BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035640
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 176/474 (37%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 270
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG G+ E S S + L N + D Q ++
Sbjct: 271 GYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 330
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 331 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 376
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 377 VAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 431
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + D+ P P +Y P + F +
Sbjct: 432 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPE---QDTFYKQ 486
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 487 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 541
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I S+ V G R ++ S+ L Y A TH ++ +QR + L
Sbjct: 542 TRPKITRTSTQSV-KVGGRITISTDSSI------SKASLIRYGTA--THTVNTDQRRIPL 592
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQI 595
+L G + PS VA PG GVPSVA +++
Sbjct: 593 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 178/481 (37%), Gaps = 74/481 (15%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 270
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG +FS G+ V+ P K T+ L
Sbjct: 271 GYQSSATMSDGRVFTIGG--SFSGGVFEKNGE-----VYSPSSKTWTS-----------L 312
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPL 310
+ P L+ D S+N + L K V + P T + Y + + V
Sbjct: 313 PNAKVNPM--LTADKQGLYRSDNHAWLFGWKKGSVFQAGP-STAMNWYYTSGSGDVKSAG 369
Query: 311 KLRANNATA-------------TKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDIT 357
K ++N A K K+L GG+ D T L + G T
Sbjct: 370 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----T 424
Query: 358 KPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS 417
PN V+ + R V+LP + G + G + D+ P P +Y P
Sbjct: 425 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPE--- 479
Query: 418 RQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLD 477
+ F + +I R+YHS S+LLPDG V G G + + F+P YL
Sbjct: 480 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLY 534
Query: 478 PSLAWL--RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISM 535
S L RP I +S + + G R ++ S + L Y A TH ++
Sbjct: 535 NSNGNLATRPKI-TRTSTQSVKVGGRITISTDS------SISKASLIRYGTA--THTVNT 585
Query: 536 NQRLLILSLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQ 594
+QR + L+L G + PS VA PG GVPSVA ++
Sbjct: 586 DQRRIPLTLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIR 636
Query: 595 I 595
+
Sbjct: 637 V 637
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 177/481 (36%), Gaps = 74/481 (15%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 237 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 292
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG +FS G+ V+ P K T+ L
Sbjct: 293 GYQSSATMSDGRVFTIGG--SFSGGVFEKNGE-----VYSPSSKTWTS-----------L 334
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPL 310
+ P L+ D S+N + L K V + P T + Y + + V
Sbjct: 335 PNAKVNPM--LTADKQGLYKSDNHAWLFGWKKGSVFQAGP-STAMNWYYTSGSGDVKSAG 391
Query: 311 KLRANNATA-------------TKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDIT 357
K ++N A K K+L GG+ D T L + G T
Sbjct: 392 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP-DYTDSDATTNAHIITLGEPG----T 446
Query: 358 KPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS 417
PN V+ + R V+LP + G + G + D+ P P +Y P
Sbjct: 447 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGII-FEDST-PVFTPEIYVPE--- 501
Query: 418 RQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLD 477
+ F + +I R YHS S+LLPDG V G G + + F+P YL
Sbjct: 502 QDTFYKQNPNSIVRAYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLY 556
Query: 478 PSLAWL--RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISM 535
S L RP I +S + + G R ++ S + L Y A TH ++
Sbjct: 557 DSNGNLATRPKI-TRTSTQSVKVGGRITISTDS------SISKASLIRYGTA--THTVNT 607
Query: 536 NQRLLILSLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQ 594
+QR + L+L G + PS VA PG GVPSVA ++
Sbjct: 608 DQRRIPLTLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIR 658
Query: 595 I 595
+
Sbjct: 659 V 659
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 173/474 (36%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 270
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG + E S S + L N + D Q ++
Sbjct: 271 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 330
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 331 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 376
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 377 VAPDAMSGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 431
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + P P +Y P + F +
Sbjct: 432 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIYVPE---QDTFYKQ 486
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 487 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 541
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I S+ V G R ++ S + L Y A TH ++ +QR + L
Sbjct: 542 TRPKITRTSTQSV-KVGGRITISTDS------SISKASLIRYGTA--THTVNTDQRRIPL 592
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQI 595
+L G + PS VA PG GVPSVA +++
Sbjct: 593 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 175/474 (36%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 270
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG + E S S + L N + D Q ++
Sbjct: 271 GYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 330
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 331 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 376
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 377 VAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 431
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + D+ P P +Y P + F +
Sbjct: 432 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPE---QDTFYKQ 486
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 487 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 541
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I S+ V G R ++ S+ L Y A TH ++ +QR + L
Sbjct: 542 TRPKITRTSTQSV-KVGGRITISTDSSI------SKASLIRYGTA--THTVNTDQRRIPL 592
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQI 595
+L G + PS VA PG GVPSVA +++
Sbjct: 593 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 173/474 (36%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 270
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG + E S S + L N + D Q ++
Sbjct: 271 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 330
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 331 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 376
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 377 VAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 431
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + P P +Y P + F +
Sbjct: 432 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIYVPE---QDTFYKQ 486
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 487 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 541
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I S+ V G R ++ S + L Y A TH ++ +QR + L
Sbjct: 542 TRPKITRTSTQSV-KVGGRITISTDS------SISKASLIRYGTA--THTVNTDQRRIPL 592
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQI 595
+L G + PS VA PG GVPSVA +++
Sbjct: 593 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 107/280 (38%), Gaps = 36/280 (12%)
Query: 319 ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMV 378
A K K+L GG+ D T L + G T PN V+ + R V
Sbjct: 408 AVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHTSV 462
Query: 379 ILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSV 438
+LP + G + G + P P +Y P + F + +I R+YHS S+
Sbjct: 463 VLPDGSTFITGGQRRGIP--FEDSTPVFTPEIYVPE---QDTFYKQNPNSIVRVYHSISL 517
Query: 439 LLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL--RPSIVVDSSDKVI 496
LLPDG V G G + + F+P YL S L RP I +S + +
Sbjct: 518 LLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRTSTQSV 571
Query: 497 HYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATE 556
G R ++ S + L Y A TH ++ +QR + L+L
Sbjct: 572 KVGGRITISTDS------SISKASLIRYGTA--THTVNTDQRRIPLTLTN---------N 614
Query: 557 GLHDIIALAPSSGAVAPPGX-XXXXXXXKGVPSVAMWVQI 595
G + PS VA PG GVPSVA +++
Sbjct: 615 GGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 654
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 460 AKYPTELR--VEKFSPPYLDPS--LAWLRPSIVVDSSDKVIHYGQRFSV 504
A+ P ELR ++KFSPPY+ + LA + +++DS ++ I G + +
Sbjct: 127 AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLII 175
>pdb|3PQH|A Chain A, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
pdb|3PQH|B Chain B, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
Length = 127
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 229 FFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVV 286
F P + T+ + +D E +I NN + P+GN+ ++ N + + +D N +V
Sbjct: 3 FIPKIATATDSSEEVD-SEKVIISNNKQTYASFDPNGNISVY-NTQGMKIDMTPNSIV 58
>pdb|3LAT|A Chain A, Crystal Structure Of Staphylococcus Peptidoglycan
Hydrolase Amie
pdb|3LAT|B Chain B, Crystal Structure Of Staphylococcus Peptidoglycan
Hydrolase Amie
Length = 213
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 232 LLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFI 269
++ DT ND IDG+ F+ N FV+ DGN I
Sbjct: 58 VVHDTANDNSTIDGEIAFMKRNYTNAFVHAFVDGNRII 95
>pdb|3PQI|A Chain A, Crystal Structure Of The Bacteriophage Phi92
Membrane-Piercing Protein Gp138
Length = 247
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 229 FFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVV 286
F P + T+ + +D E +I NN + P+GN+ ++ N + + +D N +V
Sbjct: 123 FIPKIATATDSSEEVD-SEKVIISNNKQTYASFDPNGNISVY-NTQGMKIDMTPNSIV 178
>pdb|1VHQ|A Chain A, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
pdb|1VHQ|B Chain B, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
Length = 232
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 81 KINKVLMYDATVWRT--SKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKL 138
+I++ ++ + R+ + P K V +H+TGE +VL E + +T ++
Sbjct: 23 EIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVL--IEAARITRGEI 80
Query: 139 QTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALA 187
+ + L A L+ GGFG N + S C ALA
Sbjct: 81 RPLAQADAAELDA---LIVPGGFGAAKNLSNFASLGSECTVDRELKALA 126
>pdb|1OY1|A Chain A, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|B Chain B, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|C Chain C, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|D Chain D, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
Length = 228
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 81 KINKVLMYDATVWRT--SKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKL 138
+I++ ++ + R+ + P K V +H+TGE +VL E + +T ++
Sbjct: 21 EIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVL--IEAARITRGEI 78
Query: 139 QTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALA 187
+ + L A L+ GGFG N + S C ALA
Sbjct: 79 RPLAQADAAELDA---LIVPGGFGAAKNLSNFASLGSECTVDRELKALA 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,019,579
Number of Sequences: 62578
Number of extensions: 855968
Number of successful extensions: 2350
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2314
Number of HSP's gapped (non-prelim): 33
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)