Query 035634
Match_columns 323
No_of_seqs 131 out of 234
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 07:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035634.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035634hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2glia5 g.37.1.1 (A:229-257) F 16.5 22 0.0016 19.1 0.8 25 294-318 3-29 (29)
2 d1d6za2 d.17.2.1 (A:91-185) Co 16.0 43 0.0032 22.8 2.7 25 4-29 2-26 (95)
3 d1vola1 a.74.1.2 (A:113-207) T 14.8 28 0.002 23.5 1.3 28 286-314 46-73 (95)
4 d2cp0a1 b.34.10.1 (A:7-89) CLI 13.9 11 0.0008 25.7 -1.2 18 292-309 60-77 (83)
5 d1whka_ b.34.10.1 (A:) Restin- 13.7 18 0.0013 25.0 -0.0 19 291-309 62-80 (91)
6 d2e3ha1 b.34.10.1 (A:212-282) 12.8 18 0.0013 23.8 -0.3 15 291-305 49-63 (71)
7 d1aisb1 a.74.1.2 (B:1108-1205) 12.7 34 0.0025 23.1 1.3 28 286-314 46-73 (98)
8 d2hqha1 b.34.10.1 (A:26-97) Dy 11.0 22 0.0016 23.4 -0.3 11 292-302 52-62 (72)
9 d1whla_ b.34.10.1 (A:) Cylindr 9.6 26 0.0019 24.3 -0.3 12 291-302 67-78 (95)
10 d1whja_ b.34.10.1 (A:) Restin- 9.3 27 0.002 24.5 -0.3 15 291-305 73-87 (102)
No 1
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.48 E-value=22 Score=19.07 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=17.2
Q ss_pred hhccCccCCc--cCcchhhhhhhhhhh
Q 035634 294 YVCKSYHADS--FAGEASHQQKVIYIE 318 (323)
Q Consensus 294 ~~CK~~~~E~--id~~~l~~~l~~y~~ 318 (323)
|.||.....+ .|.++|..|++...|
T Consensus 3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG 29 (29)
T d2glia5 3 YVCKLPGCTKRYTDPSSLRKHVKTVHG 29 (29)
T ss_dssp EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred eecccCCCCcccCCHHHHHHHHHhhCC
Confidence 4577543332 799999999986543
No 2
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=15.96 E-value=43 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=20.2
Q ss_pred cchhcccCChHHHHHHHHHhHhhChh
Q 035634 4 HNELKAALGFFGVLKETFELIFSNKK 29 (323)
Q Consensus 4 ~~~~l~pLg~~~Il~ea~~i~~~n~~ 29 (323)
-|+||-||+-.+| +.+.+++|++..
T Consensus 2 ~PHPLDpLs~~EI-~~a~~ivr~~~~ 26 (95)
T d1d6za2 2 RPHPLNALTADEI-KQAVEIVKASAD 26 (95)
T ss_dssp SCCTTCCCCHHHH-HHHHHHHHTSTT
T ss_pred CCCCCCCCCHHHH-HHHHHHHHhccC
Confidence 5899999999998 677788887543
No 3
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.81 E-value=28 Score=23.53 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHhhccCccCCccCcchhhhhhh
Q 035634 286 LVVQTVVYYVCKSYHADSFAGEASHQQKV 314 (323)
Q Consensus 286 ~vv~tV~Y~~CK~~~~E~id~~~l~~~l~ 314 (323)
.++.+..|+.||. ++......+++|..+
T Consensus 46 ~i~AA~iY~acr~-~~~p~t~~eIa~~~~ 73 (95)
T d1vola1 46 AIASACLYIACRQ-EGVPRTFKEICAVSR 73 (95)
T ss_dssp HHHHHHHHHHHHH-TTCCCCHHHHHTTTC
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHhC
Confidence 4567788999995 555666677777653
No 4
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.92 E-value=11 Score=25.69 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHhhccCccCCccCcchh
Q 035634 292 VYYVCKSYHADSFAGEAS 309 (323)
Q Consensus 292 ~Y~~CK~~~~E~id~~~l 309 (323)
=||+||..|+-=+..+.+
T Consensus 60 rYF~C~~~~G~Fv~~~~v 77 (83)
T d2cp0a1 60 RYFICPPKQGLFASVSKI 77 (83)
T ss_dssp ECCCCSSSCEEEECGGGE
T ss_pred EEeecCCCceEEcCHHHc
Confidence 388888877654444433
No 5
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.67 E-value=18 Score=24.98 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHhhccCccCCccCcchh
Q 035634 291 VVYYVCKSYHADSFAGEAS 309 (323)
Q Consensus 291 V~Y~~CK~~~~E~id~~~l 309 (323)
+-||+||..|+.=+..+.+
T Consensus 62 ~~YF~C~~~~G~Fv~~~~v 80 (91)
T d1whka_ 62 KRYFTCKPNYGVLVRPSRV 80 (91)
T ss_dssp EECCCCSTTCCCEECGGGE
T ss_pred EEEeecCCCceEEeCHHHe
Confidence 4599999888765554444
No 6
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.76 E-value=18 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=9.9
Q ss_pred HHHhhccCccCCccC
Q 035634 291 VVYYVCKSYHADSFA 305 (323)
Q Consensus 291 V~Y~~CK~~~~E~id 305 (323)
+=||+|+..|+-=+.
T Consensus 49 ~~YF~c~~~~G~Fv~ 63 (71)
T d2e3ha1 49 TRYFQCQPKYGLFAP 63 (71)
T ss_dssp EESCCCCTTCEEEEE
T ss_pred EEEEecCCCCEEEeC
Confidence 348889887765443
No 7
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=12.67 E-value=34 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHhhccCccCCccCcchhhhhhh
Q 035634 286 LVVQTVVYYVCKSYHADSFAGEASHQQKV 314 (323)
Q Consensus 286 ~vv~tV~Y~~CK~~~~E~id~~~l~~~l~ 314 (323)
.++.+..|+.||. +++.....++++..+
T Consensus 46 ~iaaA~iY~Acr~-~~~~~t~~eIa~~~~ 73 (98)
T d1aisb1 46 SVMAACVYAACRL-LKVPRTLDEIADIAR 73 (98)
T ss_dssp HHHHHHHHHHHHH-HTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHC
Confidence 3566778999986 567778888887764
No 8
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.04 E-value=22 Score=23.36 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.7
Q ss_pred HHhhccCccCC
Q 035634 292 VYYVCKSYHAD 302 (323)
Q Consensus 292 ~Y~~CK~~~~E 302 (323)
=||+|++.|+-
T Consensus 52 ~YF~C~~~~G~ 62 (72)
T d2hqha1 52 KYFTCDEGHGI 62 (72)
T ss_dssp ESSCCCTTTEE
T ss_pred EEEecCCCcEE
Confidence 47888877654
No 9
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.58 E-value=26 Score=24.28 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=8.0
Q ss_pred HHHhhccCccCC
Q 035634 291 VVYYVCKSYHAD 302 (323)
Q Consensus 291 V~Y~~CK~~~~E 302 (323)
+-||+||..|+-
T Consensus 67 ~rYF~C~~~~Gi 78 (95)
T d1whla_ 67 KQLFQCDEDCGV 78 (95)
T ss_dssp EECCCCCTTTEE
T ss_pred EEEEecCCCcEE
Confidence 347888876653
No 10
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.28 E-value=27 Score=24.50 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=9.5
Q ss_pred HHHhhccCccCCccC
Q 035634 291 VVYYVCKSYHADSFA 305 (323)
Q Consensus 291 V~Y~~CK~~~~E~id 305 (323)
+=||+||..|+-=+.
T Consensus 73 ~~YF~C~~~~GiFv~ 87 (102)
T d1whja_ 73 VQYFKCAPKYGIFAP 87 (102)
T ss_dssp EECCCCCTTTEEEEE
T ss_pred EEEeecCCCcEEEec
Confidence 348888877754333
Done!