BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035639
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 119
F L +G V + GDA H TP++GQGGC A+EDAVVL G + +T+ ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 341
Query: 120 AQAIDGYVKERKWRVTGLVI 139
A A+ Y +R RV LV+
Sbjct: 342 AAALREYEAQRCDRVRDLVL 361
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 119
F L +G V + GDA H TP++GQGGC A EDAVVL G + +T+ ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVL----GAVFRQTR---------DI 341
Query: 120 AQAIDGYVKERKWRVTGLVI 139
A A+ Y +R RV LV+
Sbjct: 342 AAALREYEAQRCDRVRDLVL 361
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 23/106 (21%)
Query: 31 PFFLDIVQRSDVSTLHWAPLMFRH-----PWNVFFGNLSKGNVTVAGDAMHPMTPELGQG 85
P +VQ+SD + +PL R PW VT+ GDA+H TP G G
Sbjct: 280 PSLHTLVQQSDXENI--SPLHLRSXPHLLPWK-------SSTVTLLGDAIHNXTPXTGSG 330
Query: 86 GCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 131
AL DA++L + + ++ +G + +AI Y ++ +
Sbjct: 331 ANTALRDALLLTQKLASV---------ASGHEELVKAISDYEQQXR 367
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 35.4 bits (80), Expect = 0.017, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 42 VSTLHWAPLMFRHP--WNVFFGNLSK-------GNVTVAGDAMHPMTPELGQGGCQALED 92
V+ + PL P W FG+ S+ G V +AGDA H P GQG L+D
Sbjct: 289 VARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQD 348
Query: 93 AVVLG 97
AV LG
Sbjct: 349 AVNLG 353
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 56 WNVFFGNLSK-------GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTK 108
W FGN ++ G V +AGD+ H P GQG +++DAV LG +G ++ T
Sbjct: 260 WVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTA 319
Query: 109 GHIATTGDNNVAQAIDGYVKER 130
+ +D Y ER
Sbjct: 320 ----------TEELLDSYHSER 331
>pdb|2CHN|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
pdb|2CHN|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
Length = 716
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 239 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVXCPTEYNKSWSN 288
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P ++ G + + D G N IK +I
Sbjct: 289 PNGNY----LTTLGDKLNPSI-QIXWTGDRVISDITRDGISWINERIKRPAYI 336
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 315 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 351
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 67 NVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKG----HIATTGDNNVAQA 122
V +AGDA H +P+ GQG +++D+ LG + +L K H ++ VAQ
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQ 402
Query: 123 IDGYVKERKW 132
+ + +R+W
Sbjct: 403 LIDF--DREW 410
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 260 VFFDNISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 309
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 310 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 357
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 260 VFFNDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 309
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 310 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 357
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 21 VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGN-VTVAGDAMHPMT 79
V+ K+ P+ D+ Q L W H SK V +AGDA H +
Sbjct: 313 VIANAKKIFHPYTFDVQQ------LDW--FTAYHIGQRVTEKFSKDERVFIAGDACHTHS 364
Query: 80 PELGQGGCQALEDAVVLGRHIGNLL 104
P+ GQG ++ D LG +G +L
Sbjct: 365 PKAGQGMNTSMMDTYNLGWKLGLVL 389
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 21 VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGN-VTVAGDAMHPMT 79
V+ K+ P+ D+ Q L W H SK V +AGDA H +
Sbjct: 312 VIANAKKIFHPYTFDVQQ------LDW--FTAYHIGQRVTEKFSKDERVFIAGDACHTHS 363
Query: 80 PELGQGGCQALEDAVVLGRHIGNLL 104
P+ GQG ++ D LG +G +L
Sbjct: 364 PKAGQGMNTSMMDTYNLGWKLGLVL 388
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 260 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 309
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 310 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 357
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 239 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 288
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 289 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 336
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 238 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 287
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 288 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 335
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 239 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 288
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 289 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 336
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 1 MFFMYISGE--NKAGNPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNV 58
+FF ISGE N EL+ + EK+A+V P D++ L P + W+
Sbjct: 239 VFFDDISGEGTNPQKQAELLNYIDEKFAQVKP----------DINQLVMCPTEYNKSWSN 288
Query: 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHI 111
GN +T GD ++P + ++ G + + D G N IK +I
Sbjct: 289 PNGNY----LTTLGDKLNP-SIQIMWTGDRVISDITRDGISWINERIKRPAYI 336
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 330
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 49 PLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTK 108
P++ R P + +G +T+ GDA H M P G QA+ D + L
Sbjct: 290 PMVDRDP----LPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELA----------- 334
Query: 109 GHIATTGDNNVAQAIDGYVKERK 131
A + +VA A+ Y + R+
Sbjct: 335 --AALARNADVAAALREYEEARR 355
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 25 YAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMH--PMTPEL 82
Y + +P F I +R HW + + L++ N+ + + + P+ EL
Sbjct: 393 YKENIPNFLKGIEER------HWDAYILME---LIEPELNENNIILRDNKSYNEPIISEL 443
Query: 83 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTG 115
G GC D VL L+++K + + G
Sbjct: 444 GIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEG 476
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 53 RHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGH 110
R + VFF LS + A+ E+G G C L D ++ RH+ + L +K H
Sbjct: 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG-GRCVTLLDGDIVRRHLSSELGFSKAH 423
>pdb|3JXP|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(pqqb) From Pseudomonas Putida
Length = 321
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 91 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 131
ED + R +G + GH+A G + +DG+ ++RK
Sbjct: 227 EDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRK 267
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 44 TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDA 93
+LHW P+ + W +++ V VA +GGCQA+ D
Sbjct: 179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-----------CEGGCQAILDT 217
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 44 TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDA 93
+LHW P+ + W +++ V VA +GGCQA+ D
Sbjct: 179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-----------CEGGCQAILDT 217
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 14 NPELIQKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWN---VFFGNLSKGNVTV 70
+P+L+ ++L+ AK++P Q SD+ +H FR N + LS G
Sbjct: 256 SPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNEDQMAVEKLSDGIRKF 315
Query: 71 AGDAM 75
A DA+
Sbjct: 316 AADAV 320
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 64 SKGNVTVAGDAMHPMTPELGQG-GCQ-----ALEDAVVLGRHIGNLLIKTKGHIATTGDN 117
++G V + GDA H P L QG GC +L + G + + L+ + I D
Sbjct: 315 TRGKVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEEGSSVEDALVAWETRIRPITDR 374
Query: 118 NVAQAIDG 125
QA+ G
Sbjct: 375 --CQALSG 380
>pdb|1XTO|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(Pqqb) From Pseudomonas Putida, Northeast Structural
Genomics Target Ppr6
Length = 311
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 91 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 131
ED R +G + GH+A G + +DG+ ++RK
Sbjct: 225 EDDEXQRRGVGTRTGREXGHLAQNGPGGXLEVLDGFPRQRK 265
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 56 WNVFFGNLSK-------GNVTVAGDAMHPMTPELGQGGCQALEDAVVLG 97
W FG+ ++ G V +AGD+ H P GQG +++D+V LG
Sbjct: 261 WVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLG 309
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T GDA H P GQG L DA++L ++ +
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLAD 330
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102
+T GDA H P GQG L DA++L ++ +
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLAD 351
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 83 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 124
G+ E+ V L RH+ +++ K IA TG NN +ID
Sbjct: 48 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASID 89
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 83 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 124
G+ E+ V L RH+ +++ K IA TG NN +ID
Sbjct: 57 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASID 98
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVL 96
+G +T+ GDA H P G QA+ D + L
Sbjct: 302 RGRITLLGDAAHLXYPXGANGASQAILDGIEL 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,153,637
Number of Sequences: 62578
Number of extensions: 194205
Number of successful extensions: 546
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 45
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)