BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035637
         (126 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2
           SV=1
          Length = 712

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 53  FQSKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSI 112
           F ++  K    +   H DH+ + PHHPLDPLTV+EINRVRTIL++H+    S     HS+
Sbjct: 35  FGTRVRKTLGSNRQVHVDHSLEKPHHPLDPLTVREINRVRTILSNHDPGFGSGSATIHSM 94

Query: 113 TLTQ 116
            L +
Sbjct: 95  ALDE 98


>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum
           GN=PRH PE=2 SV=1
          Length = 1088

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 24/111 (21%)

Query: 24  WNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKEPAKST------------SHHHDH 71
           W  +  +P D T+   C  ++        F S P+++ A+S+            SH+HDH
Sbjct: 52  WCEIVRSPEDLTKLVPCNDFAE---DIKLFDSDPMQQEAESSIGIPLIPKQVTMSHNHDH 108

Query: 72  ASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPE 122
            S +       +   E+ +   ++ +   ++ S    F  I + QK T PE
Sbjct: 109 ESGS------EMVSNEVMQENHVIATENTYQKS---DFDRINMGQKETMPE 150


>sp|Q5BIR3|THSD1_BOVIN Thrombospondin type-1 domain-containing protein 1 OS=Bos taurus
           GN=THSD1 PE=2 SV=1
          Length = 849

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 10  LFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSK--PLKEPAKSTSH 67
           L  F+ +AT+L   W  L  AP  +T     + +   C  KN  +     L EP  S S 
Sbjct: 422 LCLFIIVATVLITLWRKLGRAPKCSTPARHNSLHGPGC-RKNSDEENICELSEPRGSFSD 480

Query: 68  HHDHASDTPHHPLDPLTVK 86
             D  + +P  P  PLT +
Sbjct: 481 AGDGPAGSPGDPGIPLTYR 499


>sp|Q7XJM2|CCD7_ARATH Carotenoid cleavage dioxygenase 7, chloroplastic OS=Arabidopsis
           thaliana GN=CCD7 PE=1 SV=1
          Length = 618

 Score = 30.0 bits (66), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 13/103 (12%)

Query: 23  TWNNLPYAPPDATE--DFDCTTYSSWCTSKNRFQSKPLKEPAKSTSHHH----------D 70
           T + LP+ P D     D D     +W T   RF  +P+  P  S               +
Sbjct: 512 TRSELPHFPFDMVVKFDLDSNLVRTWSTGARRFVGEPMFVPKNSVEEGEEEDDGYIVVVE 571

Query: 71  HASDTPHHPLDPLTVKEINRVRTILTSHELFKN-SFPYAFHSI 112
           +A       L  L  K+I     +++  E+ +N +FP  FH +
Sbjct: 572 YAVSVERCYLVILDAKKIGESDAVVSRLEVPRNLTFPMGFHGL 614


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,401,553
Number of Sequences: 539616
Number of extensions: 1800409
Number of successful extensions: 4793
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4776
Number of HSP's gapped (non-prelim): 26
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)