Query 035634
Match_columns 323
No_of_seqs 131 out of 234
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10110 GPDPase_memb: Membran 99.1 1.6E-09 3.5E-14 91.7 13.4 131 115-246 9-148 (149)
2 PF06161 DUF975: Protein of un 99.1 1.5E-07 3.2E-12 85.8 26.8 169 107-300 60-243 (243)
3 PF06790 UPF0259: Uncharacteri 99.0 2.2E-07 4.7E-12 84.7 23.6 191 10-238 2-195 (248)
4 PRK02868 hypothetical protein; 98.7 1E-05 2.2E-10 73.3 24.4 152 109-297 91-243 (245)
5 COG4781 Membrane domain of mem 95.5 2.2 4.9E-05 40.1 26.9 54 192-246 177-230 (340)
6 PF04515 Choline_transpo: Plas 87.9 24 0.00053 33.2 30.6 97 201-298 217-326 (334)
7 PRK04949 putative sulfate tran 81.4 44 0.00095 30.7 20.6 41 190-236 170-210 (251)
8 PF10110 GPDPase_memb: Membran 78.6 37 0.00081 28.2 14.7 50 6-60 17-69 (149)
9 PF13197 DUF4013: Protein of u 63.7 90 0.0019 26.3 15.2 22 2-23 31-53 (169)
10 PF11368 DUF3169: Protein of u 45.0 1.2E+02 0.0026 27.5 8.1 20 230-249 8-27 (248)
11 PLN03074 auxin influx permease 44.0 1.3E+02 0.0029 30.1 8.9 48 269-318 77-124 (473)
12 PF14362 DUF4407: Domain of un 41.6 2.9E+02 0.0064 25.6 10.5 53 193-255 53-105 (301)
13 PF06161 DUF975: Protein of un 41.1 2.6E+02 0.0056 24.9 9.7 31 220-250 8-38 (243)
14 PF02439 Adeno_E3_CR2: Adenovi 38.7 50 0.0011 21.2 3.1 23 280-302 12-34 (38)
15 PF03605 DcuA_DcuB: Anaerobic 38.2 2.5E+02 0.0054 27.3 9.2 46 16-61 69-116 (364)
16 PF13197 DUF4013: Protein of u 36.8 2.5E+02 0.0055 23.5 16.1 57 103-164 10-66 (169)
17 COG5523 Predicted integral mem 31.3 4.3E+02 0.0093 24.5 12.9 35 206-240 167-203 (271)
18 PF12911 OppC_N: N-terminal TM 26.1 1.6E+02 0.0034 19.7 4.4 25 16-40 4-28 (56)
19 PF11712 Vma12: Endoplasmic re 24.1 4.1E+02 0.0088 21.8 7.8 48 236-283 79-128 (142)
20 PF04854 DUF624: Protein of un 21.9 3.1E+02 0.0067 19.6 8.1 35 109-143 22-58 (77)
No 1
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=99.11 E-value=1.6e-09 Score=91.67 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=86.1
Q ss_pred HHHHHHHhhcCCCCchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hcC-Cch-----HHHHHHHHH
Q 035634 115 VAFIVSCIYTGNDINVKKAFSIIPKVWKQVLFTLLISLFIVFFYDVVFGSLLV--LTL-GFL-FNG-----PAIIAAVVA 185 (323)
Q Consensus 115 iv~av~~~~~g~~~tl~~~~~~~~~~~~~ll~T~~~~~ll~~~~~~~~~~~l~--~~~-~~~-~~~-----~~~~~~~l~ 185 (323)
.+..+.+.+.||+.|.+++++...+.+|+.........++-+.....+.-..+ ... +.. ++. ..-.....+
T Consensus 9 li~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~~~~s~ll~~l~IP~FI~~~i~~~~~~~~~ 88 (149)
T PF10110_consen 9 LILGIYRILRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANLGFSSSLLSKLKIPEFITDYIMKNPWLLIL 88 (149)
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCcCchHHHHHHHHhHHHHHH
Confidence 34567788999999999998876666666544443333333322222211111 111 111 100 000112344
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHHHHHHHH
Q 035634 186 LILFFAGSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVISGVCSAV 246 (323)
Q Consensus 186 ~i~~~~~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~~l~~~~ 246 (323)
..+..+...|++++|.++.+..++| |+...+|+||||+++||++|+.++..++..+..++
T Consensus 89 ~~~~~~~~~~l~~R~if~lp~~vle-~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~~~~ 148 (149)
T PF10110_consen 89 YLLLYLILFYLNIRLIFVLPLIVLE-NKSFKEALKESWQLTKGRFWRILGRLLLLFIIIGI 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 4555667899999999999999999 99999999999999999999999888887776654
No 2
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=99.10 E-value=1.5e-07 Score=85.79 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCchhHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HhcCC-
Q 035634 107 FSFLCTSTVAFIVSCIYTG-NDINVKKAFSII--PKVWKQVLFTLLISLFIVFFYDVVFGSLLV-----LT---LGFLF- 174 (323)
Q Consensus 107 ~sll~~~~iv~av~~~~~g-~~~tl~~~~~~~--~~~~~~ll~T~~~~~ll~~~~~~~~~~~l~-----~~---~~~~~- 174 (323)
.+.+..+. .+..-..+.| +++++++..... ++.+| .+.+.+...+..+....+..+... .. .+...
T Consensus 60 ~~~l~~G~-~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k-~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~~~~ 137 (243)
T PF06161_consen 60 SGPLSAGY-SFFYLDIVRGKEEPSFSDLFYGFKKKRFGK-SFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGSMNS 137 (243)
T ss_pred HHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHHccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 33333333 4455677788 899999998765 34454 455555555554444444322111 01 01111
Q ss_pred -c-hH-HHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 035634 175 -N-GP-AIIAAVVALILFFAGSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVISGVCSAVIDAIF 251 (323)
Q Consensus 175 -~-~~-~~~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~~l~~~~v~~~f 251 (323)
. .. .........++..+..++....+.+++-+-.-+||.+..+|+++|+++|||++|+.+.+-+-+..+ ..++
T Consensus 138 ~~~~~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfigw-~~L~--- 213 (243)
T PF06161_consen 138 RSSIISLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFIGW-YILG--- 213 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHH---
Confidence 1 11 111222233344445667777777777765555678999999999999999999998876544222 1110
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 035634 252 QKFALRELLIQNVGIRVGIGVFCFLLESLLILFDLVVQTVVYYVCKSYH 300 (323)
Q Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~vv~tV~Y~~CK~~~ 300 (323)
-+..| ...-.+.|+..++++.||.|+|+++
T Consensus 214 ---------------~~t~g----i~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 214 ---------------LLTFG----IGLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred ---------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00111 1123355999999999999999754
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=99.01 E-value=2.2e-07 Score=84.66 Aligned_cols=191 Identities=15% Similarity=0.180 Sum_probs=109.9
Q ss_pred cCChHHHHHHHHHhHhhChhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhccC-CCCCCCCCChhhhhhhhhhhhhhhh
Q 035634 10 ALGFFGVLKETFELIFSNKKIFSQITLALIVPLSLILQANILVTQLLSSKIFGN-NDNMHPTFDIFQYSNLNLSELNSFK 88 (323)
Q Consensus 10 pLg~~~Il~ea~~i~~~n~~~f~~i~~~l~lPls~l~l~~~~~~~pl~~~i~~~-~~~~~~~~~~~~~~~l~~~~~l~~~ 88 (323)
|-...+++|++++-.|++.+..+-++++..+- + ..+-+. -.|-.+++... +..+.. +.....+. .++.+.|
T Consensus 2 ~ita~~l~rDs~nFfrnq~~~I~llsll~a~i-t-vil~~~--~~p~~~~l~~l~~~~~~~--~~~sl~~~--v~~ms~e 73 (248)
T PF06790_consen 2 PITANSLYRDSFNFFRNQLISILLLSLLTAFI-T-VILNHI--FSPNAEQLQILSNNSDFS--SSMSLQDI--VQQMSPE 73 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH--hCccHHHHHHHHhhhchh--ccccHHHH--HHhCCHH
Confidence 45677899999999999888654444333221 1 112221 12222222200 101000 11111112 2333222
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 035634 89 GV-AFWALIKFSYFFFTLIFSFLCTSTVAFIVSCIYTGNDINVKKAFSIIPKVWKQVL-FTLLISLFIVFFYDVVFGSLL 166 (323)
Q Consensus 89 ~~-~l~~l~~~~~~~~~~~~sll~~~~iv~av~~~~~g~~~tl~~~~~~~~~~~~~ll-~T~~~~~ll~~~~~~~~~~~l 166 (323)
-. .++ -.+++.....++-..+..+.+..-......||+.+..+++....+.|+|++ .+++++.++.++..
T Consensus 74 qq~~ll-~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~------- 145 (248)
T PF06790_consen 74 QQNVLL-KASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFM------- 145 (248)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------
Confidence 11 122 333444444555556666666666778888999999999988767777743 33333332222211
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHH
Q 035634 167 VLTLGFLFNGPAIIAAVVALILFFAGSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLV 238 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~l 238 (323)
.+.+=-+|+++.+++|+++.+.| +.+..+|+|+||++++|++|+....++
T Consensus 146 ---------------------L~ivPGI~l~I~lslap~ilv~e-k~~i~~Amr~S~~Lt~~~~~ii~p~vL 195 (248)
T PF06790_consen 146 ---------------------LFIVPGIILAILLSLAPIILVLE-KKGIFDAMRASWKLTFGNFRIIIPAVL 195 (248)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122458888999999999999 999999999999999999887654433
No 4
>PRK02868 hypothetical protein; Provisional
Probab=98.74 E-value=1e-05 Score=73.30 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 035634 109 FLCTSTVAFIVSCIYTGNDINVKKAFSIIPKVWKQV-LFTLLISLFIVFFYDVVFGSLLVLTLGFLFNGPAIIAAVVALI 187 (323)
Q Consensus 109 ll~~~~iv~av~~~~~g~~~tl~~~~~~~~~~~~~l-l~T~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~i 187 (323)
.+..+++..=....-.||+++..+++....+.|+++ +.+++++.++.++ ..
T Consensus 91 ~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG----------------------------~~ 142 (245)
T PRK02868 91 TLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLG----------------------------FM 142 (245)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------HH
Confidence 333444443344555788899999998887788764 2333333222221 12
Q ss_pred HHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhH
Q 035634 188 LFFAGSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVISGVCSAVIDAIFQKFALRELLIQNVGIR 267 (323)
Q Consensus 188 ~~~~~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~~l~~~~v~~~f~~~v~~~~~~~~~~~~ 267 (323)
.+.+--+|+.++.++++++-+.| +.+..+|+|+||++.+|++|+..-.++. .++...+-..+...... ....
T Consensus 143 L~iiPGI~l~I~lsLa~vi~v~e-k~~v~~Air~S~~l~~~~~~~i~p~il~-Wll~k~ll~ll~~~l~~------~~~~ 214 (245)
T PRK02868 143 LVVVPGILLAIALSLSPVILVTE-KMGIFASMRASMRLAWANMRLVAPAVLL-WLLAKTLLLLLASSFAV------LTPN 214 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc------cChH
Confidence 22333568999999999999999 9999999999999999999987664332 33332222221111100 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035634 268 VGIGVFCFLLESLLILFDLVVQTVVYYVCK 297 (323)
Q Consensus 268 ~~~~~~~~~l~~~~~l~~~vv~tV~Y~~CK 297 (323)
...++...+..+++.+..+..-=+|+-+|
T Consensus 215 -v~~vi~~~l~nlls~fllIylFRlYmL~~ 243 (245)
T PRK02868 215 -VAAVLLNTLSNLISAILLIYLFRLYMLLR 243 (245)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566666777777776666666555
No 5
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=95.49 E-value=2.2 Score=40.05 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHHHHHHHH
Q 035634 192 GSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVISGVCSAV 246 (323)
Q Consensus 192 ~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~~l~~~~ 246 (323)
...|++++.-++.+-.+++ +..-.+|+|+||+-+|.+.-+-..=.....+..++
T Consensus 177 liFyis~RLif~LPl~i~~-~~tv~~Air~Swk~TKk~~f~l~~~~~~I~l~~~~ 230 (340)
T COG4781 177 LIFYISVRLIFALPLIILD-QLTVREAIRESWKKTKKNVFFLAWKLFLILLKIIL 230 (340)
T ss_pred HHHHHHHHHHHHhHHHHHh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3449999999999999999 89999999999999997765533333333333333
No 6
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=87.87 E-value=24 Score=33.20 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=56.6
Q ss_pred hhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHH-------HHHHHHHHHHHHHHHHhh---ccc--ccch-hH
Q 035634 201 HLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVIS-------GVCSAVIDAIFQKFALRE---LLI--QNVG-IR 267 (323)
Q Consensus 201 ~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~-------~l~~~~v~~~f~~~v~~~---~~~--~~~~-~~ 267 (323)
..|.+-..+. +.+=.+|-||+++|++.+.++....--+. .+..+...+......... ... .+.. .-
T Consensus 217 ~~ayi~~ai~-G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (334)
T PF04515_consen 217 KYAYIYIAIY-GKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPAL 295 (334)
T ss_pred HHHHHHHHhc-CCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHH
Confidence 3444555566 88888999999999999988854433222 222223333333333222 111 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 035634 268 VGIGVFCFLLESLLILFDLVVQTVVYYVCKS 298 (323)
Q Consensus 268 ~~~~~~~~~l~~~~~l~~~vv~tV~Y~~CK~ 298 (323)
+...+.+........+++..+.|++.+.|..
T Consensus 296 ~~~~i~~~i~~~f~~v~~~~vdti~vc~~~d 326 (334)
T PF04515_consen 296 ISFFIGYFISSIFMSVYSSAVDTIFVCYAED 326 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223345555667888999999999998885
No 7
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=81.38 E-value=44 Score=30.68 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHH
Q 035634 190 FAGSLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGM 236 (323)
Q Consensus 190 ~~~~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l 236 (323)
+..-.|+..+-.+..+. +++|. ..+++.++.|.++.+.++.
T Consensus 170 ~~~~awll~~ey~d~~~-----~r~~~-~~~~~r~~l~~~r~~~~gf 210 (251)
T PRK04949 170 FLFSAWMMAIQYCDYPF-----DNHKV-SFKDMRAALRQKRGTSLQF 210 (251)
T ss_pred HHHHHHHHHHHHhHhHH-----HHCCC-CHHHHHHHHHHhhhHHHHH
Confidence 33345555554444333 33332 3566778888888887664
No 8
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=78.61 E-value=37 Score=28.22 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=32.2
Q ss_pred hhcccCChHHHHHHHHHhHhh--Chh-hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 035634 6 ELKAALGFFGVLKETFELIFS--NKK-IFSQITLALIVPLSLILQANILVTQLLSSKI 60 (323)
Q Consensus 6 ~~l~pLg~~~Il~ea~~i~~~--n~~-~f~~i~~~l~lPls~l~l~~~~~~~pl~~~i 60 (323)
+.-++.+..++++++.+-.++ +++ .++.+-+++..|+.-+ ....|+.+++
T Consensus 17 ~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~-----~~~s~ll~~l 69 (149)
T PF10110_consen 17 LRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANL-----GFSSSLLSKL 69 (149)
T ss_pred HcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-----HHHHHHHccC
Confidence 345678899999999988886 444 3444566667776433 3345555543
No 9
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=63.73 E-value=90 Score=26.33 Aligned_cols=22 Identities=0% Similarity=-0.002 Sum_probs=16.2
Q ss_pred CccchhcccC-ChHHHHHHHHHh
Q 035634 2 EKHNELKAAL-GFFGVLKETFEL 23 (323)
Q Consensus 2 ~~~~~~l~pL-g~~~Il~ea~~i 23 (323)
+.+++|+++. +.++.+++.+|.
T Consensus 31 ~g~~~~lP~~~~~~~l~~~G~~~ 53 (169)
T PF13197_consen 31 IGGSDPLPEFNDWGELFVDGLKA 53 (169)
T ss_pred ccCCCCCCCchHHHHHHHHHHHH
Confidence 4556777776 788888888876
No 10
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=44.97 E-value=1.2e+02 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 035634 230 IGIAMGMLVISGVCSAVIDA 249 (323)
Q Consensus 230 ~~~~l~l~ll~~l~~~~v~~ 249 (323)
.||.+..+++-.++.++++.
T Consensus 8 ~~~~~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444443
No 11
>PLN03074 auxin influx permease; Provisional
Probab=43.96 E-value=1.3e+02 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCccCcchhhhhhhhhhh
Q 035634 269 GIGVFCFLLESLLILFDLVVQTVVYYVCKSYHADSFAGEASHQQKVIYIE 318 (323)
Q Consensus 269 ~~~~~~~~l~~~~~l~~~vv~tV~Y~~CK~~~~E~id~~~l~~~l~~y~~ 318 (323)
+.|++...+.+++..+..-....+|.++|.||.+ +.-+..+|.+.|.+
T Consensus 77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~--~~~~~~~~~~~~~e 124 (473)
T PLN03074 77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKER--EKVDFKNHVIQWFE 124 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCCchhHHHHHHHH
Confidence 4455566666667766666666667776654432 33334555544443
No 12
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.59 E-value=2.9e+02 Score=25.61 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhheeeeecCCchhhHHhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035634 193 SLYITITWHLAIVVSVLEENVYGIKAITKSRFLLKGKIGIAMGMLVISGVCSAVIDAIFQKFA 255 (323)
Q Consensus 193 ~~yl~v~~~la~vvsVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~ll~~l~~~~v~~~f~~~v 255 (323)
.+|-.+++++ |++-+...+|... .+.+++......++..++..+++-.+...+
T Consensus 53 lvwgl~I~~l---------DR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~i 105 (301)
T PF14362_consen 53 LVWGLVIFNL---------DRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKI 105 (301)
T ss_pred HHHHHHHHHH---------HHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555665 5555555555544 333444566666666666666666666554
No 13
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=41.13 E-value=2.6e+02 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.4
Q ss_pred hhhHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 035634 220 TKSRFLLKGKIGIAMGMLVISGVCSAVIDAI 250 (323)
Q Consensus 220 ~rS~~L~kG~~~~~l~l~ll~~l~~~~v~~~ 250 (323)
++|++..||++++..++.++..++...++..
T Consensus 8 ~~Ak~~L~gn~~~~vl~~l~~~li~~~~~~~ 38 (243)
T PF06161_consen 8 RQAKEQLKGNWGKAVLICLLIILISSLISFL 38 (243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999988888887766555444
No 14
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.66 E-value=50 Score=21.17 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhccCccCC
Q 035634 280 LLILFDLVVQTVVYYVCKSYHAD 302 (323)
Q Consensus 280 ~~~l~~~vv~tV~Y~~CK~~~~E 302 (323)
++.-+...+.+++||-|.-+++|
T Consensus 12 V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 34445567778888888766654
No 15
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=38.24 E-value=2.5e+02 Score=27.30 Aligned_cols=46 Identities=4% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHhHhhChhhHHHHHHHHHHHHHHHHH-HHHHH-hHHHHhhhc
Q 035634 16 VLKETFELIFSNKKIFSQITLALIVPLSLILQ-ANILV-TQLLSSKIF 61 (323)
Q Consensus 16 Il~ea~~i~~~n~~~f~~i~~~l~lPls~l~l-~~~~~-~~pl~~~i~ 61 (323)
..+-|=|++|||||..+-+.=++.--++++.= .|..+ .-|.+.++.
T Consensus 69 lV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA 116 (364)
T PF03605_consen 69 LVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSLLPVIAEVA 116 (364)
T ss_pred HHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHhhHHHHHHH
Confidence 56788999999999744322222211122211 23332 357777765
No 16
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=36.83 E-value=2.5e+02 Score=23.51 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035634 103 FTLIFSFLCTSTVAFIVSCIYTGNDINVKKAFSIIPKVWKQVLFTLLISLFIVFFYDVVFGS 164 (323)
Q Consensus 103 ~~~~~sll~~~~iv~av~~~~~g~~~tl~~~~~~~~~~~~~ll~T~~~~~ll~~~~~~~~~~ 164 (323)
...+..++..+-..-...+...|++-++.| |+ .|++++..-+...++.+.|..++.+
T Consensus 10 i~ii~~~~~~GY~~~v~~~~~~g~~~~lP~-~~----~~~~l~~~G~~~~ii~ivy~i~~~i 66 (169)
T PF13197_consen 10 IPIIGLFLLLGYLVRVIRSTAIGGSDPLPE-FN----DWGELFVDGLKAFIISIVYSIPPII 66 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCC-ch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666665565665444444 22 4555555555556666666655543
No 17
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=31.27 E-value=4.3e+02 Score=24.46 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=25.8
Q ss_pred eeeecCCc--hhhHHhhhhHHhhcCCchHHHHHHHHH
Q 035634 206 VSVLEENV--YGIKAITKSRFLLKGKIGIAMGMLVIS 240 (323)
Q Consensus 206 vsVlE~~~--~G~~Al~rS~~L~kG~~~~~l~l~ll~ 240 (323)
-.++|++. +..+++..|...|||.+|+.+.+-+-+
T Consensus 167 y~~l~dg~~~ga~~vl~eS~~mMKG~kw~lF~L~Lsf 203 (271)
T COG5523 167 YDQLEDGGYLGAYSVLSESKKMMKGYKWKLFILKLSF 203 (271)
T ss_pred HHHHHhCCCcchhHHHhHHHHHHhccccchhhhhHHH
Confidence 34566332 556679999999999999999765544
No 18
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.12 E-value=1.6e+02 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHhHhhChhhHHHHHHHHHH
Q 035634 16 VLKETFELIFSNKKIFSQITLALIV 40 (323)
Q Consensus 16 Il~ea~~i~~~n~~~f~~i~~~l~l 40 (323)
-.++..+-++||+..+.++..++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~ 28 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLIL 28 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3689999999999998887776543
No 19
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=24.13 E-value=4.1e+02 Score=21.84 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHh-hcccccchhHHHHHHHHHHHHHHHHH
Q 035634 236 MLVISGVCSAVIDAIFQKF-ALR-ELLIQNVGIRVGIGVFCFLLESLLIL 283 (323)
Q Consensus 236 l~ll~~l~~~~v~~~f~~~-v~~-~~~~~~~~~~~~~~~~~~~l~~~~~l 283 (323)
+..++|++.+++...+... ... ...+++...|+++|+++..+..+..+
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv 128 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEV 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555443322 212 11124667888877766555544443
No 20
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=21.87 E-value=3.1e+02 Score=19.63 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhcCC--CCchhHHHhhhhhhhHH
Q 035634 109 FLCTSTVAFIVSCIYTGN--DINVKKAFSIIPKVWKQ 143 (323)
Q Consensus 109 ll~~~~iv~av~~~~~g~--~~tl~~~~~~~~~~~~~ 143 (323)
..++++..+++.+...+| ....++-|+.-++.||+
T Consensus 22 gPA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~ 58 (77)
T PF04854_consen 22 GPATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQ 58 (77)
T ss_pred HHHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHH
Confidence 345666667777777777 46677777777777776
Done!