D PNFT SFYSKTKAM
Sbjct: 482 NFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAM------------------- 522
Query: 529 INFQVEGLLKAYENVCTLRLRMPISSDLSNPRNFVTKLARYNKVVNIPNSMTVLDEMLPI 588
VE LLK Y+NVCTLR+RMPISSDL+NPRNF+TK++RYNKVVNIPNSMTVLDE+LPI
Sbjct: 523 ----VEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPI 578
Query: 589 AIEMARRNCRGAWNFTNPGVISHNEILELYKEYIDPQLKWSNFNLEEQAKVLVAPRSNNH 648
+IEMA+RN +G WNFTNPGV+SHNEILE+Y++YI+P+ KW+NF LEEQAKV+VAPRSNN
Sbjct: 579 SIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNE 638
Query: 649 MDVTKLKKEFPEVLSIKDSIIKYVLEPNKK 678
MD +KLKKEFPE+LSIK+S+IKY PNKK
Sbjct: 639 MDASKLKKEFPELLSIKESLIKYAYGPNKK 668
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/685 (70%), Positives = 571/685 (83%), Gaps = 37/685 (5%)
Query: 8 ASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKF 67
A+YKPK ILITGAAGFI SHV NRL+++YPDY+IV LDKLDYCS+LKNL+PS++SPNFKF
Sbjct: 2 ATYKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKF 61
Query: 68 LKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLT 127
+KGDI ADL+NYLL++E IDTIMHFAAQTHVDNSFGNSFEFT NNIYGTHVLLEACK+T
Sbjct: 62 VKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPT 187
GQ++RFIHVSTDEVYGETD ++ +GN EASQLLPTNPYSATKAGAEMLVMAY RSYGLP
Sbjct: 122 GQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
Query: 188 ITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
ITTRGNNVYGPNQFPEKLIPKFILLAM G+ LPIHG+GSNVRSYLYC DVAEAF+V+LH+
Sbjct: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 241
Query: 248 GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLG 307
G + HVYN+GT +ER V+DVA DI LF ++P+ TI YV++RPFND RYFLDDQKLK+LG
Sbjct: 242 GEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKKLG 301
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVILL------------TDSCGND 355
W E+T WEEGL+ T+EWY +NP WWGDV+GAL PHP ++++ ++ GN
Sbjct: 302 WCERTNWEEGLRKTMEWYTENPEWWGDVSGALLPHPRMLMMPGDRHSDGSDEHKNADGNQ 361
Query: 356 DAFFLHNGYEICG--RSRLKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGRLEDKNSLLD 413
+ C + LKFLIYGKTGW+GGLLGK C+ +GI +E+G GRLED+ SL+
Sbjct: 362 TFTVVTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIA 421
Query: 414 DMKRVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFATG 473
D++ ++P+HV NAAG+TGRPNVDWCESH+ ETIR NV GTLTLADVC+E ++L+MNFATG
Sbjct: 422 DIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATG 481
Query: 474 CIYEYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTFLSYLEIFVLVICIECLINFQV 533
CI+EYD+ HP+GS IGFKE+D+PNFT SFYSKTKAM V
Sbjct: 482 CIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAM-----------------------V 518
Query: 534 EGLLKAYENVCTLRLRMPISSDLSNPRNFVTKLARYNKVVNIPNSMTVLDEMLPIAIEMA 593
E LL+ ++NVCTLR+RMPISSDL+NPRNF+TK++RYNKVVNIPNSMT+LDE+LPI+IEMA
Sbjct: 519 EELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMA 578
Query: 594 RRNCRGAWNFTNPGVISHNEILELYKEYIDPQLKWSNFNLEEQAKVLVAPRSNNHMDVTK 653
+RN RG WNFTNPGV+SHNEILE+YK YI+P KWSNFNLEEQAKV+VAPRSNN MD K
Sbjct: 579 KRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAK 638
Query: 654 LKKEFPEVLSIKDSIIKYVLEPNKK 678
L KEFPE+LSIKDS+IKYV EPNK+
Sbjct: 639 LSKEFPEMLSIKDSLIKYVFEPNKR 663
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/687 (70%), Positives = 568/687 (82%), Gaps = 40/687 (5%)
Query: 8 ASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKF 67
+YKPK ILITGAAGFI SHV NRLI+NYPDY+IV LDKLDYCS LKNL PS +SPNFKF
Sbjct: 4 TTYKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKF 63
Query: 68 LKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLT 127
+KGDI DL+NYLL++E IDTIMHFAAQTHVDNSFGNSFEFT NNIYGTHVLLEACK+T
Sbjct: 64 VKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 123
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPT 187
GQ++RFIHVSTDEVYGETD ++ +GN EASQLLPTNPYSATKAGAEMLVMAY RSYGLP
Sbjct: 124 GQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 183
Query: 188 ITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
ITTRGNNVYGPNQFPEK+IPKFILLAM G+ LPIHG+GSNVRSYLYC DVAEAF+V+LH+
Sbjct: 184 ITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 243
Query: 248 GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLG 307
G IGHVYNVGTK+ER V+DVA DIC LF +PE +I +V++RPFND RYFLDDQKLK+LG
Sbjct: 244 GEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLG 303
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVILL------------TDSCGND 355
W+E+T WE+GLK T++WY +NP WWGDV+GAL PHP ++++ D N
Sbjct: 304 WQERTNWEDGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRLSDGSSEKKDVSSNT 363
Query: 356 DAFFL----HNGYEICGRSRLKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGRLEDKNSL 411
F NG + ++ LKFLIYGKTGW+GGLLGK C+ +GI +E+G GRLED+ SL
Sbjct: 364 VQTFTVVTPKNG-DSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASL 422
Query: 412 LDDMKRVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFA 471
+ D++ ++PTHV NAAG+TGRPNVDWCESH+ ETIR NV GTLTLADVC+E ++L+MNFA
Sbjct: 423 VADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFA 482
Query: 472 TGCIYEYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTFLSYLEIFVLVICIECLINF 531
TGCI+EYD+ HP+GS IGFKE+D+PNF SFYSKTKAM
Sbjct: 483 TGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAM---------------------- 520
Query: 532 QVEGLLKAYENVCTLRLRMPISSDLSNPRNFVTKLARYNKVVNIPNSMTVLDEMLPIAIE 591
VE LL+ ++NVCTLR+RMPISSDL+NPRNF+TK++RYNKVV+IPNSMTVLDE+LPI+IE
Sbjct: 521 -VEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIE 579
Query: 592 MARRNCRGAWNFTNPGVISHNEILELYKEYIDPQLKWSNFNLEEQAKVLVAPRSNNHMDV 651
MA+RN RG WNFTNPGV+SHNEILE+YK YI+P KWSNF +EEQAKV+VA RSNN MD
Sbjct: 580 MAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDG 639
Query: 652 TKLKKEFPEVLSIKDSIIKYVLEPNKK 678
+KL KEFPE+LSIK+S++KYV EPNK+
Sbjct: 640 SKLSKEFPEMLSIKESLLKYVFEPNKR 666
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 227/343 (66%), Gaps = 12/343 (3%)
Query: 7 PASYKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFK 66
P S+ K++L+TG AGFI SHV L+++YPDY IV LDKLDYC+SLKNL P N+K
Sbjct: 13 PGSFA-KRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYK 71
Query: 67 FLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKL 126
F++GDI + + L E ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A
Sbjct: 72 FIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYE 131
Query: 127 TGQVKRFIHVSTDEVYGET-DMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGL 185
G V++FI+VSTDEVYG + D E D +P+ PTNPY+++KA AE V +Y Y
Sbjct: 132 AG-VEKFIYVSTDEVYGGSLDQEFDESSPKQ----PTNPYASSKAAAECFVQSYWERYKF 186
Query: 186 PTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVIL 245
P + TR +NVYGP+Q+PEK+IPKFI L ++ IHG+G R++LY ADV EAF +L
Sbjct: 187 PVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVL 246
Query: 246 HRGVIGHVYNVGTKKERSVLDVAADICTLFK-----LEPEKTIHYVQDRPFNDHRYFLDD 300
+G G +YN+GT E SV+ +A ++ L K E E + YV DRP ND RY +
Sbjct: 247 TKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKS 306
Query: 301 QKLKRLGWKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHP 343
+K+ LGWK K PWEEG+K T+EWY+KN H W + AL P P
Sbjct: 307 EKIHSLGWKPKVPWEEGIKKTVEWYRKNFHNWKNAEKALEPFP 349
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 224/337 (66%), Gaps = 11/337 (3%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K++L+TG AGFI SH+ L+++YP+Y I+ LDKLDYC+SLKNL N+KF++GDI
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ + L +E ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A +V++
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 133 FIHVSTDEVYGET-DMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
FI+VSTDEVYG + D E D +P+ PTNPY+++KA AE V +Y Y P + TR
Sbjct: 137 FIYVSTDEVYGGSLDKEFDESSPKQ----PTNPYASSKAAAECFVQSYWEQYKFPVVITR 192
Query: 192 GNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIG 251
+NVYGP+Q+PEK+IPKFI L ++ IHG+G R++LY DV EAF +L +G G
Sbjct: 193 SSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPG 252
Query: 252 HVYNVGTKKERSVLDVAADICTLFK-----LEPEKTIHYVQDRPFNDHRYFLDDQKLKRL 306
+YN+GT E SV+ +A ++ L K E E + YV DRP ND RY + +K+ L
Sbjct: 253 EIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGL 312
Query: 307 GWKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHP 343
GW+ K PW+EG+K T+EWY++N H W +V AL P P
Sbjct: 313 GWRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFP 349
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 222/337 (65%), Gaps = 11/337 (3%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K++L+TG AGFI SH+ L+++YP+Y I+ LDKLDYC+SLKNL N+KF++GDI
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ + L +E ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A +V++
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 133 FIHVSTDEVYGET-DMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTR 191
FI+VSTDEVYG + D E D +P+ PTNPY+++KA AE V +Y Y P + TR
Sbjct: 137 FIYVSTDEVYGGSLDKEFDESSPKQ----PTNPYASSKAAAECFVQSYWEQYKFPVVITR 192
Query: 192 GNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIG 251
+NVYGP+Q+PEK+IPKFI L ++ IHG G R++LY DV EAF +L +G G
Sbjct: 193 SSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPG 252
Query: 252 HVYNVGTKKERSVLDVAADICTLFK-----LEPEKTIHYVQDRPFNDHRYFLDDQKLKRL 306
+YN+GT E SVL +A ++ L K E E + YV DRP ND RY + +K+ L
Sbjct: 253 EIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGL 312
Query: 307 GWKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHP 343
GW+ K PW+EG+K T+EWY++N H W + AL P P
Sbjct: 313 GWRPKVPWKEGIKKTIEWYRENFHNWKNAEKALEPFP 349
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 224/361 (62%), Gaps = 42/361 (11%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+KILITG AGFIGSH+ L K + + +I+ LDKLDYCS++ NL NFKF KG+I
Sbjct: 10 QKILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNI 69
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
++L+ + E ID ++H AA THVDNSF S +FT NNI GTH LLE CK ++K+
Sbjct: 70 LDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCK-NYKLKK 128
Query: 133 FIHVSTDEVYGETDMESDIGNP--------EASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
FI+VSTDEVYG +E + N E S L PTNPYSA+KAGAE LV +Y++S+
Sbjct: 129 FIYVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFK 188
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LP I TR NN+YGP Q+PEK+IPKFI L + ++ IHG G N R+YLY D+ AFD+I
Sbjct: 189 LPVIITRANNIYGPKQYPEKIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIVSAFDII 248
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTL------------------------------ 274
L +G IG+VYN+GT E S LDVA I +
Sbjct: 249 LRKGEIGNVYNIGTDFEISNLDVAKKIINISINLNNNNNNNNNNNNNNNNNNNNNNNNNN 308
Query: 275 --FK-LEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGLKLTLEWYKKNPHW 331
F ++ +K I+Y+ DRPFNDHRY ++ KL LGWK+ WEEG++ T WYK N ++
Sbjct: 309 NDFNIMDYKKFINYIDDRPFNDHRYNINYSKLSNLGWKKSISWEEGIEKTFIWYKNNRNY 368
Query: 332 W 332
W
Sbjct: 369 W 369
>sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R141 PE=3 SV=1
Length = 323
Score = 298 bits (764), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 209/321 (65%), Gaps = 6/321 (1%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K IL+TG GFIGS+ N + Y + I D DYC+S++N+ + + K +KGDI
Sbjct: 2 KNILVTGGLGFIGSNFVNHISSKYDNVNIYVYDIGDYCASVENVEWNNRT---KLIKGDI 58
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
DL+ + L IDTI+HFAA +HVDNSF NS FT N++GTHVLLE ++ G++K
Sbjct: 59 RNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLECSRMYGKLKL 118
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
F H+STDEVYGE D + E S L PTNPY+ATKAGAE +V +Y SY LP I R
Sbjct: 119 FFHMSTDEVYGEIDTTDT--SREVSLLCPTNPYAATKAGAEHIVKSYFLSYKLPIIIARC 176
Query: 193 NNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGH 252
NNVYG NQ+PEKLIPKFI + G++L I G G++ R++++ DVA+A D++++ GVIG
Sbjct: 177 NNVYGRNQYPEKLIPKFICSLLDGKKLHIQGTGNSRRNFIHAIDVADAVDLVINNGVIGE 236
Query: 253 VYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKE-K 311
YN+G E SVLDVA +C + + E + YV DR FND RY + + K+K LGW++ +
Sbjct: 237 TYNIGVTNEHSVLDVAQILCDIAGVNLENQLEYVPDRLFNDFRYNITNDKIKSLGWEQSR 296
Query: 312 TPWEEGLKLTLEWYKKNPHWW 332
+++ L +WYK N H +
Sbjct: 297 KDFKKELVELFDWYKVNRHRY 317
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 201/342 (58%), Gaps = 21/342 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+KIL+TG AGFIGS V +I+N D +V +DKL Y +L++L +P + F + DI
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTRD-AVVNVDKLTYAGNLESLTEVADNPRYAFEQVDI 60
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ--- 129
++ + D +MH AA++HVD S G++ EF NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMP 120
Query: 130 -----VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
RF H+STDEVYG+ D+ E + P++PYSA+KA ++ LV A+ R+YG
Sbjct: 121 SEQHEAFRFHHISTDEVYGDLGGTDDLFT-ETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LPTI T +N YGP FPEKLIP IL A+ G+ LP++G+G +R +L+ D A A +
Sbjct: 180 LPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQV 239
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT---------IHYVQDRPFNDH 294
+ GV+G YN+G E++ ++V IC L +L PEK I +VQDRP +D
Sbjct: 240 VTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDV 299
Query: 295 RYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
RY +D K++R LGW +E GL+ T++WY N WW +V
Sbjct: 300 RYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNV 341
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 198/335 (59%), Gaps = 21/335 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+KIL+TG AGFIGS V +I+N D +V LDKL Y +L++L +P + F + DI
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTQD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 60
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ--- 129
++ + D +MH AA++HVD S G++ EF NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMP 120
Query: 130 -----VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
RF H+STDEVYG+ D+ E + P++PYSA+KA ++ LV A+ R+YG
Sbjct: 121 SEKHEAFRFHHISTDEVYGDLSGTDDLFT-ETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LPTI T +N YGP FPEKLIP IL A+ G+ LP++G+G +R +L+ D A A +
Sbjct: 180 LPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQV 239
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT---------IHYVQDRPFNDH 294
+ GV+G YN+G E++ ++V IC L +L PEK I +VQDRP +D
Sbjct: 240 VTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDA 299
Query: 295 RYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKN 328
RY +D K++R LGW+ +E GL+ T++WY N
Sbjct: 300 RYAVDTAKIRRDLGWQPLETFESGLRKTVQWYLDN 334
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 193/340 (56%), Gaps = 23/340 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KIL+TG AGFIGS V +I N D +V +DKL Y +L++L S + F DI
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADIC 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LTG 128
A M+ + D +MH AA++HVD S F NI GT+VLLEA + L
Sbjct: 61 DAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALND 120
Query: 129 QVK---RFIHVSTDEVYGETDMESDIGNPEASQLL-------PTNPYSATKAGAEMLVMA 178
+ K RF H+STDEVYG+ + N EA L P++PYSA+KA ++ LV A
Sbjct: 121 EKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
+ R+YGLPTI T +N YGP FPEKLIP IL A++G+ LPI+G G +R +LY D A
Sbjct: 181 WKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHA 240
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFK--LEPEKT----IHYVQDRPFN 292
A ++ G G YN+G E+ +DV IC L + EK+ I YV DRP +
Sbjct: 241 RALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGH 300
Query: 293 DHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHW 331
D RY +D K+ R LGWK + +E G++ T+EWY N +W
Sbjct: 301 DRRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNW 340
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 189/342 (55%), Gaps = 21/342 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+KILITG AGFIGS + +I D +V +DKL Y +L +L P S F F K DI
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LT 127
+ + D +MH AA++HVD S F NI GT+ LLEA + LT
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 128 GQVK---RFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
K RF H+STDEVYG+ D E + P++PYSA+KA ++ LV A+ R+YG
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT-ETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LPT+ T +N YGP FPEKLIP IL A+ G+ LP++GNG +R +LY D A A +
Sbjct: 180 LPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCV 239
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEK---------TIHYVQDRPFNDH 294
G +G YN+G ER LDV IC L +L P K I +V DRP +D
Sbjct: 240 ATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGHDL 299
Query: 295 RYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
RY +D K+ R LGW + +E G++ T++WY N WW V
Sbjct: 300 RYAIDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQV 341
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 21/335 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K IL+TG AGFIGS V +I+N D +V LDKL Y +L++L +P + F + DI
Sbjct: 7 KNILVTGGAGFIGSAVVRHIIQNTRD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 65
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ--- 129
++ + D +MH AA++HVD + G++ EF NI GT LLEA + Q
Sbjct: 66 CDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMP 125
Query: 130 -----VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
RF H+STDEVYG+ D+ E + P++PYSA+KA A+ LV A+ R+Y
Sbjct: 126 SEKREAFRFHHISTDEVYGDLHGTDDLFT-ETTPYAPSSPYSASKAAADHLVRAWQRTYR 184
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LP+I + +N YGP QFPEKLIP IL A+ G+ LP++G+G+ +R +L+ D A A +
Sbjct: 185 LPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVYGDGAQIRDWLFVEDHARALYQV 244
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT---------IHYVQDRPFNDH 294
+ GV+G YN+G E++ L+V IC L +L PEK I +VQDRP +D
Sbjct: 245 VTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDA 304
Query: 295 RYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKN 328
RY +D K++R LGW +E GL+ T++WY N
Sbjct: 305 RYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN 339
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 246 bits (628), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 192/344 (55%), Gaps = 23/344 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KIL+TG AGFIGS V +I N D +V +DKL Y + ++L S + F DI
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNRESLADVSDSERYVFEHADIC 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LTG 128
A M + D +MH AA++HVD S F NI GT+VLLEA + L
Sbjct: 61 DAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDS 120
Query: 129 QVK---RFIHVSTDEVYGETDMESDIGNPEASQLL-------PTNPYSATKAGAEMLVMA 178
K RF H+STDEVYG+ ++ N E L P++PYSA+KA ++ LV A
Sbjct: 121 DKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
+ R+YGLPTI T +N YGP FPEKLIP IL A++G+ LPI+G G +R +LY D A
Sbjct: 181 WKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHA 240
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFK--LEPEKT----IHYVQDRPFN 292
A ++ G G YN+G E+ +DV IC L + EK+ I YV DRP +
Sbjct: 241 RALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGH 300
Query: 293 DHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
D RY +D +K+ R LGWK + +E G++ T+EWY N W +V
Sbjct: 301 DRRYAIDAEKIGRALGWKPQETFESGIRKTVEWYLSNTKWVDNV 344
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 246 bits (628), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 193/340 (56%), Gaps = 23/340 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KIL+TG AGFIGS V +I N D +V +DKL Y +L++L S + F DI
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLAEISDSERYSFENADIC 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LTG 128
A+ +D +MH AA++HVD S F NI GT+VLLEA + L
Sbjct: 61 DAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDD 120
Query: 129 QVK---RFIHVSTDEVYGETDMESDIGNPEASQLL-------PTNPYSATKAGAEMLVMA 178
+ K RF H+STDEVYG+ ++ + E QL P++PYSA+KA ++ LV A
Sbjct: 121 EKKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
+ R+YGLPTI + +N YGP FPEKLIP IL A++G+ LPI+G G +R +LY D A
Sbjct: 181 WKRTYGLPTIVSNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHA 240
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFK--LEPEKT----IHYVQDRPFN 292
A ++ G G YN+G E+ +DV IC L + EK+ I YV DRP +
Sbjct: 241 RALYTVVTEGKAGETYNIGGHNEKKNIDVVFTICDLLDEIVPKEKSYREQITYVADRPGH 300
Query: 293 DHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHW 331
D RY +D K+ R LGWK + +E G++ T+EWY N +W
Sbjct: 301 DRRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNW 340
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 190/325 (58%), Gaps = 13/325 (4%)
Query: 14 KILITGAAGFIGSHVTNRLIKN-----YPDYEIVALDKLDYCSSLKNLHPSRASPNFKFL 68
KIL+TG AGFIGSH LI P ++ +DKL Y +L+NL + A P F F+
Sbjct: 2 KILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFV 61
Query: 69 KGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTG 128
+GDI L+ L+ DT+ HFAA+THVD S S F +N+ GT VLL+A L
Sbjct: 62 RGDICDEGLIEGLMARH--DTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAA-LRH 118
Query: 129 QVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTI 188
+ RF+HVSTDEVYG D S E L P +PY+A+KAG+++L +AYH+++G+ +
Sbjct: 119 HIGRFLHVSTDEVYGSIDTGS---WAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVV 175
Query: 189 TTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
TR +N YGP QFPEK+IP F+ + G +P++G+G N+R +L+ +D + L G
Sbjct: 176 VTRCSNNYGPRQFPEKMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAG 235
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
G VY++G E + L++ +I P I +V DR +D RY LD K+ LG
Sbjct: 236 RAGEVYHIGGGWEATNLEL-TEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGELG 294
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWW 332
++ + + +G+ T+ WY+ N WW
Sbjct: 295 YRPRVDFTDGIAETVAWYRANRSWW 319
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 193/344 (56%), Gaps = 23/344 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
KILITG AGFIGS V +IKN D +V +DKL Y +L++L S + F DI
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK----LTGQ 129
+ + + D +MH AA++HVD S F NI GT+ LLE + G+
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 130 VK----RFIHVSTDEVYGETDMESDIGNP-------EASQLLPTNPYSATKAGAEMLVMA 178
K RF H+STDEVYG+ ++ N E + P++PYSA+KA ++ LV A
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVA 238
+ R+YGLPTI T +N YGP FPEKLIP IL A++G+ LPI+G G +R +LY D A
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240
Query: 239 EAFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT-----IHYVQDRPFN 292
A +++ G G YN+G E+ LDV IC L ++ P+ T I YV DRP +
Sbjct: 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGH 300
Query: 293 DHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGDV 335
D RY +D K+ R LGWK +E G++ T+EWY N W +V
Sbjct: 301 DRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNV 344
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 179/333 (53%), Gaps = 21/333 (6%)
Query: 16 LITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITCA 75
L+TG AGFIG + + +V LD L Y +L L + + F+KGDI
Sbjct: 5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDG 62
Query: 76 DLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK--------LT 127
L+ LL D +++FAA++HVD S F N+ GT LLEA +
Sbjct: 63 ALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTR 122
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPT 187
RF+HVSTDEVYG E + P +PYSA+KA ++ LV A+H +YGLP
Sbjct: 123 RDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 188 ITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
+TT +N YGP FPEKLIP I A+ G+ LP++G+G VR +L+ +D EA +L +
Sbjct: 181 LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK 240
Query: 248 GVIGHVYNVGTKKERSVLDVAADICTLF-KLEP-------EKTIHYVQDRPFNDHRYFLD 299
G +G YNVG ER ++V IC L + P E I YV DRP +D RY +D
Sbjct: 241 GRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAID 300
Query: 300 DQKLK-RLGWKEKTPWEEGLKLTLEWYKKNPHW 331
KLK LGW+ +E+G+ LT++WY N W
Sbjct: 301 ASKLKDELGWEPAYTFEQGIALTVDWYLTNQTW 333
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 191/317 (60%), Gaps = 7/317 (2%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K LITG AGFIG T +++ D I LDKL Y S + + + + F+F+KGDI
Sbjct: 3 KSYLITGGAGFIGLTFTKLMLRE-TDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDI 61
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ + ++ E D ++HFAA++HVD S + F N+ GT+ L EA L G+ K+
Sbjct: 62 SVQEDIDRAF-DETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAV-LKGKAKK 119
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
IH+STDEVYG+ + D E + L P NPYSA+KA +++LV++Y +++ LP I TR
Sbjct: 120 LIHISTDEVYGDLKAD-DPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRC 178
Query: 193 NNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGH 252
+N YGP Q EK+IP I A +G +P++G+G +R +L+ D A +IL +G G
Sbjct: 179 SNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLILEKGTDGE 238
Query: 253 VYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLGWKEK 311
VYN+G ER+ ++A+ I L L E+ +V+DR +D RY ++ KLK LGW+++
Sbjct: 239 VYNIGGGNERTNKELASVI--LKHLGCEELFAHVEDRKGHDRRYAINASKLKNELGWRQE 296
Query: 312 TPWEEGLKLTLEWYKKN 328
+EEG+ T++WY N
Sbjct: 297 VTFEEGIARTIQWYTDN 313
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 229 bits (585), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 192/335 (57%), Gaps = 21/335 (6%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
+IL+TG AGFIGS + L+ + E++ +DKL Y +L +L P N++FL+ DI
Sbjct: 2 RILVTGGAGFIGSALVRYLVS--INAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADIC 59
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-----LTG 128
+N + D ++H AA++HVD S + +F N+ GT +LE + L+
Sbjct: 60 DRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQ 119
Query: 129 QVKRF---IHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLVMAYHRSYG 184
K F +HVSTDEVYG D G E S P++PYSA+KA ++ A+ R+YG
Sbjct: 120 NRKAFFKMLHVSTDEVYGSL---GDRGQFEEVSPYDPSSPYSASKAASDHFATAWQRTYG 176
Query: 185 LPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVI 244
LP + + +N YGP FPEKLIP IL A+ + LP++G GSN+R +LY D A A +I
Sbjct: 177 LPVVISNCSNNYGPFHFPEKLIPLMILNALDRKPLPVYGTGSNIRDWLYVDDHARALWLI 236
Query: 245 LHRGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKT-----IHYVQDRPFNDHRYFL 298
+ G G YNVG + E +DV IC L +L P + I +V+DRP +D RY +
Sbjct: 237 VREGRPGEKYNVGGRNELRNIDVVNRICLLLDELSPNASHYGDLITFVKDRPGHDARYAI 296
Query: 299 DDQKLK-RLGWKEKTPWEEGLKLTLEWYKKNPHWW 332
D KL+ LGWK + ++ G++ T+EWY +N WW
Sbjct: 297 DATKLETELGWKAQENFDTGIRKTVEWYLENGWWW 331
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 178/333 (53%), Gaps = 21/333 (6%)
Query: 16 LITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITCA 75
L+TG AGFIG + + +V LD L Y +L L + + F+KGDI
Sbjct: 5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDG 62
Query: 76 DLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK--------LT 127
L+ LL D +++FAA++HVD S F N+ GT LLEA +
Sbjct: 63 ALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTR 122
Query: 128 GQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPT 187
RF+HVSTDEVYG E + P +PYSA+KA ++ LV A+H +YGLP
Sbjct: 123 RDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 188 ITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR 247
+TT +N YGP FPEKLIP I A+ G+ LP++G+G VR +L+ +D EA +L +
Sbjct: 181 LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK 240
Query: 248 GVIGHVYNVGTKKERSVLDVAADICTLF-KLEP-------EKTIHYVQDRPFNDHRYFLD 299
G +G YNVG ER ++V IC L + P E I YV DRP +D RY +D
Sbjct: 241 GRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAID 300
Query: 300 DQKLK-RLGWKEKTPWEEGLKLTLEWYKKNPHW 331
KLK LGW+ +E+G+ T++WY N W
Sbjct: 301 ASKLKDELGWEPAYTFEQGIAQTVDWYLTNQTW 333
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 179/321 (55%), Gaps = 11/321 (3%)
Query: 15 ILITGAAGFIGSHVTNRLIK--NYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
+L+TGAAGFIGS L+ PD + ALD L Y + NL R P ++F +GDI
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
A V G D ++H AA++HVD S ++ F N++GT LL+A G V
Sbjct: 65 CDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VAS 120
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
F+ VSTDEVYG + S E L P +PYSA+KA ++L +A+H S+GL TR
Sbjct: 121 FVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRC 177
Query: 193 NNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGH 252
+N YGP QFPEKLIP+FI L M G ++P++G+G NVR +L+ D + + RG G
Sbjct: 178 SNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAGR 237
Query: 253 VYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR-LGWKEK 311
VYN+G S ++ + + ++ YV+DR +D RY +D +++R LG+
Sbjct: 238 VYNIGGGATLSNKELVGLLLEAAGAD-WGSVEYVEDRKGHDRRYAVDSTRIQRELGFAPA 296
Query: 312 TPWEEGLKLTLEWYKKNPHWW 332
+GL T+ WY K+ WW
Sbjct: 297 VDLADGLAATVAWYHKHRSWW 317
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 188/330 (56%), Gaps = 21/330 (6%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG +GFIGS + +I + D+ ++ +DKL Y ++ L +P + F K DI
Sbjct: 4 ILVTGGSGFIGSALIRYIINHTQDF-VINIDKLTYAANQSALREVENNPRYVFEKVDICD 62
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK--------L 126
+++ + D +MH AA++HVD S + +F NI GT+ LLE K
Sbjct: 63 LNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEA 122
Query: 127 TGQVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLP 186
RF H+STDEVYG+ + S+ E S P++PYSA+KA + LV A+HR+YGLP
Sbjct: 123 KKTTFRFHHISTDEVYGDLSL-SEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLP 181
Query: 187 TITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILH 246
I T +N YG Q EKLIP I A+ G+ LPI+G+G +R +L+ D +A ++L
Sbjct: 182 VIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYLVLT 241
Query: 247 RGVIGHVYNVGTKKERSVLDVAADICTLF-KLEPEKTIH---------YVQDRPFNDHRY 296
+G +G YN+G E++ L+V IC L +L P K H +V+DRP +D RY
Sbjct: 242 KGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNHIKYYEDLMTFVKDRPGHDVRY 301
Query: 297 FLDDQKL-KRLGWKEKTPWEEGLKLTLEWY 325
LD K+ LGW+ + +E+GL+ T++WY
Sbjct: 302 SLDCSKIHAELGWQPQITFEQGLRQTVKWY 331
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 188/321 (58%), Gaps = 9/321 (2%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
++L+TG AGFIG++ + ++ +PD + LD L Y ++L + + ++GDIT
Sbjct: 2 RLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESL--ADVEDAIRLVQGDIT 59
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
A+L++ L+ D ++HFAA++HVDN+ N F + N+ GT +LEA + G R
Sbjct: 60 DAELVSQLVAES--DAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHG--VRL 115
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
H+STDEVYG+ +++ E++ P++PYSATKAGA+MLV A+ RSYG+ + +
Sbjct: 116 HHISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCS 175
Query: 194 NVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
N YGP Q EK IP+ I + G++ ++G G+NVR +++ D A IL RG IG
Sbjct: 176 NNYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVRRILDRGRIGRT 235
Query: 254 YNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKL-KRLGWKEK- 311
Y + ++ ER L V + L +P+ H V DR +D RY +D L L W K
Sbjct: 236 YLISSEGERDNLTVLRTLLRLMDRDPDDFDH-VTDRVGHDLRYAIDPSTLYDELCWAPKH 294
Query: 312 TPWEEGLKLTLEWYKKNPHWW 332
T +EEGL+ T++WY+ N WW
Sbjct: 295 TDFEEGLRTTIDWYRDNESWW 315
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 185/321 (57%), Gaps = 9/321 (2%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
++L+TG AGFIG++ + ++ I LD L Y S ++L P + + ++GDIT
Sbjct: 2 RLLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAP--VADRIRLVQGDIT 59
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
A L+ L+ D ++HFAA+THVDN+ + F ++N+ GT+ +LEA + R
Sbjct: 60 DAALVGDLVAES--DAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVRR--HNVRL 115
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
HVSTDEVYG+ ++++ E + P++PYS+TKA A++LV A+ RSYG+ + +
Sbjct: 116 HHVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRAWVRSYGVRATISNCS 175
Query: 194 NVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVIGHV 253
N YGP Q EK IP+ I + G++ ++G G+NVR +++ D A IL G IG
Sbjct: 176 NNYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVWRILTDGTIGRT 235
Query: 254 YNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLGWKEK- 311
Y +G + ER+ L V I L +P+ H V DR +D RY +D L+ LGW K
Sbjct: 236 YLIGAECERNNLTVMRTILKLMGRDPDDFDH-VTDRAGHDLRYAIDPSTLQDELGWAPKH 294
Query: 312 TPWEEGLKLTLEWYKKNPHWW 332
T +E GL T++WY+ N WW
Sbjct: 295 TDFEAGLTDTIDWYRANESWW 315
>sp|Q9HDU4|YHEB_SCHPO Uncharacterized protein PB2B2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPB2B2.11 PE=3 SV=1
Length = 365
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 191/357 (53%), Gaps = 51/357 (14%)
Query: 16 LITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRA--SPNFKFLKGDIT 73
LITG AGFIGS+ + + YPD+ +DKL Y S+ + S+ PNF+FL+ D+
Sbjct: 13 LITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLA 72
Query: 74 C--ADLMNYLLVSEGIDTIMH---FAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACK-LT 127
L +++ I+ I H FAA++ VD SF + FT NNI T LLE + L
Sbjct: 73 TNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQNLLECVRILL 132
Query: 128 GQVKR------FIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHR 181
G+ + F+HVSTDEVYGE D + + E S+L PT+PY+A+KA ++++ +Y
Sbjct: 133 GKKEELRNRLNFVHVSTDEVYGEQDENASVD--EKSKLNPTSPYAASKAAVDLIIQSYRY 190
Query: 182 SYGLPTITTRGNNVYGPNQFPEKLIP-------KFILLAMKGQ-----QLPIHGNGSNVR 229
SY + R NNVYGP Q+ EKLIP KFI K Q ++ +HG+G + R
Sbjct: 191 SYKISVTVIRANNVYGPRQYEEKLIPMTLGKLKKFI--NQKSQKIMQDKITLHGDGLHKR 248
Query: 230 SYLYCADVAEAFDVI------------LHRGVIGHVYNVGTKKERSVLDVAADICTLF-- 275
YL+ D A D++ L + G ++N+G+ E L + IC F
Sbjct: 249 KYLHIYDFINAIDLVWMKQGSEVYHSTLESKMSGQIFNIGSDDEIDNLSLVKFICDYFLY 308
Query: 276 ------KLEPEKTIHYVQDRPFNDHRYFLDDQKLKRLGWKEKTPWEEGL-KLTLEWY 325
L+ K I +VQDR +ND RY L+ +K+K LGW+ + P E GL KL E+Y
Sbjct: 309 RKLSLKNLDYSKYITFVQDRNYNDSRYSLNYEKIKSLGWRPQIPLETGLRKLIDEYY 365
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 186/331 (56%), Gaps = 17/331 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K I++TG AGFIGS+ + + N+PD + LDKL Y + NL + + GDI
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDI 63
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
++L++ L D I+H+AA++H DNS + F N GT++LLEA + R
Sbjct: 64 ADSELVDKLAAK--ADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDI--R 119
Query: 133 FIHVSTDEVYGETDMESDI-GNPEA--------SQLLPTNPYSATKAGAEMLVMAYHRSY 183
F HVSTDEVYG+ + D+ G+ E ++ P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 184 GLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDV 243
G+ + +N YGP Q EK IP+ I + G + ++G G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 244 ILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKL 303
IL +G IG Y +G E++ +V I +P+ +V DR +D RY +D KL
Sbjct: 240 ILTKGRIGETYLIGADGEKNNKEVLELILEKMS-QPKNAYDHVTDRAGHDLRYAIDSTKL 298
Query: 304 K-RLGWKEK-TPWEEGLKLTLEWYKKNPHWW 332
+ LGWK + T +EEGL+ T++WY ++ WW
Sbjct: 299 REELGWKPQFTNFEEGLEDTIKWYTEHEDWW 329
>sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L780 PE=4 SV=1
Length = 289
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 31/307 (10%)
Query: 372 LKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGRLEDKNSLLDDMKRVRPTHVLNAAGIT- 430
+K+LI+G GWIG ++ K + +G R +D++++ ++ ++P V++ G T
Sbjct: 1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60
Query: 431 --GRPNVDWCES--HRVETIRTNVMGTLTLADVCKEKNVLLMNFATGCIYEYDSMHPQGS 486
G +D+ E VE ++ N+ G L LA +C++ N+ L TGCI+E + +
Sbjct: 61 GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQN-NFSAD 119
Query: 487 SIGFKEDDEPNFTRSFYSKTKAMVTFLSYLEIFVLVICIECLINFQVEGLLKAYEN-VCT 545
GF E+D+PNF S YS K + L+ ++N V
Sbjct: 120 EKGFTENDKPNFFGSSYSVVKGFT-----------------------DRLMHFFDNDVLN 156
Query: 546 LRLRMPISSDLSNPRNFVTKLARYNKVVNIPNSMTVLDEMLPIAIEMARRNCRGAWNFTN 605
LR+RMPI+ + NPR+F+TK+ Y+++ +IPNSMT+LD+M+P+ I+MAR G +NFTN
Sbjct: 157 LRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTN 215
Query: 606 PGVISHNEILELYKEYIDPQLKWSNFNLEEQAKVLVAPRSNNHMDVTKLKKEFPEVLSIK 665
PG++SHNEIL L ++ P L W N + E+Q +L A RSNN ++ KL+ +P+V I
Sbjct: 216 PGLVSHNEILSLIRDIHKPNLTWENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDIL 275
Query: 666 DSIIKYV 672
I + V
Sbjct: 276 TGIREVV 282
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 135/264 (51%), Gaps = 15/264 (5%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL----DYCSSLKNLHPSRASPNFKFLK 69
KIL+TGAAGFIGSH+ L+K+ + ++ +D + LKNL F F+K
Sbjct: 2 KILVTGAAGFIGSHLCEELLKD-KKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFE-FTNNNIYGTHVLLEACKLTG 128
++ ADL + L EG+D I H AA V +S+GN F + +NI LLEAC+
Sbjct: 61 ENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EH 116
Query: 129 QVKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTI 188
++ F+ ST VYGE + E + L P +PY TK E L Y +S+G+P +
Sbjct: 117 SIQTFVFASTSSVYGEKQGKVS----ENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIV 172
Query: 189 TTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR- 247
R VYGP Q P+ + I ++ + L I G+G R + Y +D + +L +
Sbjct: 173 ILRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 248 GVIGHVYNVGTKKERSVLDVAADI 271
+IG N+G + SVL V + I
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLI 256
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 162/320 (50%), Gaps = 25/320 (7%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG AGFIGSH+ ++LI+N +Y+++ LD L + KN +P +F+ DI
Sbjct: 2 ILVTGGAGFIGSHIVDKLIEN--NYDVIILDNL--TTGNKN----NINPKAEFVNADIRD 53
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
DL + + ++ ++H AAQ +V NS N + N+ GT +LE + K
Sbjct: 54 KDLDEKINFKD-VEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVF 112
Query: 135 HVSTDEVYGETD-MESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
S VYGE + + D +P + P +PY +K E + Y+R YG+ R +
Sbjct: 113 ASSGGAVYGEPNYLPVDENHP----INPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYS 168
Query: 194 NVYGPNQFPEK---LIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVI 250
NVYG Q P+ +I FI +K Q I G+G+ R ++Y DVA+A + L+
Sbjct: 169 NVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWK-- 226
Query: 251 GHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFND--HRYFLDDQKLKRLGW 308
+ N+GT KE SV ++ + K E + D+P +R +LD +K + LGW
Sbjct: 227 NEIVNIGTGKETSV----NELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKAESLGW 282
Query: 309 KEKTPWEEGLKLTLEWYKKN 328
K + +EG+K + W K N
Sbjct: 283 KPEIDLKEGIKRVVNWMKNN 302
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 153/325 (47%), Gaps = 21/325 (6%)
Query: 10 YKPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLK 69
+K K + +TG G +GS++ LI+ + + D + NL+ ++
Sbjct: 4 WKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQS----NLYQGEHIKKMNIVR 59
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
G + ++ L IDT+ H AAQ V + N NI GT +LEAC+
Sbjct: 60 GSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPL 119
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTIT 189
+KR I S+D+ YG+ + ++ E L +PY +K+ A+++ Y +YGLP
Sbjct: 120 IKRVIVASSDKAYGD---QENLPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCI 176
Query: 190 TRGNNVYGPNQFP-EKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHR- 247
TR N+YG ++IP+ I L + G+ I +G+ VR Y Y D +A+ ++ +
Sbjct: 177 TRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKM 236
Query: 248 ---GVIGHVYNVGTKKERSVLDVAADICTLF--KLEPEKTIHYVQDRPFND--HRYFLDD 300
+ G +N + + +VL++ I L+P+ V ++ N+ H+Y +
Sbjct: 237 EENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPK-----VLNQGSNEIKHQYLSAE 291
Query: 301 QKLKRLGWKEKTPWEEGLKLTLEWY 325
+ K L W +EGL+ T+EWY
Sbjct: 292 KARKLLNWTPAYTIDEGLEKTIEWY 316
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 20/320 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 90 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 146
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 147 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 197
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 198 LLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 257
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+QL ++G+G R++ Y +D+ +++
Sbjct: 258 RIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSN 317
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E S++ A I L E I ++ + + R D +K K LG
Sbjct: 318 VSSPV-NLGNPQEHSIVQFARLIKQLVGSGGE--ISFLSEAQDDPQRRKPDIRKAKLLLG 374
Query: 308 WKEKTPWEEGLKLTLEWYKK 327
W+ P EEGL T+ +++K
Sbjct: 375 WEPVVPLEEGLNKTIHYFRK 394
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 149/318 (46%), Gaps = 15/318 (4%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
+ L+TGAAGFIGS + +RL+ + + +V LD L +NLH + S F+F+K DI
Sbjct: 2 RTLVTGAAGFIGSTLVDRLLAD--GHGVVGLDDLS-SGRAENLHSAENSDKFEFVKADIV 58
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
ADL LL + I H AAQ V S + N+ GT L EA +L G V++
Sbjct: 59 DADLTG-LLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAG-VRKV 116
Query: 134 IHVSTD-EVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRG 192
+H S+ VYG E + P +PY+A K E+ + Y Y L
Sbjct: 117 VHTSSGGSVYGTPPAYP---TSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAP 173
Query: 193 NNVYGPNQFPE---KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGV 249
NVYGP Q P ++ F + G+ I G+GS+ R Y++ DV +AF
Sbjct: 174 ANVYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAGGPAG 233
Query: 250 IGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR-LGW 308
G +NVGT E S ++ I E H R + R LD+ + + LGW
Sbjct: 234 GGQRFNVGTGVETSTRELHTAIAGAVGAPDEPEFH--PPRLGDLRRSRLDNTRAREVLGW 291
Query: 309 KEKTPWEEGLKLTLEWYK 326
+ + EG+ T+E+++
Sbjct: 292 QPQVALAEGIAKTVEFFR 309
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 12/327 (3%)
Query: 11 KPKKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLD--YCSSLKNLHPS--RASPNFK 66
K K IL+TG+AGFIG H++ L+ NY D +++ +D L+ Y LK + N+
Sbjct: 2 KYKNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYT 61
Query: 67 FLKGDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKL 126
F+K D + D + L + ID I+H AQ V S N + + +N GT + E +
Sbjct: 62 FIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFAR- 120
Query: 127 TGQVKRFIHVSTDEVYGETDMESDIGNPEASQL-LPTNPYSATKAGAEMLVMAYHRSYGL 185
+++ ++ S+ VYG I E ++ P + Y++TK E++ YH YG+
Sbjct: 121 RFDIEKVVYASSSSVYGGN---RKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGI 177
Query: 186 PTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVIL 245
I R VYG P+ KF + G+++ ++ G+ R + Y +DV + +
Sbjct: 178 KMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAI 237
Query: 246 HRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLKR 305
+ ++N+G K ++ I + +K +QD R + D K ++
Sbjct: 238 KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDV--LRTYADLSKSEK 295
Query: 306 -LGWKEKTPWEEGLKLTLEWYKKNPHW 331
LG+K K EEGLK W+ +N W
Sbjct: 296 LLGYKPKVTIEEGLKRFCNWFLENKDW 322
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 20/339 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 146 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 317 VSSPV-NLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVI 346
W+ P EEGL + +++K + + P P+ I
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARI 412
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 20/339 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 146 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 317 VSSPV-NLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVI 346
W+ P EEGL + +++K + + P P+ I
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARI 412
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 20/339 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 146 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 317 VSSPV-NLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVI 346
W+ P EEGL + +++K + + P P+ +
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARV 412
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 20/339 (5%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 146 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 133 FIHVSTDEVYGETDM--ESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ +S+ + + P Y K AE + AY + G+
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +GP +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
V V N+G +E ++L+ A I L E I ++ + + + D +K K LG
Sbjct: 317 VSSPV-NLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WKEKTPWEEGLKLTLEWYKKNPHWWGDVTGALCPHPSVI 346
W+ P EEGL + +++K + + P P+ +
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARV 412
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 20/320 (6%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDI 72
K+ILITG AGF+GSH+T++L+ + +E+ +D + +N+ NF+ + D+
Sbjct: 87 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 143
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
+ +D I H A+ N N + N GT +L K G R
Sbjct: 144 VEPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 194
Query: 133 FIHVSTDEVYGETDMESDIGN--PEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ ST EVYG+ ++ + + + P Y K AE + AY + G+
Sbjct: 195 LLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 254
Query: 191 RGNNVYGPNQFPE--KLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRG 248
R N +G +++ FIL A++G+ L ++G+GS R++ Y +D+ +++
Sbjct: 255 RIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSN 314
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
+ V N+G +E ++L+ A I +L + I ++ + + R D +K K LG
Sbjct: 315 ISSPV-NLGNPEEHTILEFAQLIKSL--VASRSHIQFLPEAQDDPQRRRPDIRKAKLLLG 371
Query: 308 WKEKTPWEEGLKLTLEWYKK 327
W+ P EEGL T++++ +
Sbjct: 372 WEPVVPLEEGLNKTIQYFSR 391
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N ++++ LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI LM +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K FI S+ VYG+ + + P + P +PY +K E ++ +A
Sbjct: 117 KNFIFSSSATVYGDQPKIPYVESFPTGT---PQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + L I GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K + H
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGV--HIYNLGAGVGNSVLDV----VNAFSKACGKPVNYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3
SV=1
Length = 334
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 157/340 (46%), Gaps = 38/340 (11%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDITC 74
IL+TG AG+IGSH L++ +++ LD +L+ H S + F GDI
Sbjct: 3 ILVTGGAGYIGSHTVLFLLEQ--GEQVIVLD------NLQKGHAGALS-DVTFYHGDIRD 53
Query: 75 ADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRFI 134
L++ + + IDT++HFAA + V S E+ NN+ GTH LL+ L VK+ +
Sbjct: 54 DQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKM-LEHDVKKIV 112
Query: 135 HVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGNN 194
ST YGE I E+ +PTNPY TK E + +YGL + R N
Sbjct: 113 FSSTAATYGEP---VQIPIQESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYVCLRYFN 169
Query: 195 VYG--PN------QFPEK-LIPKFILLAM-KGQQLPIHG------NGSNVRSYLYCADVA 238
G PN PE LIP + +A+ + +++ I G +GS +R Y++ D+A
Sbjct: 170 AAGADPNGRIGEDHSPESHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLA 229
Query: 239 EAFDVI---LHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHR 295
A + L + +N+G K SV +V ++C P + R D
Sbjct: 230 NAHYLACEHLRKDGQSGSFNLGNGKGFSVKEV-IEVCRQVTGHPIPA--EIAPRRSGDPA 286
Query: 296 YFLDDQKLKR--LGWKEKTP-WEEGLKLTLEWYKKNPHWW 332
+ + + LGW+ K P E ++ W+K++PH +
Sbjct: 287 SLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGY 326
>sp|Q9F7D4|GALE_YERPE UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1
Length = 338
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 150/348 (43%), Gaps = 40/348 (11%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKL--DYCSSLKNLHPSRASPNFKFLKGDI 72
+L+TG +G+IGSH +LI+ Y+ V LD L S L +H S + GDI
Sbjct: 3 VLVTGGSGYIGSHTCVQLIEA--GYKPVILDNLCNSKSSVLARIH-SLTGYTPELYAGDI 59
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
L++ + + I ++HFA V S E+ NNN++GT VLLEA + QVK
Sbjct: 60 RDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMR-AAQVKN 118
Query: 133 FIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAE--------------MLVM 177
I S+ VYG+ + + P S P++PY +K E M ++
Sbjct: 119 LIFSSSATVYGDQPQIPYVESFPTGS---PSSPYGRSKLMVEQILQDVQLADPQWNMTIL 175
Query: 178 AYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRS 230
Y G G + P P L+P +A+ + + L I GN G+ VR
Sbjct: 176 RYFNPVGAHPSGLMGED---PQGIPNNLMPFIAQVAVGRRESLAIFGNGYPTPDGTGVRD 232
Query: 231 YLYCADVAE---AFDVILHRGVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQ 287
Y++ D+A+ A LH H++N+G SVL V A H+
Sbjct: 233 YIHVVDLADGHVAAMKTLHGKPGVHIFNLGAGVGHSVLQVVAAFSK--ACGKPLAYHFAP 290
Query: 288 DRPFNDHRYFLDDQK-LKRLGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
R + Y+ D K ++LGW+ +E T W KNP + D
Sbjct: 291 RREGDLPAYWADATKAAEQLGWRVSRSLDEMAADTWHWQSKNPQGYPD 338
>sp|Q59678|GALE_PASHA UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3
SV=1
Length = 338
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 162/357 (45%), Gaps = 62/357 (17%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCS--SLKNLHPSRASPNFKFLKGDI 72
IL+TG AG+IGSH L+ + EIV LD L S SL+ + + KF +GDI
Sbjct: 3 ILVTGGAGYIGSHTLVELLNE--NREIVVLDNLSNSSEVSLERVK-QITGKSVKFYQGDI 59
Query: 73 TCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKR 132
D++ + I++++HFA V + N + NN+ G+ VL+E L V
Sbjct: 60 LDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEM-LKANVNT 118
Query: 133 FIHVSTDEVYGETDMESDIGNPEASQLLP----------TNPYSATKAGAEMLVMAYHRS 182
+ S+ VYG+ Q++P TNPY +K E ++ ++
Sbjct: 119 IVFSSSATVYGD------------PQIIPIVESCPVGGTTNPYGTSKYMVERILEDTVKA 166
Query: 183 Y-GLPTITTRGNNVYG----------PNQFPEKLIPKFILLAMKGQ--QLPIHG------ 223
+ L + R N G PN P L+P FI G+ QL + G
Sbjct: 167 FPQLSAVVLRYFNRVGAHESGLIGEDPNGIPNNLMP-FISQVAVGKLPQLSVFGGDYNTH 225
Query: 224 NGSNVRSYLYCADVA----EAFDVILHRGVIG-HVYNVGTKKERSVLDVAADICTLFKLE 278
+G+ VR Y++ D+A +A D H+ G HVYN+GT SVL D+ F+
Sbjct: 226 DGTGVRDYIHVVDLALGHLKALD--KHQNDAGFHVYNLGTGTGYSVL----DMVKAFEAA 279
Query: 279 PEKTIHY--VQDRPFNDHRYFLDDQK-LKRLGWKEKTPWEEGLKLTLEWYKKNPHWW 332
TI Y V RP + + QK L++LGW+ + E+ +K T W K NP+ +
Sbjct: 280 NGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPNGY 336
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N +++V LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI L+ +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K I S+ VYG+ + + P + P +PY +K E ++ +A
Sbjct: 117 KNLIFSSSATVYGDQPKIPYVESFPTGT---PQSPYGKSKLMVEQILTDLQKAQPEWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + + L + GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K I H
Sbjct: 234 IHVMDLADGHVVAMEKLADKSGV--HIYNLGAGVGSSVLDV----VNAFSKACGKPINYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYSD 338
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 29/334 (8%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLD--YCSSLK-NLHPSRASPNFKFLKG 70
KILITG AGFIGSH+ +LIK + ++ +D ++ Y SLK + S NF F K
Sbjct: 2 KILITGTAGFIGSHLAKKLIKQ--GHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKV 59
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
+ D ++ + V E + +++ AAQ V S N + ++NI G +LE C +
Sbjct: 60 KLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILE-CSRHFNI 118
Query: 131 KRFIHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
+ I+ S+ VYG + + P + Y+ATK E++ Y Y LPT
Sbjct: 119 QNLIYASSSSVYGANTSKPFSTSDNIDH--PLSLYAATKKSNELMAHTYSHLYNLPTTGL 176
Query: 191 RGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDVILHRGVI 250
R VYGP P+ + KF + Q + ++ +G+ +R + Y D+ EA ++ +
Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKPAS 236
Query: 251 GH------------------VYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFN 292
+ VYN+G +++ I KL E +Y+ +P +
Sbjct: 237 PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIEN--KLGKEARKNYMDLQPGD 294
Query: 293 DHRYFLD-DQKLKRLGWKEKTPWEEGLKLTLEWY 325
+ + D + + +K +T ++G+ ++WY
Sbjct: 295 VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWY 328
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 47/344 (13%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLD--YCSSLKNLHPSR-ASPNFKFLKG 70
K L+TGAAGFIG HV+ RL++ +++V +D L+ Y SLK A P F+F K
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLE--AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
D+ + M L S + + + V S N + ++N+ G +LE C+ ++
Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR-HNKI 118
Query: 131 KRFIHVSTDEVYG-------ETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSY 183
+ ++ S+ VYG TD D P + Y+ATK E++ Y Y
Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVD---------HPVSLYAATKKANELMAHTYSHLY 169
Query: 184 GLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGQQLPIHGNGSNVRSYLYCADVAEAFDV 243
GLP R VYGP P+ + KF ++G+ + ++ G R + Y D+AEA +
Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA--I 227
Query: 244 ILHRGVIGH--------------------VYNVGTKKERSVLDVAADICTLFKLEPEKTI 283
I + VI H VYN+G ++D + +E +K +
Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287
Query: 284 HYVQDRPFNDHRYFLDDQKL-KRLGWKEKTPWEEGLKLTLEWYK 326
+Q P + D + L + +G+ +T ++G+K + WY+
Sbjct: 288 LPLQ--PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 44/351 (12%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLKG 70
++L+TG +G+IGSH +L++N +++V LD L C+S +++ P + F++G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 71 DITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQV 130
DI L+ +L IDT++HFA V S E+ +NN+ GT L+ A + V
Sbjct: 58 DIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMR-AANV 116
Query: 131 KRFIHVSTDEVYGETDMESDIGN-PEASQLLPTNPYSATKAGAEMLV-----------MA 178
K I S+ VYG+ + + P + P +PY +K E ++ +A
Sbjct: 117 KNLIFSSSATVYGDQPKIPYVESFPTGT---PQSPYGKSKLMVEQILTDLQKAQPEWSIA 173
Query: 179 YHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHGN------GSNVRSY 231
R + G+ P P L+P +A+ + + L + GN G+ VR Y
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDY 233
Query: 232 LYCADVAEAFDVILHR-----GVIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTI--H 284
++ D+A+ V + + GV H+YN+G SVLDV F K I H
Sbjct: 234 IHVMDLADGHVVAMEKLADKSGV--HIYNLGAGVGSSVLDV----VNAFSKACGKPINYH 287
Query: 285 YVQDRPFNDHRYFLDDQKLKR-LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
+ R + Y+ D K R L W+ +E + T W ++P + D
Sbjct: 288 FAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|P56985|GALE_NEIMB UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=galE PE=3 SV=1
Length = 339
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 52/356 (14%)
Query: 13 KKILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHP---SRASPNFKFLK 69
KKIL+TG GFIGSH L+K+ +++V LD L C+S N+ P + F +
Sbjct: 2 KKILVTGGTGFIGSHTVVSLLKS--GHQVVILDNL--CNSSINILPRLKTITGQEIPFYQ 57
Query: 70 GDITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQ 129
GDI +++ + ID+++HFA V S ++ +NN+ G+ VL E G
Sbjct: 58 GDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAG- 116
Query: 130 VKRFIHVSTDEVYGETDMESDIGNPEASQLLP----TNPYSATKAGAE------------ 173
V + S+ VYG D G ++ +P T+PY A+K+ E
Sbjct: 117 VFSIVFSSSATVYG------DPGKVPYTEDMPPGDTTSPYGASKSMVERILTDIQKADPR 170
Query: 174 --MLVMAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAM-KGQQLPIHG------N 224
M+++ Y G G PN P L+P +A K QL + G +
Sbjct: 171 WSMILLRYFNPIGAHESGLIGEQ---PNGIPNNLLPYICQVAAGKLPQLAVFGDDYPTPD 227
Query: 225 GSNVRSYLYCADVAEAFDVILH--RGVIG-HVYNVGTKKERSVLDVAADICTLFKLEPEK 281
G+ +R Y++ D+AE + V G H+ N+G+ + SVL +I F+
Sbjct: 228 GTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVL----EIIRAFEAASGL 283
Query: 282 TIHY-VQDRPFNDHRYFLDDQKLKR--LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
TI Y V+ R D F D + +GW+ + + ++ + W NP+ + D
Sbjct: 284 TIPYEVKPRRAGDLACFYADPSYTKAQIGWQTQRDLTQMMEDSWRWVSNNPNGYDD 339
>sp|Q9CNY5|GALE_PASMU UDP-glucose 4-epimerase OS=Pasteurella multocida (strain Pm70)
GN=galE PE=3 SV=1
Length = 338
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 159/349 (45%), Gaps = 42/349 (12%)
Query: 15 ILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYC-SSLKNLH--PSRASPNFKFLKGD 71
IL+TG AG+IGSH L+ D +V LD L C SS K+L KF +GD
Sbjct: 3 ILVTGGAGYIGSHTVVELLNANKD--VVVLDNL--CNSSPKSLERVAQITGKQVKFYQGD 58
Query: 72 ITCADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVK 131
I L+ + I +++HFA V S E+ NN+ G+ VL++ K G V
Sbjct: 59 ILDTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAG-VW 117
Query: 132 RFIHVSTDEVYGETDMESDIGNPEASQL-LPTNPYSATKAGAEMLVMAYHRSYGLPTITT 190
F+ S+ VYG+ ++ I E+ ++ TNPY +K E ++ ++ +IT
Sbjct: 118 NFVFSSSATVYGDPEI---IPITESCKVGGTTNPYGTSKFMVEQILKDIAKATPEFSITI 174
Query: 191 -RGNNVYG----------PNQFPEKLIPKFILLAM-KGQQLPIHG------NGSNVRSYL 232
R N G PN P L+P +A+ K QL + G +G+ VR Y+
Sbjct: 175 LRYFNPVGAHESGLIGEDPNGIPNNLLPYISQVAIGKLPQLSVFGSDYETHDGTGVRDYI 234
Query: 233 YCADVA----EAFDVILHRGVIG-HVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQ 287
+ D+A +A D H G G H+YN+GT SVLD+ + K+ K + +
Sbjct: 235 HVVDLAIGHLKALD--RHEGDAGLHIYNLGTGSGYSVLDM---VKAFEKVNDIKIPYKLV 289
Query: 288 DRPFNDHRYFLDDQKLKR--LGWKEKTPWEEGLKLTLEWYKKNPHWWGD 334
DR D D L + L W E+ +K T W KKNP + D
Sbjct: 290 DRRPGDIATCYSDPSLAKTELNWTAARGLEQMMKDTWHWQKKNPKGYRD 338
>sp|Q6T1X6|RMD_ANETH GDP-6-deoxy-D-mannose reductase OS=Aneurinibacillus
thermoaerophilus GN=rmd PE=1 SV=1
Length = 309
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 19/320 (5%)
Query: 14 KILITGAAGFIGSHVTNRLIKNYPDYEIVALDKLDYCSSLKNLHPSRASPNFKFLKGDIT 73
+ LITG AGF+G ++ N L + + E+ + +S N PN + + DI
Sbjct: 2 RALITGVAGFVGKYLANHLTEQ--NVEV-------FGTSRNN---EAKLPNVEMISLDIM 49
Query: 74 CADLMNYLLVSEGIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKLTGQVKRF 133
+ + ++ D I H AA++ V +S+ N + N++GT +L+A + + R
Sbjct: 50 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 109
Query: 134 IHVSTDEVYGETDMESDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGN 193
+ + + E YG + + E +QL P +PY +KA ML Y ++YG+ I TR
Sbjct: 110 LTIGSSEEYGMI-LPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 168
Query: 194 NVYGPNQ----FPEKLIPKFILLAMKGQQLPIH-GNGSNVRSYLYCADVAEAFDVILHRG 248
N GP Q + + + + M+ Q+ I GN VR + D+ +A+ ++ G
Sbjct: 169 NHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG 228
Query: 249 VIGHVYNVGTKKERSVLDVAADICTLFKLEPEKTIHYVQDRPFNDHRYFLDDQKLK-RLG 307
G VYNV + + DV + + ++ + ++ +Q RP +++LK G
Sbjct: 229 KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTG 288
Query: 308 WKEKTPWEEGLKLTLEWYKK 327
WK + P E+ L L+ Y++
Sbjct: 289 WKPRIPLEKSLFEILQSYRQ 308
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 372 LKFLIYGKTGWIGGLLGKYCKDKGIAFEFGTGR---------------LEDKNSLLDDMK 416
++ LI G G++G L + ++ + FGT R + D + +
Sbjct: 1 MRALITGVAGFVGKYLANHLTEQNVEV-FGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 59
Query: 417 RVRPTHVLNAAGITGRPNVDWCESHRVETIRTNVMGTLTLADVCKEKNVLLMNFATGCIY 476
++P ++ + A + + W ++ T TNV GTL + D ++ N+ G
Sbjct: 60 DIKPDYIFHLAAKSSVKD-SWL--NKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 116
Query: 477 EYDSMHPQGSSIGFKEDDEPNFTRSFYSKTKAMVTFLS 514
EY + P+ S + + P S Y +KA V L+
Sbjct: 117 EYGMILPEESPVSEENQLRP---MSPYGVSKASVGMLA 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,852,335
Number of Sequences: 539616
Number of extensions: 11724289
Number of successful extensions: 27216
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 26429
Number of HSP's gapped (non-prelim): 693
length of query: 684
length of database: 191,569,459
effective HSP length: 124
effective length of query: 560
effective length of database: 124,657,075
effective search space: 69807962000
effective search space used: 69807962000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)