Query 035634
Match_columns 323
No_of_seqs 131 out of 234
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lo3_A SAGA-associated factor 69.7 0.9 3.1E-05 28.7 -0.1 25 293-318 17-41 (44)
2 3tx3_A Uncharacterized protein 35.0 2.2E+02 0.0077 24.6 18.8 17 219-235 193-209 (249)
3 3mhs_E SAGA-associated factor 30.9 8.9 0.00031 28.7 -0.3 21 293-314 75-95 (96)
4 1d8j_A General transcription f 24.2 27 0.00094 25.2 1.2 24 7-30 28-65 (81)
5 1zoq_C CREB-binding protein, i 12.1 1.4E+02 0.0047 19.0 2.1 17 17-33 19-35 (47)
6 2kgn_A Protein STE5; MAPKKK, S 8.4 64 0.0022 17.4 -0.3 8 225-232 2-9 (26)
7 4b6m_A Tubulin-specific chaper 7.5 80 0.0027 22.9 -0.3 12 291-302 56-67 (84)
8 4gow_A Potassium voltage-gated 7.4 1.1E+02 0.0038 21.2 0.5 31 288-318 16-46 (72)
9 2kxc_B ESPF-like protein; IRTK 7.1 1.3E+02 0.0045 19.3 0.6 12 307-318 7-18 (48)
10 1kbh_B CREB-binding protein, n 7.0 2.6E+02 0.0087 18.6 2.0 15 19-33 28-42 (59)
No 1
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=69.72 E-value=0.9 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.8
Q ss_pred HhhccCccCCccCcchhhhhhhhhhh
Q 035634 293 YYVCKSYHADSFAGEASHQQKVIYIE 318 (323)
Q Consensus 293 Y~~CK~~~~E~id~~~l~~~l~~y~~ 318 (323)
|..|++ .+..+-.|++-||||.|=.
T Consensus 17 YRvC~~-CgkPi~lsAIvdHLenhC~ 41 (44)
T 2lo3_A 17 YRVCEK-CGKPLALTAIVDHLENHCA 41 (44)
T ss_dssp EEECTT-TCCEEETTTHHHHHHHCCT
T ss_pred chhhcc-cCCcchHHHHHHHHHHHhc
Confidence 778886 6778899999999998743
No 2
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=35.03 E-value=2.2e+02 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=11.6
Q ss_pred hhhhHHhhcCCchHHHH
Q 035634 219 ITKSRFLLKGKIGIAMG 235 (323)
Q Consensus 219 l~rS~~L~kG~~~~~l~ 235 (323)
.++..+..|.+++..++
T Consensus 193 ~~~~~~~lr~~r~~~~~ 209 (249)
T 3tx3_A 193 FPRMRSELHQQRSKTLG 209 (249)
T ss_dssp HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 44566778888877655
No 3
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=30.92 E-value=8.9 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=14.4
Q ss_pred HhhccCccCCccCcchhhhhhh
Q 035634 293 YYVCKSYHADSFAGEASHQQKV 314 (323)
Q Consensus 293 Y~~CK~~~~E~id~~~l~~~l~ 314 (323)
|..|+. .+.-|-.+++-||||
T Consensus 75 YRvCn~-CGkPI~l~AIvDHLe 95 (96)
T 3mhs_E 75 YRVCEK-CGKPLALTAIVDHLE 95 (96)
T ss_dssp CEEETT-TCCEECGGGTTTCCC
T ss_pred chhhhc-cCCceeHHHHHHHhh
Confidence 666765 566677777777776
No 4
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=24.24 E-value=27 Score=25.24 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.0
Q ss_pred hcccCChHHHHHH--------------HHHhHhhChhh
Q 035634 7 LKAALGFFGVLKE--------------TFELIFSNKKI 30 (323)
Q Consensus 7 ~l~pLg~~~Il~e--------------a~~i~~~n~~~ 30 (323)
.-.|+++.|||+| ...++++|||+
T Consensus 28 ~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI 65 (81)
T 1d8j_A 28 DTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKI 65 (81)
T ss_dssp CCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTE
T ss_pred CCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCce
Confidence 3467999999999 34556667664
No 5
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=12.07 E-value=1.4e+02 Score=18.97 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHhHhhChhhHHH
Q 035634 17 LKETFELIFSNKKIFSQ 33 (323)
Q Consensus 17 l~ea~~i~~~n~~~f~~ 33 (323)
=.+.+.|+++||.++..
T Consensus 19 qqqvl~ILksnPqLMAA 35 (47)
T 1zoq_C 19 QQQVLNILKSNPQLMAA 35 (47)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 35678899999997644
No 6
>2kgn_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2l4u_A
Probab=8.41 E-value=64 Score=17.40 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=4.8
Q ss_pred hhcCCchH
Q 035634 225 LLKGKIGI 232 (323)
Q Consensus 225 L~kG~~~~ 232 (323)
|.||+.|+
T Consensus 2 lsrgkkwt 9 (26)
T 2kgn_A 2 LSRGKKWT 9 (26)
T ss_dssp HHHHGGGT
T ss_pred ccchhHHH
Confidence 45666664
No 7
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=7.49 E-value=80 Score=22.88 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=8.5
Q ss_pred HHHhhccCccCC
Q 035634 291 VVYYVCKSYHAD 302 (323)
Q Consensus 291 V~Y~~CK~~~~E 302 (323)
+=||+|+..|+-
T Consensus 56 ~rYF~C~~~~G~ 67 (84)
T 4b6m_A 56 TRVFQCQPNYGG 67 (84)
T ss_dssp EESSCCCTTSEE
T ss_pred EEEEecCCCeEE
Confidence 458888877654
No 8
>4gow_A Potassium voltage-gated channel subfamily KQT MEM; protein complex, protein binding, ION channel, calmodulin, P channel; 2.60A {Homo sapiens}
Probab=7.44 E-value=1.1e+02 Score=21.18 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=8.5
Q ss_pred HHHHHHhhccCccCCccCcchhhhhhhhhhh
Q 035634 288 VQTVVYYVCKSYHADSFAGEASHQQKVIYIE 318 (323)
Q Consensus 288 v~tV~Y~~CK~~~~E~id~~~l~~~l~~y~~ 318 (323)
+.-+-|++.|..-.|....-|..|.+|.|..
T Consensus 16 ir~mkf~VarrkFkealrPYDVkDVIEQYSa 46 (72)
T 4gow_A 16 IRILKFLVAKRKFKETLRPYDVKDVIEQYSA 46 (72)
T ss_dssp HHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 3445677777777888999999999999976
No 9
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=7.09 E-value=1.3e+02 Score=19.30 Aligned_cols=12 Identities=8% Similarity=-0.344 Sum_probs=9.5
Q ss_pred chhhhhhhhhhh
Q 035634 307 EASHQQKVIYIE 318 (323)
Q Consensus 307 ~~l~~~l~~y~~ 318 (323)
.+|.|||..|-.
T Consensus 7 QaLk~HLAAye~ 18 (48)
T 2kxc_B 7 QRLMQHLAEHGI 18 (48)
T ss_pred HHHHHHHHHHhh
Confidence 478899998854
No 10
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=7.00 E-value=2.6e+02 Score=18.61 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHhHhhChhhHHH
Q 035634 19 ETFELIFSNKKIFSQ 33 (323)
Q Consensus 19 ea~~i~~~n~~~f~~ 33 (323)
+.+.|+++||.++..
T Consensus 28 qvl~ILksNPqLMAA 42 (59)
T 1kbh_B 28 QVLNILKSNPQLMAA 42 (59)
T ss_dssp HHHHHHTTSHHHHHH
T ss_pred HHHHHHHhCHHHHHH
Confidence 457889999997543
Done!