BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035637
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKE
PAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITC
PELEQR

High Scoring Gene Products

Symbol, full name Information P value
AT4G12290 protein from Arabidopsis thaliana 4.1e-12
AT4G12270 protein from Arabidopsis thaliana 1.5e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035637
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139069 - symbol:AT4G12290 species:3702 "Arabi...   174  4.1e-12   1
TAIR|locus:2139039 - symbol:AT4G12270 species:3702 "Arabi...   147  1.5e-09   1


>TAIR|locus:2139069 [details] [associations]
            symbol:AT4G12290 species:3702 "Arabidopsis thaliana"
            [GO:0005507 "copper ion binding" evidence=IEA;ISS] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008131 "primary amine
            oxidase activity" evidence=IEA] [GO:0009308 "amine metabolic
            process" evidence=IEA] [GO:0048038 "quinone binding" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0005768 "endosome" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0005802
            "trans-Golgi network" evidence=IDA] InterPro:IPR000269
            InterPro:IPR015798 InterPro:IPR015800 InterPro:IPR015801
            InterPro:IPR015802 InterPro:IPR016182 Pfam:PF01179 Pfam:PF02727
            Pfam:PF02728 PROSITE:PS01164 PROSITE:PS01165 GO:GO:0005794
            GO:GO:0005773 EMBL:CP002687 GO:GO:0005768 GO:GO:0005507
            eggNOG:COG3733 GO:GO:0008131 GO:GO:0048038 GO:GO:0009308
            Gene3D:2.70.98.20 Gene3D:3.10.450.40 PANTHER:PTHR10638
            SUPFAM:SSF54416 SUPFAM:SSF49998 GO:GO:0005802 HSSP:Q43077
            EMBL:AY139770 EMBL:BT004538 IPI:IPI00536273 RefSeq:NP_192966.5
            UniGene:At.19654 ProteinModelPortal:Q8L742 SMR:Q8L742 PRIDE:Q8L742
            EnsemblPlants:AT4G12290.1 GeneID:826838 KEGG:ath:AT4G12290
            TAIR:At4g12290 InParanoid:Q8L742 OMA:DAWYFKT PhylomeDB:Q8L742
            ProtClustDB:CLSN2927405 Genevestigator:Q8L742 Uniprot:Q8L742
        Length = 741

 Score = 174 (66.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 42/123 (34%), Positives = 63/123 (51%)

Query:     1 MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKN----RFQ 54
             M+ + + R +F  V    +++ T  N P+AP   T   DCT  SS   C S+N    + Q
Sbjct:     1 MDQKSFFRLIFLIVTAGFIISFTSTNFPHAP---TRLLDCTDSSSSPLCASRNFLFNKQQ 57

Query:    55 SKPL-KEPAKSXXXXXXXXXXXXXXXLDPLTVKEINRVRTILTSHELFKNSFPYAFHSIT 113
              +P+ K   K                LDPLTV EIN++R+IL+SH LF +  P+A H++ 
Sbjct:    58 PRPIPKHDPKPNTKNHDHVSDTPNHPLDPLTVSEINKIRSILSSHALFTSGTPHALHTVV 117

Query:   114 LTQ 116
             L +
Sbjct:   118 LEE 120


>TAIR|locus:2139039 [details] [associations]
            symbol:AT4G12270 species:3702 "Arabidopsis thaliana"
            [GO:0005507 "copper ion binding" evidence=IEA;ISS] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008131 "primary amine
            oxidase activity" evidence=IEA] [GO:0009308 "amine metabolic
            process" evidence=IEA] [GO:0048038 "quinone binding" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA]
            InterPro:IPR000269 InterPro:IPR015798 InterPro:IPR015800
            InterPro:IPR015801 InterPro:IPR015802 InterPro:IPR016182
            Pfam:PF01179 Pfam:PF02727 Pfam:PF02728 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005507 eggNOG:COG3733
            GO:GO:0008131 GO:GO:0048038 GO:GO:0009308 Gene3D:2.70.98.20
            Gene3D:3.10.450.40 PANTHER:PTHR10638 SUPFAM:SSF54416
            SUPFAM:SSF49998 HSSP:Q43077 EMBL:AL161533 EMBL:AL080318
            IPI:IPI00524751 PIR:T48137 RefSeq:NP_192964.1 UniGene:At.54290
            ProteinModelPortal:Q9STI4 SMR:Q9STI4 EnsemblPlants:AT4G12270.1
            GeneID:826835 KEGG:ath:AT4G12270 TAIR:At4g12270 InParanoid:Q9STI4
            PhylomeDB:Q9STI4 ArrayExpress:Q9STI4 Genevestigator:Q9STI4
            Uniprot:Q9STI4
        Length = 460

 Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 41/114 (35%), Positives = 57/114 (50%)

Query:    10 LFFFVGIAT-LLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKNRFQSK---PL-KEPA 62
             LF  +  A  +L  T  N   AP    + FDCT  SS  +C S+N   +K   P+ K   
Sbjct:     9 LFLLITTACFILLFTSTNFSQAPSSTAKLFDCTKSSSSPFCASRNFLFNKNTRPISKNIP 68

Query:    63 KSXXXXXXXXXXXXXXXLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
             K+               LDPLTV EIN+VR+IL+SH LF +  P+  +S+ L +
Sbjct:    69 KTKPKNHDHVSDTPNHPLDPLTVMEINKVRSILSSHALFASRVPHLLNSVVLEE 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       111   0.00091  102 3  11 22  0.41    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  138 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.60u 0.11s 10.71t   Elapsed:  00:00:03
  Total cpu time:  10.60u 0.11s 10.71t   Elapsed:  00:00:03
  Start:  Fri May 10 01:31:25 2013   End:  Fri May 10 01:31:28 2013

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