Query 035639
Match_columns 177
No_of_seqs 140 out of 1221
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03219 salicylate_mono sali 99.9 2.6E-24 5.6E-29 182.1 13.4 121 19-155 260-380 (414)
2 PLN02927 antheraxanthin epoxid 99.9 3.1E-22 6.8E-27 177.2 15.8 128 15-150 320-448 (668)
3 PRK06753 hypothetical protein; 99.9 4.5E-22 9.7E-27 165.8 14.2 120 21-159 230-349 (373)
4 PRK06475 salicylate hydroxylas 99.9 4.5E-22 9.7E-27 167.8 14.0 114 20-154 253-366 (400)
5 PRK07236 hypothetical protein; 99.9 5.3E-22 1.2E-26 166.6 14.4 113 21-152 267-379 (386)
6 PRK06847 hypothetical protein; 99.9 5.5E-22 1.2E-26 165.3 14.2 128 14-159 232-365 (375)
7 PRK07588 hypothetical protein; 99.9 6.5E-22 1.4E-26 166.1 12.3 128 14-159 231-360 (391)
8 PRK08163 salicylate hydroxylas 99.9 8.3E-22 1.8E-26 165.4 12.1 115 19-152 246-360 (396)
9 PRK05868 hypothetical protein; 99.9 2.8E-21 6.2E-26 161.8 12.5 125 16-159 236-363 (372)
10 PRK07538 hypothetical protein; 99.9 6.7E-21 1.5E-25 161.3 13.1 107 17-143 252-361 (413)
11 PRK05714 2-octaprenyl-3-methyl 99.8 3.9E-21 8.5E-26 162.1 10.4 102 46-159 270-371 (405)
12 TIGR02360 pbenz_hydroxyl 4-hyd 99.8 4.1E-20 8.9E-25 155.6 13.0 79 61-150 274-352 (390)
13 PRK07045 putative monooxygenas 99.8 2.7E-20 5.8E-25 156.2 11.3 124 21-159 244-369 (388)
14 KOG2614 Kynurenine 3-monooxyge 99.8 2.7E-20 5.9E-25 154.3 9.9 142 12-154 234-381 (420)
15 PRK08132 FAD-dependent oxidore 99.8 2.1E-20 4.5E-25 163.6 9.6 87 60-156 293-379 (547)
16 COG0654 UbiH 2-polyprenyl-6-me 99.8 2.6E-20 5.6E-25 156.7 8.0 90 60-159 272-361 (387)
17 PRK06996 hypothetical protein; 99.8 6.2E-20 1.4E-24 154.8 10.3 86 61-159 286-371 (398)
18 PRK08849 2-octaprenyl-3-methyl 99.8 1.2E-19 2.6E-24 152.3 11.3 88 60-159 273-360 (384)
19 PRK06183 mhpA 3-(3-hydroxyphen 99.8 7.7E-20 1.7E-24 159.8 9.1 90 60-159 280-369 (538)
20 PRK08850 2-octaprenyl-6-methox 99.8 1.8E-19 3.9E-24 152.2 10.7 93 60-159 276-368 (405)
21 PRK08013 oxidoreductase; Provi 99.8 1.7E-19 3.6E-24 152.3 10.2 93 60-159 276-368 (400)
22 PRK08773 2-octaprenyl-3-methyl 99.8 3.5E-19 7.6E-24 149.6 10.7 93 60-159 276-368 (392)
23 PRK07364 2-octaprenyl-6-methox 99.8 3.8E-19 8.1E-24 150.2 10.9 92 61-159 289-380 (415)
24 PRK08243 4-hydroxybenzoate 3-m 99.8 3.2E-19 7E-24 150.1 10.2 80 60-150 273-352 (392)
25 PRK06185 hypothetical protein; 99.8 6E-19 1.3E-23 148.7 11.7 124 21-159 244-370 (407)
26 PRK06617 2-octaprenyl-6-methox 99.8 3.1E-19 6.7E-24 149.4 9.1 93 45-159 257-349 (374)
27 PTZ00367 squalene epoxidase; P 99.8 3.7E-18 8.1E-23 149.8 15.2 127 17-150 290-423 (567)
28 PLN02985 squalene monooxygenas 99.8 3.8E-18 8.3E-23 148.4 15.0 132 16-159 278-413 (514)
29 PRK08020 ubiF 2-octaprenyl-3-m 99.8 7.9E-19 1.7E-23 147.3 10.3 93 60-159 275-367 (391)
30 PRK06834 hypothetical protein; 99.8 5.7E-19 1.2E-23 152.8 9.7 90 59-159 258-347 (488)
31 PRK07333 2-octaprenyl-6-methox 99.8 8.1E-19 1.8E-23 147.5 9.7 93 60-159 274-366 (403)
32 PRK07494 2-octaprenyl-6-methox 99.8 1.4E-19 3.1E-24 151.6 4.2 89 61-159 275-363 (388)
33 TIGR01989 COQ6 Ubiquinone bios 99.8 2.3E-18 5E-23 147.0 11.1 93 60-159 327-419 (437)
34 TIGR01988 Ubi-OHases Ubiquinon 99.8 3.9E-18 8.4E-23 142.1 11.8 92 61-159 271-362 (385)
35 PF01494 FAD_binding_3: FAD bi 99.8 5.8E-19 1.3E-23 144.4 6.6 72 60-141 285-356 (356)
36 PRK06126 hypothetical protein; 99.8 1.1E-18 2.3E-23 152.6 7.9 81 59-149 296-376 (545)
37 TIGR01984 UbiH 2-polyprenyl-6- 99.8 2.3E-18 5E-23 143.8 9.5 90 60-159 270-359 (382)
38 PRK09126 hypothetical protein; 99.8 2.2E-18 4.9E-23 144.5 9.1 92 61-159 275-366 (392)
39 PRK06184 hypothetical protein; 99.8 1.7E-18 3.7E-23 150.1 8.5 80 60-150 275-354 (502)
40 PRK08255 salicylyl-CoA 5-hydro 99.8 2.3E-18 5E-23 155.9 9.7 123 15-155 219-346 (765)
41 PRK08294 phenol 2-monooxygenas 99.7 8E-18 1.7E-22 149.6 11.5 79 64-152 338-416 (634)
42 PRK05732 2-octaprenyl-6-methox 99.7 1E-17 2.2E-22 140.4 9.9 92 61-159 277-368 (395)
43 PRK08244 hypothetical protein; 99.7 6.8E-18 1.5E-22 146.0 7.8 82 60-151 266-347 (493)
44 PRK07608 ubiquinone biosynthes 99.7 1.4E-17 3E-22 139.4 9.4 92 60-159 274-365 (388)
45 PRK07190 hypothetical protein; 99.7 2.6E-17 5.7E-22 142.4 11.0 82 58-149 266-348 (487)
46 PF08491 SE: Squalene epoxidas 99.5 8E-13 1.7E-17 105.8 12.9 133 15-159 82-216 (276)
47 TIGR02023 BchP-ChlP geranylger 99.1 2.8E-10 6.1E-15 95.8 10.1 78 61-149 259-336 (388)
48 TIGR02032 GG-red-SF geranylger 99.1 3E-11 6.4E-16 96.8 3.1 40 61-100 256-295 (295)
49 KOG3855 Monooxygenase involved 99.1 1.2E-10 2.7E-15 97.1 4.9 92 61-159 365-456 (481)
50 PRK11445 putative oxidoreducta 99.1 4E-10 8.6E-15 93.8 7.2 62 63-139 261-322 (351)
51 PLN00093 geranylgeranyl diphos 99.0 2.3E-09 5E-14 92.2 9.9 87 62-155 305-391 (450)
52 TIGR02028 ChlP geranylgeranyl 99.0 5E-09 1.1E-13 88.7 10.4 83 62-151 266-348 (398)
53 TIGR01790 carotene-cycl lycope 99.0 3.4E-09 7.4E-14 88.8 9.2 63 63-136 259-321 (388)
54 TIGR01789 lycopene_cycl lycope 98.7 6E-08 1.3E-12 81.5 7.6 64 65-140 250-313 (370)
55 KOG1298 Squalene monooxygenase 98.3 6.2E-06 1.4E-10 69.0 10.9 133 15-159 278-413 (509)
56 PRK10157 putative oxidoreducta 98.3 7.4E-06 1.6E-10 70.1 10.3 80 62-150 291-372 (428)
57 PRK10015 oxidoreductase; Provi 98.1 7.9E-06 1.7E-10 70.0 7.1 81 62-151 291-374 (429)
58 COG0644 FixC Dehydrogenases (f 97.9 8.2E-05 1.8E-09 63.0 9.4 75 63-149 266-340 (396)
59 PLN02697 lycopene epsilon cycl 97.4 0.0017 3.7E-08 57.2 10.3 82 65-148 371-454 (529)
60 PF04820 Trp_halogenase: Trypt 97.3 0.00051 1.1E-08 59.4 5.6 71 62-145 312-382 (454)
61 PLN02463 lycopene beta cyclase 96.4 0.012 2.5E-07 51.0 7.2 43 64-106 292-334 (447)
62 PF05834 Lycopene_cycl: Lycope 94.2 0.27 5.9E-06 41.3 7.9 39 64-102 252-290 (374)
63 PF10819 DUF2564: Protein of u 71.1 7.5 0.00016 25.3 3.5 33 70-102 18-51 (79)
64 TIGR03169 Nterm_to_SelD pyridi 49.9 27 0.00058 28.9 4.2 43 64-106 270-312 (364)
65 PRK12770 putative glutamate sy 39.9 55 0.0012 27.0 4.5 35 65-104 315-349 (352)
66 PF14719 PID_2: Phosphotyrosin 38.9 1.5E+02 0.0033 22.6 6.4 53 89-158 104-156 (182)
67 COG1252 Ndh NADH dehydrogenase 38.8 58 0.0013 28.1 4.5 40 64-106 290-333 (405)
68 PTZ00318 NADH dehydrogenase-li 38.4 61 0.0013 27.6 4.7 42 65-106 308-349 (424)
69 PRK07233 hypothetical protein; 37.8 48 0.0011 27.7 4.0 37 65-104 395-431 (434)
70 TIGR01292 TRX_reduct thioredox 37.1 35 0.00076 26.8 2.9 35 64-102 264-298 (300)
71 PF04922 DIE2_ALG10: DIE2/ALG1 35.1 21 0.00045 30.4 1.3 22 65-87 222-244 (379)
72 PF01593 Amino_oxidase: Flavin 33.7 61 0.0013 26.4 3.9 32 66-100 418-449 (450)
73 PRK12416 protoporphyrinogen ox 33.4 68 0.0015 27.5 4.2 33 65-103 428-460 (463)
74 TIGR00562 proto_IX_ox protopor 32.0 69 0.0015 27.3 4.1 32 66-103 428-459 (462)
75 TIGR02733 desat_CrtD C-3',4' d 29.6 73 0.0016 27.6 3.8 32 66-102 459-490 (492)
76 TIGR02730 carot_isom carotene 29.4 75 0.0016 27.6 3.9 32 66-102 459-490 (493)
77 PF10340 DUF2424: Protein of u 28.1 40 0.00087 28.7 1.9 19 64-91 193-211 (374)
78 PF07687 M20_dimer: Peptidase 28.0 61 0.0013 21.4 2.5 36 65-103 8-43 (111)
79 PRK13984 putative oxidoreducta 27.1 1.1E+02 0.0024 27.4 4.6 35 65-105 568-602 (604)
80 PRK12810 gltD glutamate syntha 26.3 1.2E+02 0.0026 26.3 4.5 37 65-106 430-466 (471)
81 PRK09754 phenylpropionate diox 26.2 68 0.0015 27.0 3.0 38 64-102 266-308 (396)
82 PRK11749 dihydropyrimidine deh 25.2 1.4E+02 0.0031 25.6 4.8 37 65-106 417-453 (457)
83 TIGR03385 CoA_CoA_reduc CoA-di 25.0 78 0.0017 26.8 3.1 39 64-102 260-303 (427)
84 PF11328 DUF3130: Protein of u 24.9 2.2E+02 0.0048 19.1 6.1 62 71-145 18-79 (90)
85 KOG3035 Isoamyl acetate-hydrol 24.6 81 0.0018 25.0 2.8 30 64-94 5-34 (245)
86 PLN02576 protoporphyrinogen ox 23.4 1.3E+02 0.0029 25.9 4.3 33 66-104 455-487 (496)
87 KOG1515 Arylacetamide deacetyl 23.1 90 0.002 26.1 3.0 24 65-97 165-188 (336)
88 KOG3855 Monooxygenase involved 22.9 8.8 0.00019 33.2 -3.0 48 68-130 247-294 (481)
89 PRK11883 protoporphyrinogen ox 22.7 1.3E+02 0.0028 25.3 4.1 30 66-101 420-449 (451)
90 KOG1394 3-oxoacyl-(acyl-carrie 22.2 72 0.0016 27.3 2.2 27 70-96 286-313 (440)
91 TIGR02734 crtI_fam phytoene de 21.0 1.5E+02 0.0031 25.8 4.1 33 66-103 459-491 (502)
92 TIGR01318 gltD_gamma_fam gluta 20.9 1.9E+02 0.0042 25.0 4.8 35 65-104 431-465 (467)
93 TIGR01891 amidohydrolases amid 20.8 1.2E+02 0.0026 25.0 3.4 33 67-102 174-206 (363)
94 TIGR03467 HpnE squalene-associ 20.6 1.4E+02 0.0031 24.6 3.9 34 65-101 385-418 (419)
95 COG5654 Uncharacterized conser 20.5 51 0.0011 24.6 0.9 20 68-87 13-32 (163)
96 PRK12771 putative glutamate sy 20.2 1.8E+02 0.0039 25.9 4.5 37 65-106 409-445 (564)
No 1
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.92 E-value=2.6e-24 Score=182.07 Aligned_cols=121 Identities=23% Similarity=0.250 Sum_probs=103.4
Q ss_pred HHHHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHH
Q 035639 19 QKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGR 98 (177)
Q Consensus 19 ~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~ 98 (177)
+++++.|. +|+|.++++++.++. ...+++++.++.+ +|+.|||+|||||||+|+|+.|||+|+||+||.+|++
T Consensus 260 ~~l~~~~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~~~----~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~ 332 (414)
T TIGR03219 260 REMLDAFA-GWGDAARALLECIPA--PTLWALHDLAELP----GYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLAR 332 (414)
T ss_pred HHHHHHhc-CCCHHHHHHHHhCCC--CCceeeeeccccc----ceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHH
Confidence 33888998 999999999998763 3345666655543 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 035639 99 HIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLG 155 (177)
Q Consensus 99 ~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 155 (177)
+|.....+ .. +++.+|+.||++|++|+..+++.|+.++.+++..++..
T Consensus 333 ~L~~~~~~-------~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 380 (414)
T TIGR03219 333 LLGDTELE-------AG--DLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV 380 (414)
T ss_pred HHHhhccC-------cc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence 99875322 23 78999999999999999999999999999998877664
No 2
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.89 E-value=3.1e-22 Score=177.16 Aligned_cols=128 Identities=24% Similarity=0.407 Sum_probs=106.1
Q ss_pred HHHHHH-HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHH
Q 035639 15 PELIQK-VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDA 93 (177)
Q Consensus 15 ~~~~~~-~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA 93 (177)
++..++ +++.|+ +|++.++++++.++.+.+..+++++..+.. +|+.|||+|+|||||+|+|+.|||+|+||+||
T Consensus 320 ~~~~~e~L~~~f~-~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa 394 (668)
T PLN02927 320 PNGMKKRLFEIFD-GWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDS 394 (668)
T ss_pred chhHHHHHHHHhc-cCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHHHH
Confidence 445566 999998 999999999998876667778888877654 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035639 94 VVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIG 150 (177)
Q Consensus 94 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 150 (177)
..|+++|..+..+.. ...... .+..+|+.||++|++|+..++..++....++..
T Consensus 395 ~~La~~L~~~~~~~~-~~~~~~--~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~ 448 (668)
T PLN02927 395 FQLALELDEAWKQSV-ETNTPV--DVVSSLKRYEESRRLRVAIIHAMARMAAIMAST 448 (668)
T ss_pred HHHHHHHHHhhcccc-ccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988653210 011123 688999999999999999999998888777663
No 3
>PRK06753 hypothetical protein; Provisional
Probab=99.88 E-value=4.5e-22 Score=165.84 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=103.3
Q ss_pred HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHH
Q 035639 21 VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100 (177)
Q Consensus 21 ~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L 100 (177)
+.+.|+ +|++.++.+++......+..++++...+. ++|..|||+|||||||+|+|+.|||+|+||+||..|++.|
T Consensus 230 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 230 LQAYFN-HYPNEVREILDKQSETGILHHDIYDLKPL----KSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred HHHHHh-cCChHHHHHHHhCCcccceeecccccccc----ccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 788888 99999999998775444445555555544 3799999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 101 GNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
.. . +++++|+.|++.|++++..+++.++.+.++++..++....++
T Consensus 305 ~~------------~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r 349 (373)
T PRK06753 305 NA------------Y--DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALR 349 (373)
T ss_pred hh------------c--cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHH
Confidence 64 2 578999999999999999999999999999999888776665
No 4
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.88 E-value=4.5e-22 Score=167.82 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=94.0
Q ss_pred HHHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHH
Q 035639 20 KVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRH 99 (177)
Q Consensus 20 ~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~ 99 (177)
.+.+.+. +|++.+..+++.++ ....++++...+. +.|..|||+|||||||+|+|+.|||+|+||+||.+|+++
T Consensus 253 ~l~~~~~-~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~ 325 (400)
T PRK06475 253 HLKSIYA-DWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEA 325 (400)
T ss_pred HHHHHhc-CCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHH
Confidence 3778887 99999999998875 3456677665443 245789999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 035639 100 IGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLL 154 (177)
Q Consensus 100 L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~ 154 (177)
|.. . ++..+|+.||+.|++|++.++..++....+++..++.
T Consensus 326 L~~------------~--~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~ 366 (400)
T PRK06475 326 LDS------------D--DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIF 366 (400)
T ss_pred Hhc------------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 963 2 5678999999999999999999998666666655543
No 5
>PRK07236 hypothetical protein; Provisional
Probab=99.88 E-value=5.3e-22 Score=166.57 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=94.5
Q ss_pred HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHH
Q 035639 21 VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100 (177)
Q Consensus 21 ~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L 100 (177)
+.+.+.+.|+|.++.+++.+.. ...+++++.. .++|..|||+|||||||+|+|+.|||+|+||+||++|+++|
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L 339 (386)
T PRK07236 267 LRDDAAELLAPVFAELVEATAQ--PFVQAIFDLE-----VPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEAL 339 (386)
T ss_pred HHHHHHHhcCHHHHHHHhhCcC--chhhhhhccc-----CcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 7777763499999999998763 2334555433 24799999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035639 101 GNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGT 152 (177)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~ 152 (177)
.... . ++..+|+.||++|++|+..++..++.++..++..+
T Consensus 340 ~~~~----------~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~ 379 (386)
T PRK07236 340 AAAA----------G--DIDAALAAWEAERLAVGAAIVARGRRLGARLQAQG 379 (386)
T ss_pred Hhcc----------c--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 8631 2 57899999999999999999999999999887654
No 6
>PRK06847 hypothetical protein; Provisional
Probab=99.88 E-value=5.5e-22 Score=165.29 Aligned_cols=128 Identities=26% Similarity=0.349 Sum_probs=99.4
Q ss_pred CHHHHHH-HHHHHhccCCh-HHHHHHhhCCC-CCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHH
Q 035639 14 NPELIQK-VLEKYAKVLPP-FFLDIVQRSDV-STLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQAL 90 (177)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~p-~~~~~i~~~~~-~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al 90 (177)
..+...+ +.+.+. .|.+ .+..+++.... ..+..++++..... .+|+.|||+|||||||+|+|+.|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~grv~LiGDAaH~~~P~~GqG~n~ai 306 (375)
T PRK06847 232 EPDTLAALLRELLA-PFGGPVLQELREQITDDAQVVYRPLETLLVP----APWHRGRVVLIGDAAHATTPHLAQGAGMAI 306 (375)
T ss_pred ChHHHHHHHHHHHh-hcCchHHHHHHHhcCCccceeeccHhhccCC----CCccCCeEEEEechhccCCCCccccHHHHH
Confidence 3455566 777787 8886 56666654431 23334445443322 369999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---HHHHHH
Q 035639 91 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTL---LGGLLF 159 (177)
Q Consensus 91 ~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~---~~~~~~ 159 (177)
+||.+|++.|... . .++.+|+.|+++|++|++.++..++.++..++...+ +.+.++
T Consensus 307 eDA~~La~~L~~~-----------~--~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 365 (375)
T PRK06847 307 EDAIVLAEELARH-----------D--SLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMR 365 (375)
T ss_pred HHHHHHHHHHhhC-----------C--cHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHH
Confidence 9999999999762 3 688999999999999999999999999999876666 454444
No 7
>PRK07588 hypothetical protein; Provisional
Probab=99.87 E-value=6.5e-22 Score=166.11 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=100.6
Q ss_pred CHHHHHH-HHHHHhccCChHHHHHHhhCCCC-CcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHH
Q 035639 14 NPELIQK-VLEKYAKVLPPFFLDIVQRSDVS-TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALE 91 (177)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~p~~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~ 91 (177)
+.+...+ +.+.|. +|.+....+++..... .+...++ ... ..++|+.|||+|||||||+|+|+.|||+|+||+
T Consensus 231 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aie 304 (391)
T PRK07588 231 TPAEEKQLLRDQFG-DVGWETPDILAALDDVEDLYFDVV-SQI----RMDRWSRGRVALVGDAAACPSLLGGEGSGLAIT 304 (391)
T ss_pred CHHHHHHHHHHHhc-cCCccHHHHHHhhhcccchheeee-eee----ccCccccCCEEEEEccccCCCCccCCcHHHHHH
Confidence 4455566 888887 8877666666654321 1211111 111 234899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 92 DAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 92 DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
||.+|+++|.... . ....+|+.|++.|++++..++..++.+..++++++++...++
T Consensus 305 Da~~La~~L~~~~----------~--~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 360 (391)
T PRK07588 305 EAYVLAGELARAG----------G--DHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVR 360 (391)
T ss_pred HHHHHHHHHHhcc----------C--CHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHH
Confidence 9999999997521 2 577899999999999999999999999999999998887777
No 8
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.87 E-value=8.3e-22 Score=165.43 Aligned_cols=115 Identities=30% Similarity=0.413 Sum_probs=96.6
Q ss_pred HHHHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHH
Q 035639 19 QKVLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGR 98 (177)
Q Consensus 19 ~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~ 98 (177)
.++++.|. +|.|.++.+++... .+..+.+++..+. .+|..|||+|||||||+|+|+.|||+|+||+||.+|++
T Consensus 246 ~~l~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~ 318 (396)
T PRK08163 246 EEVLSYFE-GIHPRPRQMLDKPT--SWKRWATADREPV----AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGK 318 (396)
T ss_pred HHHHHHHc-CCChHHHHHHhcCC--ceeEccccCCCcc----cccccCcEEEEecccccCCcchhccHHHHHHHHHHHHH
Confidence 34889998 99999999987653 2333444444444 37999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035639 99 HIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGT 152 (177)
Q Consensus 99 ~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~ 152 (177)
+|... .. +++.+|+.|+++|++|+..++..++.+..+++..+
T Consensus 319 ~L~~~----------~~--~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~~ 360 (396)
T PRK08163 319 ALEGC----------DG--DAEAAFALYESVRIPRTARVVLSAREMGRIYHAKG 360 (396)
T ss_pred HHHhc----------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCC
Confidence 99752 13 67899999999999999999999999999998764
No 9
>PRK05868 hypothetical protein; Validated
Probab=99.86 E-value=2.8e-21 Score=161.81 Aligned_cols=125 Identities=17% Similarity=0.027 Sum_probs=96.1
Q ss_pred HHHHH-HHHHHhc-cCC-hHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHH
Q 035639 16 ELIQK-VLEKYAK-VLP-PFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALED 92 (177)
Q Consensus 16 ~~~~~-~~~~~~~-~~~-p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~D 92 (177)
+..++ +.+.|.. +|. +.+.++++..+ .+ .++..... .+++|++|||+|||||||+|+|+.|||+|+||+|
T Consensus 236 ~~~~~~l~~~f~~~~w~~~~l~~~~~~~~--~~-~~~~~~~~----~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleD 308 (372)
T PRK05868 236 EAQFAELQRRMAEDGWVRAQLLHYMRSAP--DF-YFDEMSQI----LMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLG 308 (372)
T ss_pred HHHHHHHHHHHhhCCCchHHHHhhcccCC--ce-eeccceEE----ecCCCCCCCeeeeecccccCCCccCccHHHHHHH
Confidence 33455 8888873 465 44444443322 22 12211112 2348999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 93 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 93 A~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
|++|+++|... .. +++++|+.||+.++|++.+.++.......++.+.+.+...++
T Consensus 309 a~~La~~L~~~----------~~--~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~ 363 (372)
T PRK05868 309 AYILAGELKAA----------GD--DYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERI 363 (372)
T ss_pred HHHHHHHHHhc----------CC--CHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHh
Confidence 99999999763 13 688999999999999999999999999999999998887664
No 10
>PRK07538 hypothetical protein; Provisional
Probab=99.85 E-value=6.7e-21 Score=161.27 Aligned_cols=107 Identities=25% Similarity=0.391 Sum_probs=89.8
Q ss_pred HHHHHHHHHhccCChH---HHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHH
Q 035639 17 LIQKVLEKYAKVLPPF---FLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDA 93 (177)
Q Consensus 17 ~~~~~~~~~~~~~~p~---~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA 93 (177)
..+++++.|. +|.+. +.++++.+. .+..+++++..+++ +|+.|||+|||||||+|+|++|||+|+||+||
T Consensus 252 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~----~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da 324 (413)
T PRK07538 252 DLEDFLPHFA-DWRFDWLDVPALIRAAE--AIYEYPMVDRDPLP----RWTRGRVTLLGDAAHPMYPVGSNGASQAILDA 324 (413)
T ss_pred CHHHHHHHhc-CCCCCcccHHHHHhcCc--ceeeccccccCCCC----cccCCcEEEEeeccCcCCCCCcccHHHHHHHH
Confidence 3444778887 88663 667776543 45667777766654 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 94 VVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYF 143 (177)
Q Consensus 94 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~ 143 (177)
.+|+++|... . +++++|+.||++|++++..++..++.
T Consensus 325 ~~La~~L~~~-----------~--~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 325 RALADALAAH-----------G--DPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred HHHHHHHHhc-----------C--CHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999873 2 57899999999999999999999998
No 11
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.85 E-value=3.9e-21 Score=162.09 Aligned_cols=102 Identities=21% Similarity=0.147 Sum_probs=83.8
Q ss_pred ccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHH
Q 035639 46 HWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDG 125 (177)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (177)
..++++... .++|..|||+|||||||+|+|+.|||+|+||+||.+|+++|...... ..+....++|+.
T Consensus 270 ~~~~l~~~~-----~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~-------g~~~~~~~~L~~ 337 (405)
T PRK05714 270 LCVPLRQRH-----AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAER-------GERLADVRVLSR 337 (405)
T ss_pred cEEecceee-----hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhc-------CCCcccHHHHHH
Confidence 345555432 35899999999999999999999999999999999999999876431 111123579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 126 YVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 126 Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
||++|++++..++..++.+.++|+..++..+.++
T Consensus 338 Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 371 (405)
T PRK05714 338 FERRRMPHNLALMAAMEGFERLFQADPLPLRWLR 371 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 9999999999999999999999999887665555
No 12
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.83 E-value=4.1e-20 Score=155.64 Aligned_cols=79 Identities=23% Similarity=0.171 Sum_probs=72.0
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|+.|||+|||||||+|+|+.|||+|+||+||.+|+++|..... + ....+|+.|++.|++|+..+++.
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~---------~--~~~~al~~Y~~~R~~r~~~~~~~ 342 (390)
T TIGR02360 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ---------E--GSSAGIEGYSARALARVWKAERF 342 (390)
T ss_pred ccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc---------c--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999987532 2 57789999999999999999999
Q ss_pred HHHHHHHHhh
Q 035639 141 SYFSGWLQIG 150 (177)
Q Consensus 141 s~~~~~~~~~ 150 (177)
|+.++.+++.
T Consensus 343 s~~~~~~~~~ 352 (390)
T TIGR02360 343 SWWMTSLLHR 352 (390)
T ss_pred HHHHHHHhcC
Confidence 9999988774
No 13
>PRK07045 putative monooxygenase; Reviewed
Probab=99.83 E-value=2.7e-20 Score=156.20 Aligned_cols=124 Identities=21% Similarity=0.167 Sum_probs=95.4
Q ss_pred HHHHHhccCC-hHHHHHHhhCCCC-CcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHH
Q 035639 21 VLEKYAKVLP-PFFLDIVQRSDVS-TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGR 98 (177)
Q Consensus 21 ~~~~~~~~~~-p~~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~ 98 (177)
+.+.+. .|. +.+.++++..... .+..+++.. ...++|+.|||+|||||||+|+|++|||+|+||+||.+|++
T Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~ 317 (388)
T PRK07045 244 LLARLN-EFVGDESADAMAAIGAGTAFPLIPLGR-----MNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGA 317 (388)
T ss_pred HHHHHh-hhcCccchHHHhccCcccccceeecCc-----cccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHH
Confidence 666666 543 5555555544321 111122221 12358999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 99 HIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 99 ~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
.|.....+ +..++.+|+.|+++|++++..++..++.+.+.++.+.+..++..
T Consensus 318 ~L~~~~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (388)
T PRK07045 318 CLDLHLSG---------QIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFR 369 (388)
T ss_pred HHHhhcCC---------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHH
Confidence 99886532 12578899999999999999999999999999999888887764
No 14
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.83 E-value=2.7e-20 Score=154.28 Aligned_cols=142 Identities=32% Similarity=0.439 Sum_probs=111.7
Q ss_pred CCCHHHHHH-HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHH
Q 035639 12 AGNPELIQK-VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQAL 90 (177)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al 90 (177)
...++..++ ..+.++ .|+..+.++++.+..+.+...++++++|++....+-..++|+|+|||||+|+|+.|||+|+|+
T Consensus 234 ~~e~~~l~~~~~~v~~-~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ 312 (420)
T KOG2614|consen 234 FDEPEKLKKTSLEVVD-FFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAF 312 (420)
T ss_pred cCCHHHHhhhHHHHHH-HhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchH
Confidence 356888888 778887 999999999999998888888899999987655566778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 035639 91 EDAVVLGRHIGNLLIKTKGHIATTG-----DNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLL 154 (177)
Q Consensus 91 ~DA~~La~~L~~~~~~~~~~~~~~~-----~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~ 154 (177)
||+.+|+++|.++....+...++.+ ..-+..++..|...|..|.-++...+...+-+....+|+
T Consensus 313 ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l 381 (420)
T KOG2614|consen 313 EDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPL 381 (420)
T ss_pred HHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccch
Confidence 9999999999998663211111111 012678899999999888777766665555555555555
No 15
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.83 E-value=2.1e-20 Score=163.57 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=78.2
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
+++|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|+.++.+ . ..+.+|+.||++|+++++.++.
T Consensus 293 a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--------~--~~~~lL~~Ye~eR~p~~~~~~~ 362 (547)
T PRK08132 293 MDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG--------R--APDSLLDSYASEREFAADENIR 362 (547)
T ss_pred ecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999998764 3 5678999999999999999999
Q ss_pred HHHHHHHHHhhcchHHH
Q 035639 140 GSYFSGWLQIGGTLLGG 156 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~ 156 (177)
.+..+..+++..++...
T Consensus 363 ~s~~~~~~~~~~~~~~~ 379 (547)
T PRK08132 363 NSTRSTDFITPKSPVSR 379 (547)
T ss_pred HHHHHHhhhCCCCHHHH
Confidence 99999988887666543
No 16
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=2.6e-20 Score=156.70 Aligned_cols=90 Identities=29% Similarity=0.329 Sum_probs=82.4
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.|+|++|||+|+||+||.+|++.|...... .. + ..+|+.|+++|++++..++.
T Consensus 272 a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~-------~~--~-~~~L~~Y~~~R~~~~~~~~~ 341 (387)
T COG0654 272 AERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRP-------GA--D-AAALAAYEARRRPRAEAIQK 341 (387)
T ss_pred hhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhc-------Cc--c-HHHHHHHHHhhhhHHHHHHH
Confidence 34788899999999999999999999999999999999999998652 12 3 78999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.+.+....+..++++
T Consensus 342 ~s~~~~~~~~~~~~~~~~~r 361 (387)
T COG0654 342 LSRALGRLFSADGPFARFLR 361 (387)
T ss_pred HHHHHhhhhccCCcHHHHHH
Confidence 99999999999999998887
No 17
>PRK06996 hypothetical protein; Provisional
Probab=99.82 E-value=6.2e-20 Score=154.76 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=77.6
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|..|||+|||||||+|+|+.|||+|+||+||.+|+++|... . ....+|+.|+++|++++..++..
T Consensus 286 ~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~-----------~--~~~~~L~~Y~~~R~~~~~~~~~~ 352 (398)
T PRK06996 286 RTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH-----------G--ATPLALATFAARRALDRRVTIGA 352 (398)
T ss_pred cceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc-----------C--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999752 1 35577999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++.+.++|+..++....++
T Consensus 353 s~~l~~~~~~~~~~~~~~R 371 (398)
T PRK06996 353 TDLLPRLFTVDSRPLAHLR 371 (398)
T ss_pred HHHHHHHHcCCchHHHHHH
Confidence 9999999998887776665
No 18
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.81 E-value=1.2e-19 Score=152.31 Aligned_cols=88 Identities=18% Similarity=0.076 Sum_probs=77.9
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
+++|..|||+|+|||||+|+|+.|||+|+||+||.+|++.|... .. ..+++|+.||++|++++..++.
T Consensus 273 ~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~----------~~--~~~~~L~~Ye~~R~~~~~~~~~ 340 (384)
T PRK08849 273 AQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ----------GV--LNDASFARYERRRRPDNLLMQT 340 (384)
T ss_pred cchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc----------CC--CcHHHHHHHHHHHhHHHHHHHH
Confidence 45899999999999999999999999999999999999998642 12 4678999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++|+...+....++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~R 360 (384)
T PRK08849 341 GMDLFYKTFSNSLTPLKFVR 360 (384)
T ss_pred HHHHHHHHhcCCchHHHHHH
Confidence 99999999998867665555
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.81 E-value=7.7e-20 Score=159.76 Aligned_cols=90 Identities=26% Similarity=0.271 Sum_probs=81.4
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|..+..+ . ..+.+|+.|+++|++++..++.
T Consensus 280 a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g--------~--~~~~~L~~Ye~eR~p~~~~~~~ 349 (538)
T PRK06183 280 ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRG--------R--AGDALLDTYEQERRPHARAMID 349 (538)
T ss_pred hhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999987653 2 5678999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.+..+.++++..++....++
T Consensus 350 ~s~~~~~~~~~~~~~~~~~R 369 (538)
T PRK06183 350 LAVRLGRVICPTDRLAAALR 369 (538)
T ss_pred HHHHhhhhccCCCHHHHHHH
Confidence 99999999998888776555
No 20
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.80 E-value=1.8e-19 Score=152.16 Aligned_cols=93 Identities=25% Similarity=0.258 Sum_probs=80.5
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||+|+|+.|||+|+||+||.+|+++|...... ..+.....+|+.|+++|++++..++.
T Consensus 276 ~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~ 348 (405)
T PRK08850 276 ARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQ-------GRDIGLKRNLRGYERWRKAEAAKMIA 348 (405)
T ss_pred ccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhHHHHHHHH
Confidence 35899999999999999999999999999999999999999986532 11113568999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++|+..++..+.++
T Consensus 349 ~~~~l~~~~~~~~~~~~~~R 368 (405)
T PRK08850 349 AMQGFRDLFSGSNPAKKLVR 368 (405)
T ss_pred HHHHHHHHHCCCchHHHHHH
Confidence 99999999998888765554
No 21
>PRK08013 oxidoreductase; Provisional
Probab=99.80 E-value=1.7e-19 Score=152.28 Aligned_cols=93 Identities=23% Similarity=0.194 Sum_probs=78.9
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|...... ..+.....+|+.|+++|++++..++.
T Consensus 276 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~ 348 (400)
T PRK08013 276 ARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQ-------GKDIGQHLYLRRYERSRKHSAALMLA 348 (400)
T ss_pred cccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999976532 11111235799999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++|++.+++...++
T Consensus 349 ~~~~~~~l~~~~~~~~~~~R 368 (400)
T PRK08013 349 GMQGFRDLFAGNNPAKKLLR 368 (400)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999998888765544
No 22
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.80 E-value=3.5e-19 Score=149.64 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=80.6
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|.++... ..+.....+|++|+++|+++...++.
T Consensus 276 ~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~-------~~~~~~~~~l~~y~~~R~~~~~~~~~ 348 (392)
T PRK08773 276 VQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHAR-------RADWAAPHRLQRWARTRRSDNTVAAY 348 (392)
T ss_pred hhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999987542 11112357899999999999998888
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.+..+.++|....+..+.++
T Consensus 349 ~~~~l~~~f~~~~~~~~~~r 368 (392)
T PRK08773 349 GFDAINRVFSNDEMHLTLLR 368 (392)
T ss_pred HHHHHHHHHcCCChHHHHHH
Confidence 88899999999999888777
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.80 E-value=3.8e-19 Score=150.18 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=78.6
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|+.|||+|||||||.|+|+.|||+|+||+||.+|+++|...... ..+.....+|+.|++.|++++..++..
T Consensus 289 ~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 361 (415)
T PRK07364 289 DRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQR-------GEDIGSLAVLKRYERWRKRENWLILGF 361 (415)
T ss_pred hhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999876532 111112479999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++.+.++++..+++...++
T Consensus 362 s~~~~~~~~~~~~~~~~~r 380 (415)
T PRK07364 362 TDLLDRLFSNQWWPLVVVR 380 (415)
T ss_pred HHHHHHHHcCCchHHHHHH
Confidence 9999999998887665554
No 24
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.79 E-value=3.2e-19 Score=150.06 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=73.3
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|+.|||+|||||||.|+|++|||+|+||+||.+|+++|.....+ ..+++|+.|+++|++|+..+++
T Consensus 273 ~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-----------~~~~~L~~Ye~~r~~r~~~~~~ 341 (392)
T PRK08243 273 AEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-----------GDTALLDAYSATALRRVWKAER 341 (392)
T ss_pred eccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999987542 4568999999999999999999
Q ss_pred HHHHHHHHHhh
Q 035639 140 GSYFSGWLQIG 150 (177)
Q Consensus 140 ~s~~~~~~~~~ 150 (177)
.++.+.++++.
T Consensus 342 ~~~~~~~~~~~ 352 (392)
T PRK08243 342 FSWWMTSMLHR 352 (392)
T ss_pred HHHHHHHHhhc
Confidence 99999999886
No 25
>PRK06185 hypothetical protein; Provisional
Probab=99.79 E-value=6e-19 Score=148.70 Aligned_cols=124 Identities=18% Similarity=0.120 Sum_probs=95.4
Q ss_pred HHHHHhccCChHHHHHHhhCC-CCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHH
Q 035639 21 VLEKYAKVLPPFFLDIVQRSD-VSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRH 99 (177)
Q Consensus 21 ~~~~~~~~~~p~~~~~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~ 99 (177)
+.+.+. ++.|.+...+.... ......+++... ..++|..+||+|+|||||.++|++|||+|+||+||..|++.
T Consensus 244 ~~~~~~-~~~p~~~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~ 317 (407)
T PRK06185 244 FRERVA-ELAPELADRVAELKSWDDVKLLDVRVD-----RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANI 317 (407)
T ss_pred HHHHHH-HhCccHHHHHhhcCCccccEEEEEecc-----ccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHH
Confidence 777777 77777666665432 122333333221 23479999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHH
Q 035639 100 IGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGT--LLGGLLF 159 (177)
Q Consensus 100 L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~--~~~~~~~ 159 (177)
|...... .+ ..+.+|+.|+++|++++..++..++.+.++|.... +..+.++
T Consensus 318 l~~~~~~-------~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 370 (407)
T PRK06185 318 LAEPLRR-------GR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGP 370 (407)
T ss_pred HHHHhcc-------CC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCC
Confidence 9987643 11 23489999999999999999999999999998877 6554433
No 26
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.79 E-value=3.1e-19 Score=149.42 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=79.9
Q ss_pred cccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHH
Q 035639 45 LHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 124 (177)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~ 124 (177)
+..++++.. . .++|+.|||+|+|||||.|+|+.|||+|+||+||.+|++.|.. . .+|+
T Consensus 257 ~~~~~l~~~-~----~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~---------------~--~~L~ 314 (374)
T PRK06617 257 ISSFPLKAR-I----ANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN---------------N--GTLQ 314 (374)
T ss_pred eeEEEeeee-e----ccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC---------------c--chHH
Confidence 444555544 2 3489999999999999999999999999999999999998832 1 4799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 125 GYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 125 ~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
.||++|++++..++..++.+.++|+...+....++
T Consensus 315 ~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R 349 (374)
T PRK06617 315 EYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLR 349 (374)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998888776665
No 27
>PTZ00367 squalene epoxidase; Provisional
Probab=99.78 E-value=3.7e-18 Score=149.76 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=91.5
Q ss_pred HHHH-HHHHHhccCChHHHHHHhh-CCC-CCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHHH
Q 035639 17 LIQK-VLEKYAKVLPPFFLDIVQR-SDV-STLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDA 93 (177)
Q Consensus 17 ~~~~-~~~~~~~~~~p~~~~~i~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA 93 (177)
+..+ +.+.+.+.+++.+++.+.. ... ..+..++....++. +|..+||+|||||||.|+|+.|||+|+||+||
T Consensus 290 ~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~-----~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA 364 (567)
T PTZ00367 290 EQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPA-----FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDC 364 (567)
T ss_pred HHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCc-----cCCCCCEEEEEcccCCCCCcccccHHHHHHHH
Confidence 3445 6665554567777765533 221 23445555555432 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035639 94 VVLGRHIGNLLIKTKGHIATTGDNNVAQAID----GYVKERKWRVTGLVIGSYFSGWLQIG 150 (177)
Q Consensus 94 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~----~Ye~~R~~r~~~~~~~s~~~~~~~~~ 150 (177)
.+|+++|..+.... +...+ +...+..+|+ .|++.|++++..++..++.+.++|..
T Consensus 365 ~~La~~L~~~~~~~-~~d~~-d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 365 IRLAKSLTGIKSLR-SIDQN-EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS 423 (567)
T ss_pred HHHHHHHHhhhccc-CCCch-hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence 99999998643210 00000 0114566677 99999999999999999999999987
No 28
>PLN02985 squalene monooxygenase
Probab=99.78 E-value=3.8e-18 Score=148.42 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHH-HHHHHhccCChHHHHHHhhCCCC--CcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHH
Q 035639 16 ELIQK-VLEKYAKVLPPFFLDIVQRSDVS--TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALED 92 (177)
Q Consensus 16 ~~~~~-~~~~~~~~~~p~~~~~i~~~~~~--~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~D 92 (177)
.+.++ +.+.+.+.+++.+++.+.....+ .+...+....+ ...|..+||+|||||||+|+|+.|||+|+||+|
T Consensus 278 ~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~-----~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleD 352 (514)
T PLN02985 278 GEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMS-----ATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSD 352 (514)
T ss_pred hhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccccc-----ccccCCCCEEEEecccccCCCCccccHhHHHHH
Confidence 34445 44334335667777766532211 23333333222 235678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHH
Q 035639 93 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIG-GTLLGGLLF 159 (177)
Q Consensus 93 A~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~-~~~~~~~~~ 159 (177)
|.+|+++|.....- .... .+.++|+.|+++|++++..++..|+.+..+|.. .+.-.+.++
T Consensus 353 A~vLa~lL~~~~~~-----~~~~--~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~ 413 (514)
T PLN02985 353 ILILRRLLQPLSNL-----GNAN--KVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMR 413 (514)
T ss_pred HHHHHHHhhhcccc-----cchh--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999874210 0012 678999999999999999999999999999974 455455555
No 29
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.78 E-value=7.9e-19 Score=147.27 Aligned_cols=93 Identities=15% Similarity=-0.010 Sum_probs=80.8
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|.+.... ..+.....+|+.|+++|+++...++.
T Consensus 275 ~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~ 347 (391)
T PRK08020 275 ALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSY-------GEAWASEAVLKRYQRRRMADNLLMQS 347 (391)
T ss_pred hhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999976431 11113568999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++|..+.+..+.++
T Consensus 348 ~~~~l~~~~~~~~~~~~~~R 367 (391)
T PRK08020 348 GMDLFYAGFSNNLPPLRFAR 367 (391)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999999888887777
No 30
>PRK06834 hypothetical protein; Provisional
Probab=99.78 E-value=5.7e-19 Score=152.78 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=77.9
Q ss_pred cccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 035639 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLV 138 (177)
Q Consensus 59 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~ 138 (177)
.+++|..|||+|+|||||.|+|++|||+|++|+||.+|+++|+.++.+ . ..+.+|+.||++|++++..++
T Consensus 258 ~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g--------~--~~~~lLd~Ye~eRrp~~~~~~ 327 (488)
T PRK06834 258 QAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG--------T--SPESLLDTYHAERHPVAARVL 327 (488)
T ss_pred ecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999998764 2 567899999999999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHH
Q 035639 139 IGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 139 ~~s~~~~~~~~~~~~~~~~~~ 159 (177)
..+.....++. .++....++
T Consensus 328 ~~t~~~~~~~~-~~~~~~~lR 347 (488)
T PRK06834 328 RNTMAQVALLR-PDDRTEALR 347 (488)
T ss_pred HHHHHHHHhhc-CChHHHHHH
Confidence 99988887776 566444433
No 31
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.78 E-value=8.1e-19 Score=147.52 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=80.2
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|+.|||+|||||||.++|+.|||+|+||+||.+|+++|...... ..+....++|+.||++|++++..++.
T Consensus 274 ~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Ye~~R~~~~~~~~~ 346 (403)
T PRK07333 274 ARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARL-------GLDIGSLDVLERYQRWRRFDTVRMGV 346 (403)
T ss_pred hhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHhHHHHHHHH
Confidence 34899999999999999999999999999999999999999987542 01114678999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++++..++....++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~r 366 (403)
T PRK07333 347 TTDVLNRLFSNDSTLLRSVR 366 (403)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999998887665544
No 32
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.77 E-value=1.4e-19 Score=151.58 Aligned_cols=89 Identities=18% Similarity=0.155 Sum_probs=79.8
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|..|||+|+|||||.++|++|||+|+||+||..|+++|..... +.....+|+.|+++|++++..++..
T Consensus 275 ~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~----------~~~~~~~L~~Y~~~R~~~~~~~~~~ 344 (388)
T PRK07494 275 HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE----------DPGSAAVLAAYDRARRPDILSRTAS 344 (388)
T ss_pred HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC----------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999987422 1146789999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++.+.+.|....+..+.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~R 363 (388)
T PRK07494 345 VDLLNRSLLSDFLPVQDLR 363 (388)
T ss_pred HHHHHHHHcCCchHHHHHH
Confidence 9999999998888887776
No 33
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.77 E-value=2.3e-18 Score=146.98 Aligned_cols=93 Identities=19% Similarity=0.093 Sum_probs=81.6
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.++|++|||+|+||+||.+|+++|...... ..+.....+|+.|+++|++++..++.
T Consensus 327 ~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~v~~ 399 (437)
T TIGR01989 327 ADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSV-------GADIGSISSLKPYERERYAKNVVLLG 399 (437)
T ss_pred hhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999987643 11111246899999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.++|..+.+....++
T Consensus 400 ~t~~l~~l~~~~~~~~~~~R 419 (437)
T TIGR01989 400 LVDKLHKLYATDFPPVVALR 419 (437)
T ss_pred HHHHHHHHHcCCccHHHHHH
Confidence 99999999999999887777
No 34
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.77 E-value=3.9e-18 Score=142.14 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=79.4
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|+.|||+|+|||||.|+|+.|||+|+||+||.+|++.|...... ..+...+.+|+.|+++|++++..++..
T Consensus 271 ~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~-------~~~~~~~~~l~~y~~~r~~~~~~~~~~ 343 (385)
T TIGR01988 271 KRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRR-------GEDIGSPRVLQRYERRRRFDNAAMLGA 343 (385)
T ss_pred hheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhc-------CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999986532 111124789999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++...+++...++....++
T Consensus 344 ~~~~~~~~~~~~~~~~~~r 362 (385)
T TIGR01988 344 TDGLNRLFSNDFPPLRLLR 362 (385)
T ss_pred HHHHHHHHcCCCcHHHHHH
Confidence 9999999998887665554
No 35
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.77 E-value=5.8e-19 Score=144.45 Aligned_cols=72 Identities=33% Similarity=0.387 Sum_probs=63.3
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
..+|+.|||+|||||||+|+|+.|||+|+||+||..|++.|.....+ . ..+.+|+.|+++|++|++++++
T Consensus 285 ~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g--------~--~~~~~l~~Y~~~r~~~~~~~~~ 354 (356)
T PF01494_consen 285 ADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG--------E--ASEEALKAYEQERRPRARKAVQ 354 (356)
T ss_dssp ESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT--------S--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC--------C--cHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999998764 3 5678999999999999999987
Q ss_pred HH
Q 035639 140 GS 141 (177)
Q Consensus 140 ~s 141 (177)
.+
T Consensus 355 ~~ 356 (356)
T PF01494_consen 355 FD 356 (356)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 36
>PRK06126 hypothetical protein; Provisional
Probab=99.76 E-value=1.1e-18 Score=152.65 Aligned_cols=81 Identities=25% Similarity=0.188 Sum_probs=72.4
Q ss_pred cccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 035639 59 FFGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLV 138 (177)
Q Consensus 59 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~ 138 (177)
.+++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|+.+..+ . ..+++|+.|+++|++++..++
T Consensus 296 ~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~--------~--~~~~lL~~Y~~eR~p~~~~~~ 365 (545)
T PRK06126 296 VADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG--------W--AGPALLDSYEAERRPIAARNT 365 (545)
T ss_pred ehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC--------C--CcHHHHhhhHHHhhHHHHHHH
Confidence 345899999999999999999999999999999999999999987653 2 457899999999999999999
Q ss_pred HHHHHHHHHHh
Q 035639 139 IGSYFSGWLQI 149 (177)
Q Consensus 139 ~~s~~~~~~~~ 149 (177)
..+......+.
T Consensus 366 ~~s~~~~~~~~ 376 (545)
T PRK06126 366 DYARRNADALG 376 (545)
T ss_pred HHHHHHHHHhc
Confidence 99998876654
No 37
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.76 E-value=2.3e-18 Score=143.82 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=78.6
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|||||||+|+|+.|||+|+||+||..|+++|...... . ..+++|+.|+++|+++...++.
T Consensus 270 ~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~--------~--~~~~~l~~Y~~~r~~~~~~~~~ 339 (382)
T TIGR01984 270 AETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARID--------L--GTYALLQEYLRRRQFDQFITIG 339 (382)
T ss_pred hhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccC--------c--cCHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999876421 1 4578999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++.+.+++...++....++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~r 359 (382)
T TIGR01984 340 LTDGLNRLFSNHIPLLRALR 359 (382)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999998876655444
No 38
>PRK09126 hypothetical protein; Provisional
Probab=99.76 E-value=2.2e-18 Score=144.47 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=80.2
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|..+... ..+...+.+|+.|+++|++++..++..
T Consensus 275 ~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~-------~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 347 (392)
T PRK09126 275 HRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARR-------GQDIGAASLLERYERKHRLATRPLYHA 347 (392)
T ss_pred HHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhc-------CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999987642 111134789999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++.+.++++..+++.+.++
T Consensus 348 ~~~~~~~~~~~~~~~~~~r 366 (392)
T PRK09126 348 TNAIAALYTDDRPPARLLR 366 (392)
T ss_pred HHHHHHHHCCCchHHHHHH
Confidence 9999999998887766655
No 39
>PRK06184 hypothetical protein; Provisional
Probab=99.76 E-value=1.7e-18 Score=150.11 Aligned_cols=80 Identities=26% Similarity=0.213 Sum_probs=72.4
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
+++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|+.++.+ ..+.+|+.||++|++++..++.
T Consensus 275 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-----------~~~~lL~~Ye~eR~p~~~~~~~ 343 (502)
T PRK06184 275 ADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-----------APEALLDTYEEERRPVAAAVLG 343 (502)
T ss_pred hhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999987652 4567899999999999999999
Q ss_pred HHHHHHHHHhh
Q 035639 140 GSYFSGWLQIG 150 (177)
Q Consensus 140 ~s~~~~~~~~~ 150 (177)
.++.....+..
T Consensus 344 ~s~~~~~~~~~ 354 (502)
T PRK06184 344 LSTELLDAIKR 354 (502)
T ss_pred HHHHHHHHHhH
Confidence 99998877653
No 40
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.76 E-value=2.3e-18 Score=155.94 Aligned_cols=123 Identities=20% Similarity=0.104 Sum_probs=94.2
Q ss_pred HHHHHH-HHHHHhccCChHHHHHHhhCCCCCcccccccccCCCcccccCccCCc----EEEeccCCCcCCCCcchhhhhH
Q 035639 15 PELIQK-VLEKYAKVLPPFFLDIVQRSDVSTLHWAPLMFRHPWNVFFGNLSKGN----VTVAGDAMHPMTPELGQGGCQA 89 (177)
Q Consensus 15 ~~~~~~-~~~~~~~~~~p~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~gr----v~LiGDAAH~~~P~~GqG~n~A 89 (177)
.+...+ +.+.|. +|.+.. .++..........|.++.... .++|+.|| |+|+|||||+|+|+.|||+|+|
T Consensus 219 ~~~~~~~l~~~f~-~~~~~~-~li~~~~~~~~~~w~~~~~~~----~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~a 292 (765)
T PRK08255 219 QEESIAFCEKLFA-DYLDGH-PLMSNASHLRGSAWINFPRVV----CERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLA 292 (765)
T ss_pred HHHHHHHHHHHhH-HhcCCC-cccccccccccceeeecceec----cCCCccCCCcccEEEEEcCcccCCCCcchhHHHH
Confidence 445556 888888 887753 344443211112233333222 34899999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 035639 90 LEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLG 155 (177)
Q Consensus 90 l~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 155 (177)
|+||.+|+++|.... . .++.+|+.||++|++|+..++..++.+.++|...++..
T Consensus 293 ieDa~~La~~L~~~~----------~--~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 346 (765)
T PRK08255 293 LEDAIELARCLHEHP----------G--DLPAALAAYEEERRVEVLRIQNAARNSTEWFENVERYA 346 (765)
T ss_pred HHHHHHHHHHHHHcc----------c--cHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecchhh
Confidence 999999999998741 2 57899999999999999999999999998888765544
No 41
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.75 E-value=8e-18 Score=149.64 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=72.6
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYF 143 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~ 143 (177)
..|||+|+|||||.++|++|||+|++|+||++|+++|+.++.+ . ..+.+|+.|+.+|+++++.++..++.
T Consensus 338 r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g--------~--a~~~lL~tYe~ERrp~a~~li~~~~~ 407 (634)
T PRK08294 338 RLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG--------R--SPPELLHTYSAERQAIAQELIDFDRE 407 (634)
T ss_pred ccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999998764 3 56789999999999999999999999
Q ss_pred HHHHHhhcc
Q 035639 144 SGWLQIGGT 152 (177)
Q Consensus 144 ~~~~~~~~~ 152 (177)
..++|....
T Consensus 408 ~~~l~~~~~ 416 (634)
T PRK08294 408 WSTMMAAPP 416 (634)
T ss_pred HHHHhccCC
Confidence 999997653
No 42
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.74 E-value=1e-17 Score=140.40 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=79.0
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|..+..+ ..+.....+|+.|+++|++++..++..
T Consensus 277 ~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~-------~~~~~~~~~l~~Y~~~R~~~~~~~~~~ 349 (395)
T PRK05732 277 AQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALAR-------GEDIGDYAVLQRYQQRRQQDREATIGF 349 (395)
T ss_pred hhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999876543 111123578999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
++.+.+++..+.++...++
T Consensus 350 ~~~~~~~~~~~~~~~~~~r 368 (395)
T PRK05732 350 TDGLVRLFANRWAPLVVGR 368 (395)
T ss_pred HHHHHHHHcCCChHHHHHH
Confidence 9999999998877665555
No 43
>PRK08244 hypothetical protein; Provisional
Probab=99.73 E-value=6.8e-18 Score=146.02 Aligned_cols=82 Identities=27% Similarity=0.210 Sum_probs=73.1
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.++|..|||+|+|||||.++|++|||+|+||+||.+|+++|+.++.+ . ..+.+|+.||++|++++..++.
T Consensus 266 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g--------~--~~~~lL~~Ye~eR~~~~~~~~~ 335 (493)
T PRK08244 266 AERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG--------W--APDWLLDSYHAERHPVGTALLR 335 (493)
T ss_pred HhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC--------C--CCchhhhhhHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999988753 2 4567899999999999999999
Q ss_pred HHHHHHHHHhhc
Q 035639 140 GSYFSGWLQIGG 151 (177)
Q Consensus 140 ~s~~~~~~~~~~ 151 (177)
.++....++...
T Consensus 336 ~~~~~~~~~~~~ 347 (493)
T PRK08244 336 NTEVQTKLFDFT 347 (493)
T ss_pred HhHHHHHHhcCC
Confidence 998888887543
No 44
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=139.38 Aligned_cols=92 Identities=22% Similarity=0.170 Sum_probs=79.2
Q ss_pred ccCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 60 FGNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 60 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
.+.|+.|||+|||||||.|+|+.|||+|+||+||.+|+++|...... .+....++|+.||++|++++..++.
T Consensus 274 ~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~--------~~~~~~~~l~~Ye~~R~~~~~~~~~ 345 (388)
T PRK07608 274 VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPF--------RDLGDLRLLRRYERARREDILALQV 345 (388)
T ss_pred hhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhcc--------CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999875321 0112347999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 035639 140 GSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 140 ~s~~~~~~~~~~~~~~~~~~ 159 (177)
.++...++++.+++....++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~r 365 (388)
T PRK07608 346 ATDGLQRLFALPGPLARWLR 365 (388)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999998887776655
No 45
>PRK07190 hypothetical protein; Provisional
Probab=99.73 E-value=2.6e-17 Score=142.38 Aligned_cols=82 Identities=23% Similarity=0.194 Sum_probs=72.5
Q ss_pred ccccCcc-CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 035639 58 VFFGNLS-KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTG 136 (177)
Q Consensus 58 ~~~~~~~-~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~ 136 (177)
+.+++|. .|||+|+|||||.++|++|||+|++|+||.+|+++|+.+..+ . ..+..|+.|+.+|++.++.
T Consensus 266 r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g--------~--a~~~lLdtY~~eR~p~a~~ 335 (487)
T PRK07190 266 SVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH--------G--ASPELLQSYEAERKPVAQG 335 (487)
T ss_pred EehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHH
Confidence 3456786 799999999999999999999999999999999999988764 2 4578999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 035639 137 LVIGSYFSGWLQI 149 (177)
Q Consensus 137 ~~~~s~~~~~~~~ 149 (177)
++..++...+...
T Consensus 336 vl~~t~~~~~~~~ 348 (487)
T PRK07190 336 VIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHHhhcc
Confidence 9999998877654
No 46
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.48 E-value=8e-13 Score=105.80 Aligned_cols=133 Identities=20% Similarity=0.079 Sum_probs=105.7
Q ss_pred HHHHHH-HHHHHhccCChHHHHHHhhCC-CCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHH
Q 035639 15 PELIQK-VLEKYAKVLPPFFLDIVQRSD-VSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALED 92 (177)
Q Consensus 15 ~~~~~~-~~~~~~~~~~p~~~~~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~D 92 (177)
..++++ +++.+....++.+++.+..+- .+.+...|....++.. -...+++++|||++..+|.+|+|++.|+.|
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~-----~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASP-----NWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCC-----CCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 457788 888887678888888766533 3455555555555442 345779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 035639 93 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 93 A~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (177)
+..|++.|.....= .++..+.++++.|..+|++....+...+.....+|..+++..+.++
T Consensus 157 v~lL~~lL~~~~dl-------~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr 216 (276)
T PF08491_consen 157 VVLLRDLLSPIPDL-------SDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALR 216 (276)
T ss_pred HHHHHHHHhhhcCc-------ccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999986110 1122678899999999999999999999999999999888887777
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.14 E-value=2.8e-10 Score=95.79 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=65.6
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
++|..+||+|||||||.++|++|+|++.||.++..+|+.|.+.+.. .....|+.|++..+......+..
T Consensus 259 ~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~-----------~~~~~L~~Y~~~~~~~~~~~~~~ 327 (388)
T TIGR02023 259 PRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN-----------GDATDLRHYERKFMKLYGTTFRV 327 (388)
T ss_pred ccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999999999999999999999987653 12467999999988877766677
Q ss_pred HHHHHHHHh
Q 035639 141 SYFSGWLQI 149 (177)
Q Consensus 141 s~~~~~~~~ 149 (177)
.+....++.
T Consensus 328 ~~~~~~~~~ 336 (388)
T TIGR02023 328 LRVLQMVYY 336 (388)
T ss_pred HHHHHHHHc
Confidence 766666664
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.12 E-value=3e-11 Score=96.82 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=37.5
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L 100 (177)
.+|+.+||+|+|||||.++|+.|||+|+||+||..+|+.|
T Consensus 256 ~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 256 DKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999999999999864
No 49
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.08 E-value=1.2e-10 Score=97.12 Aligned_cols=92 Identities=21% Similarity=0.162 Sum_probs=79.2
Q ss_pred cCccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 61 GNLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 61 ~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
+.+...|+.|+|||||-++|..|||.|+++.|+..|...|+.+... +.|.....-|+.|+++|.+.--.+...
T Consensus 365 ~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~-------g~DlgS~~~L~~y~~~~~~~N~~ll~~ 437 (481)
T KOG3855|consen 365 DEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVS-------GLDLGSVEHLEPYERERLQHNYVLLGA 437 (481)
T ss_pred HHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHh-------cccccchhhhhHHHHHHhhhcchHHHH
Confidence 3578899999999999999999999999999999999999998764 232223466999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHH
Q 035639 141 SYFSGWLQIGGTLLGGLLF 159 (177)
Q Consensus 141 s~~~~~~~~~~~~~~~~~~ 159 (177)
.....++|+...|..-.++
T Consensus 438 vdkl~klY~t~~p~vV~~r 456 (481)
T KOG3855|consen 438 VDKLHKLYATSAPPVVLLR 456 (481)
T ss_pred HHHHHHHHhccCCcEEEEe
Confidence 9999999998888775554
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.06 E-value=4e-10 Score=93.77 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=51.2
Q ss_pred ccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 63 LSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 63 ~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
+..+||+|||||||.++|++|+|++.|++|+..|++.|.+. ....++.|++..+.-.-++..
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~---------------~~~~~~~y~~~~~~~~~~~~~ 322 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ---------------PEKLNTAYWRKTRKLRLKLFG 322 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc---------------ccchHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999762 245688999987665544433
No 51
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.00 E-value=2.3e-09 Score=92.23 Aligned_cols=87 Identities=13% Similarity=-0.020 Sum_probs=70.1
Q ss_pred CccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 62 NLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 141 (177)
Q Consensus 62 ~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 141 (177)
+|..||++|||||||.++|++|+|.+.||.++..+|+.+.+.+.. ..+......|+.|++..+......++.+
T Consensus 305 ~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~-------g~~~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 305 RRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEN-------GTRMVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred ceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhc-------CCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999987642 1100124578999998888888888888
Q ss_pred HHHHHHHhhcchHH
Q 035639 142 YFSGWLQIGGTLLG 155 (177)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (177)
..+.++|...++..
T Consensus 378 ~~l~~~~~~~~~~~ 391 (450)
T PLN00093 378 DILQKVFYRSNPAR 391 (450)
T ss_pred HHHHHHHcCCcHHH
Confidence 88888776644433
No 52
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.96 E-value=5e-09 Score=88.75 Aligned_cols=83 Identities=16% Similarity=0.056 Sum_probs=68.1
Q ss_pred CccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 62 NLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 141 (177)
Q Consensus 62 ~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 141 (177)
+|..+|++|||||||.++|++|+|.+.||.++..+|+.+.+.+.. ..+......|+.|++.-+......++.+
T Consensus 266 ~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~-------~~~~~~~~~l~~Y~~~~~~~~~~~~~~~ 338 (398)
T TIGR02028 266 RRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL-------GGAVTEEGDLAGYLRRWDKEYRPTYRVL 338 (398)
T ss_pred cEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc-------CCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999987653 1100134679999998877778888888
Q ss_pred HHHHHHHhhc
Q 035639 142 YFSGWLQIGG 151 (177)
Q Consensus 142 ~~~~~~~~~~ 151 (177)
..+.+++...
T Consensus 339 ~~~~~~~~~~ 348 (398)
T TIGR02028 339 DLLQRVFYRS 348 (398)
T ss_pred HHHHHHHcCC
Confidence 8888877653
No 53
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.96 E-value=3.4e-09 Score=88.85 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=52.3
Q ss_pred ccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 035639 63 LSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTG 136 (177)
Q Consensus 63 ~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~ 136 (177)
+..+||++||||||.++|.+|+|++.|+++|..||+.|.+.+.. ....+++.|++.-+++..+
T Consensus 259 ~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 259 FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ-----------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHhchHHHHH
Confidence 47899999999999999999999999999999999999987642 3457788887654444444
No 54
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.68 E-value=6e-08 Score=81.51 Aligned_cols=64 Identities=19% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 140 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~ 140 (177)
.++|+++|||||.++|.+|+|++.+++||..|++.+.. . .. .+..++..|...|+.+.......
T Consensus 250 ~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~--~--------~~--~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 250 VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL--S--------SE--QLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred CCceeeeecccccccccccccHHHHHHHHHHHHhccCc--C--------cc--chhhhhhHHHHHHHHHhHHHHHH
Confidence 45599999999999999999999999999999998851 1 12 45567788888877776644443
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.35 E-value=6.2e-06 Score=69.02 Aligned_cols=133 Identities=18% Similarity=0.079 Sum_probs=101.7
Q ss_pred HHHHHH-HHHHHhccCChHHHHHHhh-CCCCCcccccccccCCCcccccCccCCcEEEeccCCCcCCCCcchhhhhHHHH
Q 035639 15 PELIQK-VLEKYAKVLPPFFLDIVQR-SDVSTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPELGQGGCQALED 92 (177)
Q Consensus 15 ~~~~~~-~~~~~~~~~~p~~~~~i~~-~~~~~~~~~~l~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~Al~D 92 (177)
..++.. +++.+...-++.+++.+.. .+.+.+...+-..+++- ...+.+++|+|||-.--||.+|-|+..|+.|
T Consensus 278 ~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~-----~~~~~G~illGDAfNMRHPltggGMtV~l~D 352 (509)
T KOG1298|consen 278 NGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPAT-----LNDKKGVILLGDAFNMRHPLTGGGMTVALSD 352 (509)
T ss_pred chhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCC-----cCCCCceEEEcccccccCCccCCceEeehhH
Confidence 445667 8888886778888887765 44445544444444332 3467889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHH
Q 035639 93 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIG-GTLLGGLLF 159 (177)
Q Consensus 93 A~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~-~~~~~~~~~ 159 (177)
+..|-+.|.....- .+.+.+.+.++.|-.+|++....+-..+....++|.. .+-..+-++
T Consensus 353 i~lLr~ll~pl~dL-------~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr 413 (509)
T KOG1298|consen 353 IVLLRRLLKPLPDL-------SDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMR 413 (509)
T ss_pred HHHHHHHhcccccc-------ccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 99999999874321 1123778899999999999999999999999999987 666665555
No 56
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.28 E-value=7.4e-06 Score=70.12 Aligned_cols=80 Identities=13% Similarity=-0.061 Sum_probs=63.6
Q ss_pred CccCCcEEEeccCCCcCCC--CcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035639 62 NLSKGNVTVAGDAMHPMTP--ELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 139 (177)
Q Consensus 62 ~~~~grv~LiGDAAH~~~P--~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~ 139 (177)
+.+.++++++||||-..+| +.|+|.+.||..+...|+.+.+++.. .+ .....|..|++.-+..+-+-++
T Consensus 291 ~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~-------~~--~s~~~l~~Y~~~l~~~~~~~l~ 361 (428)
T PRK10157 291 ELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS-------DD--FSKQKLAEYRQHLESGPLRDMR 361 (428)
T ss_pred ceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc-------CC--cchhhHHHHHHHHHHhHHHHHH
Confidence 4578999999999999988 59999999999999999999988763 11 3446799999887766656666
Q ss_pred HHHHHHHHHhh
Q 035639 140 GSYFSGWLQIG 150 (177)
Q Consensus 140 ~s~~~~~~~~~ 150 (177)
..+.+..++..
T Consensus 362 ~~~~~~~~~~~ 372 (428)
T PRK10157 362 MYQKLPAFLDN 372 (428)
T ss_pred HHhccHHHhcC
Confidence 66666666654
No 57
>PRK10015 oxidoreductase; Provisional
Probab=98.11 E-value=7.9e-06 Score=69.99 Aligned_cols=81 Identities=17% Similarity=0.010 Sum_probs=63.3
Q ss_pred CccCCcEEEeccCCCcCC--CCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHH-HHHHH
Q 035639 62 NLSKGNVTVAGDAMHPMT--PELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWR-VTGLV 138 (177)
Q Consensus 62 ~~~~grv~LiGDAAH~~~--P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r-~~~~~ 138 (177)
+.+.++++||||||...+ |+.|+|++.||..+...|+.+.++... .+ .....|+.|++.-+.. +.+-+
T Consensus 291 ~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~--------~d-~s~~~l~~Y~~~~~~~~~~~~l 361 (429)
T PRK10015 291 QLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKER--------AD-FSASSLAQYKRELEQSCVMRDM 361 (429)
T ss_pred ccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhc--------CC-CccccHHHHHHHHHHCHHHHHH
Confidence 567899999999999998 569999999999999999999988763 11 2345689999886644 66656
Q ss_pred HHHHHHHHHHhhc
Q 035639 139 IGSYFSGWLQIGG 151 (177)
Q Consensus 139 ~~s~~~~~~~~~~ 151 (177)
+..+.+..+++..
T Consensus 362 ~~~~~~~~~~~~~ 374 (429)
T PRK10015 362 QHFRKIPALMENP 374 (429)
T ss_pred HHHhChHhhhcCc
Confidence 6677777776654
No 58
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.91 E-value=8.2e-05 Score=62.99 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=59.5
Q ss_pred ccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 63 LSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSY 142 (177)
Q Consensus 63 ~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 142 (177)
+..++++||||||-..+|++|.|...||..|..+|+.|.+.... . ...|..|++..+.....-.....
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~-----------~-~~~l~~Y~~~~~~~~~~~~~~~~ 333 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG-----------G-EEALAEYERLLRKSLAREDLKSL 333 (396)
T ss_pred cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc-----------C-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999998653 2 56778898887766555554444
Q ss_pred HHHHHHh
Q 035639 143 FSGWLQI 149 (177)
Q Consensus 143 ~~~~~~~ 149 (177)
...+.+.
T Consensus 334 ~~~~~~~ 340 (396)
T COG0644 334 RLLKLLL 340 (396)
T ss_pred hhhhhHH
Confidence 4444333
No 59
>PLN02697 lycopene epsilon cyclase
Probab=97.38 E-value=0.0017 Score=57.22 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcC-CCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKG-HIAT-TGDNNVAQAIDGYVKERKWRVTGLVIGSY 142 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~-~~~~-~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~ 142 (177)
..+++++||||..++|.+|.|+..++..|..+|+.|++++..... .... .. ....+++.|++.-.....+-...-.
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~--~~~~~l~~~~~lw~~e~~r~~~~~~ 448 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSN--SSNISMQAWNTLWPQERKRQRAFFL 448 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCcccccccccc--chHHHHHHHHHhChHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999874210 0000 11 4567889898875554443333333
Q ss_pred HHHHHH
Q 035639 143 FSGWLQ 148 (177)
Q Consensus 143 ~~~~~~ 148 (177)
...+++
T Consensus 449 ~g~~~l 454 (529)
T PLN02697 449 FGLALI 454 (529)
T ss_pred HHHHHH
Confidence 333333
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.27 E-value=0.00051 Score=59.39 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=53.3
Q ss_pred CccCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 62 NLSKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 141 (177)
Q Consensus 62 ~~~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s 141 (177)
+...+++++|||||..+.|..+.|+.+++..+..|+..|... . ..+.+++.|++........+...-
T Consensus 312 ~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----------~--~~~~~~~~Yn~~~~~~~~~~~~fi 378 (454)
T PF04820_consen 312 QFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD-----------D--FSPAALDRYNRRMRREYERIRDFI 378 (454)
T ss_dssp SSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----------T--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC-----------C--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999888888888752 1 226789999999888877766555
Q ss_pred HHHH
Q 035639 142 YFSG 145 (177)
Q Consensus 142 ~~~~ 145 (177)
....
T Consensus 379 ~~hY 382 (454)
T PF04820_consen 379 SLHY 382 (454)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 61
>PLN02463 lycopene beta cyclase
Probab=96.42 E-value=0.012 Score=50.99 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=40.3
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+||+++||||-.++|.+|.|..-++..|..+|+.+.+++..
T Consensus 292 ~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 292 IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999998764
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.15 E-value=0.27 Score=41.34 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=36.1
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~ 102 (177)
..++|+.+|+|+-.++|.+|.++..+++.|..+|+.|..
T Consensus 252 ~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 252 FGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred cCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999999999999986
No 63
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=71.15 E-value=7.5 Score=25.34 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=27.9
Q ss_pred EeccCCCcCCCCcchhhhhHHHHHH-HHHHHHHH
Q 035639 70 VAGDAMHPMTPELGQGGCQALEDAV-VLGRHIGN 102 (177)
Q Consensus 70 LiGDAAH~~~P~~GqG~n~Al~DA~-~La~~L~~ 102 (177)
.||-|-+.|+|..=+.+..||+||. .|......
T Consensus 18 mvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 18 MVGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999 66666654
No 64
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=49.94 E-value=27 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=30.5
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
...+|..+||++....+....-+..|+..|..+|..|...+.+
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 3578999999996543222222456899999999988876654
No 65
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=39.89 E-value=55 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLL 104 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~ 104 (177)
..+|..+||+++... =+..|+.++..+|..|.+.+
T Consensus 315 ~~~vyaiGD~~~~~~-----~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 315 REGVFAAGDVVTGPS-----KIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCEEEEcccccCcc-----hHHHHHHHHHHHHHHHHHHH
Confidence 478999999987421 25688999999998887654
No 66
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=38.89 E-value=1.5e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 035639 89 ALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSGWLQIGGTLLGGLL 158 (177)
Q Consensus 89 Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~ 158 (177)
-=+.|..++..|.+ .+.++|..|.+.++.+-..-+..+. .-.-.+..|..+++
T Consensus 104 k~~~Akama~~L~~---------------af~~Af~~~kr~k~~~~~~~l~~~~--s~~~~p~~p~Rk~l 156 (182)
T PF14719_consen 104 KEEKAKAMARALYQ---------------AFRSAFQEFKRDKRSRQNARLSLGN--SVYSNPTMPRRKLL 156 (182)
T ss_pred CHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhchhc--cccCCCCChhhhHh
Confidence 34566667776666 5678899998888884332222111 11113455666666
No 67
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=38.76 E-value=58 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.7
Q ss_pred cCCcEEEeccCCCcCC----CCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 64 SKGNVTVAGDAMHPMT----PELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~----P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+.|+.+||+|.... |-.+| .|.+-+..+++.|...+.+
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ---~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQ---AAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhH---HHHHHHHHHHHHHHHHhcC
Confidence 4567999999998776 56666 6788888999988887665
No 68
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=38.36 E-value=61 Score=27.59 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+|.-+||++....+-...-+..|++.+..+|+.|...+.+
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 468999999997532111122456889999999988877654
No 69
>PRK07233 hypothetical protein; Provisional
Probab=37.83 E-value=48 Score=27.72 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=27.9
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLL 104 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~ 104 (177)
.+++.++||. .....|.|+..|++.+...|+.|.+.+
T Consensus 395 ~~~l~~aG~~---~~~~~~~~~~~Ai~sG~~aA~~i~~~~ 431 (434)
T PRK07233 395 IEGLYLAGMS---QIYPEDRSINGSVRAGRRVAREILEDR 431 (434)
T ss_pred cCCEEEeCCc---ccCCccCchhHHHHHHHHHHHHHhhhh
Confidence 4799999993 222345678999999999998887643
No 70
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=37.07 E-value=35 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=24.9
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~ 102 (177)
...+|..+||+++... .-+..|+.++...|..+..
T Consensus 264 ~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGY----RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCCEEEeecccCcch----hhhhhhhhhHHHHHHHHHh
Confidence 3568999999997422 2356788888877777654
No 71
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=35.08 E-value=21 Score=30.43 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=17.1
Q ss_pred CCcEEEecc-CCCcCCCCcchhhh
Q 035639 65 KGNVTVAGD-AMHPMTPELGQGGC 87 (177)
Q Consensus 65 ~grv~LiGD-AAH~~~P~~GqG~n 87 (177)
+|+|+| || .+|.++++..|=.=
T Consensus 222 NGgIVl-GDKsnH~a~~H~~Ql~Y 244 (379)
T PF04922_consen 222 NGGIVL-GDKSNHVATLHLPQLFY 244 (379)
T ss_pred cCeEEE-CccccCCccccHHHHHH
Confidence 477764 99 89999999988433
No 72
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=33.65 E-value=61 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=24.0
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHI 100 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L 100 (177)
.|+.|+||..|.-.+ .|++-|+..+..-|+.|
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 599999998876655 47888888887777655
No 73
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=33.39 E-value=68 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNL 103 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~ 103 (177)
.+++.++||. +.|.|++-||..+...|+.|.+.
T Consensus 428 ~~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 428 YPNIYLAGAS------YYGVGIGACIGNGKNTANEIIAT 460 (463)
T ss_pred CCCeEEeccc------cccccHHHHHHHHHHHHHHHHHH
Confidence 3799999999 45668999999999999888764
No 74
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=32.00 E-value=69 Score=27.26 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=26.9
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNL 103 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~ 103 (177)
+++.++||.. .|-|++-+|..+..+|+.|...
T Consensus 428 ~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~ 459 (462)
T TIGR00562 428 PGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTF 459 (462)
T ss_pred CCEEEecccc------CCCcHHHHHHHHHHHHHHHHHh
Confidence 5899999994 3669999999999999888764
No 75
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=29.59 E-value=73 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=26.9
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~ 102 (177)
.++.|+|+.+|+ |.|...++..+...|+.|..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 589999999864 67888899999998888764
No 76
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=29.42 E-value=75 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.7
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~ 102 (177)
.++.|+|+++|+ |.|...++..+...|+.+..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFP-----GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 589999999863 78888899999988888764
No 77
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=28.14 E-value=40 Score=28.69 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=14.9
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALE 91 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~ 91 (177)
...+|+|+||+| |+|++|.
T Consensus 193 G~~nI~LmGDSA---------GGnL~Ls 211 (374)
T PF10340_consen 193 GNKNIILMGDSA---------GGNLALS 211 (374)
T ss_pred CCCeEEEEecCc---------cHHHHHH
Confidence 356899999996 6777764
No 78
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=28.02 E-value=61 Score=21.41 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNL 103 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~ 103 (177)
..+|.+-|.++|+..|..| .| |+.-+..+...|...
T Consensus 8 ~~~i~~~G~~~H~s~~~~g--~n-ai~~~~~~l~~l~~~ 43 (111)
T PF07687_consen 8 WFRITITGKSGHSSRPEKG--VN-AIEAAARFLNALEEL 43 (111)
T ss_dssp EEEEEEESBSEETTSGGGS--BC-HHHHHHHHHHHHHHT
T ss_pred EEEEEEEeeccCCCCccCc--cC-HHHHHHHHHHHHHHh
Confidence 4578999999999977555 44 555555555555443
No 79
>PRK13984 putative oxidoreductase; Provisional
Probab=27.10 E-value=1.1e+02 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=27.7
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHh
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLI 105 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~ 105 (177)
..+|+.+||+++.. .+..|+.++...|..|.+.+.
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 46899999998643 367799999999998887653
No 80
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=26.26 E-value=1.2e+02 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+|+.+||+++.. .-+..|+.++...|..|...+.+
T Consensus 430 ~~gVfa~GD~~~g~-----~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 430 NPKVFAAGDMRRGQ-----SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEEccccCCCc-----hhHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999998731 13567999999999988887653
No 81
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=26.24 E-value=68 Score=26.97 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=29.6
Q ss_pred cCCcEEEeccCCCcCCCCcch-----hhhhHHHHHHHHHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQ-----GGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~Gq-----G~n~Al~DA~~La~~L~~ 102 (177)
+..+|.-+||+|....| .|. -.+.|.+.+..+|..|..
T Consensus 266 s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 266 CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 35789999999977666 553 237899999999998864
No 82
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=25.17 E-value=1.4e+02 Score=25.63 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+|..+||++.. ..-+..|+.++...|..|...+.+
T Consensus 417 ~~~VfA~GD~~~~-----~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 417 LPGVFAGGDIVTG-----AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEEeCCcCCC-----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999842 124668999999999998876653
No 83
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.97 E-value=78 Score=26.80 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=28.3
Q ss_pred cCCcEEEeccCCCcCCCCcchh-----hhhHHHHHHHHHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQG-----GCQALEDAVVLGRHIGN 102 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG-----~n~Al~DA~~La~~L~~ 102 (177)
...+|..+||++....+..|+. +..|...+..+|+.|..
T Consensus 260 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 260 SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 3478999999998766554432 35678888888888754
No 84
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=24.85 E-value=2.2e+02 Score=19.06 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=37.4
Q ss_pred eccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035639 71 AGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYFSG 145 (177)
Q Consensus 71 iGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R~~r~~~~~~~s~~~~ 145 (177)
++++++.+.-.-=.|.|++..-|--+ +.++.++. ++-.+.+.|+..-...+.++......+.
T Consensus 18 L~s~~~~~~y~plK~gnMaysraNsi-n~~r~Al~------------dLv~~Ve~fq~v~~~DA~RlkkmG~a~~ 79 (90)
T PF11328_consen 18 LKSKASGVEYLPLKNGNMAYSRANSI-NQLRTALI------------DLVDVVENFQQVVKKDASRLKKMGKAFT 79 (90)
T ss_pred HHcccCCcccccccCCCeehhhhhhH-HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677773333334556666655522 23333322 5667889999998888888876654443
No 85
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=24.56 E-value=81 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=21.9
Q ss_pred cCCcEEEeccCCCcCCCCcchhhhhHHHHHH
Q 035639 64 SKGNVTVAGDAMHPMTPELGQGGCQALEDAV 94 (177)
Q Consensus 64 ~~grv~LiGDAAH~~~P~~GqG~n~Al~DA~ 94 (177)
...|++|.||+.--++-..| |-..+|.|.+
T Consensus 5 ~rp~i~LFGdSItq~sF~~g-GwGA~Lad~y 34 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDG-GWGAALADLY 34 (245)
T ss_pred ccccEEEecchhhhhcccCC-chhHHHHHHH
Confidence 46799999999988887655 5555565543
No 86
>PLN02576 protoporphyrinogen oxidase
Probab=23.42 E-value=1.3e+02 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.1
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLL 104 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~ 104 (177)
+++.++||... |-|.+-||+.+..+|+.|....
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYL 487 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHH
Confidence 69999999975 5588999999999999987653
No 87
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=23.13 E-value=90 Score=26.15 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=16.3
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLG 97 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La 97 (177)
.+||+|+||+| |+|.|-.=|..++
T Consensus 165 ~~rv~l~GDSa---------GGNia~~va~r~~ 188 (336)
T KOG1515|consen 165 PSRVFLAGDSA---------GGNIAHVVAQRAA 188 (336)
T ss_pred cccEEEEccCc---------cHHHHHHHHHHHh
Confidence 46899999996 6676654444333
No 88
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=22.90 E-value=8.8 Score=33.21 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=39.5
Q ss_pred EEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHH
Q 035639 68 VTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKER 130 (177)
Q Consensus 68 v~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~~~~~~~~~~~~~~~~~l~~Ye~~R 130 (177)
+.+-|+|.|-+.|.++-+.+-..+++..|+|..+. ...+.|..|+.+|
T Consensus 247 ~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~---------------~~a~~L~~lp~e~ 294 (481)
T KOG3855|consen 247 AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP---------------ENASILKSLPEER 294 (481)
T ss_pred ccccchhHHhcCCCCceeecccccccccceeecCH---------------HHHHHHhcCCchh
Confidence 77789999999999999999999999999988875 3445566666665
No 89
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=22.74 E-value=1.3e+02 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.3
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIG 101 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~ 101 (177)
+++.++||..+ |-|+..||+.+...|+.+.
T Consensus 420 ~~l~~aG~~~~------g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 420 PGLYVAGASFE------GVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred CCEEEECcccC------CccHHHHHHHHHHHHHHHH
Confidence 58999999843 3478888888888887764
No 90
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.21 E-value=72 Score=27.27 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=20.9
Q ss_pred EeccCCCcCCCC-cchhhhhHHHHHHHH
Q 035639 70 VAGDAMHPMTPE-LGQGGCQALEDAVVL 96 (177)
Q Consensus 70 LiGDAAH~~~P~-~GqG~n~Al~DA~~L 96 (177)
|-|||.|...|. -|.|+..+|+-|..=
T Consensus 286 ls~Da~HiT~P~~dG~Ga~~am~raL~~ 313 (440)
T KOG1394|consen 286 LSSDAYHITSPDPDGAGAVLAMERALKD 313 (440)
T ss_pred ccccccccCCCCCCcchHHHHHHHHHHH
Confidence 569999998884 588998888765543
No 91
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=20.96 E-value=1.5e+02 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.5
Q ss_pred CcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHH
Q 035639 66 GNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNL 103 (177)
Q Consensus 66 grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~ 103 (177)
.++.|+|+.+|+ |.|...++..+...|+.|..-
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 459 DNLYLVGAGTHP-----GAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCEEEeCCCCCC-----CCCHHHHHHHHHHHHHHHHhh
Confidence 589999999754 678888989999999888763
No 92
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=20.87 E-value=1.9e+02 Score=25.02 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLL 104 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~ 104 (177)
..+|+.+||++.... -+..|+.++...|..|...+
T Consensus 431 ~~gVfa~GD~~~~~~-----~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 431 NPKIFAGGDAVRGAD-----LVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCEEEECCcCCCcc-----HHHHHHHHHHHHHHHHHHHh
Confidence 367999999986421 24679999999888877643
No 93
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=20.80 E-value=1.2e+02 Score=25.03 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=22.9
Q ss_pred cEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHH
Q 035639 67 NVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGN 102 (177)
Q Consensus 67 rv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~ 102 (177)
+|.+.|.++|+..|..|. .||.-+..+...|..
T Consensus 174 ~i~~~G~~~Has~p~~g~---nAi~~~~~~i~~l~~ 206 (363)
T TIGR01891 174 EVTIHGKGAHAARPHLGR---DALDAAAQLVVALQQ 206 (363)
T ss_pred EEEEEeecccccCccccc---CHHHHHHHHHHHHHH
Confidence 588999999998897665 455555555555543
No 94
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=20.60 E-value=1.4e+02 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=22.8
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHH
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIG 101 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~ 101 (177)
.+++.++||..+.-.| .-+.-|++.+..+|+.|.
T Consensus 385 ~~~l~~aGd~~~~~~~---~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 385 WPNLFLAGDWTATGWP---ATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCEEEecccccCCCc---chHHHHHHHHHHHHHHHh
Confidence 4789999999876433 245566666666666553
No 95
>COG5654 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=51 Score=24.65 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.1
Q ss_pred EEEeccCCCcCCCCcchhhh
Q 035639 68 VTVAGDAMHPMTPELGQGGC 87 (177)
Q Consensus 68 v~LiGDAAH~~~P~~GqG~n 87 (177)
..=+||..|+.+|+.|.|+.
T Consensus 13 ~yR~~~pr~a~~~~sG~GA~ 32 (163)
T COG5654 13 CYRIGDPRWAYSPFSGEGAA 32 (163)
T ss_pred EEEecCccccCCCcCCCcce
Confidence 44489999999999999975
No 96
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.18 E-value=1.8e+02 Score=25.89 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=29.2
Q ss_pred CCcEEEeccCCCcCCCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 035639 65 KGNVTVAGDAMHPMTPELGQGGCQALEDAVVLGRHIGNLLIK 106 (177)
Q Consensus 65 ~grv~LiGDAAH~~~P~~GqG~n~Al~DA~~La~~L~~~~~~ 106 (177)
..+|+.+||++.. | .-+..|+.++...|..|...+.+
T Consensus 409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999853 2 24568999999999999888764
Done!