BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035640
(596 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/474 (24%), Positives = 182/474 (38%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 256 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 311
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG + E S S + L N + D Q ++
Sbjct: 312 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 371
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 372 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 417
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 418 VAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 472
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + D+ P P +Y P + F +
Sbjct: 473 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPE---QDTFYKQ 527
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 528 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 582
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I S+ V G R ++ S + L Y A TH ++ +QR + L
Sbjct: 583 TRPKITRTSTQSV-KVGGRITISTDS------SISKASLIRYGTA--THTVNTDQRRIPL 633
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGYYLLYVVYK-GVPSVAMWVQI 595
+L G + PS VA PGY++L+V+ GVPSVA +++
Sbjct: 634 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/474 (24%), Positives = 183/474 (38%), Gaps = 60/474 (12%)
Query: 131 SELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR 190
S+ T + D +C + +G +V TGG T Y S+ D W P + R
Sbjct: 256 SDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSD--SWIPGPD-MQVAR 311
Query: 191 WYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFL 250
Y + T+ DG +GG + E S S + L N + D Q ++
Sbjct: 312 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 371
Query: 251 IENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSV---- 306
+N+ + F + G++F +A T GS + ++
Sbjct: 372 SDNHAWLFGW--KKGSVF------------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 417
Query: 307 LLPLKLRANNAT--ATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWK 364
+ P + N A K K+L GG+ D T L + G T PN V+
Sbjct: 418 VAPDAMCGNAVMYDAVKGKILTFGGSP-DYQDSDATTNAHIITLGEPG----TSPNTVFA 472
Query: 365 KERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKEL 424
+ R V+LP + G + G + D+ P P +Y P + F +
Sbjct: 473 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPE---QDTFYKQ 527
Query: 425 AAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWL- 483
+I R+YHS S+LLPDG V G G + + F+P YL S L
Sbjct: 528 NPNSIVRVYHSISLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLA 582
Query: 484 -RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLIL 542
RP I +S + + G R ++ S+ L Y A TH ++ +QR + L
Sbjct: 583 TRPKI-TRTSTQSVKVGGRITISTDSSITKA------SLIRYGTA--THTVNTDQRRIPL 633
Query: 543 SLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGYYLLYVVYK-GVPSVAMWVQI 595
+L G + PS VA PGY++L+V+ GVPSVA +++
Sbjct: 634 TLTN---------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|Q9HCJ3|RAVR2_HUMAN Ribonucleoprotein PTB-binding 2 OS=Homo sapiens GN=RAVER2 PE=1 SV=2
Length = 691
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 374 MGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMY 433
MG + P + I G + + ++ P Q F LAAG++ +
Sbjct: 485 MGMLPFFPNQHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGH 544
Query: 434 HSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWLRPSIVVDS 491
H P GT + +G+ + N L + P E+R+ K PYL+ LA + PS+ + S
Sbjct: 545 HKQQQSQPKGTEISSGAASKNQTSLLGEPPKEIRLSK--NPYLN--LASVLPSVCLSS 598
>sp|Q4JSC5|RSMG_CORJK Ribosomal RNA small subunit methyltransferase G OS=Corynebacterium
jeikeium (strain K411) GN=rsmG PE=3 SV=1
Length = 222
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 23 FSLPFFDFGDAPKAIQKVETGNDANDDGNKIAET-GYNGKWELVSENSGVSAMHAILLPK 81
+SLP G A KA++ + D +IA+ G +G ELV E+ H I +P+
Sbjct: 161 WSLPLVKVGGAMKALKGGSVAEELERDAKEIAKAGGGDGTIELVGESKVAEPTHVITIPR 220
Query: 82 IN 83
I
Sbjct: 221 IR 222
>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
Length = 943
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 46/252 (18%)
Query: 188 DPRWYSTQVTLPDG-GFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDG- 245
+PRW T TLP+G GFIV GG ++ I N S + + ++ G
Sbjct: 15 EPRWGHTGTTLPNGSGFIVFGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAV 74
Query: 246 --QEMFLIENNLYPFVYLS--------PDGNLFIFSNNRSILLDPKANK----------- 284
Q ++ Y ++ D N+ ++NRS + K
Sbjct: 75 LYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFIWKQVTTKSIEGRAGHTAV 134
Query: 285 VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGG------AQWDSFYFS 338
V R+ ++ GG N+ + + +L L +N + + VCGG A +F +
Sbjct: 135 VYRQNLVVFGGHNNHKSKYYNSVLLFSLESN-----EWRQQVCGGVIPSARATHSTFQVN 189
Query: 339 ETKKQFFPA------LQDCGRIDITKPNAVWKKERM----PSPRVMGDMVILPTEDILLL 388
K F D +D+ +WKK P PR ++ +++
Sbjct: 190 NNKMFIFGGYDGKKYYNDIYYLDL--ETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIF 247
Query: 389 NGAKTGTSGWND 400
G + ++ ND
Sbjct: 248 GGCGSDSNFLND 259
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase 2 OS=Streptomyces
griseus GN=strB2 PE=3 SV=1
Length = 349
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 396 SGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLL--PDGTVLVAGSNTH 453
S W A P L +Y+P GPS +R ++L ++ +++VL D LV+ S
Sbjct: 147 SRWISAPKPRLAEGMYSPSGPSGERLRDLEP-----VFDAANVLRLGTDLLYLVSDSGNE 201
Query: 454 NGY-----ILDAKYPTELRVEKFSPPYLDPSLAWLRPSIVVDSSDKV 495
G L A Y +S ++D +L LRP +V+ + +V
Sbjct: 202 LGARWLQSALGAAYTVHPCRGLYSSTHIDSTLVPLRPGLVLVNPARV 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,194,742
Number of Sequences: 539616
Number of extensions: 10894051
Number of successful extensions: 22222
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 22190
Number of HSP's gapped (non-prelim): 55
length of query: 596
length of database: 191,569,459
effective HSP length: 123
effective length of query: 473
effective length of database: 125,196,691
effective search space: 59218034843
effective search space used: 59218034843
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)