Query 035640
Match_columns 596
No_of_seqs 327 out of 1830
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 1.3E-46 2.8E-51 374.0 23.6 237 74-329 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 1.9E-36 4.2E-41 338.5 28.4 269 81-439 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 4.5E-34 9.8E-39 319.5 25.8 249 151-476 283-548 (571)
4 PHA02713 hypothetical protein; 100.0 4.4E-32 9.6E-37 304.0 23.3 236 122-427 273-543 (557)
5 cd02851 Galactose_oxidase_C_te 100.0 8.9E-33 1.9E-37 238.0 12.5 99 479-596 1-101 (101)
6 PF09118 DUF1929: Domain of un 100.0 3E-32 6.5E-37 235.0 10.3 97 484-595 1-98 (98)
7 PHA02713 hypothetical protein; 100.0 1.2E-30 2.7E-35 292.4 25.3 255 154-476 259-535 (557)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.4E-28 3.1E-33 260.8 28.6 249 147-454 12-333 (346)
9 PHA02790 Kelch-like protein; P 100.0 9.8E-28 2.1E-32 265.0 25.8 218 126-475 251-471 (480)
10 PRK14131 N-acetylneuraminic ac 100.0 6.3E-27 1.4E-31 251.1 27.4 263 148-474 34-368 (376)
11 PHA02790 Kelch-like protein; P 99.9 2.9E-26 6.3E-31 253.3 24.1 206 82-424 271-477 (480)
12 TIGR03548 mutarot_permut cycli 99.9 7.4E-26 1.6E-30 237.9 24.9 251 149-455 10-316 (323)
13 PLN02153 epithiospecifier prot 99.9 3.5E-25 7.5E-30 234.6 29.5 280 129-454 5-326 (341)
14 PHA03098 kelch-like protein; P 99.9 1.4E-25 3E-30 251.4 26.4 245 122-476 265-513 (534)
15 TIGR03547 muta_rot_YjhT mutatr 99.9 3.1E-24 6.7E-29 227.6 26.3 249 76-392 13-331 (346)
16 PLN02153 epithiospecifier prot 99.9 1.3E-23 2.7E-28 222.6 28.2 284 57-414 4-339 (341)
17 PRK14131 N-acetylneuraminic ac 99.9 6.2E-24 1.3E-28 228.0 25.7 251 123-423 52-374 (376)
18 PLN02193 nitrile-specifier pro 99.9 2.9E-23 6.3E-28 228.9 31.2 274 124-454 140-455 (470)
19 PHA03098 kelch-like protein; P 99.9 6.7E-24 1.5E-28 237.8 26.3 254 55-431 269-525 (534)
20 TIGR03548 mutarot_permut cycli 99.9 1.7E-23 3.7E-28 220.0 26.4 268 70-392 3-313 (323)
21 PLN02193 nitrile-specifier pro 99.9 1.2E-22 2.7E-27 223.9 29.1 263 150-476 118-412 (470)
22 KOG4693 Uncharacterized conser 99.7 1.6E-15 3.4E-20 148.5 19.3 262 61-392 3-312 (392)
23 KOG4693 Uncharacterized conser 99.7 4.6E-15 1E-19 145.3 21.6 252 148-453 19-313 (392)
24 KOG0379 Kelch repeat-containin 99.3 7.7E-11 1.7E-15 130.5 22.2 244 143-446 61-334 (482)
25 KOG0379 Kelch repeat-containin 99.3 8E-11 1.7E-15 130.4 21.4 207 186-454 57-287 (482)
26 KOG1230 Protein containing rep 99.1 4E-09 8.7E-14 109.5 16.6 219 153-452 79-317 (521)
27 KOG4152 Host cell transcriptio 99.0 1.7E-08 3.7E-13 107.0 17.7 270 132-452 18-342 (830)
28 PF07250 Glyoxal_oxid_N: Glyox 99.0 1.1E-08 2.3E-13 102.6 14.6 135 275-452 48-190 (243)
29 COG3055 Uncharacterized protei 98.8 3.7E-07 8.1E-12 94.0 20.8 256 140-455 34-362 (381)
30 KOG1230 Protein containing rep 98.8 7.1E-08 1.5E-12 100.5 15.1 163 258-452 71-252 (521)
31 KOG4152 Host cell transcriptio 98.7 1.4E-07 3E-12 100.2 14.5 218 185-451 28-273 (830)
32 PF13964 Kelch_6: Kelch motif 98.7 2E-08 4.3E-13 75.9 5.8 50 371-431 1-50 (50)
33 COG3055 Uncharacterized protei 98.7 6.5E-07 1.4E-11 92.3 18.5 226 130-393 69-360 (381)
34 smart00612 Kelch Kelch domain. 98.4 3.2E-07 7E-12 67.4 4.8 45 384-439 1-45 (47)
35 PF01344 Kelch_1: Kelch motif; 98.4 3.5E-07 7.7E-12 67.8 3.5 47 371-428 1-47 (47)
36 PF13964 Kelch_6: Kelch motif 98.2 2.3E-06 5.1E-11 64.4 4.9 46 143-190 2-50 (50)
37 smart00612 Kelch Kelch domain. 98.0 1.1E-05 2.3E-10 59.1 5.1 43 154-198 1-45 (47)
38 PF13418 Kelch_4: Galactose ox 98.0 5.9E-06 1.3E-10 61.8 3.2 48 371-428 1-48 (49)
39 PF13415 Kelch_3: Galactose ox 97.9 1.8E-05 3.9E-10 59.4 5.2 48 382-438 1-48 (49)
40 PF07646 Kelch_2: Kelch motif; 97.9 2.5E-05 5.4E-10 58.6 5.2 49 371-428 1-49 (49)
41 PF01344 Kelch_1: Kelch motif; 97.5 4.2E-05 9E-10 56.5 1.6 43 143-187 2-47 (47)
42 PF13415 Kelch_3: Galactose ox 97.5 0.00023 4.9E-09 53.3 5.6 44 152-197 1-48 (49)
43 PF07646 Kelch_2: Kelch motif; 97.0 0.0012 2.6E-08 49.4 4.5 42 143-186 2-48 (49)
44 PLN02772 guanylate kinase 97.0 0.0022 4.7E-08 68.8 8.1 70 371-452 24-96 (398)
45 PF13418 Kelch_4: Galactose ox 96.8 0.0009 2E-08 49.9 2.5 42 144-187 4-48 (49)
46 PLN02772 guanylate kinase 96.1 0.02 4.2E-07 61.6 8.4 67 143-210 25-96 (398)
47 PRK11138 outer membrane biogen 95.6 4.2 9.2E-05 43.9 24.5 242 123-450 132-384 (394)
48 PF13854 Kelch_5: Kelch motif 95.0 0.051 1.1E-06 39.2 4.6 41 368-415 1-41 (42)
49 PRK11138 outer membrane biogen 94.6 5.5 0.00012 43.0 21.7 132 262-450 158-302 (394)
50 COG4257 Vgb Streptogramin lyas 94.5 6.6 0.00014 40.3 20.1 231 123-444 85-327 (353)
51 KOG0286 G-protein beta subunit 93.4 11 0.00023 39.0 25.3 244 123-452 79-336 (343)
52 PRK13684 Ycf48-like protein; P 93.4 12 0.00027 39.6 28.7 74 360-451 245-322 (334)
53 COG4257 Vgb Streptogramin lyas 92.7 13 0.00029 38.1 21.5 140 31-207 61-206 (353)
54 TIGR03866 PQQ_ABC_repeats PQQ- 92.2 14 0.00029 37.0 27.6 87 123-217 13-100 (300)
55 KOG2437 Muskelin [Signal trans 92.1 0.18 3.8E-06 54.9 4.6 155 264-451 272-456 (723)
56 KOG0310 Conserved WD40 repeat- 91.8 19 0.0004 39.5 19.2 244 121-453 48-301 (487)
57 cd00200 WD40 WD40 domain, foun 91.6 13 0.00029 35.7 26.6 63 147-217 57-120 (289)
58 PF10282 Lactonase: Lactonase, 91.1 23 0.0005 37.5 24.8 95 122-217 16-114 (345)
59 TIGR01640 F_box_assoc_1 F-box 91.1 7.1 0.00015 38.6 14.8 153 264-450 5-161 (230)
60 PF13854 Kelch_5: Kelch motif 91.0 0.24 5.3E-06 35.6 3.0 24 186-210 1-24 (42)
61 KOG0310 Conserved WD40 repeat- 90.7 14 0.00031 40.4 17.0 51 321-392 249-300 (487)
62 KOG0286 G-protein beta subunit 90.7 22 0.00048 36.7 17.4 159 261-477 105-273 (343)
63 TIGR01640 F_box_assoc_1 F-box 90.3 4.7 0.0001 39.9 12.7 142 122-283 71-230 (230)
64 PRK11028 6-phosphogluconolacto 88.8 32 0.0007 35.8 27.6 92 123-217 14-107 (330)
65 PLN00181 protein SPA1-RELATED; 88.8 50 0.0011 39.3 21.8 142 263-453 586-730 (793)
66 PF14870 PSII_BNR: Photosynthe 88.2 8.1 0.00017 40.5 12.9 128 50-210 124-253 (302)
67 PRK11028 6-phosphogluconolacto 87.8 37 0.00081 35.3 29.8 68 147-217 85-153 (330)
68 TIGR03866 PQQ_ABC_repeats PQQ- 87.2 34 0.00073 34.1 26.5 87 123-217 55-142 (300)
69 PF08450 SGL: SMP-30/Gluconola 87.0 19 0.00041 35.9 14.5 156 263-474 50-213 (246)
70 PF13360 PQQ_2: PQQ-like domai 86.9 23 0.0005 34.6 15.0 138 262-452 34-183 (238)
71 TIGR03300 assembly_YfgL outer 86.5 48 0.001 35.2 26.9 129 262-451 239-370 (377)
72 KOG0315 G-protein beta subunit 86.4 40 0.00088 34.2 21.7 218 119-416 59-290 (311)
73 COG5184 ATS1 Alpha-tubulin sup 85.8 61 0.0013 35.7 18.7 82 125-209 90-203 (476)
74 KOG2437 Muskelin [Signal trans 84.7 1.3 2.8E-05 48.5 4.8 134 51-210 230-395 (723)
75 PF07893 DUF1668: Protein of u 82.6 51 0.0011 35.1 16.0 61 72-162 67-127 (342)
76 KOG0315 G-protein beta subunit 82.0 63 0.0014 32.9 21.3 62 149-217 48-110 (311)
77 PF07893 DUF1668: Protein of u 79.1 27 0.0006 37.1 12.5 118 150-287 74-213 (342)
78 PTZ00421 coronin; Provisional 75.7 1.1E+02 0.0024 34.3 16.6 53 122-178 149-201 (493)
79 TIGR03300 assembly_YfgL outer 73.6 51 0.0011 35.0 13.0 107 261-423 62-171 (377)
80 cd00200 WD40 WD40 domain, foun 72.5 91 0.002 29.7 24.2 61 149-217 17-78 (289)
81 PF03089 RAG2: Recombination a 71.1 1.2E+02 0.0027 31.4 13.8 108 320-448 163-281 (337)
82 KOG0271 Notchless-like WD40 re 67.8 16 0.00034 39.0 7.0 57 380-454 124-180 (480)
83 PF13088 BNR_2: BNR repeat-lik 65.1 10 0.00022 38.4 5.1 56 149-205 215-275 (275)
84 KOG0278 Serine/threonine kinas 65.0 1.1E+02 0.0024 31.1 11.9 102 151-285 154-258 (334)
85 PF12768 Rax2: Cortical protei 64.1 53 0.0011 34.1 10.0 102 55-183 21-129 (281)
86 PF14870 PSII_BNR: Photosynthe 63.0 2E+02 0.0044 30.1 20.2 241 130-452 5-253 (302)
87 PRK04792 tolB translocation pr 62.5 1.6E+02 0.0035 32.5 14.3 90 122-216 287-376 (448)
88 PTZ00421 coronin; Provisional 62.4 2.7E+02 0.0058 31.3 16.9 22 265-286 138-161 (493)
89 cd02849 CGTase_C_term Cgtase ( 61.8 63 0.0014 26.8 8.3 76 484-592 2-78 (81)
90 KOG0279 G protein beta subunit 60.7 2.1E+02 0.0046 29.6 13.6 135 122-284 86-225 (315)
91 PRK13684 Ycf48-like protein; P 60.1 2.3E+02 0.005 29.9 17.0 78 127-209 200-279 (334)
92 PF10633 NPCBM_assoc: NPCBM-as 59.8 25 0.00055 28.6 5.6 73 497-582 2-74 (78)
93 PTZ00420 coronin; Provisional 59.5 1.6E+02 0.0034 33.9 13.6 50 122-177 149-199 (568)
94 PLN02919 haloacid dehalogenase 59.2 4.2E+02 0.0091 32.9 18.2 61 377-453 809-880 (1057)
95 PF10282 Lactonase: Lactonase, 59.1 2.4E+02 0.0052 29.7 22.0 59 349-425 267-332 (345)
96 KOG0271 Notchless-like WD40 re 58.1 39 0.00084 36.2 7.7 53 122-178 138-190 (480)
97 KOG2055 WD40 repeat protein [G 57.6 2.7E+02 0.0058 30.8 13.9 219 151-452 223-456 (514)
98 PF08450 SGL: SMP-30/Gluconola 56.0 1E+02 0.0022 30.6 10.4 79 350-451 23-105 (246)
99 KOG0303 Actin-binding protein 54.8 1.5E+02 0.0032 32.2 11.3 81 121-209 154-236 (472)
100 PLN00033 photosystem II stabil 52.0 3.5E+02 0.0076 29.5 28.9 70 363-451 318-390 (398)
101 KOG1036 Mitotic spindle checkp 49.4 2.7E+02 0.0059 29.1 12.0 89 115-217 71-160 (323)
102 PF13088 BNR_2: BNR repeat-lik 46.9 38 0.00081 34.2 5.7 80 357-447 190-275 (275)
103 PRK05137 tolB translocation pr 46.3 3.9E+02 0.0085 29.1 14.0 82 122-208 271-352 (435)
104 PF13540 RCC1_2: Regulator of 45.1 24 0.00052 23.3 2.6 17 75-91 10-26 (30)
105 KOG0647 mRNA export protein (c 45.0 3.3E+02 0.0073 28.5 11.8 51 120-174 93-145 (347)
106 KOG0278 Serine/threonine kinas 44.7 1.5E+02 0.0032 30.3 9.0 134 147-331 106-245 (334)
107 PF07433 DUF1513: Protein of u 44.4 4E+02 0.0087 28.0 13.6 99 262-390 13-118 (305)
108 PTZ00420 coronin; Provisional 44.1 3.1E+02 0.0068 31.5 12.9 26 381-415 224-249 (568)
109 PF07433 DUF1513: Protein of u 43.4 2.7E+02 0.0058 29.3 11.2 103 77-209 11-120 (305)
110 PF12768 Rax2: Cortical protei 43.0 1.4E+02 0.0031 30.9 9.2 85 353-451 20-110 (281)
111 COG2706 3-carboxymuconate cycl 42.7 4E+02 0.0087 28.4 12.3 96 116-217 210-318 (346)
112 PF00868 Transglut_N: Transglu 41.9 2.5E+02 0.0055 24.9 9.7 22 558-582 94-115 (118)
113 PRK03629 tolB translocation pr 41.8 4.5E+02 0.0098 28.7 13.5 84 122-211 312-395 (429)
114 COG1520 FOG: WD40-like repeat 40.8 4.7E+02 0.01 27.7 20.8 261 123-451 80-354 (370)
115 KOG0266 WD40 repeat-containing 40.0 5.5E+02 0.012 28.3 20.8 116 140-284 202-321 (456)
116 TIGR02608 delta_60_rpt delta-6 39.7 27 0.0006 26.9 2.5 16 437-452 6-21 (55)
117 TIGR03437 Soli_cterm Solibacte 38.9 69 0.0015 31.9 5.8 40 554-596 176-215 (215)
118 PRK03629 tolB translocation pr 36.4 6E+02 0.013 27.7 14.3 84 122-210 268-351 (429)
119 TIGR02800 propeller_TolB tol-p 36.2 5.6E+02 0.012 27.3 14.2 90 122-216 259-348 (417)
120 KOG0289 mRNA splicing factor [ 35.9 6.4E+02 0.014 27.9 12.9 143 256-451 350-496 (506)
121 PF15418 DUF4625: Domain of un 35.8 3.5E+02 0.0075 24.7 10.4 104 483-595 13-131 (132)
122 KOG2055 WD40 repeat protein [G 35.7 6E+02 0.013 28.2 12.5 131 122-282 281-418 (514)
123 PRK01742 tolB translocation pr 34.9 4.2E+02 0.009 28.9 11.9 80 122-207 229-309 (429)
124 KOG0649 WD40 repeat protein [G 34.7 5.1E+02 0.011 26.5 11.0 97 320-454 125-229 (325)
125 PF07705 CARDB: CARDB; InterP 32.3 2.4E+02 0.0052 23.2 7.6 71 493-583 12-83 (101)
126 COG1520 FOG: WD40-like repeat 31.9 6.4E+02 0.014 26.7 12.7 81 351-450 123-205 (370)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 31.1 4.8E+02 0.01 29.6 11.8 23 262-284 67-90 (527)
128 KOG0263 Transcription initiati 30.8 2.6E+02 0.0057 32.6 9.4 88 122-217 558-646 (707)
129 COG3490 Uncharacterized protei 30.6 2.6E+02 0.0056 29.3 8.4 90 369-475 110-203 (366)
130 KOG0266 WD40 repeat-containing 29.9 7.8E+02 0.017 27.1 24.1 234 148-476 166-411 (456)
131 PRK05137 tolB translocation pr 29.2 7.7E+02 0.017 26.8 13.1 81 122-207 227-307 (435)
132 PRK01029 tolB translocation pr 29.2 3E+02 0.0065 30.1 9.6 59 122-182 352-410 (428)
133 KOG0272 U4/U6 small nuclear ri 29.1 7.3E+02 0.016 27.3 11.7 111 262-427 312-426 (459)
134 KOG0285 Pleiotropic regulator 28.9 3.3E+02 0.0071 29.3 8.9 91 274-416 216-309 (460)
135 PRK04922 tolB translocation pr 28.7 7.8E+02 0.017 26.7 13.7 82 122-209 317-398 (433)
136 cd00604 IPT_CGTD IPT domain (d 28.4 3.4E+02 0.0074 22.4 8.3 77 485-594 1-78 (81)
137 cd00216 PQQ_DH Dehydrogenases 27.4 8.9E+02 0.019 26.9 15.0 148 261-453 58-239 (488)
138 KOG1427 Uncharacterized conser 27.0 1.9E+02 0.0042 30.2 6.8 92 434-546 120-215 (443)
139 KOG0316 Conserved WD40 repeat- 26.6 7E+02 0.015 25.4 10.8 143 42-217 28-170 (307)
140 TIGR02658 TTQ_MADH_Hv methylam 26.6 8.2E+02 0.018 26.2 11.9 105 255-388 47-172 (352)
141 PLN00181 protein SPA1-RELATED; 25.9 1.2E+03 0.025 27.8 17.3 88 122-217 599-687 (793)
142 PF10670 DUF4198: Domain of un 25.8 5.6E+02 0.012 24.5 9.9 68 493-583 144-211 (215)
143 PF03089 RAG2: Recombination a 25.6 1.4E+02 0.0029 31.1 5.4 81 367-452 83-174 (337)
144 PF08662 eIF2A: Eukaryotic tra 25.5 1.6E+02 0.0035 28.4 5.9 56 379-451 108-163 (194)
145 PLN00033 photosystem II stabil 25.3 9.1E+02 0.02 26.3 16.0 77 126-209 265-347 (398)
146 COG3490 Uncharacterized protei 24.7 4.7E+02 0.01 27.4 9.0 84 122-207 92-179 (366)
147 KOG0639 Transducin-like enhanc 24.4 6.1E+02 0.013 28.6 10.3 140 265-453 432-573 (705)
148 KOG0649 WD40 repeat protein [G 24.0 7.9E+02 0.017 25.2 13.6 81 123-210 138-227 (325)
149 KOG1036 Mitotic spindle checkp 24.0 7.7E+02 0.017 25.9 10.5 86 123-219 118-209 (323)
150 PF13360 PQQ_2: PQQ-like domai 23.9 6.4E+02 0.014 24.1 15.2 24 261-284 73-97 (238)
151 TIGR02800 propeller_TolB tol-p 23.8 8.9E+02 0.019 25.7 12.5 59 122-182 215-273 (417)
152 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.6 3.3E+02 0.0072 30.8 8.8 96 320-449 68-172 (527)
153 PRK04922 tolB translocation pr 23.1 9.8E+02 0.021 25.9 14.5 81 122-207 273-353 (433)
154 KOG1332 Vesicle coat complex C 22.4 4E+02 0.0086 27.3 7.8 23 154-180 176-198 (299)
155 PF13570 PQQ_3: PQQ-like domai 22.2 1.8E+02 0.0039 20.0 4.1 36 362-415 4-40 (40)
156 PRK02889 tolB translocation pr 22.0 1E+03 0.022 25.8 12.5 83 122-209 265-347 (427)
157 PRK04792 tolB translocation pr 21.5 1.1E+03 0.024 25.9 12.6 60 122-183 243-302 (448)
158 PRK00178 tolB translocation pr 20.7 1.1E+03 0.023 25.4 14.4 83 122-209 268-350 (430)
159 KOG0263 Transcription initiati 20.5 4.6E+02 0.0099 30.7 8.9 60 377-454 583-642 (707)
160 PF06433 Me-amine-dh_H: Methyl 20.2 1.1E+03 0.023 25.3 12.1 140 121-289 118-285 (342)
161 PRK02889 tolB translocation pr 20.2 1.1E+03 0.024 25.5 12.3 79 122-206 221-300 (427)
162 COG3386 Gluconolactonase [Carb 20.2 8.1E+02 0.018 25.7 10.3 55 147-208 218-275 (307)
163 KOG0272 U4/U6 small nuclear ri 20.1 1.9E+02 0.0041 31.5 5.4 81 124-211 286-367 (459)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=1.3e-46 Score=373.96 Aligned_cols=237 Identities=48% Similarity=0.854 Sum_probs=209.2
Q ss_pred eeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCcccc-ccccCccccceeEEEEeCCCCCEEeCcCCCccccccCeecCC
Q 035640 74 MHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVA-DHITGELDCWCHSVLFDFETSELTALKLQTDTWCSSGGLTAD 152 (596)
Q Consensus 74 ~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~-~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~d 152 (596)
||++|+ ++|||+++++.+.|+|++.+++| +||.. +....+.||.+|+.+|||.|++++++...+|.||+++++|+|
T Consensus 1 mh~~~~-~~~~v~~~d~t~~g~s~~~~~~~--~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~d 77 (243)
T PF07250_consen 1 MHMALL-HNNKVIMFDRTNFGPSNISLPDG--RCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPD 77 (243)
T ss_pred CeEeEc-cCCEEEEEeCCCcccccccCCCC--ccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCC
Confidence 799999 99999999999999999999998 99982 212267899999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCeEEEEeCCC---CCceeecCcCCCCcccccEEEEccCCcEEEEcCCCCCcEEEeCCCCCCCCCccc
Q 035640 153 GDLVSTGGFGGGANTVRYLSTCD---GCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVF 229 (596)
Q Consensus 153 G~ilv~GG~~~g~~~v~~fdP~~---t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~yP~~~~w~~~~~~ 229 (596)
|+++++||+.+|.+.++.|+|+. +++|.+.++.|..+|||+|+++|+||+|+|+||+..+++|++|+... ......
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~-~~~~~~ 156 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP-GPGPVT 156 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC-CCCcee
Confidence 99999999999999999999983 48999987669999999999999999999999999999999976432 222334
Q ss_pred ccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecCCCCeEEEeeccccCCCCCCCCCceEEecc
Q 035640 230 FPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSVLLP 309 (596)
Q Consensus 230 ~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lp 309 (596)
++++..+.+. .++|+|||++++|||+||+++++.+++||++++++.+.+|.||++.|+||.+|++||||
T Consensus 157 ~~~l~~~~~~-----------~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLP 225 (243)
T PF07250_consen 157 LPFLSQTSDT-----------LPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLP 225 (243)
T ss_pred eecchhhhcc-----------CccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEec
Confidence 5566544322 36899999999999999999999999999999998778999999899999999999999
Q ss_pred c--cccccccccCCCEEEEEcC
Q 035640 310 L--KLRANNATATKAKVLVCGG 329 (596)
Q Consensus 310 l--~~~~~~~~~~~gkI~v~GG 329 (596)
| ++ .+++..+|+||||
T Consensus 226 l~~~~----~~~~~~evlvCGG 243 (243)
T PF07250_consen 226 LTDTP----PNNYTAEVLVCGG 243 (243)
T ss_pred CccCC----CCCCCeEEEEeCC
Confidence 9 54 3578999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=338.52 Aligned_cols=269 Identities=20% Similarity=0.267 Sum_probs=225.8
Q ss_pred CCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcC
Q 035640 81 KINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGG 160 (596)
Q Consensus 81 ~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG 160 (596)
..++++++||.... + +....+++|||.+++|..++.+...+|..+++..+|.||++||
T Consensus 283 ~~~~l~~vGG~~~~--------~--------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG 340 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQ--------G--------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGG 340 (571)
T ss_pred CCCeEEEECCCCCC--------C--------------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEcc
Confidence 35889999987520 1 0123589999999999999999999999999999999999999
Q ss_pred CCC---CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCC----CcEEEe-CCCCCCCCCcccccC
Q 035640 161 FGG---GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGA----FSYEYI-PPEGQSNKSPVFFPL 232 (596)
Q Consensus 161 ~~~---g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~----~~~E~y-P~~~~w~~~~~~~p~ 232 (596)
++. .++++++|||. +++|+.+++ |+.+|+.++++++ +|+||++||+++ .++|+| |.+++|.. ..||
T Consensus 341 ~~~~~~~l~~ve~YD~~-~~~W~~~a~-M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~---va~m 414 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPR-TNQWTPVAP-MNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP---VAPM 414 (571)
T ss_pred ccCCCcccceEEEecCC-CCceeccCC-ccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccc---cCCC
Confidence 983 36899999999 999999986 9999999999999 999999999986 479999 99999973 4445
Q ss_pred cccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEec--------ceeEEecCCCCeEEEeeccccCCCCCCCCCce
Q 035640 233 LKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSN--------NRSILLDPKANKVVREFPILTGGSRNYPASAM 304 (596)
Q Consensus 233 l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg--------~~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~ 304 (596)
+..+ +-++++..+|+||++|| +++|+|||.+|+|. .+|+|+. +|.+ .|.
T Consensus 415 ~~~r-------------------~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-~R~~--~g~ 471 (571)
T KOG4441|consen 415 LTRR-------------------SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-RRSG--FGV 471 (571)
T ss_pred Ccce-------------------eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc-cccc--ceE
Confidence 4321 45788899999999999 35899999999996 7999985 6654 455
Q ss_pred EEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeCCC
Q 035640 305 SVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTE 383 (596)
Q Consensus 305 av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG 383 (596)
++ ++++||++||.+ +. ..++++|+|||. +++|+.. +|+.+|..+. +++.+|
T Consensus 472 a~-------------~~~~iYvvGG~~-~~-----------~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g-~~~~~~ 523 (571)
T KOG4441|consen 472 AV-------------LNGKIYVVGGFD-GT-----------SALSSVERYDPE--TNQWTMVAPMTSPRSAVG-VVVLGG 523 (571)
T ss_pred EE-------------ECCEEEEECCcc-CC-----------CccceEEEEcCC--CCceeEcccCcccccccc-EEEECC
Confidence 54 499999999987 22 346789999998 9999999 9999999996 566699
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEE
Q 035640 384 DILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVL 439 (596)
Q Consensus 384 ~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~L 439 (596)
++|++||.+ +...+.++|+|||++| +|+...++...|.+.+++++
T Consensus 524 ~ly~vGG~~--------~~~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 524 KLYAVGGFD--------GNNNLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred EEEEEeccc--------CccccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 999999965 2345668999999999 99999998888888887776
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=319.46 Aligned_cols=249 Identities=22% Similarity=0.292 Sum_probs=205.8
Q ss_pred CCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCC-C----CcEEEe-CCCC
Q 035640 151 ADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRG-A----FSYEYI-PPEG 221 (596)
Q Consensus 151 ~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~-~----~~~E~y-P~~~ 221 (596)
..+.|+++||... ..+++++|||. +++|..++. |+.+|..++++++ +|+|||+||.+ + .++|+| |.++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~-~~~w~~~a~-m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK-TNEWSSLAP-MPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC-cCcEeecCC-CCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3588999999874 36899999999 999999986 9999999999999 89999999998 3 478999 9999
Q ss_pred CCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecce-------eEEecCCCCeEEEeeccccC
Q 035640 222 QSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNR-------SILLDPKANKVVREFPILTG 294 (596)
Q Consensus 222 ~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~-------~e~yDp~t~~w~~~lp~mp~ 294 (596)
+|.. ..||...+ .-+.++..+|+||++||.+ +|+|||.+|+|. .+++|+.
T Consensus 360 ~W~~---~a~M~~~R-------------------~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~ 416 (571)
T KOG4441|consen 360 QWTP---VAPMNTKR-------------------SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT 416 (571)
T ss_pred ceec---cCCccCcc-------------------ccceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc
Confidence 9963 33443221 2367788999999999964 899999999997 7999985
Q ss_pred CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCcc
Q 035640 295 GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRV 373 (596)
Q Consensus 295 ~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~ 373 (596)
.|.. .|+++ .+++||++||.+... ..++++++|||. +++|+.+ +|+.+|.
T Consensus 417 -~r~~--~gv~~-------------~~g~iYi~GG~~~~~-----------~~l~sve~YDP~--t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 417 -RRSG--HGVAV-------------LGGKLYIIGGGDGSS-----------NCLNSVECYDPE--TNTWTLIAPMNTRRS 467 (571)
T ss_pred -ceee--eEEEE-------------ECCEEEEEcCcCCCc-----------cccceEEEEcCC--CCceeecCCcccccc
Confidence 5532 33333 599999999976211 268999999998 9999999 9999999
Q ss_pred ccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCC
Q 035640 374 MGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 374 ~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
+++ ++..||+||++||.+. .....++|+|||+++ +|+.+++|+.+|..++++++ ++++|+.||...
T Consensus 468 ~~g-~a~~~~~iYvvGG~~~--------~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 468 GFG-VAVLNGKIYVVGGFDG--------TSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDG 533 (571)
T ss_pred cce-EEEECCEEEEECCccC--------CCccceEEEEcCCCC---ceeEcccCccccccccEEEE--CCEEEEEecccC
Confidence 997 5556999999999872 233557999999999 99999999999999999999 999999999655
Q ss_pred CccccCCCCCCcceEEEEcCCCC
Q 035640 454 NGYILDAKYPTELRVEKFSPPYL 476 (596)
Q Consensus 454 ~~~~~~~~~p~~~~vE~y~Ppyl 476 (596)
..+ ..++|+|+|..=
T Consensus 534 ~~~--------l~~ve~ydp~~d 548 (571)
T KOG4441|consen 534 NNN--------LNTVECYDPETD 548 (571)
T ss_pred ccc--------cceeEEcCCCCC
Confidence 433 358999988874
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=304.03 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=188.3
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEc
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTL 198 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L 198 (596)
...+|||.+++|+.++.++..++..+++..+++|||+||... ..+++++|||. +++|.++++ |+.+|.+++++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~~~~~-m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKIHVELPP-MIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCeEeeCCC-CcchhhceeEEEE
Confidence 368999999999999988877776677778999999999742 25789999999 999999986 9999999999999
Q ss_pred cCCcEEEEcCCCC----CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc
Q 035640 199 PDGGFIVVGGRGA----FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN 273 (596)
Q Consensus 199 ~dG~VyViGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~ 273 (596)
+|+|||+||.++ .++|+| |.+++|.. ..|+.... .-++.++.+|+||++||.
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r-------------------~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL-------------------SSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc-------------------ccccEEEECCEEEEEeCC
Confidence 999999999864 468999 99999963 22332211 124556789999999984
Q ss_pred -------------------------eeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEc
Q 035640 274 -------------------------RSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCG 328 (596)
Q Consensus 274 -------------------------~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~G 328 (596)
++++|||.+|+|. .+++|+. +|.. .+.++ .+++||++|
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~-~r~~--~~~~~-------------~~~~IYv~G 470 (557)
T PHA02713 408 TEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT-GTIR--PGVVS-------------HKDDIYVVC 470 (557)
T ss_pred CcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc-cccc--CcEEE-------------ECCEEEEEe
Confidence 3789999999997 7999985 5643 34444 489999999
Q ss_pred CccCCccccccccccccCCCCceEEEEeeCCC-CceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCc
Q 035640 329 GAQWDSFYFSETKKQFFPALQDCGRIDITKPN-AVWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNL 406 (596)
Q Consensus 329 G~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~-~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~ 406 (596)
|.+... ...+++++|||. + ++|+.. +|+.+|..++++ +.+|+||++||.+ | ..
T Consensus 471 G~~~~~-----------~~~~~ve~Ydp~--~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~-~----------~~ 525 (557)
T PHA02713 471 DIKDEK-----------NVKTCIFRYNTN--TYNGWELITTTESRLSALHTI-LHDNTIMMLHCYE-S----------YM 525 (557)
T ss_pred CCCCCC-----------ccceeEEEecCC--CCCCeeEccccCcccccceeE-EECCEEEEEeeec-c----------ee
Confidence 975211 113467999997 7 799999 999999999755 5599999999975 2 12
Q ss_pred ccEEEcCCCCCCCceEEecCC
Q 035640 407 VPALYTPRGPSRQRFKELAAG 427 (596)
Q Consensus 407 s~e~YDP~t~~g~~Wt~~a~~ 427 (596)
++|+|||.|+ +|+.+++-
T Consensus 526 ~~e~yd~~~~---~W~~~~~~ 543 (557)
T PHA02713 526 LQDTFNVYTY---EWNHICHQ 543 (557)
T ss_pred ehhhcCcccc---cccchhhh
Confidence 6899999999 99988875
No 5
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=8.9e-33 Score=237.97 Aligned_cols=99 Identities=30% Similarity=0.416 Sum_probs=88.6
Q ss_pred CCCCCCCeeeeCCCC-CeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCC
Q 035640 479 SLAWLRPSIVVDSSD-KVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEG 557 (596)
Q Consensus 479 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g 557 (596)
|..+.||+|+++ | .+++||++|+|+++. .+.+|+|+|++|+||++|||||+|+|+++.. .
T Consensus 1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~--------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~--------~- 61 (101)
T cd02851 1 GTLASRPVITSA--STQTAKVGDTITVSTDS--------PISSASLVRYGSATHTVNTDQRRIPLTLFSV--------G- 61 (101)
T ss_pred CCCCCCCeeccC--CccccccCCEEEEEEec--------cceEEEEEecccccccccCCccEEEeeeEec--------C-
Confidence 356789999998 8 899999999998862 4799999999999999999999999999752 2
Q ss_pred ceEEEEEcCCCCCcCCCcceEEEEEc-CCcCCccEEEEeC
Q 035640 558 LHDIIALAPSSGAVAPPGYYLLYVVY-KGVPSVAMWVQIK 596 (596)
Q Consensus 558 ~~~~~v~~P~~~~v~pPG~ymLFv~~-~gvPS~a~~v~i~ 596 (596)
++.+++++|+|++|||||||||||++ +||||+|+||+|+
T Consensus 62 ~~~~~v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 62 GNSYSVQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred CCEEEEEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 35778888999999999999999995 9999999999985
No 6
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=99.97 E-value=3e-32 Score=234.97 Aligned_cols=97 Identities=42% Similarity=0.740 Sum_probs=67.9
Q ss_pred CCeeeeCCCCCeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCCceEEEE
Q 035640 484 RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEGLHDIIA 563 (596)
Q Consensus 484 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g~~~~~v 563 (596)
||+|+++ |..+.||++|+|+++.+ ...++.+|+|+|++|+|||+|||||+|+|++... + +++++|
T Consensus 1 RP~i~~~--p~~i~yg~~~tv~~~~~----~~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~--------~-~~~~~v 65 (98)
T PF09118_consen 1 RPVITSA--PTTIKYGQTFTVTVTVP----SAASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG--------G-GNTVTV 65 (98)
T ss_dssp ---EEES---SEEETT-EEEEEE--S----S---ESEEEEEE--EEETTB-SS-EEEEE-EEEE--------S-SSEEEE
T ss_pred CCccccC--CCeEecCCEEEEEEECC----CccceEEEEEEeCCcccccccCCCCEEeeeeecC--------C-CCEEEE
Confidence 9999997 99999999999999853 1247899999999999999999999999999542 2 479999
Q ss_pred EcCCCCCcCCCcceEEEEEc-CCcCCccEEEEe
Q 035640 564 LAPSSGAVAPPGYYLLYVVY-KGVPSVAMWVQI 595 (596)
Q Consensus 564 ~~P~~~~v~pPG~ymLFv~~-~gvPS~a~~v~i 595 (596)
++|+|++|+|||||||||++ +||||+|+||+|
T Consensus 66 ~~P~~~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 66 TAPPNPNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp E--S-TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred ECCCCCccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 99999999999999999999 999999999997
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=292.36 Aligned_cols=255 Identities=11% Similarity=0.109 Sum_probs=189.9
Q ss_pred cEEEEcCCCC-CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCC-----CcEEEe-CCCCCCCCC
Q 035640 154 DLVSTGGFGG-GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGA-----FSYEYI-PPEGQSNKS 226 (596)
Q Consensus 154 ~ilv~GG~~~-g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~-----~~~E~y-P~~~~w~~~ 226 (596)
.+++.||... ....+++|||. +++|..++. |+.+|.+++++++ +|+|||+||... .++|+| |.+++|..
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~-~~~W~~l~~-mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~- 334 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNIN-TMEYSVIST-IPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE- 334 (557)
T ss_pred EEEEecCccccCCCCEEEEeCC-CCeEEECCC-CCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEee-
Confidence 3555555321 22468999999 999999985 9999999988888 999999999741 468999 99998852
Q ss_pred cccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc-------eeEEecCCCCeEEEeeccccCCCCCC
Q 035640 227 PVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN-------RSILLDPKANKVVREFPILTGGSRNY 299 (596)
Q Consensus 227 ~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~-------~~e~yDp~t~~w~~~lp~mp~~~R~~ 299 (596)
..|+.... .-++.++.+|+||++||. ++|+|||.+++|. .+++||. +|..
T Consensus 335 --~~~m~~~R-------------------~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~-~r~~ 391 (557)
T PHA02713 335 --LPPMIKNR-------------------CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI-ALSS 391 (557)
T ss_pred --CCCCcchh-------------------hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc-cccc
Confidence 22332111 225677889999999995 3799999999997 7999995 5643
Q ss_pred CCCceEEeccccccccccccCCCEEEEEcCccCCc-ccc-cccc----ccccCCCCceEEEEeeCCCCceEee-cCCCCc
Q 035640 300 PASAMSVLLPLKLRANNATATKAKVLVCGGAQWDS-FYF-SETK----KQFFPALQDCGRIDITKPNAVWKKE-RMPSPR 372 (596)
Q Consensus 300 p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~-~~~-~~~~----~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R 372 (596)
.++++ ++++||++||.+... +.. ...+ ......++++++|||. +++|+.. +|+.+|
T Consensus 392 --~~~~~-------------~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r 454 (557)
T PHA02713 392 --YGMCV-------------LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGT 454 (557)
T ss_pred --ccEEE-------------ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCccc
Confidence 23333 489999999975210 000 0000 0001136789999998 8999999 999999
Q ss_pred cccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCC-CCCCceEEecCCCcccccceEEEEcCCCcEEEecCC
Q 035640 373 VMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRG-PSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 373 ~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t-~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
..+++ +..+|+|||+||.+. . ..-...+|+|||++ | +|+.+++|+.+|..|+++++ ||+||++||.
T Consensus 455 ~~~~~-~~~~~~IYv~GG~~~-~------~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~ 521 (557)
T PHA02713 455 IRPGV-VSHKDDIYVVCDIKD-E------KNVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHCY 521 (557)
T ss_pred ccCcE-EEECCEEEEEeCCCC-C------CccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEeee
Confidence 99975 455999999999752 1 11123579999999 9 99999999999999999999 9999999996
Q ss_pred CCCccccCCCCCCcceEEEEcCCCC
Q 035640 452 THNGYILDAKYPTELRVEKFSPPYL 476 (596)
Q Consensus 452 ~~~~~~~~~~~p~~~~vE~y~Ppyl 476 (596)
... ..+|+|+|..-
T Consensus 522 ~~~-----------~~~e~yd~~~~ 535 (557)
T PHA02713 522 ESY-----------MLQDTFNVYTY 535 (557)
T ss_pred cce-----------eehhhcCcccc
Confidence 531 26899998874
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.4e-28 Score=260.75 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=177.4
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeC--CCCCceeecCcCCC-CcccccEEEEccCCcEEEEcCCCC----------Cc
Q 035640 147 GGLTADGDLVSTGGFGGGANTVRYLST--CDGCDWREYPTALA-DPRWYSTQVTLPDGGFIVVGGRGA----------FS 213 (596)
Q Consensus 147 ~~~l~dG~ilv~GG~~~g~~~v~~fdP--~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyViGG~~~----------~~ 213 (596)
.+++.+++|||+||.. .+.+.+||+ . +++|.++++ |+ .+|.+++++++ |++|||+||... ..
T Consensus 12 ~~~~~~~~vyv~GG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSA--GTSWYKLDLKKP-SKGWQKIAD-FPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred eEEEECCEEEEEcccc--CCeeEEEECCCC-CCCceECCC-CCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceeccc
Confidence 3556699999999974 367889996 4 688999986 98 58999988888 999999999742 35
Q ss_pred EEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEE-cCCCcEEEEecc------------------
Q 035640 214 YEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYL-SPDGNLFIFSNN------------------ 273 (596)
Q Consensus 214 ~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~-~~dG~Ifv~Gg~------------------ 273 (596)
+|+| |.+++|.... .++. + ..+.++.+ +.+|+||++||.
T Consensus 87 v~~Yd~~~~~W~~~~--~~~p-~------------------~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 145 (346)
T TIGR03547 87 VYRYDPKKNSWQKLD--TRSP-V------------------GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKD 145 (346)
T ss_pred EEEEECCCCEEecCC--CCCC-C------------------cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCcc
Confidence 7899 9999996421 1111 1 11223334 689999999984
Q ss_pred -----------------------eeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCc
Q 035640 274 -----------------------RSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGA 330 (596)
Q Consensus 274 -----------------------~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~ 330 (596)
++|+|||.+++|. .+++||..+|.. ++.++ .+++||++||.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~r~~--~~~~~-------------~~~~iyv~GG~ 209 (346)
T TIGR03547 146 SEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR-NLGENPFLGTAG--SAIVH-------------KGNKLLLINGE 209 (346)
T ss_pred chhhhhhHHHHhCCChhHcCccceEEEEECCCCcee-ECccCCCCcCCC--ceEEE-------------ECCEEEEEeee
Confidence 4789999999997 789998433431 22222 48999999996
Q ss_pred cCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCcc-------ccceEEeCCCeEEEEcCCCCCCC------
Q 035640 331 QWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRV-------MGDMVILPTEDILLLNGAKTGTS------ 396 (596)
Q Consensus 331 ~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~-------~~~avvLpdG~V~vvGG~~~g~~------ 396 (596)
.... ..+..++.||+...+++|+.. +|+.+|. .+. +++.+|+|||+||.+....
T Consensus 210 ~~~~-----------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~-a~~~~~~Iyv~GG~~~~~~~~~~~~ 277 (346)
T TIGR03547 210 IKPG-----------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAF-AGISNGVLLVAGGANFPGAQENYKN 277 (346)
T ss_pred eCCC-----------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEe-eeEECCEEEEeecCCCCCchhhhhc
Confidence 4211 112345556664336899998 9988763 232 4456999999999752100
Q ss_pred C--CC-CCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCCC
Q 035640 397 G--WN-DAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 397 g--~~-~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
+ +. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||....
T Consensus 278 ~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 278 GKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred CCccccCCCCceeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 0 00 00112346899999999 99999999999999887777 9999999997544
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=9.8e-28 Score=264.99 Aligned_cols=218 Identities=15% Similarity=0.230 Sum_probs=173.2
Q ss_pred EeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCC--CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcE
Q 035640 126 FDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGG--GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGF 203 (596)
Q Consensus 126 yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~--g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~V 203 (596)
|++.+++|..+. ..| .++..++.||++||... ..+++++|||. +++|..+++ |+.+|.+++++++ ||+|
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~-m~~~r~~~~~v~~-~~~i 321 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPP-MNSPRLYASGVPA-NNKL 321 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCC-CCchhhcceEEEE-CCEE
Confidence 456667776642 122 23346889999999753 35789999999 999999986 9999999998888 9999
Q ss_pred EEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecCCCC
Q 035640 204 IVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKAN 283 (596)
Q Consensus 204 yViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp~t~ 283 (596)
|++||.+.. . ++|+|||.+|
T Consensus 322 YviGG~~~~----------------------~--------------------------------------sve~ydp~~n 341 (480)
T PHA02790 322 YVVGGLPNP----------------------T--------------------------------------SVERWFHGDA 341 (480)
T ss_pred EEECCcCCC----------------------C--------------------------------------ceEEEECCCC
Confidence 999995310 0 2567999999
Q ss_pred eEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCce
Q 035640 284 KVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVW 363 (596)
Q Consensus 284 ~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W 363 (596)
+|. .+|+||. +|.. .++++ .+++||++||.+ +. .+++++|||. +++|
T Consensus 342 ~W~-~~~~l~~-~r~~--~~~~~-------------~~g~IYviGG~~-~~-------------~~~ve~ydp~--~~~W 388 (480)
T PHA02790 342 AWV-NMPSLLK-PRCN--PAVAS-------------INNVIYVIGGHS-ET-------------DTTTEYLLPN--HDQW 388 (480)
T ss_pred eEE-ECCCCCC-CCcc--cEEEE-------------ECCEEEEecCcC-CC-------------CccEEEEeCC--CCEE
Confidence 997 7999984 6643 23333 499999999965 11 2578999987 8999
Q ss_pred Eee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCC
Q 035640 364 KKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPD 442 (596)
Q Consensus 364 ~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpD 442 (596)
+.. +|+.+|..++++ ..+|+|||+||. .|+|||++| +|+.+++|+.+|..|+++++ +
T Consensus 389 ~~~~~m~~~r~~~~~~-~~~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~~~r~~~~~~v~--~ 446 (480)
T PHA02790 389 QFGPSTYYPHYKSCAL-VFGRRLFLVGRN----------------AEFYCESSN---TWTLIDDPIYPRDNPELIIV--D 446 (480)
T ss_pred EeCCCCCCccccceEE-EECCEEEEECCc----------------eEEecCCCC---cEeEcCCCCCCccccEEEEE--C
Confidence 999 999999999754 559999999983 389999999 99999999999999999998 9
Q ss_pred CcEEEecCCCCCccccCCCCCCcceEEEEcCCC
Q 035640 443 GTVLVAGSNTHNGYILDAKYPTELRVEKFSPPY 475 (596)
Q Consensus 443 G~Vlv~GG~~~~~~~~~~~~p~~~~vE~y~Ppy 475 (596)
|+|||.||.....+ ...+|+|+|..
T Consensus 447 ~~IYviGG~~~~~~--------~~~ve~Yd~~~ 471 (480)
T PHA02790 447 NKLLLIGGFYRGSY--------IDTIEVYNNRT 471 (480)
T ss_pred CEEEEECCcCCCcc--------cceEEEEECCC
Confidence 99999999753321 24799999975
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=6.3e-27 Score=251.13 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=179.9
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCC-CCceeecCcCCC-CcccccEEEEccCCcEEEEcCCCC----------CcEE
Q 035640 148 GLTADGDLVSTGGFGGGANTVRYLSTCD-GCDWREYPTALA-DPRWYSTQVTLPDGGFIVVGGRGA----------FSYE 215 (596)
Q Consensus 148 ~~l~dG~ilv~GG~~~g~~~v~~fdP~~-t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyViGG~~~----------~~~E 215 (596)
++..+++|||+||... +.+.+||+.. +++|.++++ |+ .+|..++++++ +++|||+||... ..++
T Consensus 34 ~~~~~~~iyv~gG~~~--~~~~~~d~~~~~~~W~~l~~-~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~ 109 (376)
T PRK14131 34 GAIDNNTVYVGLGSAG--TSWYKLDLNAPSKGWTKIAA-FPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVY 109 (376)
T ss_pred EEEECCEEEEEeCCCC--CeEEEEECCCCCCCeEECCc-CCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEE
Confidence 4556999999999743 5688898752 478999985 87 58988888888 899999999753 3578
Q ss_pred Ee-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEc-CCCcEEEEecc--------------------
Q 035640 216 YI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLS-PDGNLFIFSNN-------------------- 273 (596)
Q Consensus 216 ~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~-~dG~Ifv~Gg~-------------------- 273 (596)
.| |.+++|.... +...+ ..+.++.++ .+++||++||.
T Consensus 110 ~YD~~~n~W~~~~---~~~p~------------------~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 110 KYDPKTNSWQKLD---TRSPV------------------GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred EEeCCCCEEEeCC---CCCCC------------------cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 89 9999886311 11111 112233343 79999999994
Q ss_pred ---------------------eeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccC
Q 035640 274 ---------------------RSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQW 332 (596)
Q Consensus 274 ---------------------~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~ 332 (596)
++++||+.+|+|. .+++||...|. +.++. ..+++||++||...
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~----~~a~v-----------~~~~~iYv~GG~~~ 232 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFLGTA----GSAVV-----------IKGNKLWLINGEIK 232 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCCCCC----cceEE-----------EECCEEEEEeeeEC
Confidence 3789999999997 68888842342 22322 14899999999642
Q ss_pred CccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCcccc-------ceEEeCCCeEEEEcCCCCCCC------C-
Q 035640 333 DSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMG-------DMVILPTEDILLLNGAKTGTS------G- 397 (596)
Q Consensus 333 ~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~-------~avvLpdG~V~vvGG~~~g~~------g- 397 (596)
.. .....+..+++...+++|+.. +|+.+|..+ .++++.+|+|||+||...... +
T Consensus 233 ~~-----------~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~ 301 (376)
T PRK14131 233 PG-----------LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGK 301 (376)
T ss_pred CC-----------cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCC
Confidence 11 011223333332226899998 999887421 124556999999999753100 0
Q ss_pred -CC-CCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCCCccccCCCCCCcceEEEEcCC
Q 035640 398 -WN-DAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPP 474 (596)
Q Consensus 398 -~~-~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~~~~~~~~~p~~~~vE~y~Pp 474 (596)
+. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||....+. ...++++|.|.
T Consensus 302 ~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~~-------~~~~v~~~~~~ 368 (376)
T PRK14131 302 LYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGGK-------AVSDVTLLSWD 368 (376)
T ss_pred cccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCCc-------EeeeEEEEEEc
Confidence 00 00112346899999999 99999999999999987777 999999999754321 13478888765
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2.9e-26 Score=253.30 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=164.5
Q ss_pred CCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCC
Q 035640 82 INKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGF 161 (596)
Q Consensus 82 ~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~ 161 (596)
+++||++||.+.. . ....+.+|||.+++|..++.+...++..+.+..+|+||++||.
T Consensus 271 ~~~lyviGG~~~~--------~---------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 271 GEVVYLIGGWMNN--------E---------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGL 327 (480)
T ss_pred CCEEEEEcCCCCC--------C---------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCc
Confidence 7899999986411 0 0235789999999999999998888777777789999999997
Q ss_pred CCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCC
Q 035640 162 GGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLK 241 (596)
Q Consensus 162 ~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~ 241 (596)
.. .+++++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+.. .
T Consensus 328 ~~-~~sve~ydp~-~n~W~~~~~-l~~~r~~~~~~~~-~g~IYviGG~~~~--------------------~-------- 375 (480)
T PHA02790 328 PN-PTSVERWFHG-DAAWVNMPS-LLKPRCNPAVASI-NNVIYVIGGHSET--------------------D-------- 375 (480)
T ss_pred CC-CCceEEEECC-CCeEEECCC-CCCCCcccEEEEE-CCEEEEecCcCCC--------------------C--------
Confidence 53 4679999999 999999985 9999999998888 9999999995310 0
Q ss_pred CcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCC
Q 035640 242 GIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATK 321 (596)
Q Consensus 242 g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~ 321 (596)
..+++|||.+++|. .+|+|+. +|.. .++++ .+
T Consensus 376 -------------------------------~~ve~ydp~~~~W~-~~~~m~~-~r~~--~~~~~-------------~~ 407 (480)
T PHA02790 376 -------------------------------TTTEYLLPNHDQWQ-FGPSTYY-PHYK--SCALV-------------FG 407 (480)
T ss_pred -------------------------------ccEEEEeCCCCEEE-eCCCCCC-cccc--ceEEE-------------EC
Confidence 02578999999997 7999984 5643 23333 48
Q ss_pred CEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCC
Q 035640 322 AKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWND 400 (596)
Q Consensus 322 gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~ 400 (596)
++||++||. +++||+. +++|+.. +|+.+|..+++ ++.+|+|||+||.+.+
T Consensus 408 ~~IYv~GG~--------------------~e~ydp~--~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~------ 458 (480)
T PHA02790 408 RRLFLVGRN--------------------AEFYCES--SNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRG------ 458 (480)
T ss_pred CEEEEECCc--------------------eEEecCC--CCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCC------
Confidence 999999983 3678887 8999998 99999999975 4559999999997521
Q ss_pred CCCCCcccEEEcCCCCCCCceEEe
Q 035640 401 AEDPNLVPALYTPRGPSRQRFKEL 424 (596)
Q Consensus 401 ~~~~~~s~e~YDP~t~~g~~Wt~~ 424 (596)
..+.++|+|||+++ +|+.+
T Consensus 459 --~~~~~ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 459 --SYIDTIEVYNNRTY---SWNIW 477 (480)
T ss_pred --cccceEEEEECCCC---eEEec
Confidence 12357999999999 99865
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.94 E-value=7.4e-26 Score=237.86 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=175.6
Q ss_pred ecCCCcEEEEcCCCCC------------CCeEEEEe-CCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCC----
Q 035640 149 LTADGDLVSTGGFGGG------------ANTVRYLS-TCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGA---- 211 (596)
Q Consensus 149 ~l~dG~ilv~GG~~~g------------~~~v~~fd-P~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~---- 211 (596)
...++.|||+||.+.. .+++.+|+ +..+.+|.++++ |+.+|.+++++++ +++||++||.+.
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-lp~~r~~~~~~~~-~~~lyviGG~~~~~~~ 87 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-LPYEAAYGASVSV-ENGIYYIGGSNSSERF 87 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-CCccccceEEEEE-CCEEEEEcCCCCCCCc
Confidence 3458899999997531 12455564 431237999875 9999988888888 899999999754
Q ss_pred CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc-------eeEEecCCCC
Q 035640 212 FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN-------RSILLDPKAN 283 (596)
Q Consensus 212 ~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~-------~~e~yDp~t~ 283 (596)
..++.| +.+++|...|..++-+... ...++.++.+++||++||. ++++||+.++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~------------------~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFT------------------FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcC------------------ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 357788 8888774223333322111 1225567789999999994 5899999999
Q ss_pred eEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCce
Q 035640 284 KVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVW 363 (596)
Q Consensus 284 ~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W 363 (596)
+|. .+++||..+|.. ..++. .+++||++||.+. . ...++++||+. +++|
T Consensus 150 ~W~-~~~~~p~~~r~~---~~~~~------------~~~~iYv~GG~~~-~------------~~~~~~~yd~~--~~~W 198 (323)
T TIGR03548 150 EWF-ELPDFPGEPRVQ---PVCVK------------LQNELYVFGGGSN-I------------AYTDGYKYSPK--KNQW 198 (323)
T ss_pred Cee-ECCCCCCCCCCc---ceEEE------------ECCEEEEEcCCCC-c------------cccceEEEecC--CCee
Confidence 997 799888545542 22332 4899999999751 1 12456899998 8999
Q ss_pred Eee-cCC---CCc--cccceEEeCCCeEEEEcCCCCCCC-----CCC-------------------CCCCCCcccEEEcC
Q 035640 364 KKE-RMP---SPR--VMGDMVILPTEDILLLNGAKTGTS-----GWN-------------------DAEDPNLVPALYTP 413 (596)
Q Consensus 364 ~~~-~M~---~~R--~~~~avvLpdG~V~vvGG~~~g~~-----g~~-------------------~~~~~~~s~e~YDP 413 (596)
+.. +|+ .+| ..+.++++.+++|||+||.+.... .+. .......++|+|||
T Consensus 199 ~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 278 (323)
T TIGR03548 199 QKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV 278 (323)
T ss_pred EECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC
Confidence 988 774 343 334446667899999999752100 000 00001236899999
Q ss_pred CCCCCCceEEecCCC-cccccceEEEEcCCCcEEEecCCCCCc
Q 035640 414 RGPSRQRFKELAAGT-IPRMYHSSSVLLPDGTVLVAGSNTHNG 455 (596)
Q Consensus 414 ~t~~g~~Wt~~a~~~-~~R~yhs~a~LlpDG~Vlv~GG~~~~~ 455 (596)
.++ +|+.+++++ .+|..|+++++ |++||+.||....+
T Consensus 279 ~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~pg 316 (323)
T TIGR03548 279 RTG---KWKSIGNSPFFARCGAALLLT--GNNIFSINGELKPG 316 (323)
T ss_pred CCC---eeeEcccccccccCchheEEE--CCEEEEEeccccCC
Confidence 999 999999887 68999988888 99999999975443
No 13
>PLN02153 epithiospecifier protein
Probab=99.94 E-value=3.5e-25 Score=234.56 Aligned_cols=280 Identities=14% Similarity=0.094 Sum_probs=187.0
Q ss_pred CCCCEEeCcC----CCccccccCeecCCCcEEEEcCCCC----CCCeEEEEeCCCCCceeecCcCCC-Cccc---ccEEE
Q 035640 129 ETSELTALKL----QTDTWCSSGGLTADGDLVSTGGFGG----GANTVRYLSTCDGCDWREYPTALA-DPRW---YSTQV 196 (596)
Q Consensus 129 ~t~~w~~l~~----~~~~fc~~~~~l~dG~ilv~GG~~~----g~~~v~~fdP~~t~~W~~~~~~M~-~~R~---y~s~~ 196 (596)
...+|+.+.. ++..++..+++..+++|||+||... ..+.+++||+. +++|+.++. |. .+|. .++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN-THTWSIAPA-NGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC-CCEEEEcCc-cCCCCCCccCceEEE
Confidence 4567888865 3455665566677999999999742 13679999999 999998865 53 4443 46667
Q ss_pred EccCCcEEEEcCCCC----CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEe
Q 035640 197 TLPDGGFIVVGGRGA----FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFS 271 (596)
Q Consensus 197 ~L~dG~VyViGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~G 271 (596)
++ +++|||+||... ..+++| |++++|.. ++.+.... .+...+-++.++.+++||++|
T Consensus 83 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~----~~~~~~~~-------------~p~~R~~~~~~~~~~~iyv~G 144 (341)
T PLN02153 83 AV-GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF----LTKLDEEG-------------GPEARTFHSMASDENHVYVFG 144 (341)
T ss_pred EE-CCEEEEECCCCCCCccCcEEEEECCCCEEEE----eccCCCCC-------------CCCCceeeEEEEECCEEEEEC
Confidence 77 899999999753 367889 99998852 11110000 000112356677899999999
Q ss_pred cc-------------eeEEecCCCCeEEEeeccccC--CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccc
Q 035640 272 NN-------------RSILLDPKANKVVREFPILTG--GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFY 336 (596)
Q Consensus 272 g~-------------~~e~yDp~t~~w~~~lp~mp~--~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 336 (596)
|. ++++||+++++|. .++++.. .+|.. + ++++ .+++||++||... .+.
T Consensus 145 G~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~--~-~~~~------------~~~~iyv~GG~~~-~~~ 207 (341)
T PLN02153 145 GVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGG--A-GFAV------------VQGKIWVVYGFAT-SIL 207 (341)
T ss_pred CccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCc--c-eEEE------------ECCeEEEEecccc-ccc
Confidence 94 3678999999997 6877631 13421 1 2222 4899999999641 100
Q ss_pred cccccccccCCCCceEEEEeeCCCCceEee-c---CCCCccccceEEeCCCeEEEEcCCCCCC-CCCCCCCCCCcccEEE
Q 035640 337 FSETKKQFFPALQDCGRIDITKPNAVWKKE-R---MPSPRVMGDMVILPTEDILLLNGAKTGT-SGWNDAEDPNLVPALY 411 (596)
Q Consensus 337 ~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~---M~~~R~~~~avvLpdG~V~vvGG~~~g~-~g~~~~~~~~~s~e~Y 411 (596)
. .+.....++.+++||+. +++|+.. . ||.+|..+++ ++.+++|||+||..... .+..........+++|
T Consensus 208 ~---gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 208 P---GGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL 281 (341)
T ss_pred c---CCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEE
Confidence 0 00001125678999988 8999986 3 7889998864 55699999999974210 0000001112368999
Q ss_pred cCCCCCCCceEEec-----CCCcccccceEEEEcCCCcEEEecCCCCC
Q 035640 412 TPRGPSRQRFKELA-----AGTIPRMYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 412 DP~t~~g~~Wt~~a-----~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
||+++ +|+.+. +++..|.+|+++...-+++||+.||....
T Consensus 282 d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 282 DTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred EcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 99999 999885 56666766667766556799999998654
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1.4e-25 Score=251.41 Aligned_cols=245 Identities=19% Similarity=0.247 Sum_probs=189.4
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEc
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTL 198 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L 198 (596)
...+|++.+++|..+.......|. +++..++.||++||... ..+++..||+. +++|..+++ |+.+|.+++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCF-GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK-TKSWNKVPE-LIYPRKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccccccc-eEEEECCEEEEECCCcCCCCeeccEEEEeCC-CCeeeECCC-CCcccccceEEEE
Confidence 356789999999998765544453 45667999999999863 23579999999 999999985 9999999998888
Q ss_pred cCCcEEEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEe
Q 035640 199 PDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILL 278 (596)
Q Consensus 199 ~dG~VyViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~y 278 (596)
+|+|||+||..... .. +++++|
T Consensus 342 -~~~lyv~GG~~~~~---------------------~~------------------------------------~~v~~y 363 (534)
T PHA03098 342 -NNRIYVIGGIYNSI---------------------SL------------------------------------NTVESW 363 (534)
T ss_pred -CCEEEEEeCCCCCE---------------------ec------------------------------------ceEEEE
Confidence 99999999964210 00 135789
Q ss_pred cCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeC
Q 035640 279 DPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITK 358 (596)
Q Consensus 279 Dp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~ 358 (596)
|+.+++|. .+++||. +|.. .+++. .+++||++||...+. ..++++++||+.
T Consensus 364 d~~~~~W~-~~~~lp~-~r~~---~~~~~------------~~~~iYv~GG~~~~~-----------~~~~~v~~yd~~- 414 (534)
T PHA03098 364 KPGESKWR-EEPPLIF-PRYN---PCVVN------------VNNLIYVIGGISKND-----------ELLKTVECFSLN- 414 (534)
T ss_pred cCCCCcee-eCCCcCc-CCcc---ceEEE------------ECCEEEEECCcCCCC-----------cccceEEEEeCC-
Confidence 99999997 7999985 5642 22222 489999999964211 136789999997
Q ss_pred CCCceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEE
Q 035640 359 PNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSS 437 (596)
Q Consensus 359 ~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a 437 (596)
+++|+.. +||.+|..++++ ..+|+|||+||..... .......+++|||+++ +|+.+++++.+|..|+.+
T Consensus 415 -t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~ 484 (534)
T PHA03098 415 -TNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLC 484 (534)
T ss_pred -CCeeeecCCCCccccCceEE-EECCEEEEECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEE
Confidence 8999998 999999999754 5599999999975211 1111335899999999 999999999999999988
Q ss_pred EEcCCCcEEEecCCCCCccccCCCCCCcceEEEEcCCCC
Q 035640 438 VLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYL 476 (596)
Q Consensus 438 ~LlpDG~Vlv~GG~~~~~~~~~~~~p~~~~vE~y~Ppyl 476 (596)
++ +|+|||.||.....+ ..++|+|+|..-
T Consensus 485 ~~--~~~iyv~GG~~~~~~--------~~~v~~yd~~~~ 513 (534)
T PHA03098 485 IF--NNKIYVVGGDKYEYY--------INEIEVYDDKTN 513 (534)
T ss_pred EE--CCEEEEEcCCcCCcc--------cceeEEEeCCCC
Confidence 87 999999999765422 247999998874
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=3.1e-24 Score=227.60 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=171.3
Q ss_pred eeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeC--CCCCEEeCcCCC-ccccccCeecCC
Q 035640 76 AILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDF--ETSELTALKLQT-DTWCSSGGLTAD 152 (596)
Q Consensus 76 ~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp--~t~~w~~l~~~~-~~fc~~~~~l~d 152 (596)
++++ +++||++||... ....+||+ .+++|+.++.++ ..++..+++..+
T Consensus 13 ~~~~--~~~vyv~GG~~~---------------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~ 63 (346)
T TIGR03547 13 GAII--GDKVYVGLGSAG---------------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID 63 (346)
T ss_pred EEEE--CCEEEEEccccC---------------------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC
Confidence 4454 899999987420 12456775 678999999886 467777777889
Q ss_pred CcEEEEcCCCC--------CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCC-------------
Q 035640 153 GDLVSTGGFGG--------GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGA------------- 211 (596)
Q Consensus 153 G~ilv~GG~~~--------g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~------------- 211 (596)
++|||+||... ..+.+++|||. +++|++++..|+..|..++++++.+|+|||+||.+.
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~-~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~ 142 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPK-KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAA 142 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECC-CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhc
Confidence 99999999742 14689999999 999999864366677666666334999999999752
Q ss_pred -------------------------CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCC
Q 035640 212 -------------------------FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDG 265 (596)
Q Consensus 212 -------------------------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG 265 (596)
.++|+| |.+++|.. ..++.... .+-++++..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~---~~~~p~~~------------------r~~~~~~~~~~ 201 (346)
T TIGR03547 143 DKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRN---LGENPFLG------------------TAGSAIVHKGN 201 (346)
T ss_pred CccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeE---CccCCCCc------------------CCCceEEEECC
Confidence 468999 99999963 12222111 12245667899
Q ss_pred cEEEEecce--------eEEe--cCCCCeEEEeeccccCCCCCC-CC--Cce-EEeccccccccccccCCCEEEEEcCcc
Q 035640 266 NLFIFSNNR--------SILL--DPKANKVVREFPILTGGSRNY-PA--SAM-SVLLPLKLRANNATATKAKVLVCGGAQ 331 (596)
Q Consensus 266 ~Ifv~Gg~~--------~e~y--Dp~t~~w~~~lp~mp~~~R~~-p~--~g~-av~lpl~~~~~~~~~~~gkI~v~GG~~ 331 (596)
+||++||.. .++| |+.+++|. .+++||. +|.. +. .+. +++ .+++||++||..
T Consensus 202 ~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~-~~~~m~~-~r~~~~~~~~~~~a~~------------~~~~Iyv~GG~~ 267 (346)
T TIGR03547 202 KLLLINGEIKPGLRTAEVKQYLFTGGKLEWN-KLPPLPP-PKSSSQEGLAGAFAGI------------SNGVLLVAGGAN 267 (346)
T ss_pred EEEEEeeeeCCCccchheEEEEecCCCceee-ecCCCCC-CCCCccccccEEeeeE------------ECCEEEEeecCC
Confidence 999999952 3445 45778997 7999984 4421 11 121 222 489999999975
Q ss_pred CCcccccccc-ccc----cCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCCC
Q 035640 332 WDSFYFSETK-KQF----FPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAK 392 (596)
Q Consensus 332 ~~~~~~~~~~-~~~----~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~ 392 (596)
.........+ ..+ ...+.++++||+. +++|+.. +||.+|..+. +++.+|+|||+||.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~~~~~~-~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 268 FPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKLPQGLAYGV-SVSWNNGVLLIGGEN 331 (346)
T ss_pred CCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCCCCCceeeE-EEEcCCEEEEEeccC
Confidence 1100000000 000 0123468899987 7899998 9999998875 566799999999986
No 16
>PLN02153 epithiospecifier protein
Probab=99.93 E-value=1.3e-23 Score=222.64 Aligned_cols=284 Identities=15% Similarity=0.191 Sum_probs=184.3
Q ss_pred CCCCceEeccCC-----CcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCC
Q 035640 57 GYNGKWELVSEN-----SGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETS 131 (596)
Q Consensus 57 ~~~g~W~~v~~~-----~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~ 131 (596)
+..++|..+... .++. -|.++. .+++||++||..... . . ......+||+.++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~-~h~~~~-~~~~iyv~GG~~~~~-------~--~------------~~~~~~~yd~~~~ 60 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRC-SHGIAV-VGDKLYSFGGELKPN-------E--H------------IDKDLYVFDFNTH 60 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCC-cceEEE-ECCEEEEECCccCCC-------C--c------------eeCcEEEEECCCC
Confidence 577889988641 2333 355555 589999999864110 0 0 0124789999999
Q ss_pred CEEeCcCCCc-c--ccc-cCeecCCCcEEEEcCCCCC--CCeEEEEeCCCCCceeecCcCC-----CCcccccEEEEccC
Q 035640 132 ELTALKLQTD-T--WCS-SGGLTADGDLVSTGGFGGG--ANTVRYLSTCDGCDWREYPTAL-----ADPRWYSTQVTLPD 200 (596)
Q Consensus 132 ~w~~l~~~~~-~--fc~-~~~~l~dG~ilv~GG~~~g--~~~v~~fdP~~t~~W~~~~~~M-----~~~R~y~s~~~L~d 200 (596)
+|+.++.+.. . .|. ..++..+++||++||.... .+.+++|||. +++|++++. | +.+|..++++++ +
T Consensus 61 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~-~~~~~~p~~R~~~~~~~~-~ 137 (341)
T PLN02153 61 TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV-KNEWTFLTK-LDEEGGPEARTFHSMASD-E 137 (341)
T ss_pred EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC-CCEEEEecc-CCCCCCCCCceeeEEEEE-C
Confidence 9999876532 2 233 3345669999999997532 4689999999 999998864 6 778999988887 8
Q ss_pred CcEEEEcCCCC----------CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEE
Q 035640 201 GGFIVVGGRGA----------FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFI 269 (596)
Q Consensus 201 G~VyViGG~~~----------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv 269 (596)
++|||+||... .++++| |++++|.. ++.+... +....-+.+++.+|+||+
T Consensus 138 ~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~----l~~~~~~---------------~~~r~~~~~~~~~~~iyv 198 (341)
T PLN02153 138 NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ----LPDPGEN---------------FEKRGGAGFAVVQGKIWV 198 (341)
T ss_pred CEEEEECCccCCCccCCCcccceEEEEECCCCeEee----CCCCCCC---------------CCCCCcceEEEECCeEEE
Confidence 99999999742 257889 99998863 2211100 000012345678999999
Q ss_pred Eecc---------------eeEEecCCCCeEEEeecc---ccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCcc
Q 035640 270 FSNN---------------RSILLDPKANKVVREFPI---LTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQ 331 (596)
Q Consensus 270 ~Gg~---------------~~e~yDp~t~~w~~~lp~---mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~ 331 (596)
+||. ++++||+.+++|+ .++. +|. +|. ..++++ .+++||++||..
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~~P~-~r~---~~~~~~------------~~~~iyv~GG~~ 261 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDPASGKWT-EVETTGAKPS-ARS---VFAHAV------------VGKYIIIFGGEV 261 (341)
T ss_pred EeccccccccCCccceecCceEEEEcCCCcEE-eccccCCCCC-Ccc---eeeeEE------------ECCEEEEECccc
Confidence 9862 4789999999997 5654 342 453 222332 489999999963
Q ss_pred CCccccccccccccCCCCceEEEEeeCCCCceEee------cCCCCccccceEEeC-CCeEEEEcCCCCCCCCCCCCCCC
Q 035640 332 WDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE------RMPSPRVMGDMVILP-TEDILLLNGAKTGTSGWNDAEDP 404 (596)
Q Consensus 332 ~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~------~M~~~R~~~~avvLp-dG~V~vvGG~~~g~~g~~~~~~~ 404 (596)
...-... ......++.+++||+. +++|+.. +||.+|..++++.+. +++|||+||.... .+.
T Consensus 262 ~~~~~~~---~~~~~~~n~v~~~d~~--~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~-------~~~ 329 (341)
T PLN02153 262 WPDLKGH---LGPGTLSNEGYALDTE--TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT-------NER 329 (341)
T ss_pred CCccccc---cccccccccEEEEEcC--ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC-------Ccc
Confidence 1100000 0001124678899987 8999864 455555433333333 4589999998632 233
Q ss_pred CcccEEEcCC
Q 035640 405 NLVPALYTPR 414 (596)
Q Consensus 405 ~~s~e~YDP~ 414 (596)
+..+.+|+..
T Consensus 330 ~~~~~~~~~~ 339 (341)
T PLN02153 330 TDDLYFYAVN 339 (341)
T ss_pred ccceEEEecc
Confidence 4467777654
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.93 E-value=6.2e-24 Score=227.97 Aligned_cols=251 Identities=16% Similarity=0.159 Sum_probs=172.0
Q ss_pred EEEEeCC--CCCEEeCcCCC-ccccccCeecCCCcEEEEcCCCC--------CCCeEEEEeCCCCCceeecCcCCCCccc
Q 035640 123 SVLFDFE--TSELTALKLQT-DTWCSSGGLTADGDLVSTGGFGG--------GANTVRYLSTCDGCDWREYPTALADPRW 191 (596)
Q Consensus 123 ~~~yDp~--t~~w~~l~~~~-~~fc~~~~~l~dG~ilv~GG~~~--------g~~~v~~fdP~~t~~W~~~~~~M~~~R~ 191 (596)
...||+. +++|+.++.++ ..++...++..+++|||+||... ..+++++|||. +++|+.++..++..|.
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~-~n~W~~~~~~~p~~~~ 130 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK-TNSWQKLDTRSPVGLA 130 (376)
T ss_pred EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC-CCEEEeCCCCCCCccc
Confidence 4567775 58999998765 35666666777999999999753 13679999999 9999998743466777
Q ss_pred ccEEEEccCCcEEEEcCCCC--------------------------------------CcEEEe-CCCCCCCCCcccccC
Q 035640 192 YSTQVTLPDGGFIVVGGRGA--------------------------------------FSYEYI-PPEGQSNKSPVFFPL 232 (596)
Q Consensus 192 y~s~~~L~dG~VyViGG~~~--------------------------------------~~~E~y-P~~~~w~~~~~~~p~ 232 (596)
.++++++.|++|||+||.+. ..+++| |.+++|.... .+|.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~-~~p~ 209 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG-ESPF 209 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC-cCCC
Confidence 77777745999999999642 357899 9999996311 1221
Q ss_pred cccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecce------e----EEecCCCCeEEEeeccccCCCCCC--C
Q 035640 233 LKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNR------S----ILLDPKANKVVREFPILTGGSRNY--P 300 (596)
Q Consensus 233 l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~------~----e~yDp~t~~w~~~lp~mp~~~R~~--p 300 (596)
. . ...++++..+++||++||.. . ..||+++++|. .+++||. +|.. +
T Consensus 210 ~--~------------------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~-~~~~~~~ 267 (376)
T PRK14131 210 L--G------------------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPP-APGGSSQ 267 (376)
T ss_pred C--C------------------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCC-CCcCCcC
Confidence 1 0 12356677899999999842 2 24588999997 7999984 4421 1
Q ss_pred C--Cce-EEeccccccccccccCCCEEEEEcCccCCcccccc-cccc-----ccCCCCceEEEEeeCCCCceEee-cCCC
Q 035640 301 A--SAM-SVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSE-TKKQ-----FFPALQDCGRIDITKPNAVWKKE-RMPS 370 (596)
Q Consensus 301 ~--~g~-av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~-~~~~-----~~~a~~s~~~id~~~~~~~W~~~-~M~~ 370 (596)
. .+. +++ .+++||++||.+... .... .++. ......++|+||+. +++|+.. +||.
T Consensus 268 ~~~~~~~a~~------------~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~ 332 (376)
T PRK14131 268 EGVAGAFAGY------------SNGVLLVAGGANFPG-ARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGELPQ 332 (376)
T ss_pred CccceEecee------------ECCEEEEeeccCCCC-ChhhhhcCCcccccCCcceeehheEEec--CCcccccCcCCC
Confidence 1 111 222 489999999975210 0000 0000 00112357889987 7999998 9999
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEE
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKE 423 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~ 423 (596)
+|.++. ++..+|+|||+||...+ .+.+.++++|+|+.+ .++.
T Consensus 333 ~r~~~~-av~~~~~iyv~GG~~~~-------~~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 333 GLAYGV-SVSWNNGVLLIGGETAG-------GKAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred CccceE-EEEeCCEEEEEcCCCCC-------CcEeeeEEEEEEcCC---EEEE
Confidence 999886 55669999999997531 123557899999987 6654
No 18
>PLN02193 nitrile-specifier protein
Probab=99.92 E-value=2.9e-23 Score=228.86 Aligned_cols=274 Identities=14% Similarity=0.130 Sum_probs=187.0
Q ss_pred EEEeCCC----CCEEeCcCC---CccccccCeecCCCcEEEEcCCCCC----CCeEEEEeCCCCCceeecCc--CCCC-c
Q 035640 124 VLFDFET----SELTALKLQ---TDTWCSSGGLTADGDLVSTGGFGGG----ANTVRYLSTCDGCDWREYPT--ALAD-P 189 (596)
Q Consensus 124 ~~yDp~t----~~w~~l~~~---~~~fc~~~~~l~dG~ilv~GG~~~g----~~~v~~fdP~~t~~W~~~~~--~M~~-~ 189 (596)
..+||.+ ++|..+..+ +..++...++..+++||++||.... .+.+++||+. +++|...+. +++. .
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~-~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLE-TRTWSISPATGDVPHLS 218 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECC-CCEEEeCCCCCCCCCCc
Confidence 3447766 899988763 4567777777789999999997421 2569999999 999998753 1333 2
Q ss_pred ccccEEEEccCCcEEEEcCCCC----CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCC
Q 035640 190 RWYSTQVTLPDGGFIVVGGRGA----FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPD 264 (596)
Q Consensus 190 R~y~s~~~L~dG~VyViGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~d 264 (596)
|..++++++ +++|||+||.+. ..+++| |.+++|.. ..++. .. +...+-+..++.+
T Consensus 219 ~~~~~~v~~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~---l~~~~-~~---------------P~~R~~h~~~~~~ 278 (470)
T PLN02193 219 CLGVRMVSI-GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL---LTPVE-EG---------------PTPRSFHSMAADE 278 (470)
T ss_pred ccceEEEEE-CCEEEEECCCCCCCCCccEEEEECCCCEEEE---cCcCC-CC---------------CCCccceEEEEEC
Confidence 446667777 899999999764 457888 99998853 11210 00 0011335666789
Q ss_pred CcEEEEecc-------eeEEecCCCCeEEEeecc---ccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCc
Q 035640 265 GNLFIFSNN-------RSILLDPKANKVVREFPI---LTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDS 334 (596)
Q Consensus 265 G~Ifv~Gg~-------~~e~yDp~t~~w~~~lp~---mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~ 334 (596)
++||++||. +.++||+.+++|. .+++ +| ..|. ...+++ .+++||++||.+ +.
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~-~~R~---~~~~~~------------~~gkiyviGG~~-g~ 340 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSF-SIRG---GAGLEV------------VQGKVWVVYGFN-GC 340 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCC-CCCC---CcEEEE------------ECCcEEEEECCC-CC
Confidence 999999995 3689999999997 5654 22 1343 222332 489999999965 21
Q ss_pred cccccccccccCCCCceEEEEeeCCCCceEee-cC---CCCccccceEEeCCCeEEEEcCCCCCCC-CCCCCCCCCcccE
Q 035640 335 FYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RM---PSPRVMGDMVILPTEDILLLNGAKTGTS-GWNDAEDPNLVPA 409 (596)
Q Consensus 335 ~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M---~~~R~~~~avvLpdG~V~vvGG~~~g~~-g~~~~~~~~~s~e 409 (596)
.++.+++||+. +++|+.. +| |.+|..++++ ..+++|||+||...... ..........+++
T Consensus 341 ------------~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 341 ------------EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred ------------ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEE
Confidence 24778999997 8999987 54 8899998755 55999999999752100 0000011223689
Q ss_pred EEcCCCCCCCceEEecCC------CcccccceEE--EEcCCCcEEEecCCCCC
Q 035640 410 LYTPRGPSRQRFKELAAG------TIPRMYHSSS--VLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 410 ~YDP~t~~g~~Wt~~a~~------~~~R~yhs~a--~LlpDG~Vlv~GG~~~~ 454 (596)
+|||.++ +|+.+..+ +.+|..|+.+ .+..+.++++.||....
T Consensus 406 ~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 406 ALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred EEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 9999999 99988754 5778888654 33223349999997543
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=6.7e-24 Score=237.78 Aligned_cols=254 Identities=15% Similarity=0.137 Sum_probs=186.5
Q ss_pred cCCCCCceEeccCCCcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEE
Q 035640 55 ETGYNGKWELVSENSGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELT 134 (596)
Q Consensus 55 ~~~~~g~W~~v~~~~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~ 134 (596)
+.+...+|..+... +....|.++. .++++|++||.+... . .......||+.+++|+
T Consensus 269 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~lyv~GG~~~~~----------~------------~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 269 NYSPLSEINTIIDI-HYVYCFGSVV-LNNVIYFIGGMNKNN----------L------------SVNSVVSYDTKTKSWN 324 (534)
T ss_pred cchhhhhcccccCc-cccccceEEE-ECCEEEEECCCcCCC----------C------------eeccEEEEeCCCCeee
Confidence 45567788876432 2223334554 699999999864210 0 0124788999999999
Q ss_pred eCcCCCccccccCeecCCCcEEEEcCCCC--CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCCC
Q 035640 135 ALKLQTDTWCSSGGLTADGDLVSTGGFGG--GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGAF 212 (596)
Q Consensus 135 ~l~~~~~~fc~~~~~l~dG~ilv~GG~~~--g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~ 212 (596)
.++.+...++..+++..+|+||++||... ..+++++|||. +++|+..++ |+.+|..++++++ +|+|||+||....
T Consensus 325 ~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-lp~~r~~~~~~~~-~~~iYv~GG~~~~ 401 (534)
T PHA03098 325 KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG-ESKWREEPP-LIFPRYNPCVVNV-NNLIYVIGGISKN 401 (534)
T ss_pred ECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCC-CCceeeCCC-cCcCCccceEEEE-CCEEEEECCcCCC
Confidence 99988777776677778999999999863 25789999999 999999975 9999999988887 8999999995321
Q ss_pred cEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecCCCCeEEEeeccc
Q 035640 213 SYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPIL 292 (596)
Q Consensus 213 ~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~m 292 (596)
. ..+ +++++||+.+++|. .+++|
T Consensus 402 ~-----------------~~~---------------------------------------~~v~~yd~~t~~W~-~~~~~ 424 (534)
T PHA03098 402 D-----------------ELL---------------------------------------KTVECFSLNTNKWS-KGSPL 424 (534)
T ss_pred C-----------------ccc---------------------------------------ceEEEEeCCCCeee-ecCCC
Confidence 0 000 13678999999997 78888
Q ss_pred cCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCC
Q 035640 293 TGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSP 371 (596)
Q Consensus 293 p~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~ 371 (596)
|. +|.. ++++. .+++||++||...... ....+.+++||+. +++|+.. +|+.+
T Consensus 425 p~-~r~~---~~~~~------------~~~~iyv~GG~~~~~~---------~~~~~~v~~yd~~--~~~W~~~~~~~~~ 477 (534)
T PHA03098 425 PI-SHYG---GCAIY------------HDGKIYVIGGISYIDN---------IKVYNIVESYNPV--TNKWTELSSLNFP 477 (534)
T ss_pred Cc-cccC---ceEEE------------ECCEEEEECCccCCCC---------CcccceEEEecCC--CCceeeCCCCCcc
Confidence 84 5532 22332 4899999999752110 0124568999988 8999999 99999
Q ss_pred ccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCccc
Q 035640 372 RVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPR 431 (596)
Q Consensus 372 R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R 431 (596)
|..+++++ .+|+|||+||.... ....++|+|||+++ +|+.+..++.-.
T Consensus 478 r~~~~~~~-~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~---~W~~~~~~p~~~ 525 (534)
T PHA03098 478 RINASLCI-FNNKIYVVGGDKYE--------YYINEIEVYDDKTN---TWTLFCKFPKVI 525 (534)
T ss_pred cccceEEE-ECCEEEEEcCCcCC--------cccceeEEEeCCCC---EEEecCCCcccc
Confidence 99987554 59999999998621 11347899999999 999887755433
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.92 E-value=1.7e-23 Score=219.97 Aligned_cols=268 Identities=14% Similarity=0.131 Sum_probs=177.7
Q ss_pred cccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEE-eCCCC-CEEeCcCCCccccccC
Q 035640 70 GVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLF-DFETS-ELTALKLQTDTWCSSG 147 (596)
Q Consensus 70 ~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~y-Dp~t~-~w~~l~~~~~~fc~~~ 147 (596)
++.++-.+++ ++++|++||.+. +. ..+.++| . ..+.....+| |+..+ +|+.+..+...++.++
T Consensus 3 ~~~g~~~~~~--~~~l~v~GG~~~-~~-~~~~~~g-~----------~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~ 67 (323)
T TIGR03548 3 GVAGCYAGII--GDYILVAGGCNF-PE-DPLAEGG-K----------KKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGA 67 (323)
T ss_pred ceeeEeeeEE--CCEEEEeeccCC-CC-CchhhCC-c----------EEeeeeeEEEecCCCceeEEEcccCCccccceE
Confidence 4566666676 889999999753 21 1122222 1 0112233344 44433 7999988877776566
Q ss_pred eecCCCcEEEEcCCCC--CCCeEEEEeCCCCCce----eecCcCCCCcccccEEEEccCCcEEEEcCCCC----CcEEEe
Q 035640 148 GLTADGDLVSTGGFGG--GANTVRYLSTCDGCDW----REYPTALADPRWYSTQVTLPDGGFIVVGGRGA----FSYEYI 217 (596)
Q Consensus 148 ~~l~dG~ilv~GG~~~--g~~~v~~fdP~~t~~W----~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~----~~~E~y 217 (596)
++..+++||++||... ..+++++||+. +++| ..+++ |+.+|..++++++ +++|||+||... ..+++|
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~-~~~w~~~~~~~~~-lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~y 144 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLD-ESKEELICETIGN-LPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLF 144 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEc-CCceeeeeeEcCC-CCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEE
Confidence 6667999999999764 25789999998 7887 67765 9999998988888 899999999632 468899
Q ss_pred -CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc------eeEEecCCCCeEEEeec
Q 035640 218 -PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN------RSILLDPKANKVVREFP 290 (596)
Q Consensus 218 -P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~------~~e~yDp~t~~w~~~lp 290 (596)
|++++|.. ..++....+ ..++.+..+++||++||. +.++||+.+++|. .++
T Consensus 145 d~~~~~W~~---~~~~p~~~r------------------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~ 202 (323)
T TIGR03548 145 NLETQEWFE---LPDFPGEPR------------------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVA 202 (323)
T ss_pred cCCCCCeeE---CCCCCCCCC------------------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECC
Confidence 99999963 112221111 224556789999999995 3689999999997 688
Q ss_pred cccCC--CCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccc-----c--------------c-cccCCC
Q 035640 291 ILTGG--SRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSET-----K--------------K-QFFPAL 348 (596)
Q Consensus 291 ~mp~~--~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~-----~--------------~-~~~~a~ 348 (596)
+|+.. ++... ..+++. ..+++||++||.+...+.+... . . ....-.
T Consensus 203 ~~~~~~~p~~~~-~~~~~~-----------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 203 DPTTDSEPISLL-GAASIK-----------INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred CCCCCCCceecc-ceeEEE-----------ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 77421 22211 122221 1478999999976211000000 0 0 000013
Q ss_pred CceEEEEeeCCCCceEee-cCC-CCccccceEEeCCCeEEEEcCCC
Q 035640 349 QDCGRIDITKPNAVWKKE-RMP-SPRVMGDMVILPTEDILLLNGAK 392 (596)
Q Consensus 349 ~s~~~id~~~~~~~W~~~-~M~-~~R~~~~avvLpdG~V~vvGG~~ 392 (596)
+++++||+. +++|+.. +|+ .+|..+++ +..+++||++||..
T Consensus 271 ~~v~~yd~~--~~~W~~~~~~p~~~r~~~~~-~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 271 RKILIYNVR--TGKWKSIGNSPFFARCGAAL-LLTGNNIFSINGEL 313 (323)
T ss_pred ceEEEEECC--CCeeeEcccccccccCchhe-EEECCEEEEEeccc
Confidence 679999998 8999998 787 58888864 55699999999974
No 21
>PLN02193 nitrile-specifier protein
Probab=99.91 E-value=1.2e-22 Score=223.91 Aligned_cols=263 Identities=12% Similarity=0.095 Sum_probs=183.7
Q ss_pred cCCCcEEEEcCCCC-CCCeE--EEEeCCC---CCceeecCc--CCCCcccccEEEEccCCcEEEEcCCCC------CcEE
Q 035640 150 TADGDLVSTGGFGG-GANTV--RYLSTCD---GCDWREYPT--ALADPRWYSTQVTLPDGGFIVVGGRGA------FSYE 215 (596)
Q Consensus 150 l~dG~ilv~GG~~~-g~~~v--~~fdP~~---t~~W~~~~~--~M~~~R~y~s~~~L~dG~VyViGG~~~------~~~E 215 (596)
+.+++|+.++|... .+.++ ..++|.. .++|..+.. +++.+|..|+++++ +++|||+||... ..++
T Consensus 118 ~~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 118 LQGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred EcCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCeeCcEE
Confidence 45889999999753 23444 4457751 279998764 26889999999988 899999999742 2477
Q ss_pred Ee-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc-------eeEEecCCCCeEEE
Q 035640 216 YI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN-------RSILLDPKANKVVR 287 (596)
Q Consensus 216 ~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~-------~~e~yDp~t~~w~~ 287 (596)
+| +.+++|.. ++..... . .....-++.++.+++||++||. ++++||+.+++|.
T Consensus 197 ~yD~~~~~W~~----~~~~g~~--P------------~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~- 257 (470)
T PLN02193 197 VFDLETRTWSI----SPATGDV--P------------HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK- 257 (470)
T ss_pred EEECCCCEEEe----CCCCCCC--C------------CCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE-
Confidence 88 99988852 1111000 0 0001234567789999999994 5789999999997
Q ss_pred eeccccC--CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEe
Q 035640 288 EFPILTG--GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKK 365 (596)
Q Consensus 288 ~lp~mp~--~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~ 365 (596)
.+++|.. .+|.+ .+++. .+++||++||.+. . ..++.+++||+. +++|+.
T Consensus 258 ~l~~~~~~P~~R~~---h~~~~------------~~~~iYv~GG~~~-~-----------~~~~~~~~yd~~--t~~W~~ 308 (470)
T PLN02193 258 LLTPVEEGPTPRSF---HSMAA------------DEENVYVFGGVSA-T-----------ARLKTLDSYNIV--DKKWFH 308 (470)
T ss_pred EcCcCCCCCCCccc---eEEEE------------ECCEEEEECCCCC-C-----------CCcceEEEEECC--CCEEEe
Confidence 6887721 24542 22322 4899999999752 1 135678899987 899998
Q ss_pred e-c---CCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCC---CcccccceEEE
Q 035640 366 E-R---MPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAG---TIPRMYHSSSV 438 (596)
Q Consensus 366 ~-~---M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~---~~~R~yhs~a~ 438 (596)
. + |+.+|..+.+ ++.+|+|||+||.+ +. ....+++|||+++ +|+.+.++ +.+|..|++++
T Consensus 309 ~~~~~~~~~~R~~~~~-~~~~gkiyviGG~~-g~--------~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~ 375 (470)
T PLN02193 309 CSTPGDSFSIRGGAGL-EVVQGKVWVVYGFN-GC--------EVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAA 375 (470)
T ss_pred CCCCCCCCCCCCCcEE-EEECCcEEEEECCC-CC--------ccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEE
Confidence 6 3 7788998865 45599999999974 21 1346899999999 99998765 88999999988
Q ss_pred EcCCCcEEEecCCCCCcccc-CCCCCCcceEEEEcCCCC
Q 035640 439 LLPDGTVLVAGSNTHNGYIL-DAKYPTELRVEKFSPPYL 476 (596)
Q Consensus 439 LlpDG~Vlv~GG~~~~~~~~-~~~~p~~~~vE~y~Ppyl 476 (596)
+ +++|||.||........ ...--...++++|+|...
T Consensus 376 ~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 376 V--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred E--CCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 8 99999999974321100 000000236899999875
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.69 E-value=1.6e-15 Score=148.53 Aligned_cols=262 Identities=16% Similarity=0.197 Sum_probs=174.7
Q ss_pred ceEeccCCCcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEEeCcCC-
Q 035640 61 KWELVSENSGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKLQ- 139 (596)
Q Consensus 61 ~W~~v~~~~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~- 139 (596)
.|..-...-+..--|+++- -..+||-+|+.-.|.. .++. + .-.+-.+|..+-+|+.+++.
T Consensus 3 ~WTVHLeGGPrRVNHAava-VG~riYSFGGYCsGed-------------y~~~----~-piDVH~lNa~~~RWtk~pp~~ 63 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVA-VGSRIYSFGGYCSGED-------------YDAK----D-PIDVHVLNAENYRWTKMPPGI 63 (392)
T ss_pred eEEEEecCCcccccceeee-ecceEEecCCcccccc-------------cccC----C-cceeEEeeccceeEEecCccc
Confidence 5765443333334477775 6889999998753321 1111 1 22467889999999988752
Q ss_pred ------------CccccccCeecCCCcEEEEcCCCC--C-CCeEEEEeCCCCCceeecC--cCCCCcccccEEEEccCCc
Q 035640 140 ------------TDTWCSSGGLTADGDLVSTGGFGG--G-ANTVRYLSTCDGCDWREYP--TALADPRWYSTQVTLPDGG 202 (596)
Q Consensus 140 ------------~~~fc~~~~~l~dG~ilv~GG~~~--g-~~~v~~fdP~~t~~W~~~~--~~M~~~R~y~s~~~L~dG~ 202 (596)
+-++....++..++++|+-||.++ + -+....|||. +++|.+.. .-++-.|-.|++|++ ++.
T Consensus 64 ~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~-t~~W~~p~v~G~vPgaRDGHsAcV~-gn~ 141 (392)
T KOG4693|consen 64 TKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE-TNVWKKPEVEGFVPGARDGHSACVW-GNQ 141 (392)
T ss_pred ccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc-cccccccceeeecCCccCCceeeEE-CcE
Confidence 124566667788999999999876 3 3677899999 99997642 237788999999999 889
Q ss_pred EEEEcCCCC----CcEEE--e-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecce-
Q 035640 203 FIVVGGRGA----FSYEY--I-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNR- 274 (596)
Q Consensus 203 VyViGG~~~----~~~E~--y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~- 274 (596)
+||.||... .+-+. + -.+-+|. .+ .|. ....+||+ | |...+.++.+|+|||+.
T Consensus 142 MyiFGGye~~a~~FS~d~h~ld~~TmtWr----~~----~Tk------g~PprwRD----F-H~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 142 MYIFGGYEEDAQRFSQDTHVLDFATMTWR----EM----HTK------GDPPRWRD----F-HTASVIDGMMYIFGGRSD 202 (392)
T ss_pred EEEecChHHHHHhhhccceeEeccceeee----eh----hcc------CCCchhhh----h-hhhhhccceEEEeccccc
Confidence 999999743 12222 2 3344453 11 111 01123432 2 34567799999999963
Q ss_pred ---------------eEEecCCCCeEEEeecc---ccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccc
Q 035640 275 ---------------SILLDPKANKVVREFPI---LTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFY 336 (596)
Q Consensus 275 ---------------~e~yDp~t~~w~~~lp~---mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 336 (596)
...+|.+|..|.+. |+ .|++.| +.++-. +++++|++||.+ +.-
T Consensus 203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~-p~~~~~P~GRR----SHS~fv------------Yng~~Y~FGGYn-g~l- 263 (392)
T KOG4693|consen 203 ESGPFHSIHEQYCDTIMALDLATGAWTRT-PENTMKPGGRR----SHSTFV------------YNGKMYMFGGYN-GTL- 263 (392)
T ss_pred cCCCccchhhhhcceeEEEeccccccccC-CCCCcCCCccc----ccceEE------------EcceEEEecccc-hhh-
Confidence 34679999999853 33 354444 344433 699999999986 221
Q ss_pred cccccccccCCCCceEEEEeeCCCCceEee----cCCCCccccceEEeCCCeEEEEcCCC
Q 035640 337 FSETKKQFFPALQDCGRIDITKPNAVWKKE----RMPSPRVMGDMVILPTEDILLLNGAK 392 (596)
Q Consensus 337 ~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~avvLpdG~V~vvGG~~ 392 (596)
....+...++||. +..|..+ .-|.+|..++++++ ++|||++||..
T Consensus 264 --------n~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 264 --------NVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred --------hhhhcceeecccc--cchheeeeccCCCCCcccceeEEEE-CCEEEEecCCC
Confidence 1234667788887 7889875 56788888886655 99999999975
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.68 E-value=4.6e-15 Score=145.32 Aligned_cols=252 Identities=17% Similarity=0.244 Sum_probs=166.5
Q ss_pred eecCCCcEEEEcCCCCC-------CCeEEEEeCCCCCceeecCcC------------CCCcccccEEEEccCCcEEEEcC
Q 035640 148 GLTADGDLVSTGGFGGG-------ANTVRYLSTCDGCDWREYPTA------------LADPRWYSTQVTLPDGGFIVVGG 208 (596)
Q Consensus 148 ~~l~dG~ilv~GG~~~g-------~~~v~~fdP~~t~~W~~~~~~------------M~~~R~y~s~~~L~dG~VyViGG 208 (596)
++-...+||-+||+-.| --.|.+++-. +-.|+.++.. .+..|..|+++.. ++++||-||
T Consensus 19 avaVG~riYSFGGYCsGedy~~~~piDVH~lNa~-~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-~d~~yvWGG 96 (392)
T KOG4693|consen 19 AVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE-NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-QDKAYVWGG 96 (392)
T ss_pred eeeecceEEecCCcccccccccCCcceeEEeecc-ceeEEecCcccccccccCCCCccchhhcCceEEEE-cceEEEEcC
Confidence 34447799999997533 1257788887 8889987641 2456888888777 899999999
Q ss_pred CCC-----Cc-EEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc---------
Q 035640 209 RGA-----FS-YEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN--------- 273 (596)
Q Consensus 209 ~~~-----~~-~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~--------- 273 (596)
++. +. +|+-|++++|.+ ..+.-++...+| -|..++.+..+|+|||.
T Consensus 97 RND~egaCN~Ly~fDp~t~~W~~-p~v~G~vPgaRD------------------GHsAcV~gn~MyiFGGye~~a~~FS~ 157 (392)
T KOG4693|consen 97 RNDDEGACNLLYEFDPETNVWKK-PEVEGFVPGARD------------------GHSACVWGNQMYIFGGYEEDAQRFSQ 157 (392)
T ss_pred ccCcccccceeeeeccccccccc-cceeeecCCccC------------------CceeeEECcEEEEecChHHHHHhhhc
Confidence 975 22 343399999963 122222222221 25567789999999994
Q ss_pred eeEEecCCCCeEEEeeccc--cCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCce
Q 035640 274 RSILLDPKANKVVREFPIL--TGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDC 351 (596)
Q Consensus 274 ~~e~yDp~t~~w~~~lp~m--p~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 351 (596)
+...+|..|-+|. .+..- |..-|.+ .++++ +++..||+||..+...-.. .+...-.+..
T Consensus 158 d~h~ld~~TmtWr-~~~Tkg~PprwRDF---H~a~~------------~~~~MYiFGGR~D~~gpfH---s~~e~Yc~~i 218 (392)
T KOG4693|consen 158 DTHVLDFATMTWR-EMHTKGDPPRWRDF---HTASV------------IDGMMYIFGGRSDESGPFH---SIHEQYCDTI 218 (392)
T ss_pred cceeEeccceeee-ehhccCCCchhhhh---hhhhh------------ccceEEEeccccccCCCcc---chhhhhccee
Confidence 3567899999995 55332 1112333 44554 4899999999753210000 0001112333
Q ss_pred EEEEeeCCCCceEee---c-CCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEec--
Q 035640 352 GRIDITKPNAVWKKE---R-MPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELA-- 425 (596)
Q Consensus 352 ~~id~~~~~~~W~~~---~-M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a-- 425 (596)
..+|.. +..|... + .|..|..|++ -+-||++|++||.. |.- +.-.....+|||.+. .|+.+.
T Consensus 219 ~~ld~~--T~aW~r~p~~~~~P~GRRSHS~-fvYng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~ 286 (392)
T KOG4693|consen 219 MALDLA--TGAWTRTPENTMKPGGRRSHST-FVYNGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSVISVR 286 (392)
T ss_pred EEEecc--ccccccCCCCCcCCCcccccce-EEEcceEEEecccc-hhh-----hhhhcceeecccccc---hheeeecc
Confidence 345655 7889864 3 5788999974 55699999999986 221 111225689999999 998764
Q ss_pred -CCCcccccceEEEEcCCCcEEEecCCCC
Q 035640 426 -AGTIPRMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 426 -~~~~~R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
.-+.+|..|++.+. .+|||++||...
T Consensus 287 Gk~P~aRRRqC~~v~--g~kv~LFGGTsP 313 (392)
T KOG4693|consen 287 GKYPSARRRQCSVVS--GGKVYLFGGTSP 313 (392)
T ss_pred CCCCCcccceeEEEE--CCEEEEecCCCC
Confidence 46888888988877 999999999754
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.35 E-value=7.7e-11 Score=130.52 Aligned_cols=244 Identities=16% Similarity=0.210 Sum_probs=168.0
Q ss_pred ccccCeecCCCcEEEEcCCCCC--CC--eEEEEeCCCCCceeecCc--CCCCcccccEEEEccCCcEEEEcCCCC-----
Q 035640 143 WCSSGGLTADGDLVSTGGFGGG--AN--TVRYLSTCDGCDWREYPT--ALADPRWYSTQVTLPDGGFIVVGGRGA----- 211 (596)
Q Consensus 143 fc~~~~~l~dG~ilv~GG~~~g--~~--~v~~fdP~~t~~W~~~~~--~M~~~R~y~s~~~L~dG~VyViGG~~~----- 211 (596)
+-...+.+.+.+++|+||...+ .. ++.+||-. +..|..... .-+.+|..++.+++ +.++|++||.+.
T Consensus 61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~-~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~ 138 (482)
T KOG0379|consen 61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE-SQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNL 138 (482)
T ss_pred hhccceeEECCEEEEECCCCCCCccccceeEEeecC-CcccccccccCCCCCcccceeEEEE-CCeEEEEccccCCCCCh
Confidence 4444555569999999997632 22 59999988 888987642 35578988988888 789999999874
Q ss_pred CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc--------eeEEecCCC
Q 035640 212 FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN--------RSILLDPKA 282 (596)
Q Consensus 212 ~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~--------~~e~yDp~t 282 (596)
..+..| +.+.+|.- +. .+.+ . +-...-|.+++.+.+||||||. +.++||..+
T Consensus 139 ~~l~~~d~~t~~W~~----l~---~~~~-----~-------P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSL----LS---PTGD-----P-------PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred hheEeccCCCCcEEE----ec---CcCC-----C-------CCCcccceEEEECCEEEEECCccCcccceeeeeeecccc
Confidence 234456 77887741 11 0100 0 1122346778888999999983 578999999
Q ss_pred CeEEEeeccccC--CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCC
Q 035640 283 NKVVREFPILTG--GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPN 360 (596)
Q Consensus 283 ~~w~~~lp~mp~--~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~ 360 (596)
.+|. .+..... .+|. ..+++. .+.+++++||...+. ..++++..+|+. +
T Consensus 200 ~~W~-~~~~~g~~P~pR~---gH~~~~------------~~~~~~v~gG~~~~~-----------~~l~D~~~ldl~--~ 250 (482)
T KOG0379|consen 200 STWS-ELDTQGEAPSPRY---GHAMVV------------VGNKLLVFGGGDDGD-----------VYLNDVHILDLS--T 250 (482)
T ss_pred ccce-ecccCCCCCCCCC---CceEEE------------ECCeEEEEeccccCC-----------ceecceEeeecc--c
Confidence 9997 4432111 1343 223332 589999999976222 247888999988 7
Q ss_pred CceEee----cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCC----Ccccc
Q 035640 361 AVWKKE----RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAG----TIPRM 432 (596)
Q Consensus 361 ~~W~~~----~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~----~~~R~ 432 (596)
-+|... .+|.+|..|..+ ....+++++||...+. ..++.....||.++. .|+.+... +.+|.
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~------~~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~ 320 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPK------QEPLGDLYGLDLETL---VWSKVESVGVVRPSPRL 320 (482)
T ss_pred ceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccc------ccccccccccccccc---ceeeeeccccccccccc
Confidence 899853 688999999866 6699999999986320 114556788899988 88766543 57888
Q ss_pred cceEEEEcCCCcEE
Q 035640 433 YHSSSVLLPDGTVL 446 (596)
Q Consensus 433 yhs~a~LlpDG~Vl 446 (596)
-|...+.-..++..
T Consensus 321 ~~~~~~~~~~~~~~ 334 (482)
T KOG0379|consen 321 GHAAELIDELGKDG 334 (482)
T ss_pred cccceeeccCCccc
Confidence 88877765555543
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.33 E-value=8e-11 Score=130.36 Aligned_cols=207 Identities=20% Similarity=0.234 Sum_probs=142.8
Q ss_pred CCCcccccEEEEccCCcEEEEcCCCCC----cEEEe---CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccce
Q 035640 186 LADPRWYSTQVTLPDGGFIVVGGRGAF----SYEYI---PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPF 258 (596)
Q Consensus 186 M~~~R~y~s~~~L~dG~VyViGG~~~~----~~E~y---P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~ 258 (596)
.+.+|+.|+++.. +.++||.||.... ..++| -....|... .. + |.. +..-|-+
T Consensus 57 ~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~-----~~--~-----g~~-------p~~r~g~ 116 (482)
T KOG0379|consen 57 GPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKP-----AA--T-----GDE-------PSPRYGH 116 (482)
T ss_pred CcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCcccccc-----cc--c-----CCC-------CCcccce
Confidence 6678999998888 8999999997531 11344 233344311 00 0 000 1122456
Q ss_pred EEEcCCCcEEEEecce--------eEEecCCCCeEEEeeccccC--CCCCCCCCceEEeccccccccccccCCCEEEEEc
Q 035640 259 VYLSPDGNLFIFSNNR--------SILLDPKANKVVREFPILTG--GSRNYPASAMSVLLPLKLRANNATATKAKVLVCG 328 (596)
Q Consensus 259 ~~~~~dG~Ifv~Gg~~--------~e~yDp~t~~w~~~lp~mp~--~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~G 328 (596)
..+..+.+||+|||+. ...||..+++|. .+.+... .+|. ..++++ .+.+|||+|
T Consensus 117 ~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~-~l~~~~~~P~~r~---~Hs~~~------------~g~~l~vfG 180 (482)
T KOG0379|consen 117 SLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWS-LLSPTGDPPPPRA---GHSATV------------VGTKLVVFG 180 (482)
T ss_pred eEEEECCeEEEEccccCCCCChhheEeccCCCCcEE-EecCcCCCCCCcc---cceEEE------------ECCEEEEEC
Confidence 6677889999999964 678999999997 4433211 1343 233433 479999999
Q ss_pred CccCCccccccccccccCCCCceEEEEeeCCCCceEee----cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCC
Q 035640 329 GAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE----RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDP 404 (596)
Q Consensus 329 G~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~ 404 (596)
|.+... ..++++.+||+. +.+|... +-|.||..|.+ ++.++++|++||...+ ...
T Consensus 181 G~~~~~-----------~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~-~~~~~~~~v~gG~~~~-------~~~ 239 (482)
T KOG0379|consen 181 GIGGTG-----------DSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAM-VVVGNKLLVFGGGDDG-------DVY 239 (482)
T ss_pred CccCcc-----------cceeeeeeeccc--cccceecccCCCCCCCCCCceE-EEECCeEEEEeccccC-------Cce
Confidence 976211 147889999988 7889874 67889999974 5569999999997622 222
Q ss_pred CcccEEEcCCCCCCCceEEe---cCCCcccccceEEEEcCCCcEEEecCCCCC
Q 035640 405 NLVPALYTPRGPSRQRFKEL---AAGTIPRMYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 405 ~~s~e~YDP~t~~g~~Wt~~---a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
+..+.++|-.+- +|..+ ...+.+|++|+.++. .-++++.||+...
T Consensus 240 l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 240 LNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred ecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 346789999998 99854 457899999999966 8888888887664
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.07 E-value=4e-09 Score=109.54 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=148.2
Q ss_pred CcEEEEcCCC-CC-----CCeEEEEeCCCCCceeecCc-CCCCcccccEEEEccCCcEEEEcCCCCCcEEEeCCCCCCCC
Q 035640 153 GDLVSTGGFG-GG-----ANTVRYLSTCDGCDWREYPT-ALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPEGQSNK 225 (596)
Q Consensus 153 G~ilv~GG~~-~g-----~~~v~~fdP~~t~~W~~~~~-~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~yP~~~~w~~ 225 (596)
..|+++||-. ++ .+....||.. +++|..+.. .-+.+|..|.+++.+.|.+++.||.-.. |...
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq~---- 148 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQE---- 148 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cchh----
Confidence 4888999943 23 3567889998 999998753 2567899999999998999999994210 1110
Q ss_pred CcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecCCCCeEEEeeccccC--CCCCCCCCc
Q 035640 226 SPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDPKANKVVREFPILTG--GSRNYPASA 303 (596)
Q Consensus 226 ~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~--~~R~~p~~g 303 (596)
.| |+. .+.|.||.++++|++ +.. ++ .+| +|
T Consensus 149 -----qF-----------------------~HY--------------kD~W~fd~~trkweq-l~~-~g~PS~R----SG 180 (521)
T KOG1230|consen 149 -----QF-----------------------HHY--------------KDLWLFDLKTRKWEQ-LEF-GGGPSPR----SG 180 (521)
T ss_pred -----hh-----------------------hhh--------------hheeeeeeccchhee-ecc-CCCCCCC----cc
Confidence 01 111 146789999999984 532 22 144 33
Q ss_pred eEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee--c--CCCCccccceEE
Q 035640 304 MSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE--R--MPSPRVMGDMVI 379 (596)
Q Consensus 304 ~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~--~--M~~~R~~~~avv 379 (596)
.- |+ .++.+|+++||..+ ... ...-.+.+.++|+. +=+|+.. + -|.+|+.++..+
T Consensus 181 HR-Mv----------awK~~lilFGGFhd-~nr-------~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~v 239 (521)
T KOG1230|consen 181 HR-MV----------AWKRQLILFGGFHD-SNR-------DYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSV 239 (521)
T ss_pred ce-eE----------EeeeeEEEEcceec-CCC-------ceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEe
Confidence 22 21 26999999999752 111 11236788999987 8899986 3 489999999999
Q ss_pred eCCCeEEEEcCCCCCCCCCCCCCC--CCcccEEEcCCCCCC--CceEEecCC---CcccccceEEEEcCCCcEEEecCCC
Q 035640 380 LPTEDILLLNGAKTGTSGWNDAED--PNLVPALYTPRGPSR--QRFKELAAG---TIPRMYHSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 380 LpdG~V~vvGG~~~g~~g~~~~~~--~~~s~e~YDP~t~~g--~~Wt~~a~~---~~~R~yhs~a~LlpDG~Vlv~GG~~ 452 (596)
.|+|.|+|-||+..-..- -+... ....+.+-+|+++.. -.|+.+.+. +.||...|+++- ++++-|.+||-.
T Consensus 240 tpqg~i~vyGGYsK~~~k-K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV~ 317 (521)
T KOG1230|consen 240 TPQGGIVVYGGYSKQRVK-KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGVC 317 (521)
T ss_pred cCCCcEEEEcchhHhhhh-hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEeccee
Confidence 999999999998531100 00000 122356678888422 257777664 789999988875 899999999953
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.99 E-value=1.7e-08 Score=106.96 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=162.4
Q ss_pred CEEeCcCC----CccccccCeecCCCcEEEEcCCCCC-CCeEEEEeCCCCCceeecC--cCCCCcccccEEEEccCCcEE
Q 035640 132 ELTALKLQ----TDTWCSSGGLTADGDLVSTGGFGGG-ANTVRYLSTCDGCDWREYP--TALADPRWYSTQVTLPDGGFI 204 (596)
Q Consensus 132 ~w~~l~~~----~~~fc~~~~~l~dG~ilv~GG~~~g-~~~v~~fdP~~t~~W~~~~--~~M~~~R~y~s~~~L~dG~Vy 204 (596)
+|+.+... ...+-..-++.....|+|+||-++| ......|+.. +++|..-+ .+.+.+-.-++.+.+ ..|||
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa-tnqWf~PavrGDiPpgcAA~Gfvcd-Gtril 95 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA-TNQWFAPAVRGDIPPGCAAFGFVCD-GTRIL 95 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc-cceeecchhcCCCCCchhhcceEec-CceEE
Confidence 56665422 2233333345557789999997776 4678899998 99997432 135544444555555 66999
Q ss_pred EEcCCCC---CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEecC
Q 035640 205 VVGGRGA---FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILLDP 280 (596)
Q Consensus 205 ViGG~~~---~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~yDp 280 (596)
++||... .+-|.| -....|. |..+.. ++ ..+|...-. ---|.|.+...|-|+|||-.-+.=||
T Consensus 96 vFGGMvEYGkYsNdLYELQasRWe--Wkrlkp--~~--p~nG~pPCP-------RlGHSFsl~gnKcYlFGGLaNdseDp 162 (830)
T KOG4152|consen 96 VFGGMVEYGKYSNDLYELQASRWE--WKRLKP--KT--PKNGPPPCP-------RLGHSFSLVGNKCYLFGGLANDSEDP 162 (830)
T ss_pred EEccEeeeccccchHHHhhhhhhh--HhhcCC--CC--CCCCCCCCC-------ccCceeEEeccEeEEeccccccccCc
Confidence 9999642 233444 3344453 222110 00 111211111 12356788889999999943332333
Q ss_pred CCC--------------------eEEEeec----cccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccc
Q 035640 281 KAN--------------------KVVREFP----ILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFY 336 (596)
Q Consensus 281 ~t~--------------------~w~~~lp----~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 336 (596)
+.| .|. +| .+| .+|. ++.+|++- +-+.-..|++|.||.. |.
T Consensus 163 knNvPrYLnDlY~leL~~Gsgvv~W~--ip~t~Gv~P-~pRE---SHTAViY~------eKDs~~skmvvyGGM~-G~-- 227 (830)
T KOG4152|consen 163 KNNVPRYLNDLYILELRPGSGVVAWD--IPITYGVLP-PPRE---SHTAVIYT------EKDSKKSKMVVYGGMS-GC-- 227 (830)
T ss_pred ccccchhhcceEEEEeccCCceEEEe--cccccCCCC-CCcc---cceeEEEE------eccCCcceEEEEcccc-cc--
Confidence 332 132 22 122 1453 66777652 2233478999999976 32
Q ss_pred cccccccccCCCCceEEEEeeCCCCceEee----cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCC---------C
Q 035640 337 FSETKKQFFPALQDCGRIDITKPNAVWKKE----RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAE---------D 403 (596)
Q Consensus 337 ~~~~~~~~~~a~~s~~~id~~~~~~~W~~~----~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~---------~ 403 (596)
.+.....+|+. +-.|... --|.||+.|++ ++..+|+||.||.-- ...++. .
T Consensus 228 ----------RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLHsa-~~IGnKMyvfGGWVP---l~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 228 ----------RLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLHSA-TTIGNKMYVFGGWVP---LVMDDVKVATHEKEWK 291 (830)
T ss_pred ----------cccceeEEecc--eeecccccccCCCCCCcccccc-eeecceeEEecceee---eeccccccccccceee
Confidence 36677778887 7789764 35678999975 456999999999621 000000 0
Q ss_pred CCcccEEEcCCCCCCCceEEec-------CCCcccccceEEEEcCCCcEEEecCCC
Q 035640 404 PNLVPALYTPRGPSRQRFKELA-------AGTIPRMYHSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 404 ~~~s~e~YDP~t~~g~~Wt~~a-------~~~~~R~yhs~a~LlpDG~Vlv~GG~~ 452 (596)
-..+.-|+|-++. +|+.+- ..+.+|..|+++.+ .-|+|+=-|.+
T Consensus 292 CTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRD 342 (830)
T KOG4152|consen 292 CTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRD 342 (830)
T ss_pred eccceeeeeecch---heeeeeeccccccccccccccceeEEe--ccEEEEEeccc
Confidence 1224578999999 998642 25667889988877 89999988765
No 28
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.96 E-value=1.1e-08 Score=102.64 Aligned_cols=135 Identities=21% Similarity=0.357 Sum_probs=89.4
Q ss_pred eEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEE
Q 035640 275 SILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRI 354 (596)
Q Consensus 275 ~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~i 354 (596)
+..||+.++++. .+... ...+|++.++|| +|++++.||...+ .+.+..|
T Consensus 48 s~~yD~~tn~~r-pl~v~-----td~FCSgg~~L~-----------dG~ll~tGG~~~G--------------~~~ir~~ 96 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQ-----TDTFCSGGAFLP-----------DGRLLQTGGDNDG--------------NKAIRIF 96 (243)
T ss_pred EEEEecCCCcEE-eccCC-----CCCcccCcCCCC-----------CCCEEEeCCCCcc--------------ccceEEE
Confidence 467999999985 55321 123366666664 8999999997532 2334446
Q ss_pred EeeC--CCCceEee--cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCC--CceEEecCC-
Q 035640 355 DITK--PNAVWKKE--RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSR--QRFKELAAG- 427 (596)
Q Consensus 355 d~~~--~~~~W~~~--~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g--~~Wt~~a~~- 427 (596)
++.. .+..|... .|..+|++.++++|+||+|+|+||... .+.|.|++..... ..|..+...
T Consensus 97 ~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~------------~t~E~~P~~~~~~~~~~~~~l~~~~ 164 (243)
T PF07250_consen 97 TPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN------------PTYEFWPPKGPGPGPVTLPFLSQTS 164 (243)
T ss_pred ecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC------------CcccccCCccCCCCceeeecchhhh
Confidence 6542 24579876 699999999999999999999999751 1347666543211 233333321
Q ss_pred -CcccccceEEEEcCCCcEEEecCCC
Q 035640 428 -TIPRMYHSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 428 -~~~R~yhs~a~LlpDG~Vlv~GG~~ 452 (596)
..+..+.=-..|||||+||+.+...
T Consensus 165 ~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 165 DTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCccccCceEEEcCCCCEEEEEcCC
Confidence 3344444456788999999998753
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.84 E-value=3.7e-07 Score=94.00 Aligned_cols=256 Identities=19% Similarity=0.222 Sum_probs=153.9
Q ss_pred CccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCC-CCceeecCcCCCCcccccEEEEccCCcEEEEcCCCC-------
Q 035640 140 TDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCD-GCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGA------- 211 (596)
Q Consensus 140 ~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~-t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~------- 211 (596)
+..+-.+...+....+||.=|.. | .+-...|... ...|++.++-.-.+|-.+.++++ +|++||.||...
T Consensus 34 Pvg~KnG~Ga~ig~~~YVGLGs~-G-~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~~~~~~ 110 (381)
T COG3055 34 PVGFKNGAGALIGDTVYVGLGSA-G-TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-GGKLYVFGGYGKSVSSSPQ 110 (381)
T ss_pred CccccccccceecceEEEEeccC-C-ccceehhhhcCCCCceEcccCCCcccccchheee-CCeEEEeeccccCCCCCce
Confidence 33344444444444677643422 1 2233344321 46899998634466877766666 999999999642
Q ss_pred --CcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCC-cEEEEecc--------------
Q 035640 212 --FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDG-NLFIFSNN-------------- 273 (596)
Q Consensus 212 --~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG-~Ifv~Gg~-------------- 273 (596)
.++-+| |.+++|.......|.. +--+....+++ +|+++||-
T Consensus 111 ~~nd~Y~y~p~~nsW~kl~t~sP~g---------------------l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~ 169 (381)
T COG3055 111 VFNDAYRYDPSTNSWHKLDTRSPTG---------------------LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGA 169 (381)
T ss_pred EeeeeEEecCCCChhheeccccccc---------------------cccceeEecCCceEEEEccccHHhhhhhHHhhhh
Confidence 123356 9999997433323321 11123344555 99999982
Q ss_pred ---------------------------eeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEE
Q 035640 274 ---------------------------RSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLV 326 (596)
Q Consensus 274 ---------------------------~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v 326 (596)
.+..|||.++.|. .+-..|. ++.||++++. -+++|.+
T Consensus 170 a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~-~~G~~pf----~~~aGsa~~~-----------~~n~~~l 233 (381)
T COG3055 170 AGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR-NLGENPF----YGNAGSAVVI-----------KGNKLTL 233 (381)
T ss_pred hcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhh-hcCcCcc----cCccCcceee-----------cCCeEEE
Confidence 1457999999995 5544443 4558887753 3677888
Q ss_pred EcCccCCccccccccccccCCCCceE--EEEeeCCCCceEee-cCCCCcccc-ce-----EEeCCCeEEEEcCCCCCC--
Q 035640 327 CGGAQWDSFYFSETKKQFFPALQDCG--RIDITKPNAVWKKE-RMPSPRVMG-DM-----VILPTEDILLLNGAKTGT-- 395 (596)
Q Consensus 327 ~GG~~~~~~~~~~~~~~~~~a~~s~~--~id~~~~~~~W~~~-~M~~~R~~~-~a-----vvLpdG~V~vvGG~~~g~-- 395 (596)
+-|.-. |.+++.+ +++.....-+|... +++.+-... .. ---.+|.++|.||+..--
T Consensus 234 InGEiK-------------pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~ 300 (381)
T COG3055 234 INGEIK-------------PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGAL 300 (381)
T ss_pred Ecceec-------------CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHH
Confidence 877431 3344443 56776556789987 666543221 11 113489999999985310
Q ss_pred ----CCCCCCCCCC-----cccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCCCc
Q 035640 396 ----SGWNDAEDPN-----LVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNG 455 (596)
Q Consensus 396 ----~g~~~~~~~~-----~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~~ 455 (596)
.|...+.+.+ ..+.++| .+ .|+.+..++.++.|.-+ +.-...||+.||+..++
T Consensus 301 ~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~GeLp~~l~YG~s--~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 301 KAYKNGKFYAHEGLSKSWNSEVYIFD--NG---SWKIVGELPQGLAYGVS--LSYNNKVLLIGGETSGG 362 (381)
T ss_pred HHHHhcccccccchhhhhhceEEEEc--CC---ceeeecccCCCccceEE--EecCCcEEEEccccCCC
Confidence 1111122211 1345556 77 99999999999988633 34488899999987653
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.83 E-value=7.1e-08 Score=100.46 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=112.9
Q ss_pred eEEEcC-CCcEEEEecc-----------eeEEecCCCCeEEEee-ccccCCCCCCCCCceEEeccccccccccccCCCEE
Q 035640 258 FVYLSP-DGNLFIFSNN-----------RSILLDPKANKVVREF-PILTGGSRNYPASAMSVLLPLKLRANNATATKAKV 324 (596)
Q Consensus 258 ~~~~~~-dG~Ifv~Gg~-----------~~e~yDp~t~~w~~~l-p~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI 324 (596)
.+++-| ...|++|||. +...||.+++.|.+.. |+-| .+|+ ++.+|..| .+.+
T Consensus 71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P-~pRs---shq~va~~-----------s~~l 135 (521)
T KOG1230|consen 71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAP-PPRS---SHQAVAVP-----------SNIL 135 (521)
T ss_pred ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCc-CCCc---cceeEEec-----------cCeE
Confidence 344444 3488889883 4568999999997433 3333 2564 44555543 5689
Q ss_pred EEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee---cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCC
Q 035640 325 LVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE---RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDA 401 (596)
Q Consensus 325 ~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~---~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~ 401 (596)
+++||--... +....-.......+|+. +.+|+.. .-|.+|+.|-+| +-..+++++||+......|
T Consensus 136 ~~fGGEfaSP------nq~qF~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMv-awK~~lilFGGFhd~nr~y--- 203 (521)
T KOG1230|consen 136 WLFGGEFASP------NQEQFHHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMV-AWKRQLILFGGFHDSNRDY--- 203 (521)
T ss_pred EEeccccCCc------chhhhhhhhheeeeeec--cchheeeccCCCCCCCccceeE-EeeeeEEEEcceecCCCce---
Confidence 9999943111 11122335567778887 8999986 578999999855 5699999999987432211
Q ss_pred CCCCcccEEEcCCCCCCCceEEecCC---CcccccceEEEEcCCCcEEEecCCC
Q 035640 402 EDPNLVPALYTPRGPSRQRFKELAAG---TIPRMYHSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 402 ~~~~~s~e~YDP~t~~g~~Wt~~a~~---~~~R~yhs~a~LlpDG~Vlv~GG~~ 452 (596)
.....+.+||-++= +|+.+.+. +.||..|..++ .|+|.|+|-||..
T Consensus 204 -~YyNDvy~FdLdty---kW~Klepsga~PtpRSGcq~~v-tpqg~i~vyGGYs 252 (521)
T KOG1230|consen 204 -IYYNDVYAFDLDTY---KWSKLEPSGAGPTPRSGCQFSV-TPQGGIVVYGGYS 252 (521)
T ss_pred -EEeeeeEEEeccce---eeeeccCCCCCCCCCCcceEEe-cCCCcEEEEcchh
Confidence 12336899999999 99987653 78999997766 5899999999964
No 31
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.75 E-value=1.4e-07 Score=100.23 Aligned_cols=218 Identities=18% Similarity=0.254 Sum_probs=136.1
Q ss_pred CCCCcccccEEEEccCCcEEEEcCCCCC---cEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEE
Q 035640 185 ALADPRWYSTQVTLPDGGFIVVGGRGAF---SYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVY 260 (596)
Q Consensus 185 ~M~~~R~y~s~~~L~dG~VyViGG~~~~---~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~ 260 (596)
+-+.+|..|-++++ .--|.|+||-+.. ....| ..+++|. +|-.+. |.. -..-.|.+
T Consensus 28 PvPrpRHGHRAVai-kELiviFGGGNEGiiDELHvYNTatnqWf-----~PavrG--DiP------------pgcAA~Gf 87 (830)
T KOG4152|consen 28 PVPRPRHGHRAVAI-KELIVIFGGGNEGIIDELHVYNTATNQWF-----APAVRG--DIP------------PGCAAFGF 87 (830)
T ss_pred CCCCccccchheee-eeeEEEecCCcccchhhhhhhccccceee-----cchhcC--CCC------------Cchhhcce
Confidence 36788999999988 5678888887653 34567 8888884 222211 110 01123456
Q ss_pred EcCCCcEEEEecc------eeEEecCCCCeEE-Eee-ccccC-CCCCCCCCceEEeccccccccccccCCCEEEEEcCcc
Q 035640 261 LSPDGNLFIFSNN------RSILLDPKANKVV-REF-PILTG-GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQ 331 (596)
Q Consensus 261 ~~~dG~Ifv~Gg~------~~e~yDp~t~~w~-~~l-p~mp~-~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~ 331 (596)
+....+||+|||- +-++|....-+|+ +.+ |..|. +.--.|+-|.+-.| +..|-|++||..
T Consensus 88 vcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl-----------~gnKcYlFGGLa 156 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSL-----------VGNKCYLFGGLA 156 (830)
T ss_pred EecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEE-----------eccEeEEecccc
Confidence 6667799999983 2355666655553 122 22221 11112334444332 479999999976
Q ss_pred CCccccccccccccC-CCCceEEEEeeCCC--CceEee----cCCCCccccceEEeC-----CCeEEEEcCCCCCCCCCC
Q 035640 332 WDSFYFSETKKQFFP-ALQDCGRIDITKPN--AVWKKE----RMPSPRVMGDMVILP-----TEDILLLNGAKTGTSGWN 399 (596)
Q Consensus 332 ~~~~~~~~~~~~~~~-a~~s~~~id~~~~~--~~W~~~----~M~~~R~~~~avvLp-----dG~V~vvGG~~~g~~g~~ 399 (596)
++... .+.+.| -++..+.+++.... -.|... .+|.+|-.|.+|+.. .-|++|.||.. |.
T Consensus 157 NdseD----pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~---- 227 (830)
T KOG4152|consen 157 NDSED----PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GC---- 227 (830)
T ss_pred ccccC----cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-cc----
Confidence 33211 122333 37777777776322 358863 789999999988762 35899999986 32
Q ss_pred CCCCCCcccEEEcCCCCCCCceEEe---cCCCcccccceEEEEcCCCcEEEecCC
Q 035640 400 DAEDPNLVPALYTPRGPSRQRFKEL---AAGTIPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 400 ~~~~~~~s~e~YDP~t~~g~~Wt~~---a~~~~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
.+-....-|-+|- .|+.. .-.+.||.-||+.++ ..+.||.||-
T Consensus 228 ----RLgDLW~Ldl~Tl---~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGW 273 (830)
T KOG4152|consen 228 ----RLGDLWTLDLDTL---TWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGW 273 (830)
T ss_pred ----cccceeEEeccee---ecccccccCCCCCCcccccceee--cceeEEecce
Confidence 1223455577777 88653 346779999999988 9999999995
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.74 E-value=2e-08 Score=75.85 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.5
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCccc
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPR 431 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R 431 (596)
+|..+++ +..+++|||+||.... ......+|+|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~-v~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSA-VVVGGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEE-EEECCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 5888865 5569999999998631 234568999999999 999999999998
No 33
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=6.5e-07 Score=92.26 Aligned_cols=226 Identities=16% Similarity=0.188 Sum_probs=131.9
Q ss_pred CCCEEeCcCCC-ccccccCeecCCCcEEEEcCCCCC-------CCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 130 TSELTALKLQT-DTWCSSGGLTADGDLVSTGGFGGG-------ANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 130 t~~w~~l~~~~-~~fc~~~~~l~dG~ilv~GG~~~g-------~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...|+.++..+ -.+-....+..+|+||++||.... .+++.+|||. +++|..+....+..--.++.+.+.+.
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~~~~~~~~ 147 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS-TNSWHKLDTRSPTGLVGASTFSLNGT 147 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC-CChhheeccccccccccceeEecCCc
Confidence 36799887653 334445566779999999998631 3678999999 99999885433334446777888556
Q ss_pred cEEEEcCCCC--------------------------------------CcEEEe-CCCCCCCCCcccccCcccccccCCC
Q 035640 202 GFIVVGGRGA--------------------------------------FSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKG 242 (596)
Q Consensus 202 ~VyViGG~~~--------------------------------------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g 242 (596)
+|++.||.+. ..+-.| |.+++|...
T Consensus 148 ~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~---------------- 211 (381)
T COG3055 148 KIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNL---------------- 211 (381)
T ss_pred eEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhc----------------
Confidence 9999999641 011234 666666310
Q ss_pred cCCcceeeeccCccceE---EEcCCCcEEEEecc------e--eEEecCC--CCeEEEeeccccCCCCCCCCCceEEecc
Q 035640 243 IDGQEMFLIENNLYPFV---YLSPDGNLFIFSNN------R--SILLDPK--ANKVVREFPILTGGSRNYPASAMSVLLP 309 (596)
Q Consensus 243 ~~~~~~~~~~~~~yp~~---~~~~dG~Ifv~Gg~------~--~e~yDp~--t~~w~~~lp~mp~~~R~~p~~g~av~lp 309 (596)
.++.+|+++ ++.-+++|.++-|. . ..++|.. .-+|. .++++|. +-.....|.+=-+
T Consensus 212 --------G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~-~l~~lp~-~~~~~~eGvAGaf- 280 (381)
T COG3055 212 --------GENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL-KLSDLPA-PIGSNKEGVAGAF- 280 (381)
T ss_pred --------CcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeee-eccCCCC-CCCCCccccceec-
Confidence 112233332 23335556666552 2 3345544 45675 6877764 2222112222111
Q ss_pred ccccccccccCCCEEEEEcCccCCccccccccccc--cCCCCc---eEEEEeeCCCCceEee-cCCCCccccceEEeCCC
Q 035640 310 LKLRANNATATKAKVLVCGGAQWDSFYFSETKKQF--FPALQD---CGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTE 383 (596)
Q Consensus 310 l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~--~~a~~s---~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG 383 (596)
....++++++.||+.......+..++.+ -+.++. -++|-.. ++.|+.. .||.++.++. .+.-++
T Consensus 281 -------~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~-s~~~nn 350 (381)
T COG3055 281 -------SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGV-SLSYNN 350 (381)
T ss_pred -------cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceE-EEecCC
Confidence 1345899999999753111111111111 011111 1223222 7899999 9999999985 456699
Q ss_pred eEEEEcCCCC
Q 035640 384 DILLLNGAKT 393 (596)
Q Consensus 384 ~V~vvGG~~~ 393 (596)
+||++||-..
T Consensus 351 ~vl~IGGE~~ 360 (381)
T COG3055 351 KVLLIGGETS 360 (381)
T ss_pred cEEEEccccC
Confidence 9999999864
No 34
>smart00612 Kelch Kelch domain.
Probab=98.43 E-value=3.2e-07 Score=67.38 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=38.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEE
Q 035640 384 DILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVL 439 (596)
Q Consensus 384 ~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~L 439 (596)
+|||+||... .....++|+|||+++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999752 223457899999999 99999999999999998887
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.35 E-value=3.5e-07 Score=67.79 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=37.8
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCC
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGT 428 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~ 428 (596)
||..++ ++..+++|||+||... ......++|+|||+++ +|+.+++|+
T Consensus 1 pR~~~~-~~~~~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA-AVVVGNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEE-EEEETTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCE-EEEECCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 588886 5556999999999863 1345668999999999 999999885
No 36
>PF13964 Kelch_6: Kelch motif
Probab=98.19 E-value=2.3e-06 Score=64.42 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=39.6
Q ss_pred ccccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCCCcc
Q 035640 143 WCSSGGLTADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALADPR 190 (596)
Q Consensus 143 fc~~~~~l~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~~~R 190 (596)
+|..+++..+++|||+||... ..+++++|||. +++|+.+++ |+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~-mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE-TNTWEQLPP-MPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC-CCcEEECCC-CCCCC
Confidence 456677788999999999875 36899999999 999999985 99987
No 37
>smart00612 Kelch Kelch domain.
Probab=98.00 E-value=1.1e-05 Score=59.13 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=37.4
Q ss_pred cEEEEcCCCC--CCCeEEEEeCCCCCceeecCcCCCCcccccEEEEc
Q 035640 154 DLVSTGGFGG--GANTVRYLSTCDGCDWREYPTALADPRWYSTQVTL 198 (596)
Q Consensus 154 ~ilv~GG~~~--g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L 198 (596)
+||++||... ..+++++|||. +++|.+.++ |+.+|.+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE-TNKWTPLPS-MPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC-CCeEccCCC-CCCccccceEEEe
Confidence 5899999863 35789999999 999999985 9999999998887
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.97 E-value=5.9e-06 Score=61.84 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=29.7
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCC
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGT 428 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~ 428 (596)
||..|+++.+.+++|||+||.+.. ...+..+++||++++ +|+.+++|+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689998888878999999998631 134557899999999 999998775
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.92 E-value=1.8e-05 Score=59.35 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEE
Q 035640 382 TEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSV 438 (596)
Q Consensus 382 dG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~ 438 (596)
+++|||+||.... ......++.+||++++ +|+.+++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5899999998621 1234457899999999 9999999999999998875
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.88 E-value=2.5e-05 Score=58.59 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=36.4
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCC
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGT 428 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~ 428 (596)
+|..|. ++++|+||||+||...+. .......+++||++++ +|+.+++|.
T Consensus 1 ~r~~hs-~~~~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHS-AVVLDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceE-EEEECCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 577785 567799999999992110 1223447899999999 999988774
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.52 E-value=4.2e-05 Score=56.54 Aligned_cols=43 Identities=19% Similarity=0.454 Sum_probs=35.6
Q ss_pred ccccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCC
Q 035640 143 WCSSGGLTADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALA 187 (596)
Q Consensus 143 fc~~~~~l~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~ 187 (596)
+|..+++..+++|||+||... ..+++++||+. +++|+++++ |+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE-TNTWEELPP-MP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT-TTEEEEEEE-ES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC-CCEEEEcCC-CC
Confidence 455667778999999999865 35799999999 999999875 74
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.51 E-value=0.00023 Score=53.35 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCC----CCCeEEEEeCCCCCceeecCcCCCCcccccEEEE
Q 035640 152 DGDLVSTGGFGG----GANTVRYLSTCDGCDWREYPTALADPRWYSTQVT 197 (596)
Q Consensus 152 dG~ilv~GG~~~----g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~ 197 (596)
+++|||+||... ..+++..||+. +++|+++++ ++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~-~~~W~~~~~-~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD-TNTWTRIGD-LPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC-CCEEEECCC-CCCCccceEEEE
Confidence 478999999872 25789999999 999999965 999999998875
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.98 E-value=0.0012 Score=49.42 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=32.7
Q ss_pred ccccCeecCCCcEEEEcCC--CC---CCCeEEEEeCCCCCceeecCcCC
Q 035640 143 WCSSGGLTADGDLVSTGGF--GG---GANTVRYLSTCDGCDWREYPTAL 186 (596)
Q Consensus 143 fc~~~~~l~dG~ilv~GG~--~~---g~~~v~~fdP~~t~~W~~~~~~M 186 (596)
++...+++.+++|||+||+ .. ..+++++||+. +.+|++++. |
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~-t~~W~~~~~-~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE-TNQWTELSP-M 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECC-CCEEeecCC-C
Confidence 3444566789999999999 21 25789999999 999999864 5
No 44
>PLN02772 guanylate kinase
Probab=96.97 E-value=0.0022 Score=68.76 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=54.0
Q ss_pred CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEE---ecCCCcccccceEEEEcCCCcEEE
Q 035640 371 PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKE---LAAGTIPRMYHSSSVLLPDGTVLV 447 (596)
Q Consensus 371 ~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~---~a~~~~~R~yhs~a~LlpDG~Vlv 447 (596)
+|..+++ +..++++||+||.+.. ......+.+||+.|. +|+. .+.-|.+|-.||+++ +.|.||||
T Consensus 24 ~~~~~ta-v~igdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhSa~v-~~~~rilv 91 (398)
T PLN02772 24 PKNRETS-VTIGDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYSAVV-LNKDRILV 91 (398)
T ss_pred CCCccee-EEECCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcceEEE-ECCceEEE
Confidence 6777864 5559999999997631 112346899999999 9974 577899999998665 58999999
Q ss_pred ecCCC
Q 035640 448 AGSNT 452 (596)
Q Consensus 448 ~GG~~ 452 (596)
.+++.
T Consensus 92 ~~~~~ 96 (398)
T PLN02772 92 IKKGS 96 (398)
T ss_pred EeCCC
Confidence 99653
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.80 E-value=0.0009 Score=49.88 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=25.2
Q ss_pred cccCeecCCCcEEEEcCCCC---CCCeEEEEeCCCCCceeecCcCCC
Q 035640 144 CSSGGLTADGDLVSTGGFGG---GANTVRYLSTCDGCDWREYPTALA 187 (596)
Q Consensus 144 c~~~~~l~dG~ilv~GG~~~---g~~~v~~fdP~~t~~W~~~~~~M~ 187 (596)
+++.+.+.+++||++||... ..+.+++||+. +++|+++++ |+
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~-~~~W~~~~~-~P 48 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIE-TNTWTRLPS-MP 48 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETT-TTEEEE--S-S-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECC-CCEEEECCC-CC
Confidence 33444455799999999763 35789999999 999999864 65
No 46
>PLN02772 guanylate kinase
Probab=96.09 E-value=0.02 Score=61.56 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred ccccCeecCCCcEEEEcCCCCC---CCeEEEEeCCCCCceeecC--cCCCCcccccEEEEccCCcEEEEcCCC
Q 035640 143 WCSSGGLTADGDLVSTGGFGGG---ANTVRYLSTCDGCDWREYP--TALADPRWYSTQVTLPDGGFIVVGGRG 210 (596)
Q Consensus 143 fc~~~~~l~dG~ilv~GG~~~g---~~~v~~fdP~~t~~W~~~~--~~M~~~R~y~s~~~L~dG~VyViGG~~ 210 (596)
.|...++..+.++||+||.++. .+.+.+||+. +.+|.... ..-+.+|-.|+++++.|.+|+|+++-.
T Consensus 25 ~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~-t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI-TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCcceeEEECCEEEEEcccCCCccccceEEEEECC-CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 3444556668999999997763 3589999999 99998653 246788999999999999999998643
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.60 E-value=4.2 Score=43.89 Aligned_cols=242 Identities=14% Similarity=0.181 Sum_probs=115.5
Q ss_pred EEEEeCCCCC--EEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC--ceeecCcCCC--CcccccEEE
Q 035640 123 SVLFDFETSE--LTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGC--DWREYPTALA--DPRWYSTQV 196 (596)
Q Consensus 123 ~~~yDp~t~~--w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~--~W~~~~~~M~--~~R~y~s~~ 196 (596)
...+|.+|.+ |+.-.. ....+ ..++.++++|+..+. ..+..||+. +. .|..... .+ ..|...+.+
T Consensus 132 l~ald~~tG~~~W~~~~~-~~~~s--sP~v~~~~v~v~~~~----g~l~ald~~-tG~~~W~~~~~-~~~~~~~~~~sP~ 202 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA-GEALS--RPVVSDGLVLVHTSN----GMLQALNES-DGAVKWTVNLD-VPSLTLRGESAPA 202 (394)
T ss_pred EEEEECCCCCCcccccCC-Cceec--CCEEECCEEEEECCC----CEEEEEEcc-CCCEeeeecCC-CCcccccCCCCCE
Confidence 5677887764 653211 12222 234557888775432 368899987 44 4865322 11 112223333
Q ss_pred EccCCcEEEEcCCCCCcEEEeCCCCC--CCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc-
Q 035640 197 TLPDGGFIVVGGRGAFSYEYIPPEGQ--SNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN- 273 (596)
Q Consensus 197 ~L~dG~VyViGG~~~~~~E~yP~~~~--w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~- 273 (596)
+ .+|.||+..+. +.-+-+.+.+++ |.... ..|.- .. ...++ ......| ++.+|.||+.+..
T Consensus 203 v-~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~-~~~~~-~~--------~~~~~-~~~~~sP---~v~~~~vy~~~~~g 266 (394)
T PRK11138 203 T-AFGGAIVGGDN-GRVSAVLMEQGQLIWQQRI-SQPTG-AT--------EIDRL-VDVDTTP---VVVGGVVYALAYNG 266 (394)
T ss_pred E-ECCEEEEEcCC-CEEEEEEccCChhhheecc-ccCCC-cc--------chhcc-cccCCCc---EEECCEEEEEEcCC
Confidence 3 37777775442 221212244432 42100 00000 00 00000 0001122 2358888887643
Q ss_pred eeEEecCCCCe--EEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCce
Q 035640 274 RSILLDPKANK--VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDC 351 (596)
Q Consensus 274 ~~e~yDp~t~~--w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 351 (596)
...++|+.+++ |.+.+ .. . ...++ .+++||++... ..+
T Consensus 267 ~l~ald~~tG~~~W~~~~---~~-~-----~~~~~-------------~~~~vy~~~~~------------------g~l 306 (394)
T PRK11138 267 NLVALDLRSGQIVWKREY---GS-V-----NDFAV-------------DGGRIYLVDQN------------------DRV 306 (394)
T ss_pred eEEEEECCCCCEEEeecC---CC-c-----cCcEE-------------ECCEEEEEcCC------------------CeE
Confidence 46778988765 54321 10 0 01111 37888886532 134
Q ss_pred EEEEeeCCCCceEeecCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCccc
Q 035640 352 GRIDITKPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPR 431 (596)
Q Consensus 352 ~~id~~~~~~~W~~~~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R 431 (596)
..+|+.+....|+...+. .+...+ .++.+|+||+.... | .+.+.|+++.+ ..|+.- .....
T Consensus 307 ~ald~~tG~~~W~~~~~~-~~~~~s-p~v~~g~l~v~~~~--G------------~l~~ld~~tG~-~~~~~~--~~~~~ 367 (394)
T PRK11138 307 YALDTRGGVELWSQSDLL-HRLLTA-PVLYNGYLVVGDSE--G------------YLHWINREDGR-FVAQQK--VDSSG 367 (394)
T ss_pred EEEECCCCcEEEcccccC-CCcccC-CEEECCEEEEEeCC--C------------EEEEEECCCCC-EEEEEE--cCCCc
Confidence 567776444578765322 233333 34459999875331 1 35678887751 135431 11122
Q ss_pred ccceEEEEcCCCcEEEecC
Q 035640 432 MYHSSSVLLPDGTVLVAGS 450 (596)
Q Consensus 432 ~yhs~a~LlpDG~Vlv~GG 450 (596)
.+.+-++. ||+|||..-
T Consensus 368 ~~s~P~~~--~~~l~v~t~ 384 (394)
T PRK11138 368 FLSEPVVA--DDKLLIQAR 384 (394)
T ss_pred ceeCCEEE--CCEEEEEeC
Confidence 34444444 999998743
No 48
>PF13854 Kelch_5: Kelch motif
Probab=94.95 E-value=0.051 Score=39.21 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCC
Q 035640 368 MPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRG 415 (596)
Q Consensus 368 M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t 415 (596)
+|.+|..|++++ .+++|||.||... . .......+.+||..+
T Consensus 1 ~P~~R~~hs~~~-~~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVV-VGNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEE-ECCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 478999998655 5999999999872 0 122233567777554
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.65 E-value=5.5 Score=42.97 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=67.5
Q ss_pred cCCCcEEEEecc-eeEEecCCCCe--EEEeeccccC-CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccc
Q 035640 262 SPDGNLFIFSNN-RSILLDPKANK--VVREFPILTG-GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYF 337 (596)
Q Consensus 262 ~~dG~Ifv~Gg~-~~e~yDp~t~~--w~~~lp~mp~-~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 337 (596)
+.+|+||+..+. ....+|+++++ |..... .|. ..+.. +..++ .++.||+..+.
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~--~sP~v-------------~~~~v~~~~~~------- 214 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLD-VPSLTLRGE--SAPAT-------------AFGGAIVGGDN------- 214 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCC-CCcccccCC--CCCEE-------------ECCEEEEEcCC-------
Confidence 347888876544 46788998776 542221 110 00110 11111 35677764432
Q ss_pred ccccccccCCCCceEEEEeeCCCCceEee-cCCCC-----c---cccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCccc
Q 035640 338 SETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSP-----R---VMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVP 408 (596)
Q Consensus 338 ~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~-----R---~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~ 408 (596)
..+..+|+.+....|+.. ..+.. | ... +-++.+|+||+.+.. | ..
T Consensus 215 -----------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~--g------------~l 268 (394)
T PRK11138 215 -----------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYN--G------------NL 268 (394)
T ss_pred -----------CEEEEEEccCChhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcC--C------------eE
Confidence 123446666445678765 33321 1 112 234558999986532 1 35
Q ss_pred EEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecC
Q 035640 409 ALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGS 450 (596)
Q Consensus 409 e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG 450 (596)
.++|+++. ...|+.-- .. ..+.+ ..+|+||+...
T Consensus 269 ~ald~~tG-~~~W~~~~--~~---~~~~~--~~~~~vy~~~~ 302 (394)
T PRK11138 269 VALDLRSG-QIVWKREY--GS---VNDFA--VDGGRIYLVDQ 302 (394)
T ss_pred EEEECCCC-CEEEeecC--CC---ccCcE--EECCEEEEEcC
Confidence 78898875 23687521 11 11223 34889998764
No 50
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.49 E-value=6.6 Score=40.27 Aligned_cols=231 Identities=20% Similarity=0.210 Sum_probs=123.9
Q ss_pred EEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCccccc---EEEEcc
Q 035640 123 SVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYS---TQVTLP 199 (596)
Q Consensus 123 ~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~---s~~~L~ 199 (596)
....||+|.+....+.-.-..-.+.++-+||...|+-+ ...|.++||+ +..-++.+ |+..+-+. +++.=.
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk-t~evt~f~--lp~~~a~~nlet~vfD~ 157 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK-TLEVTRFP--LPLEHADANLETAVFDP 157 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc-ccceEEee--cccccCCCcccceeeCC
Confidence 34568999998877655433333445566777777633 2378999998 66665542 44444333 333334
Q ss_pred CCcEEEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccce-EEEcCCCcEEEE--ecceeE
Q 035640 200 DGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPF-VYLSPDGNLFIF--SNNRSI 276 (596)
Q Consensus 200 dG~VyViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~-~~~~~dG~Ifv~--Gg~~~e 276 (596)
+|.+.-.|=. +.-.+.-|..+.- .+.|. +..--|. ..+.+||.+|+. .++...
T Consensus 158 ~G~lWFt~q~-G~yGrLdPa~~~i----~vfpa-------------------PqG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 158 WGNLWFTGQI-GAYGRLDPARNVI----SVFPA-------------------PQGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred CccEEEeecc-ccceecCcccCce----eeecc-------------------CCCCCCcceEECCCCcEEEEeccccceE
Confidence 5777777632 1111111332210 00010 1011122 356789999987 666677
Q ss_pred EecCCCCeEEEeeccccCC----CCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceE
Q 035640 277 LLDPKANKVVREFPILTGG----SRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCG 352 (596)
Q Consensus 277 ~yDp~t~~w~~~lp~mp~~----~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 352 (596)
+.||.+..-. .+|. |.. .|. ..+ .-.+++-+. + -...++.
T Consensus 214 ridp~~~~ae-v~p~-P~~~~~gsRr---iws--------------dpig~~wit---t--------------wg~g~l~ 257 (353)
T COG4257 214 RIDPFAGHAE-VVPQ-PNALKAGSRR---IWS--------------DPIGRAWIT---T--------------WGTGSLH 257 (353)
T ss_pred EcccccCCcc-eecC-CCcccccccc---ccc--------------CccCcEEEe---c--------------cCCceee
Confidence 7888887542 3432 321 121 011 124555553 1 1123577
Q ss_pred EEEeeCCCCceEeecCC--CCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcc
Q 035640 353 RIDITKPNAVWKKERMP--SPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIP 430 (596)
Q Consensus 353 ~id~~~~~~~W~~~~M~--~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~ 430 (596)
+|||. ..+|..-+|| .+|-+.- -|=-.|+|+..- ++ ......|||++. +|+.+ +++
T Consensus 258 rfdPs--~~sW~eypLPgs~arpys~-rVD~~grVW~se-a~------------agai~rfdpeta---~ftv~---p~p 315 (353)
T COG4257 258 RFDPS--VTSWIEYPLPGSKARPYSM-RVDRHGRVWLSE-AD------------AGAIGRFDPETA---RFTVL---PIP 315 (353)
T ss_pred EeCcc--cccceeeeCCCCCCCccee-eeccCCcEEeec-cc------------cCceeecCcccc---eEEEe---cCC
Confidence 89987 6679876554 4555542 333347777631 11 114689999999 99874 456
Q ss_pred cccceEEEEcCCCc
Q 035640 431 RMYHSSSVLLPDGT 444 (596)
Q Consensus 431 R~yhs~a~LlpDG~ 444 (596)
|-......| |||
T Consensus 316 r~n~gn~ql--~gr 327 (353)
T COG4257 316 RPNSGNIQL--DGR 327 (353)
T ss_pred CCCCCceec--cCC
Confidence 654444444 554
No 51
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=93.44 E-value=11 Score=38.97 Aligned_cols=244 Identities=18% Similarity=0.230 Sum_probs=126.7
Q ss_pred EEEEeCCC-CCEEeC--cCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCcee---ecCcCCCCcccccEEE
Q 035640 123 SVLFDFET-SELTAL--KLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWR---EYPTALADPRWYSTQV 196 (596)
Q Consensus 123 ~~~yDp~t-~~w~~l--~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~---~~~~~M~~~R~y~s~~ 196 (596)
.-+||-.| |+...+ +..--|-| +..|.|..+..||.+ +.+.+|+.. +.+=. ....++.--+.|-+.+
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtC---A~sPSg~~VAcGGLd---N~Csiy~ls-~~d~~g~~~v~r~l~gHtgylScC 151 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTC---AYSPSGNFVACGGLD---NKCSIYPLS-TRDAEGNVRVSRELAGHTGYLSCC 151 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEE---EECCCCCeEEecCcC---ceeEEEecc-cccccccceeeeeecCccceeEEE
Confidence 45676443 554433 33334455 456899999999976 567788865 33211 2222355667888888
Q ss_pred Ecc-CCcEEEEcCCCCCcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcC-CCcEEEEecc
Q 035640 197 TLP-DGGFIVVGGRGAFSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSP-DGNLFIFSNN 273 (596)
Q Consensus 197 ~L~-dG~VyViGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~-dG~Ifv~Gg~ 273 (596)
... |+.|+.-.|. .+.-+| -.+++ ....+.-.+ .+. -...+.| +++.|+.|+.
T Consensus 152 ~f~dD~~ilT~SGD--~TCalWDie~g~-----~~~~f~GH~---------gDV--------~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 152 RFLDDNHILTGSGD--MTCALWDIETGQ-----QTQVFHGHT---------GDV--------MSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred EEcCCCceEecCCC--ceEEEEEcccce-----EEEEecCCc---------ccE--------EEEecCCCCCCeEEeccc
Confidence 654 5666665553 334444 22221 011110000 000 0123456 8999999986
Q ss_pred e--eEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCce
Q 035640 274 R--SILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDC 351 (596)
Q Consensus 274 ~--~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 351 (596)
+ +.++|.....-.+.+ ++. ..- -.+...+| +|.-++.|- + -.+|
T Consensus 208 D~~aklWD~R~~~c~qtF---~gh-esD--INsv~ffP-----------~G~afatGS-D----------------D~tc 253 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTF---EGH-ESD--INSVRFFP-----------SGDAFATGS-D----------------DATC 253 (343)
T ss_pred ccceeeeeccCcceeEee---ccc-ccc--cceEEEcc-----------CCCeeeecC-C----------------Ccee
Confidence 4 678888877654443 221 100 11122222 444444443 2 1356
Q ss_pred EEEEeeCCC--CceEeecCCCCccccceEE-eCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCC
Q 035640 352 GRIDITKPN--AVWKKERMPSPRVMGDMVI-LPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGT 428 (596)
Q Consensus 352 ~~id~~~~~--~~W~~~~M~~~R~~~~avv-LpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~ 428 (596)
-.||+.... ..++.++...+- ++|. -.-|+++..|..+ +++++||--+. += +..+.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gi---tSv~FS~SGRlLfagy~d-------------~~c~vWDtlk~---e~--vg~L~ 312 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGI---TSVAFSKSGRLLFAGYDD-------------FTCNVWDTLKG---ER--VGVLA 312 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCc---eeEEEcccccEEEeeecC-------------CceeEeecccc---ce--EEEee
Confidence 778887311 112222222222 2222 3479999888543 25789996665 22 22222
Q ss_pred cccccceEEEEcCCCcEEEecCCC
Q 035640 429 IPRMYHSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 429 ~~R~yhs~a~LlpDG~Vlv~GG~~ 452 (596)
--++.-|+--+-|||.-+..|+-.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchh
Confidence 222334666678999999998754
No 52
>PRK13684 Ycf48-like protein; Provisional
Probab=93.43 E-value=12 Score=39.62 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred CCceEeecCCCC---ccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecC-CCcccccce
Q 035640 360 NAVWKKERMPSP---RVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAA-GTIPRMYHS 435 (596)
Q Consensus 360 ~~~W~~~~M~~~---R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~-~~~~R~yhs 435 (596)
...|+...++.. ....+....++++++++|... .+|- ..|.|++|+.+.. ...+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G----------------~v~~-S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG----------------TLLV-SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCC----------------eEEE-eCCCCCCCeECCcCCCCCcceEE
Confidence 568987644322 122333456788999887642 1221 2356679998753 334434443
Q ss_pred EEEEcCCCcEEEecCC
Q 035640 436 SSVLLPDGTVLVAGSN 451 (596)
Q Consensus 436 ~a~LlpDG~Vlv~GG~ 451 (596)
. +...+++.|++|..
T Consensus 308 ~-~~~~~~~~~~~G~~ 322 (334)
T PRK13684 308 I-VFLDPEKGFVLGQR 322 (334)
T ss_pred E-EEeCCCceEEECCC
Confidence 3 34568888888864
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.72 E-value=13 Score=38.13 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCCCccccccccC---CccccCCCccccCCCCCceEeccCCCcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCc
Q 035640 31 GDAPKAIQKVETG---NDANDDGNKIAETGYNGKWELVSENSGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPC 107 (596)
Q Consensus 31 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~W~~v~~~~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~ 107 (596)
|+.++++.+-.++ =.|.-.|...--+|++|+=+.+.-..+-++ |..++.+||-..|.++..
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~P-hgiv~gpdg~~Witd~~~--------------- 124 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASP-HGIVVGPDGSAWITDTGL--------------- 124 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCC-ceEEECCCCCeeEecCcc---------------
Confidence 5666664433333 122222333336777777777643445555 555556777666655311
Q ss_pred cccccccCccccceeEEEEeCCCCCEEeCcCCCcc---ccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCc
Q 035640 108 RVADHITGELDCWCHSVLFDFETSELTALKLQTDT---WCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPT 184 (596)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~---fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~ 184 (596)
-...+||+|.+++..+..-++ --...++..+|++..+|=... --..||. ++.-+..+.
T Consensus 125 --------------aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~----yGrLdPa-~~~i~vfpa 185 (353)
T COG4257 125 --------------AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA----YGRLDPA-RNVISVFPA 185 (353)
T ss_pred --------------eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc----ceecCcc-cCceeeecc
Confidence 246778888888866544222 123456677899999984321 0145665 443332221
Q ss_pred CCCCcccccEEEEccCCcEEEEc
Q 035640 185 ALADPRWYSTQVTLPDGGFIVVG 207 (596)
Q Consensus 185 ~M~~~R~y~s~~~L~dG~VyViG 207 (596)
+.+-.-.+.|+-+||+|+...
T Consensus 186 --PqG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 186 --PQGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred --CCCCCCcceEECCCCcEEEEe
Confidence 223333467888899999873
No 54
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.21 E-value=14 Score=37.02 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=42.0
Q ss_pred EEEEeCCCCCEEeCcCCCccccccCeecCCCcE-EEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 123 SVLFDFETSELTALKLQTDTWCSSGGLTADGDL-VSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 123 ~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~i-lv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
..+||+.+++....-..... ..+..+.+||+. +++++.. ..+.+||.. +.+.... ++....-...+..+||
T Consensus 13 v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~-~~~~~~~---~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDS---DTIQVIDLA-TGEVIGT---LPSGPDPELFALHPNG 84 (300)
T ss_pred EEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCC---CeEEEEECC-CCcEEEe---ccCCCCccEEEECCCC
Confidence 55666666553322111111 122445678875 4665532 568899987 6655431 1111111234556677
Q ss_pred cEEEEcCCCCCcEEEe
Q 035640 202 GFIVVGGRGAFSYEYI 217 (596)
Q Consensus 202 ~VyViGG~~~~~~E~y 217 (596)
+.+.+.+.....+.+|
T Consensus 85 ~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 85 KILYIANEDDNLVTVI 100 (300)
T ss_pred CEEEEEcCCCCeEEEE
Confidence 7444433333345555
No 55
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.13 E-value=0.18 Score=54.89 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred CCcEEEEecce-------eEEecCCCCeEEEee---ccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCC
Q 035640 264 DGNLFIFSNNR-------SILLDPKANKVVREF---PILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWD 333 (596)
Q Consensus 264 dG~Ifv~Gg~~-------~e~yDp~t~~w~~~l---p~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~ 333 (596)
+.+||+.||.+ .|.|.-..|.|+ .+ ...|+ .|. |.-.|. .....|+|+.|-.-..
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~-~iN~~t~~PG-~Rs---CHRMVi----------d~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWT-CINRDTEGPG-ARS---CHRMVI----------DISRRKLYLLGRYLDS 336 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeE-EeecCCCCCc-chh---hhhhhh----------hhhHhHHhhhhhcccc
Confidence 45999999964 589999999997 33 22453 554 333332 1135589999865311
Q ss_pred ccccccccccccCCCCceEEEEeeCCCCceEeecCCCCc-------cccceEEeCCCe--EEEEcCCCCCCCCCCCCCCC
Q 035640 334 SFYFSETKKQFFPALQDCGRIDITKPNAVWKKERMPSPR-------VMGDMVILPTED--ILLLNGAKTGTSGWNDAEDP 404 (596)
Q Consensus 334 ~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R-------~~~~avvLpdG~--V~vvGG~~~g~~g~~~~~~~ 404 (596)
+. .....+-+...++|+. ++.|...+|.... .-|.++|- ..| |||.||..... +++
T Consensus 337 S~------r~~~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd-~~k~~iyVfGGr~~~~------~e~ 401 (723)
T KOG2437|consen 337 SV------RNSKSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVD-SEKHMIYVFGGRILTC------NEP 401 (723)
T ss_pred cc------ccccccccceEEEecC--CceeEEecccccccCCcceeecceeeEe-cCcceEEEecCeeccC------CCc
Confidence 11 1112345667889987 8899987665542 33554442 445 99999986421 223
Q ss_pred Ccc-cEEEcCCCCCCCceEEecC----------CCcccccceEEEEcCCCcEEEecCC
Q 035640 405 NLV-PALYTPRGPSRQRFKELAA----------GTIPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 405 ~~s-~e~YDP~t~~g~~Wt~~a~----------~~~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
++. ...||-... .|..++. -.+.|+.|.+-..-.+.+.|++||-
T Consensus 402 ~f~GLYaf~~~~~---~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq 456 (723)
T KOG2437|consen 402 QFSGLYAFNCQCQ---TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ 456 (723)
T ss_pred cccceEEEecCCc---cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc
Confidence 332 456776665 7765432 2356888876554445556666664
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.80 E-value=19 Score=39.50 Aligned_cols=244 Identities=17% Similarity=0.167 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCEEe-CcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCC--CcccccEEEE
Q 035640 121 CHSVLFDFETSELTA-LKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALA--DPRWYSTQVT 197 (596)
Q Consensus 121 ~~~~~yDp~t~~w~~-l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~--~~R~y~s~~~ 197 (596)
+-+.+|+..+..... +....+.-|+ ..+-.||+++.+|+.. -.|.+||-. +..- +- .|. +.+-..+--.
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s-~~fR~DG~LlaaGD~s---G~V~vfD~k-~r~i--LR-~~~ah~apv~~~~f~ 119 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYS-VDFRSDGRLLAAGDES---GHVKVFDMK-SRVI--LR-QLYAHQAPVHVTKFS 119 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeE-EEeecCCeEEEccCCc---CcEEEeccc-cHHH--HH-HHhhccCceeEEEec
Confidence 346777776655443 2223333343 3455699999999754 348899943 2111 10 011 1111111111
Q ss_pred ccCCcEEEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEE--cCCCcEEEEecce-
Q 035640 198 LPDGGFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYL--SPDGNLFIFSNNR- 274 (596)
Q Consensus 198 L~dG~VyViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~--~~dG~Ifv~Gg~~- 274 (596)
-.|+.+++.|+.+. ...+|-..+ ..........+ -|-++.. -.++.|++.||.+
T Consensus 120 ~~d~t~l~s~sDd~-v~k~~d~s~----a~v~~~l~~ht------------------DYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK-VVKYWDLST----AYVQAELSGHT------------------DYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred ccCCeEEEecCCCc-eEEEEEcCC----cEEEEEecCCc------------------ceeEeeccccCCCeEEEecCCCc
Confidence 23888999887543 333331111 00111111001 1323222 2378899999975
Q ss_pred -eEEecCCCC-eEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceE
Q 035640 275 -SILLDPKAN-KVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCG 352 (596)
Q Consensus 275 -~e~yDp~t~-~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 352 (596)
..+||...- .|..++ ..+. ..-.+++|. -...|..+||. ++-
T Consensus 177 ~vrl~DtR~~~~~v~el---nhg~------pVe~vl~lp--------sgs~iasAgGn-------------------~vk 220 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVEL---NHGC------PVESVLALP--------SGSLIASAGGN-------------------SVK 220 (487)
T ss_pred eEEEEEeccCCceeEEe---cCCC------ceeeEEEcC--------CCCEEEEcCCC-------------------eEE
Confidence 567888776 444322 2111 122334332 13556666663 234
Q ss_pred EEEeeCCCCceEee-cCCC-CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcc
Q 035640 353 RIDITKPNAVWKKE-RMPS-PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIP 430 (596)
Q Consensus 353 ~id~~~~~~~W~~~-~M~~-~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~ 430 (596)
..|+.. .. +.. .|.. -..-.+....-|++=++.||-+. .+-+|| +. .|+.+-.+..|
T Consensus 221 VWDl~~--G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd--~t---~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 221 VWDLTT--GG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFD--TT---NYKVVHSWKYP 279 (487)
T ss_pred EEEecC--Cc-eehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEE--cc---ceEEEEeeecc
Confidence 455541 11 111 2221 00001112223456667777651 468999 55 68887777666
Q ss_pred cccceEEEEcCCCcEEEecCCCC
Q 035640 431 RMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 431 R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
----|.++ -||++.+|+|....
T Consensus 280 ~pvLsiav-s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 280 GPVLSIAV-SPDDQTVVIGMSNG 301 (487)
T ss_pred cceeeEEe-cCCCceEEEecccc
Confidence 55556665 47889999887543
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.63 E-value=13 Score=35.71 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=33.8
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcc-cccEEEEccCCcEEEEcCCCCCcEEEe
Q 035640 147 GGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPR-WYSTQVTLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 147 ~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R-~y~s~~~L~dG~VyViGG~~~~~~E~y 217 (596)
....++++.+++++.+ ..+.+||.. +.+.... +.... .-.+....+++++++.|+.+ ..+.+|
T Consensus 57 ~~~~~~~~~l~~~~~~---~~i~i~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~ 120 (289)
T cd00200 57 VAASADGTYLASGSSD---KTIRLWDLE-TGECVRT---LTGHTSYVSSVAFSPDGRILSSSSRD-KTIKVW 120 (289)
T ss_pred EEECCCCCEEEEEcCC---CeEEEEEcC-cccceEE---EeccCCcEEEEEEcCCCCEEEEecCC-CeEEEE
Confidence 3455677788888753 468889876 4322111 11111 12233445566777777643 345555
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.15 E-value=23 Score=37.53 Aligned_cols=95 Identities=19% Similarity=0.096 Sum_probs=48.4
Q ss_pred eEEEEeCCCCCEEeCcCCCcc-ccccCeecCC-CcEEEEcCCCCCCCeEEEEeCCC-CCceeecCcCCC-CcccccEEEE
Q 035640 122 HSVLFDFETSELTALKLQTDT-WCSSGGLTAD-GDLVSTGGFGGGANTVRYLSTCD-GCDWREYPTALA-DPRWYSTQVT 197 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~-fc~~~~~l~d-G~ilv~GG~~~g~~~v~~fdP~~-t~~W~~~~~~M~-~~R~y~s~~~ 197 (596)
....||.++.+++.+...... -.+.-++.++ ..||++.-.......+..|+-.. +.+.+.+.. .. .+..-...+.
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EEESSSCEEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee-eccCCCCcEEEEE
Confidence 466778899998877542111 1111223344 45666644321123455554331 356666543 33 4454444555
Q ss_pred ccCCcEEEEcCCCCCcEEEe
Q 035640 198 LPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 198 L~dG~VyViGG~~~~~~E~y 217 (596)
-+||+.+++.-..+.++.+|
T Consensus 95 ~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEE
T ss_pred ecCCCEEEEEEccCCeEEEE
Confidence 56777666654444566666
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.13 E-value=7.1 Score=38.64 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCcEEEEecceeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccccccccc
Q 035640 264 DGNLFIFSNNRSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQ 343 (596)
Q Consensus 264 dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 343 (596)
||-|.+.......++||.|.+|. .+|+.+. .+.++... ...+...+ ....=||+.+.... +.
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~~~-~~~~G~d~-----~~~~YKVv~~~~~~-~~--------- 66 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKESD-TYFLGYDP-----IEKQYKVLCFSDRS-GN--------- 66 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccccc-eEEEeecc-----cCCcEEEEEEEeec-CC---------
Confidence 55555444455678999999996 7876542 22221111 11111111 12344677665421 00
Q ss_pred ccCCCCceEEEEeeCCCCceEee-cCCC-CccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCce
Q 035640 344 FFPALQDCGRIDITKPNAVWKKE-RMPS-PRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRF 421 (596)
Q Consensus 344 ~~~a~~s~~~id~~~~~~~W~~~-~M~~-~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~W 421 (596)
.....+++|++. +++|+.. ..+. ......++ +.||.||.+.-...+ ++...+..||-.++ +|
T Consensus 67 --~~~~~~~Vys~~--~~~Wr~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f 130 (230)
T TIGR01640 67 --RNQSEHQVYTLG--SNSWRTIECSPPHHPLKSRGV-CINGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RF 130 (230)
T ss_pred --CCCccEEEEEeC--CCCccccccCCCCccccCCeE-EECCEEEEEEEECCC--------CCcEEEEEEEcccc---eE
Confidence 012467889987 7899986 3221 11112234 459999998743211 11225788999999 99
Q ss_pred EEecCCCccccc-c-eEEEEcCCCcEEEecC
Q 035640 422 KELAAGTIPRMY-H-SSSVLLPDGTVLVAGS 450 (596)
Q Consensus 422 t~~a~~~~~R~y-h-s~a~LlpDG~Vlv~GG 450 (596)
...-+++..+.. + ...+...+|++-++..
T Consensus 131 ~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 131 KEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred eeeeecCccccccccceEEEEECCEEEEEEe
Confidence 953344433321 1 1222223788777654
No 60
>PF13854 Kelch_5: Kelch motif
Probab=91.03 E-value=0.24 Score=35.62 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=20.8
Q ss_pred CCCcccccEEEEccCCcEEEEcCCC
Q 035640 186 LADPRWYSTQVTLPDGGFIVVGGRG 210 (596)
Q Consensus 186 M~~~R~y~s~~~L~dG~VyViGG~~ 210 (596)
++.+|+.|++++. +++||+.||..
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCcc
Confidence 3578999999888 79999999976
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.71 E-value=14 Score=40.37 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCCC
Q 035640 321 KAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAK 392 (596)
Q Consensus 321 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~ 392 (596)
++.=|+.||.+. -+-.||. ..|+.. .|.++---.+..+-||++..++|..+
T Consensus 249 ~~~rLlS~sLD~-----------------~VKVfd~----t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 249 DSTRLLSGSLDR-----------------HVKVFDT----TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred CCceEeeccccc-----------------ceEEEEc----cceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 445677777761 2345663 357776 66555433445678899999999865
No 62
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=90.66 E-value=22 Score=36.74 Aligned_cols=159 Identities=19% Similarity=0.307 Sum_probs=90.1
Q ss_pred EcCCCcEEEEecc--eeEEecCCCCeEE--Eeec-cccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcc
Q 035640 261 LSPDGNLFIFSNN--RSILLDPKANKVV--REFP-ILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSF 335 (596)
Q Consensus 261 ~~~dG~Ifv~Gg~--~~e~yDp~t~~w~--~~lp-~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~ 335 (596)
-.|.|+..+.||- .+-+|+.++..-. ..+. .++ +.+.| -...-.+ .++.|+.--|-
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgy--lScC~f~-----------dD~~ilT~SGD----- 165 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGY--LSCCRFL-----------DDNHILTGSGD----- 165 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeec-Cccce--eEEEEEc-----------CCCceEecCCC-----
Confidence 4689998889984 4778988754111 0111 123 24444 1122222 26666654441
Q ss_pred ccccccccccCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeC-CCeEEEEcCCCCCCCCCCCCCCCCcccEEEcC
Q 035640 336 YFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILP-TEDILLLNGAKTGTSGWNDAEDPNLVPALYTP 413 (596)
Q Consensus 336 ~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLp-dG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP 413 (596)
.+|...|++ +.+=... .=...-++. --+.| |++.||.||.+. ++.+||-
T Consensus 166 -------------~TCalWDie--~g~~~~~f~GH~gDV~s-lsl~p~~~ntFvSg~cD~-------------~aklWD~ 216 (343)
T KOG0286|consen 166 -------------MTCALWDIE--TGQQTQVFHGHTGDVMS-LSLSPSDGNTFVSGGCDK-------------SAKLWDV 216 (343)
T ss_pred -------------ceEEEEEcc--cceEEEEecCCcccEEE-EecCCCCCCeEEeccccc-------------ceeeeec
Confidence 367777876 4444443 333333333 23456 999999999863 4578887
Q ss_pred CCCCC-CceEEecCCCcccccceEEEEcCCCcEEEecCCCCCc--cccCCCCCCcceEEEEcCCCCC
Q 035640 414 RGPSR-QRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNG--YILDAKYPTELRVEKFSPPYLD 477 (596)
Q Consensus 414 ~t~~g-~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~~--~~~~~~~p~~~~vE~y~Ppyl~ 477 (596)
....- ++|. -. -..-.+....|+|--++.|++.... |+. .....+++|+++-..
T Consensus 217 R~~~c~qtF~----gh--esDINsv~ffP~G~afatGSDD~tcRlyDl----RaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 217 RSGQCVQTFE----GH--ESDINSVRFFPSGDAFATGSDDATCRLYDL----RADQELAVYSHDSII 273 (343)
T ss_pred cCcceeEeec----cc--ccccceEEEccCCCeeeecCCCceeEEEee----cCCcEEeeeccCccc
Confidence 77611 1221 11 1112345568999999999986542 322 234578999977764
No 63
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.30 E-value=4.7 Score=39.95 Aligned_cols=142 Identities=10% Similarity=0.155 Sum_probs=80.7
Q ss_pred eEEEEeCCCCCEEeCcCCCc--cccccCeecCCCcEEEEcCCCCC-C-CeEEEEeCCCCCceee-cCcCCCCcc----cc
Q 035640 122 HSVLFDFETSELTALKLQTD--TWCSSGGLTADGDLVSTGGFGGG-A-NTVRYLSTCDGCDWRE-YPTALADPR----WY 192 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~--~fc~~~~~l~dG~ilv~GG~~~g-~-~~v~~fdP~~t~~W~~-~~~~M~~~R----~y 192 (596)
..++|+..+++|+.+..... ..... .++.+|.++-+.-...+ . ..+-.||.. +.+|.+ ++ ++..+ .+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~-~E~f~~~i~--~P~~~~~~~~~ 146 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS-SERFKEFIP--LPCGNSDSVDY 146 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc-cceEeeeee--cCccccccccc
Confidence 57899999999999874321 11222 45568887776533221 1 268899998 899985 43 44332 24
Q ss_pred cEEEEccCCcEEEEcCCCC-CcEEEe-CC---CCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcE
Q 035640 193 STQVTLPDGGFIVVGGRGA-FSYEYI-PP---EGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNL 267 (596)
Q Consensus 193 ~s~~~L~dG~VyViGG~~~-~~~E~y-P~---~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~I 267 (596)
.....+ +|++-++.-... ...|+| -+ ..+|.+ ...+++.... + .....+ ......+|+|
T Consensus 147 ~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k-~~~i~~~~~~-~------------~~~~~~-~~~~~~~g~I 210 (230)
T TIGR01640 147 LSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSK-LFTVPIPPLP-D------------LVDDNF-LSGFTDKGEI 210 (230)
T ss_pred eEEEEE-CCEEEEEEecCCCCcEEEEEECCCCCCceeE-EEEEcCcchh-h------------hhhhee-EeEEeeCCEE
Confidence 556667 799888765432 347777 22 334752 2222221000 0 000112 2345678998
Q ss_pred EEEecc---e-eEEecCCCC
Q 035640 268 FIFSNN---R-SILLDPKAN 283 (596)
Q Consensus 268 fv~Gg~---~-~e~yDp~t~ 283 (596)
.+.... . ..+||+.+|
T Consensus 211 ~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 211 VLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEeCCCCceEEEEEeccCC
Confidence 887653 2 567888764
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.84 E-value=32 Score=35.78 Aligned_cols=92 Identities=13% Similarity=0.012 Sum_probs=44.4
Q ss_pred EEEEeCCC-CCEEeCcCCCcc-ccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccC
Q 035640 123 SVLFDFET-SELTALKLQTDT-WCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPD 200 (596)
Q Consensus 123 ~~~yDp~t-~~w~~l~~~~~~-fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~d 200 (596)
...||..+ .+++.+...... ....-++-+||+.+.+|+.. ...+..|+.....++..... .+.+......+.-+|
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~-~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAE-SPLPGSPTHISTDHQ 90 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeee-ecCCCCceEEEECCC
Confidence 56667653 355544322111 11122345688876665543 25577777641345543321 222222223555668
Q ss_pred CcEEEEcCCCCCcEEEe
Q 035640 201 GGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 201 G~VyViGG~~~~~~E~y 217 (596)
|+.+.+.......+-+|
T Consensus 91 g~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 91 GRFLFSASYNANCVSVS 107 (330)
T ss_pred CCEEEEEEcCCCeEEEE
Confidence 87555555444455555
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.77 E-value=50 Score=39.28 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=71.9
Q ss_pred CCCcEEEEecce--eEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccc
Q 035640 263 PDGNLFIFSNNR--SILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSET 340 (596)
Q Consensus 263 ~dG~Ifv~Gg~~--~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 340 (596)
.++.+++.|+.+ ..+||..+......+ .. .. .-.++.+. ..+++.+++|+.+
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~-~~----~v~~v~~~---------~~~g~~latgs~d--------- 639 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTI---KT-KA----NICCVQFP---------SESGRSLAFGSAD--------- 639 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec-CC----CeEEEEEe---------CCCCCEEEEEeCC---------
Confidence 478888888764 567888765533222 11 10 11122211 1357888888754
Q ss_pred cccccCCCCceEEEEeeCCCCceEeecCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCC-CC
Q 035640 341 KKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS-RQ 419 (596)
Q Consensus 341 ~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~-g~ 419 (596)
..+..+|+........... .+ ......+...++..++.++.+. ++-+||..+.. +.
T Consensus 640 --------g~I~iwD~~~~~~~~~~~~-~h-~~~V~~v~f~~~~~lvs~s~D~-------------~ikiWd~~~~~~~~ 696 (793)
T PLN00181 640 --------HKVYYYDLRNPKLPLCTMI-GH-SKTVSYVRFVDSSTLVSSSTDN-------------TLKLWDLSMSISGI 696 (793)
T ss_pred --------CeEEEEECCCCCccceEec-CC-CCCEEEEEEeCCCEEEEEECCC-------------EEEEEeCCCCcccc
Confidence 2355677652211111111 11 1112234455888888887541 56889976531 11
Q ss_pred ceEEecCCCcccccceEEEEcCCCcEEEecCCCC
Q 035640 420 RFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 420 ~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
.|..+..............+-++|+.+++|+...
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 2333222211111122344678999999998654
No 66
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.21 E-value=8.1 Score=40.48 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCccccCCCCCceEeccCCCcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCC
Q 035640 50 GNKIAETGYNGKWELVSENSGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFE 129 (596)
Q Consensus 50 ~~~~~~~~~~g~W~~v~~~~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~ 129 (596)
|+-+--...-.+|+.+.....-+-..+..+ ++|++++++.. | .....+||-
T Consensus 124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~-~dG~~vavs~~-----------G-----------------~~~~s~~~G 174 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSETSGSINDITRS-SDGRYVAVSSR-----------G-----------------NFYSSWDPG 174 (302)
T ss_dssp --EEEESSTTSSEEEEE-S----EEEEEE--TTS-EEEEETT-----------S-----------------SEEEEE-TT
T ss_pred CcEEEeCCCCCCeeEcccCCcceeEeEEEC-CCCcEEEEECc-----------c-----------------cEEEEecCC
Confidence 443344445559999765433333334445 89998888742 1 124567888
Q ss_pred CCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEe-CCCCCceeecCcCCCCccc-ccEEEEccCCcEEEEc
Q 035640 130 TSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLS-TCDGCDWREYPTALADPRW-YSTQVTLPDGGFIVVG 207 (596)
Q Consensus 130 t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fd-P~~t~~W~~~~~~M~~~R~-y~s~~~L~dG~VyViG 207 (596)
...|++.......+-....+.+|+.++++. .. + .+++=+ +....+|.+...+.....+ +..++--.++.++++|
T Consensus 175 ~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G-g--~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 175 QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG-G--QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp -SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT-T--EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE
T ss_pred CccceEEccCccceehhceecCCCCEEEEe-CC-c--EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe
Confidence 888998876665665566677888887764 21 1 133222 3325678773222323333 4667777789999999
Q ss_pred CCC
Q 035640 208 GRG 210 (596)
Q Consensus 208 G~~ 210 (596)
|..
T Consensus 251 g~G 253 (302)
T PF14870_consen 251 GSG 253 (302)
T ss_dssp STT
T ss_pred CCc
Confidence 974
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.83 E-value=37 Score=35.30 Aligned_cols=68 Identities=10% Similarity=-0.062 Sum_probs=36.8
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCCc-eeecCcCCCCcccccEEEEccCCcEEEEcCCCCCcEEEe
Q 035640 147 GGLTADGDLVSTGGFGGGANTVRYLSTCDGCD-WREYPTALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 147 ~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~-W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~y 217 (596)
.++.+||+.+.+..+. ...+.+||.. ++. ..+....+.....-++++.-+||+.+.+.......+.+|
T Consensus 85 i~~~~~g~~l~v~~~~--~~~v~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 85 ISTDHQGRFLFSASYN--ANCVSVSPLD-KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred EEECCCCCEEEEEEcC--CCeEEEEEEC-CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 3456788877666553 3567788764 221 111111122222234555667887666666655677777
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.18 E-value=34 Score=34.10 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=45.3
Q ss_pred EEEEeCCCCCEEe-CcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 123 SVLFDFETSELTA-LKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 123 ~~~yDp~t~~w~~-l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
..+||..+.+... +...... ....+.++|+.+.+.+..+ ..+.+||.. +.+-.. . +.....-.+.+.-+||
T Consensus 55 v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~--~~l~~~d~~-~~~~~~--~-~~~~~~~~~~~~~~dg 126 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD--NLVTVIDIE-TRKVLA--E-IPVGVEPEGMAVSPDG 126 (300)
T ss_pred EEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC--CeEEEEECC-CCeEEe--E-eeCCCCcceEEECCCC
Confidence 5678888776654 2221221 1234556777554433222 468999987 443211 1 2212112345556789
Q ss_pred cEEEEcCCCCCcEEEe
Q 035640 202 GFIVVGGRGAFSYEYI 217 (596)
Q Consensus 202 ~VyViGG~~~~~~E~y 217 (596)
++++++.........|
T Consensus 127 ~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 127 KIVVNTSETTNMAHFI 142 (300)
T ss_pred CEEEEEecCCCeEEEE
Confidence 9988876544333334
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.97 E-value=19 Score=35.89 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=78.6
Q ss_pred CCCcEEEEecceeEEecCCCCeEEEeeccccCCC--CCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccc
Q 035640 263 PDGNLFIFSNNRSILLDPKANKVVREFPILTGGS--RNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSET 340 (596)
Q Consensus 263 ~dG~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~~~--R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 340 (596)
.+|++|+.......++|+.++++. .+...+... ...|. ..++ ..+|+||+.--.......
T Consensus 50 ~~g~l~v~~~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~N-D~~v------------d~~G~ly~t~~~~~~~~~---- 111 (246)
T PF08450_consen 50 PDGRLYVADSGGIAVVDPDTGKVT-VLADLPDGGVPFNRPN-DVAV------------DPDGNLYVTDSGGGGASG---- 111 (246)
T ss_dssp TTSEEEEEETTCEEEEETTTTEEE-EEEEEETTCSCTEEEE-EEEE-------------TTS-EEEEEECCBCTTC----
T ss_pred cCCEEEEEEcCceEEEecCCCcEE-EEeeccCCCcccCCCc-eEEE------------cCCCCEEEEecCCCcccc----
Confidence 589999998887888899999886 565543211 11111 1122 147888875321100100
Q ss_pred cccccCCCCceEEEEeeCCCCceEee--cCCCCccccceEEeCCCeE-EEEcCCCCCCCCCCCCCCCCcccEEEcCCCCC
Q 035640 341 KKQFFPALQDCGRIDITKPNAVWKKE--RMPSPRVMGDMVILPTEDI-LLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS 417 (596)
Q Consensus 341 ~~~~~~a~~s~~~id~~~~~~~W~~~--~M~~~R~~~~avvLpdG~V-~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~ 417 (596)
.....+.++++. .+.+.. .|..+ .+ .+.-+||+. |+.--. ...+..||++.+.
T Consensus 112 -----~~~g~v~~~~~~---~~~~~~~~~~~~p--NG-i~~s~dg~~lyv~ds~-------------~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 112 -----IDPGSVYRIDPD---GKVTVVADGLGFP--NG-IAFSPDGKTLYVADSF-------------NGRIWRFDLDADG 167 (246)
T ss_dssp -----GGSEEEEEEETT---SEEEEEEEEESSE--EE-EEEETTSSEEEEEETT-------------TTEEEEEEEETTT
T ss_pred -----ccccceEEECCC---CeEEEEecCcccc--cc-eEECCcchheeecccc-------------cceeEEEeccccc
Confidence 000345666653 344433 44433 22 355789974 443221 1246788887652
Q ss_pred CCceE---EecCCCcccccceEEEEcCCCcEEEecCCCCCccccCCCCCCcceEEEEcCC
Q 035640 418 RQRFK---ELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPP 474 (596)
Q Consensus 418 g~~Wt---~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~~~~~~~~~p~~~~vE~y~Pp 474 (596)
+ +++ .+........+.--.++-.+|+|||+.-. ..+|.+|+|.
T Consensus 168 ~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------~~~I~~~~p~ 213 (246)
T PF08450_consen 168 G-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------GGRIVVFDPD 213 (246)
T ss_dssp C-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-------------TTEEEEEETT
T ss_pred c-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-------------CCEEEEECCC
Confidence 2 232 22222222222333445789999998321 1267788776
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.93 E-value=23 Score=34.55 Aligned_cols=138 Identities=15% Similarity=0.203 Sum_probs=72.2
Q ss_pred cCCCcEEEE-ecceeEEecCCCCe--EEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccc
Q 035640 262 SPDGNLFIF-SNNRSILLDPKANK--VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFS 338 (596)
Q Consensus 262 ~~dG~Ifv~-Gg~~~e~yDp~t~~--w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 338 (596)
..+|+||+. +.....+||..+++ |...+ +. +. ....+. .+++||+....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~--~~---~~~~~~------------~~~~v~v~~~~-------- 85 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PG--PI---SGAPVV------------DGGRVYVGTSD-------- 85 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC---SS--CG---GSGEEE------------ETTEEEEEETT--------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cc--cc---cceeee------------cccccccccce--------
Confidence 367888887 44567889998876 43222 22 11 111111 47888876531
Q ss_pred cccccccCCCCceEEEEeeCCCCceEe-e-cCCCCccccce-EEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCC
Q 035640 339 ETKKQFFPALQDCGRIDITKPNAVWKK-E-RMPSPRVMGDM-VILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRG 415 (596)
Q Consensus 339 ~~~~~~~~a~~s~~~id~~~~~~~W~~-~-~M~~~R~~~~a-vvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t 415 (596)
+.+..+|..+..-.|+. . ..+..+..... ..+-++++|+ +... ..+.++|+++
T Consensus 86 ----------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------g~l~~~d~~t 141 (238)
T PF13360_consen 86 ----------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSS-------------GKLVALDPKT 141 (238)
T ss_dssp ----------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETC-------------SEEEEEETTT
T ss_pred ----------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-Eecc-------------CcEEEEecCC
Confidence 24566786655668994 4 33333322222 2232445544 4322 1467899987
Q ss_pred CCCCceEEecCCCcc-----ccc-ceEEEEcCCCcEEEecCCC
Q 035640 416 PSRQRFKELAAGTIP-----RMY-HSSSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 416 ~~g~~Wt~~a~~~~~-----R~y-hs~a~LlpDG~Vlv~GG~~ 452 (596)
.. ..|+.-...+.. +.. ....+++.+|+||++.+..
T Consensus 142 G~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 142 GK-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp TE-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred Cc-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 61 257653333211 111 1234555678999988765
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.54 E-value=48 Score=35.24 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=65.6
Q ss_pred cCCCcEEEEecc-eeEEecCCCCe--EEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccc
Q 035640 262 SPDGNLFIFSNN-RSILLDPKANK--VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFS 338 (596)
Q Consensus 262 ~~dG~Ifv~Gg~-~~e~yDp~t~~--w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 338 (596)
+.++.||+.... ...+||+++++ |... .. .+ ...++ .+++||+....
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~----~~--~~p~~-------------~~~~vyv~~~~-------- 288 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVLWKRD---AS----SY--QGPAV-------------DDNRLYVTDAD-------- 288 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEEEeec---cC----Cc--cCceE-------------eCCEEEEECCC--------
Confidence 347888886533 46778988765 4321 11 11 11111 47888886431
Q ss_pred cccccccCCCCceEEEEeeCCCCceEeecCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCC
Q 035640 339 ETKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSR 418 (596)
Q Consensus 339 ~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g 418 (596)
..+..+|..+....|+...+.. +.... .++.+++||+.+ .+ | .+.++|+++.+
T Consensus 289 ----------G~l~~~d~~tG~~~W~~~~~~~-~~~ss-p~i~g~~l~~~~-~~-G------------~l~~~d~~tG~- 341 (377)
T TIGR03300 289 ----------GVVVALDRRSGSELWKNDELKY-RQLTA-PAVVGGYLVVGD-FE-G------------YLHWLSREDGS- 341 (377)
T ss_pred ----------CeEEEEECCCCcEEEccccccC-Ccccc-CEEECCEEEEEe-CC-C------------EEEEEECCCCC-
Confidence 1355677654445787654432 22232 334577777643 21 1 35678877651
Q ss_pred CceEEecCCCcccccceEEEEcCCCcEEEecCC
Q 035640 419 QRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 419 ~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
..|+.- .......-+-++ .|+++|+.+.+
T Consensus 342 ~~~~~~--~~~~~~~~sp~~--~~~~l~v~~~d 370 (377)
T TIGR03300 342 FVARLK--TDGSGIASPPVV--VGDGLLVQTRD 370 (377)
T ss_pred EEEEEE--cCCCccccCCEE--ECCEEEEEeCC
Confidence 134321 111112222233 38898887654
No 72
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=86.36 E-value=40 Score=34.19 Aligned_cols=218 Identities=17% Similarity=0.203 Sum_probs=109.2
Q ss_pred cceeEEEEeCCCCCEEeCcCC--CccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCccccc---
Q 035640 119 CWCHSVLFDFETSELTALKLQ--TDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYS--- 193 (596)
Q Consensus 119 ~~~~~~~yDp~t~~w~~l~~~--~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~--- 193 (596)
++.++.+||..+++=.|+... ++.--....+-.||+++.+||.+ -.++++|-. . +...|-|.
T Consensus 59 ~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD---gt~kIWdlR-~---------~~~qR~~~~~s 125 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED---GTVKIWDLR-S---------LSCQRNYQHNS 125 (311)
T ss_pred cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC---ceEEEEecc-C---------cccchhccCCC
Confidence 456789999988765444321 10001122345699999999965 357778865 2 22223222
Q ss_pred ---EEEEccCCcEEEEcCCCCCcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEE
Q 035640 194 ---TQVTLPDGGFIVVGGRGAFSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFI 269 (596)
Q Consensus 194 ---s~~~L~dG~VyViGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv 269 (596)
+++.-++.-=+++|- .+..+.+| -.++.-.. ..+|-. .+ .--...+.+||++.+
T Consensus 126 pVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c~~--~liPe~-~~------------------~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGD-QSGNIRVWDLGENSCTH--ELIPED-DT------------------SIQSLTVMPDGSMLA 183 (311)
T ss_pred CcceEEecCCcceEEeec-CCCcEEEEEccCCcccc--ccCCCC-Cc------------------ceeeEEEcCCCcEEE
Confidence 334444444444443 33446666 44442221 111110 00 001356789999999
Q ss_pred EecceeEEe--cCCCCeEEEeeccccC-CCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccC
Q 035640 270 FSNNRSILL--DPKANKVVREFPILTG-GSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFP 346 (596)
Q Consensus 270 ~Gg~~~e~y--Dp~t~~w~~~lp~mp~-~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~ 346 (596)
.+++..-+| +.-+.+-...+-|+.. ..++ ..+...+|. -++|.++.-+++
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C~lS----------Pd~k~lat~ssd--------------- 236 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHN--GHILRCLLS----------PDVKYLATCSSD--------------- 236 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheeccc--ceEEEEEEC----------CCCcEEEeecCC---------------
Confidence 998765554 3333322122222210 0111 012222221 256666665544
Q ss_pred CCCceEEEEeeCCCCceEee-cC-CCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCC
Q 035640 347 ALQDCGRIDITKPNAVWKKE-RM-PSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGP 416 (596)
Q Consensus 347 a~~s~~~id~~~~~~~W~~~-~M-~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~ 416 (596)
.+|.+.+.. +- ...+ .+ ...|..-+.+--.||+.+|.|+.+. .+-+||++++
T Consensus 237 --ktv~iwn~~--~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~-------------~~rlW~~~~~ 290 (311)
T KOG0315|consen 237 --KTVKIWNTD--DF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH-------------TARLWDLSAG 290 (311)
T ss_pred --ceEEEEecC--Cc-eeeEEEeecCCceEEeeeeccCccEEEecCCCC-------------ceeecccccC
Confidence 234444332 11 2333 22 2336655556677999999888651 5678998887
No 73
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=85.79 E-value=61 Score=35.74 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred EEeCCCCCEEeCcCC--Ccccccc-Cee--cCCCcEEEEcCCCCCC--Ce-----------EEEEeCCCCCceeecCcCC
Q 035640 125 LFDFETSELTALKLQ--TDTWCSS-GGL--TADGDLVSTGGFGGGA--NT-----------VRYLSTCDGCDWREYPTAL 186 (596)
Q Consensus 125 ~yDp~t~~w~~l~~~--~~~fc~~-~~~--l~dG~ilv~GG~~~g~--~~-----------v~~fdP~~t~~W~~~~~~M 186 (596)
.++|.-+.|..+... ..+.|.+ ++. ..||.||.-|=..+|. +. ...+|.. ...|+.. .|
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~-~~~~tP~--~v 166 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDY-ELESTPF--KV 166 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchh-hcccCCc--ee
Confidence 688888888755433 3455652 222 3489999999544431 11 1122221 1122211 12
Q ss_pred CC--------------cccccEEEEccCCcEEEEcCC
Q 035640 187 AD--------------PRWYSTQVTLPDGGFIVVGGR 209 (596)
Q Consensus 187 ~~--------------~R~y~s~~~L~dG~VyViGG~ 209 (596)
+. .-|..+++...||+||..|..
T Consensus 167 ~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~ 203 (476)
T COG5184 167 PGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF 203 (476)
T ss_pred eccccccCChheEEeecCCceEEEEccCCcEEEecCc
Confidence 22 236778888889999999974
No 74
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=84.75 E-value=1.3 Score=48.51 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=82.8
Q ss_pred CccccCCCCCceEeccCC----------Ccccceeeee-ccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCcccc
Q 035640 51 NKIAETGYNGKWELVSEN----------SGVSAMHAIL-LPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDC 119 (596)
Q Consensus 51 ~~~~~~~~~g~W~~v~~~----------~~~~a~~~~l-l~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~ 119 (596)
.-|++++.+-.|+.+... .....-|..+ ++.+.=||++||++ |...
T Consensus 230 q~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~---------------------- 286 (723)
T KOG2437|consen 230 QYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQD---------------------- 286 (723)
T ss_pred hhhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchh----------------------
Confidence 346688888999887532 2333344444 44455899999987 3210
Q ss_pred ceeEEEEeCCCCCEEeCcCCC----ccccccCeec-CCCcEEEEcCCCC--------CCCeEEEEeCCCCCceeecCcCC
Q 035640 120 WCHSVLFDFETSELTALKLQT----DTWCSSGGLT-ADGDLVSTGGFGG--------GANTVRYLSTCDGCDWREYPTAL 186 (596)
Q Consensus 120 ~~~~~~yDp~t~~w~~l~~~~----~~fc~~~~~l-~dG~ilv~GG~~~--------g~~~v~~fdP~~t~~W~~~~~~M 186 (596)
.+..-.|+-..|.|+-+...+ .+-|+-.+.- ...++|..|-+.+ +...++.||-. ++.|.-+. |
T Consensus 287 l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~-~~~W~~ls--~ 363 (723)
T KOG2437|consen 287 LADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID-TNTWMLLS--E 363 (723)
T ss_pred HHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC-CceeEEec--c
Confidence 112345677778899876543 3346433221 2358999987642 34678999998 89998773 4
Q ss_pred CCc-------ccccEEEEccC-CcEEEEcCCC
Q 035640 187 ADP-------RWYSTQVTLPD-GGFIVVGGRG 210 (596)
Q Consensus 187 ~~~-------R~y~s~~~L~d-G~VyViGG~~ 210 (596)
... -.-|.+++-.+ |-|||.||+.
T Consensus 364 dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 364 DTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred cccccCCcceeecceeeEecCcceEEEecCee
Confidence 433 23455566532 3499999973
No 75
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=82.63 E-value=51 Score=35.12 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred cceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEEeCcCCCccccccCeecC
Q 035640 72 SAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTALKLQTDTWCSSGGLTA 151 (596)
Q Consensus 72 ~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~ 151 (596)
..|+.+.+ ...||++++.. | .+.+||..|...+.++.+....+...++..
T Consensus 67 ~~~~F~al-~gskIv~~d~~-----------~------------------~t~vyDt~t~av~~~P~l~~pk~~pisv~V 116 (342)
T PF07893_consen 67 WSMDFFAL-HGSKIVAVDQS-----------G------------------RTLVYDTDTRAVATGPRLHSPKRCPISVSV 116 (342)
T ss_pred ceeEEEEe-cCCeEEEEcCC-----------C------------------CeEEEECCCCeEeccCCCCCCCcceEEEEe
Confidence 35666666 78899988642 1 268999999999988887655444444445
Q ss_pred CCcEEEEcCCC
Q 035640 152 DGDLVSTGGFG 162 (596)
Q Consensus 152 dG~ilv~GG~~ 162 (596)
.++||+.....
T Consensus 117 G~~LY~m~~~~ 127 (342)
T PF07893_consen 117 GDKLYAMDRSP 127 (342)
T ss_pred CCeEEEeeccC
Confidence 77799987653
No 76
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=81.97 E-value=63 Score=32.88 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=36.1
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEE-EccCCcEEEEcCCCCCcEEEe
Q 035640 149 LTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQV-TLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 149 ~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~-~L~dG~VyViGG~~~~~~E~y 217 (596)
..+|++.|+++|+ ..||+||-. ++.=..+.. ....+-.-+++ --.||+-...||.++ ++.+|
T Consensus 48 iTpdk~~LAaa~~----qhvRlyD~~-S~np~Pv~t-~e~h~kNVtaVgF~~dgrWMyTgseDg-t~kIW 110 (311)
T KOG0315|consen 48 ITPDKKDLAAAGN----QHVRLYDLN-SNNPNPVAT-FEGHTKNVTAVGFQCDGRWMYTGSEDG-TVKIW 110 (311)
T ss_pred EcCCcchhhhccC----CeeEEEEcc-CCCCCceeE-EeccCCceEEEEEeecCeEEEecCCCc-eEEEE
Confidence 5679999999986 579999986 443111111 11122333333 233788888888664 34444
No 77
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=79.14 E-value=27 Score=37.15 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=69.9
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCCC---------cEEEe---
Q 035640 150 TADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGAF---------SYEYI--- 217 (596)
Q Consensus 150 l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~---------~~E~y--- 217 (596)
+.+.+|+.++.. ..+-+||+. +..-..+|. |..+..++-++.+ +++|||+...... ..|.+
T Consensus 74 l~gskIv~~d~~----~~t~vyDt~-t~av~~~P~-l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 74 LHGSKIVAVDQS----GRTLVYDTD-TRAVATGPR-LHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred ecCCeEEEEcCC----CCeEEEECC-CCeEeccCC-CCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccc
Confidence 357788888654 337799998 887777775 8888888877777 6779999875321 55654
Q ss_pred C------CCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCC-cEEEEec-c--eeEEecCCCCeEEE
Q 035640 218 P------PEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDG-NLFIFSN-N--RSILLDPKANKVVR 287 (596)
Q Consensus 218 P------~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG-~Ifv~Gg-~--~~e~yDp~t~~w~~ 287 (596)
+ ....|. |..+|...-..+.. .....=..+++.|| .|||.-. . ....||..+.+|.+
T Consensus 147 ~~~~~~~~~~~w~--W~~LP~PPf~~~~~-----------~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 147 PPPDDPSPEESWS--WRSLPPPPFVRDRR-----------YSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred cccccccCCCcce--EEcCCCCCccccCC-----------cccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 1 123343 33333221100000 00000123344444 7999443 3 57889999999973
No 78
>PTZ00421 coronin; Provisional
Probab=75.73 E-value=1.1e+02 Score=34.35 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=33.0
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCc
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCD 178 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~ 178 (596)
...+||..+++....-..+..........+||.++++|+.+ +.+++||+. +.+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r-sg~ 201 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR-DGT 201 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC-CCc
Confidence 46789988775432211122122223455799999999864 579999997 543
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=73.65 E-value=51 Score=35.04 Aligned_cols=107 Identities=11% Similarity=0.150 Sum_probs=56.2
Q ss_pred EcCCCcEEEEecc-eeEEecCCCCe--EEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccc
Q 035640 261 LSPDGNLFIFSNN-RSILLDPKANK--VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYF 337 (596)
Q Consensus 261 ~~~dG~Ifv~Gg~-~~e~yDp~t~~--w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 337 (596)
++.+++||+.+.. ...+||..+++ |...++. +. .++.+. .+++||+... +
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-----~~---~~~p~v------------~~~~v~v~~~-~------ 114 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-----RL---SGGVGA------------DGGLVFVGTE-K------ 114 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-----Cc---ccceEE------------cCCEEEEEcC-C------
Confidence 3447788877654 57789987765 5432221 11 111111 3667765432 2
Q ss_pred ccccccccCCCCceEEEEeeCCCCceEeecCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCC
Q 035640 338 SETKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS 417 (596)
Q Consensus 338 ~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~ 417 (596)
..+..+|+...+-.|+.. +... ... +.++.+++||+..+.. .+.++|+++.+
T Consensus 115 -----------g~l~ald~~tG~~~W~~~-~~~~-~~~-~p~v~~~~v~v~~~~g--------------~l~a~d~~tG~ 166 (377)
T TIGR03300 115 -----------GEVIALDAEDGKELWRAK-LSSE-VLS-PPLVANGLVVVRTNDG--------------RLTALDAATGE 166 (377)
T ss_pred -----------CEEEEEECCCCcEeeeec-cCce-eec-CCEEECCEEEEECCCC--------------eEEEEEcCCCc
Confidence 134567765445578765 1111 112 2334578887754321 35788987652
Q ss_pred CCceEE
Q 035640 418 RQRFKE 423 (596)
Q Consensus 418 g~~Wt~ 423 (596)
..|+.
T Consensus 167 -~~W~~ 171 (377)
T TIGR03300 167 -RLWTY 171 (377)
T ss_pred -eeeEE
Confidence 25764
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=72.45 E-value=91 Score=29.72 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccc-cEEEEccCCcEEEEcCCCCCcEEEe
Q 035640 149 LTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWY-STQVTLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 149 ~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y-~s~~~L~dG~VyViGG~~~~~~E~y 217 (596)
..++++++++|+.+ ..+.+||.. +.+-... +...... ......++++.+++++.++ .+.+|
T Consensus 17 ~~~~~~~l~~~~~~---g~i~i~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~ 78 (289)
T cd00200 17 FSPDGKLLATGSGD---GTIKVWDLE-TGELLRT---LKGHTGPVRDVAASADGTYLASGSSDK-TIRLW 78 (289)
T ss_pred EcCCCCEEEEeecC---cEEEEEEee-CCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCC-eEEEE
Confidence 44577888888753 467888875 4321111 1111111 2445566777788877643 45555
No 81
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=71.08 E-value=1.2e+02 Score=31.39 Aligned_cols=108 Identities=12% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCCEEEEEcCccCCccccccccccccCCCCceEE--EEeeCCCCceEeecCCCCccccceEEeC--CCeEEEEcCCCCCC
Q 035640 320 TKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGR--IDITKPNAVWKKERMPSPRVMGDMVILP--TEDILLLNGAKTGT 395 (596)
Q Consensus 320 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~--id~~~~~~~W~~~~M~~~R~~~~avvLp--dG~V~vvGG~~~g~ 395 (596)
.++.||++||..-.+.. . .....| +|+-..++.-+-.-++..-...++++.+ ..+.+|+||.....
T Consensus 163 r~D~VYilGGHsl~sd~---------R-pp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 163 RNDCVYILGGHSLESDS---------R-PPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred cCceEEEEccEEccCCC---------C-CCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 58999999997521110 0 112233 3333223333222344444444444432 25678899986322
Q ss_pred CCCCCCCCCCc-------ccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEe
Q 035640 396 SGWNDAEDPNL-------VPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVA 448 (596)
Q Consensus 396 ~g~~~~~~~~~-------s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~ 448 (596)
+. +.... .+++=.-+++ +|+. .....|...+..+= .|.+|++
T Consensus 233 QK----Rm~C~~V~Ldd~~I~ie~~E~P---~Wt~--dI~hSrtWFGgs~G--~G~~Li~ 281 (337)
T PF03089_consen 233 QK----RMECNTVSLDDDGIHIEEREPP---EWTG--DIKHSRTWFGGSMG--KGSALIG 281 (337)
T ss_pred ee----eeeeeEEEEeCCceEeccCCCC---CCCC--CcCcCccccccccC--CceEEEE
Confidence 10 00001 2333344556 7863 45556666655433 6776664
No 82
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=67.78 E-value=16 Score=39.03 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=38.7
Q ss_pred eCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCCC
Q 035640 380 LPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 380 LpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
-|+|+.++.|+.+. ++-+||+.|. +++..+.--+..-.+...-|||+.++.|+-.+.
T Consensus 124 sp~g~~l~tGsGD~-------------TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDT-------------TVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred cCCCceEEecCCCc-------------eEEeeccCCC-----CcceeecCCccEEEEEEECCCcchhhccccCCe
Confidence 47999999987541 6789999997 222233333333344556799999999986543
No 83
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=65.14 E-value=10 Score=38.39 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=35.9
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEE-eCCCCCceeecCcCCCCc----ccccEEEEccCCcEEE
Q 035640 149 LTADGDLVSTGGFGGGANTVRYL-STCDGCDWREYPTALADP----RWYSTQVTLPDGGFIV 205 (596)
Q Consensus 149 ~l~dG~ilv~GG~~~g~~~v~~f-dP~~t~~W~~~~~~M~~~----R~y~s~~~L~dG~VyV 205 (596)
.+.+|+++++....++...+.++ ......+|..... +... =.|++++.+.||+|+|
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~-i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKT-IDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEE-EEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEE-EeCCCCCcEECCeeEEeCCCcCCC
Confidence 36789999988743333333332 2222678986532 3333 3699999999999987
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=64.99 E-value=1.1e+02 Score=31.14 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCCcEEEEcCCCCCcEEEe-CCCCCCCCCccc
Q 035640 151 ADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYI-PPEGQSNKSPVF 229 (596)
Q Consensus 151 ~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~y-P~~~~w~~~~~~ 229 (596)
.|..||-. . ..+.||.+|-. +.+-.. .|..+.---++.+-.||+|+++- .+.++-++ ++.=.- -+...
T Consensus 154 eD~~iLSS--a--dd~tVRLWD~r-Tgt~v~---sL~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~-lKs~k 222 (334)
T KOG0278|consen 154 EDKCILSS--A--DDKTVRLWDHR-TGTEVQ---SLEFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGL-LKSYK 222 (334)
T ss_pred cCceEEee--c--cCCceEEEEec-cCcEEE---EEecCCCCcceeeccCCCEEEEe--cCceeEEeccccccc-eeecc
Confidence 35666655 1 13679999987 665332 24444433456677799999884 22345555 322100 00112
Q ss_pred ccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeE--EecCCCCeE
Q 035640 230 FPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSI--LLDPKANKV 285 (596)
Q Consensus 230 ~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e--~yDp~t~~w 285 (596)
+|. |. -.+.+-|+-.+||.||.+.+ .||..++.-
T Consensus 223 ~P~---------------------nV-~SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 223 MPC---------------------NV-ESASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred Ccc---------------------cc-ccccccCCCceEEecCcceEEEEEeccCCce
Confidence 222 11 12446688899999998754 678888764
No 85
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.05 E-value=53 Score=34.07 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=62.3
Q ss_pred cCCCCCceEeccCC-CcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCE
Q 035640 55 ETGYNGKWELVSEN-SGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSEL 133 (596)
Q Consensus 55 ~~~~~g~W~~v~~~-~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w 133 (596)
++....+|..+... .+.+ .++... .+.+||+-|....+ ++ .......||.++++|
T Consensus 21 yd~~~~qW~~~g~~i~G~V-~~l~~~-~~~~Llv~G~ft~~-------~~---------------~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 21 YDTDNSQWSSPGNGISGTV-TDLQWA-SNNQLLVGGNFTLN-------GT---------------NSSNLATYDFKNQTW 76 (281)
T ss_pred EECCCCEeecCCCCceEEE-EEEEEe-cCCEEEEEEeeEEC-------CC---------------CceeEEEEecCCCee
Confidence 77788899997643 3332 244444 57788877754311 10 023578999999999
Q ss_pred EeCcCCC--ccccccCee---cCCC-cEEEEcCCCCCCCeEEEEeCCCCCceeecC
Q 035640 134 TALKLQT--DTWCSSGGL---TADG-DLVSTGGFGGGANTVRYLSTCDGCDWREYP 183 (596)
Q Consensus 134 ~~l~~~~--~~fc~~~~~---l~dG-~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~ 183 (596)
+.+.... +.--...+. ..|+ .+++.|....+..-+..|| ..+|..+.
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~ 129 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIG 129 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc---CCceEecc
Confidence 9887632 111111111 2244 5666766555667788887 67898774
No 86
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=63.00 E-value=2e+02 Score=30.14 Aligned_cols=241 Identities=15% Similarity=0.198 Sum_probs=94.9
Q ss_pred CCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCc-ccccEEEEccCCcEEEEcC
Q 035640 130 TSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADP-RWYSTQVTLPDGGFIVVGG 208 (596)
Q Consensus 130 t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~-R~y~s~~~L~dG~VyViGG 208 (596)
.+.|..+...++.......++-+.+-+++|-+. .-.+.-| ...+|......+..+ .....++...+.+.||+|-
T Consensus 5 ~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g---~il~T~D--GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~ 79 (302)
T PF14870_consen 5 GNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG---TILKTTD--GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE 79 (302)
T ss_dssp S--EEEEE-S-SS-EEEEEESSSS-EEEEETTT---EEEEESS--TTSS-EE-----S-----EEEEEEEETTEEEEEEE
T ss_pred CCCcEEeecCCCCceEEEEEecCCEEEEEecCC---EEEEECC--CCccccccccCCCccceeeEEEEEecCCceEEEcC
Confidence 456777765554444444555567888887542 1112222 156798764333332 2333344445788999874
Q ss_pred CCCCcEEEe---CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceE-EEcCCCcEEEEecceeEEe-cCCCC
Q 035640 209 RGAFSYEYI---PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFV-YLSPDGNLFIFSNNRSILL-DPKAN 283 (596)
Q Consensus 209 ~~~~~~E~y---P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~-~~~~dG~Ifv~Gg~~~e~y-Dp~t~ 283 (596)
.. . ++ ..-.+|. .+++.... + -.++. ..+.++.+.+++....... .-...
T Consensus 80 ~g---~-ll~T~DgG~tW~----~v~l~~~l---------------p--gs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~ 134 (302)
T PF14870_consen 80 PG---L-LLHTTDGGKTWE----RVPLSSKL---------------P--GSPFGITALGDGSAELAGDRGAIYRTTDGGK 134 (302)
T ss_dssp TT---E-EEEESSTTSS-E----E----TT----------------S--S-EEEEEEEETTEEEEEETT--EEEESSTTS
T ss_pred Cc---e-EEEecCCCCCcE----EeecCCCC---------------C--CCeeEEEEcCCCcEEEEcCCCcEEEeCCCCC
Confidence 21 1 22 1122342 22211000 0 01222 2334566776665533222 22345
Q ss_pred eEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCce
Q 035640 284 KVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVW 363 (596)
Q Consensus 284 ~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W 363 (596)
+|. .+..-. .- +-..+. ...+|++++++-.. .. ....|+. ...|
T Consensus 135 tW~-~~~~~~--~g----s~~~~~----------r~~dG~~vavs~~G--~~---------------~~s~~~G--~~~w 178 (302)
T PF14870_consen 135 TWQ-AVVSET--SG----SINDIT----------RSSDGRYVAVSSRG--NF---------------YSSWDPG--QTTW 178 (302)
T ss_dssp SEE-EEE-S----------EEEEE----------E-TTS-EEEEETTS--SE---------------EEEE-TT---SS-
T ss_pred Cee-EcccCC--cc----eeEeEE----------ECCCCcEEEEECcc--cE---------------EEEecCC--Cccc
Confidence 786 332211 00 101110 12478888777432 21 0112222 4569
Q ss_pred EeecCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccc--eEEEEcC
Q 035640 364 KKERMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYH--SSSVLLP 441 (596)
Q Consensus 364 ~~~~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yh--s~a~Llp 441 (596)
+.-..+..|..-++..-+|+.++++. . | | . ..+....+.+.+|+.- ..++...++ -...-.+
T Consensus 179 ~~~~r~~~~riq~~gf~~~~~lw~~~-~--G--g---------~-~~~s~~~~~~~~w~~~-~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 179 QPHNRNSSRRIQSMGFSPDGNLWMLA-R--G--G---------Q-IQFSDDPDDGETWSEP-IIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp EEEE--SSS-EEEEEE-TTS-EEEEE-T--T--T---------E-EEEEE-TTEEEEE----B-TTSS--S-EEEEEESS
T ss_pred eEEccCccceehhceecCCCCEEEEe-C--C--c---------E-EEEccCCCCccccccc-cCCcccCceeeEEEEecC
Confidence 88866666665657778999998875 1 1 1 0 1111122323377652 233322323 2234468
Q ss_pred CCcEEEecCCC
Q 035640 442 DGTVLVAGSNT 452 (596)
Q Consensus 442 DG~Vlv~GG~~ 452 (596)
++.|+++||..
T Consensus 243 ~~~~wa~gg~G 253 (302)
T PF14870_consen 243 PNEIWAVGGSG 253 (302)
T ss_dssp SS-EEEEESTT
T ss_pred CCCEEEEeCCc
Confidence 99999999875
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=62.50 E-value=1.6e+02 Score=32.46 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=53.8
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
....+|..+++.+.+..... ........+||+.+++....++...+..+|.. +.++..+.. ...++.+.+.-+||
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt~---~g~~~~~~~~SpDG 361 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLTF---EGEQNLGGSITPDG 361 (448)
T ss_pred EEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEec---CCCCCcCeeECCCC
Confidence 45677999998888754321 12223456798866665443445678888987 777765521 23333344556788
Q ss_pred cEEEEcCCCCCcEEE
Q 035640 202 GFIVVGGRGAFSYEY 216 (596)
Q Consensus 202 ~VyViGG~~~~~~E~ 216 (596)
+.++..........+
T Consensus 362 ~~l~~~~~~~g~~~I 376 (448)
T PRK04792 362 RSMIMVNRTNGKFNI 376 (448)
T ss_pred CEEEEEEecCCceEE
Confidence 777665544333344
No 88
>PTZ00421 coronin; Provisional
Probab=62.41 E-value=2.7e+02 Score=31.34 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=14.3
Q ss_pred CcEEEEecc--eeEEecCCCCeEE
Q 035640 265 GNLFIFSNN--RSILLDPKANKVV 286 (596)
Q Consensus 265 G~Ifv~Gg~--~~e~yDp~t~~w~ 286 (596)
+++++.|+. ...+||..+++-.
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEE
Confidence 356666664 3678898877643
No 89
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=61.80 E-value=63 Score=26.84 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=48.5
Q ss_pred CCeeeeCCCCCeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCCceEEEE
Q 035640 484 RPSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEGLHDIIA 563 (596)
Q Consensus 484 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g~~~~~v 563 (596)
.|.|.+.. |..-..|++++|+=+.- .....+|.+ + - ...++... + ...+++
T Consensus 2 ~P~I~~i~-P~~g~~G~~VtI~G~gF-----g~~~~~V~~---g---------~--~~a~v~s~--------s-dt~I~~ 52 (81)
T cd02849 2 TPLIGHVG-PMMGKAGNTVTISGEGF-----GSAPGTVYF---G---------T--TAATVISW--------S-DTRIVV 52 (81)
T ss_pred CCEEeeEc-CCCCCCCCEEEEEEECC-----CCCCcEEEE---C---------C--EEeEEEEE--------C-CCEEEE
Confidence 48888886 88888999988864421 111123322 2 1 22344332 1 258889
Q ss_pred EcCCCCCcCCCcceEEEEEc-CCcCCccEE
Q 035640 564 LAPSSGAVAPPGYYLLYVVY-KGVPSVAMW 592 (596)
Q Consensus 564 ~~P~~~~v~pPG~ymLFv~~-~gvPS~a~~ 592 (596)
++|.. ++|.|-++|.. +|.=|.+.-
T Consensus 53 ~vP~~----~aG~~~V~V~~~~G~~Sn~~~ 78 (81)
T cd02849 53 TVPNV----PAGNYDVTVKTADGATSNGYN 78 (81)
T ss_pred EeCCC----CCceEEEEEEeCCCcccCcEe
Confidence 99954 78999999997 688776543
No 90
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=60.68 E-value=2.1e+02 Score=29.62 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=72.3
Q ss_pred eEEEEeCCCCCEEeCcCC--CccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEcc
Q 035640 122 HSVLFDFETSELTALKLQ--TDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLP 199 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~--~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~ 199 (596)
...+||..+.+-+..-.- .+..| .++-+|.+.+|.|-.+ +++..+|....++.+.. +.+. .-|-.++.-.|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVls--va~s~dn~qivSGSrD---kTiklwnt~g~ck~t~~-~~~~-~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLS--VAFSTDNRQIVSGSRD---KTIKLWNTLGVCKYTIH-EDSH-REWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEE--EEecCCCceeecCCCc---ceeeeeeecccEEEEEe-cCCC-cCcEEEEEEcC
Confidence 357788877643322111 12222 3455788998988654 67788887623333332 2243 34555555555
Q ss_pred CC-cEEEEcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeE--
Q 035640 200 DG-GFIVVGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSI-- 276 (596)
Q Consensus 200 dG-~VyViGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e-- 276 (596)
+. ..+++.+.+.+++.+|-..+. . ++.+ |.....+--.+.+.|||.+.+.||.+.+
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~--------~-l~~~------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNC--------Q-LRTT------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCc--------c-hhhc------------cccccccEEEEEECCCCCEEecCCCCceEE
Confidence 53 555666666677777622211 0 0000 0011122234567899999999998754
Q ss_pred EecCCCCe
Q 035640 277 LLDPKANK 284 (596)
Q Consensus 277 ~yDp~t~~ 284 (596)
++|....+
T Consensus 218 LwdL~~~k 225 (315)
T KOG0279|consen 218 LWDLNEGK 225 (315)
T ss_pred EEEccCCc
Confidence 55655443
No 91
>PRK13684 Ycf48-like protein; Provisional
Probab=60.15 E-value=2.3e+02 Score=29.91 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=43.4
Q ss_pred eCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEE-eCCCCCceeecCcCCCCccc-ccEEEEccCCcEE
Q 035640 127 DFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYL-STCDGCDWREYPTALADPRW-YSTQVTLPDGGFI 204 (596)
Q Consensus 127 Dp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~f-dP~~t~~W~~~~~~M~~~R~-y~s~~~L~dG~Vy 204 (596)
|....+|+++......-........+|+++++|... ..++ +.....+|+....+.....+ ..+++..++++++
T Consensus 200 ~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G-----~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 200 EPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG-----QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred CCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCC-----EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence 344457888765444444445566789999997542 2234 22224689865321111112 2345556688898
Q ss_pred EEcCC
Q 035640 205 VVGGR 209 (596)
Q Consensus 205 ViGG~ 209 (596)
++|..
T Consensus 275 ~~G~~ 279 (334)
T PRK13684 275 AGGGN 279 (334)
T ss_pred EEcCC
Confidence 88764
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.83 E-value=25 Score=28.55 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=30.6
Q ss_pred ecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCCceEEEEEcCCCCCcCCCcc
Q 035640 497 HYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEGLHDIIALAPSSGAVAPPGY 576 (596)
Q Consensus 497 ~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g~~~~~v~~P~~~~v~pPG~ 576 (596)
..|++++++++............+++|-.|.-.+ .....++.-.|+- ...-.-+++|+.|.+ +.||-
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~p---------G~s~~~~~~V~vp~~---a~~G~ 68 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLPP---------GESVTVTFTVTVPAD---AAPGT 68 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-T---------TSEEEEEEEEEE-TT-----SEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCCC---------CCEEEEEEEEECCCC---CCCce
Confidence 4577666655532111111234566666665444 1122222222221 111145777788888 88999
Q ss_pred eEEEEE
Q 035640 577 YLLYVV 582 (596)
Q Consensus 577 ymLFv~ 582 (596)
|.|=+.
T Consensus 69 y~v~~~ 74 (78)
T PF10633_consen 69 YTVTVT 74 (78)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988664
No 93
>PTZ00420 coronin; Provisional
Probab=59.55 E-value=1.6e+02 Score=33.88 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=30.8
Q ss_pred eEEEEeCCCCCEE-eCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC
Q 035640 122 HSVLFDFETSELT-ALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGC 177 (596)
Q Consensus 122 ~~~~yDp~t~~w~-~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~ 177 (596)
...+||..+.+-. .+. ... ........+||.++++++.+ +.+++||+. +.
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~-~V~SlswspdG~lLat~s~D---~~IrIwD~R-sg 199 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPK-KLSSLKWNIKGNLLSGTCVG---KHMHIIDPR-KQ 199 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCC-cEEEEEECCCCCEEEEEecC---CEEEEEECC-CC
Confidence 3678888776522 111 111 12223456799999988753 579999997 54
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=59.19 E-value=4.2e+02 Score=32.92 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=37.6
Q ss_pred eEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCc----------ccc-cceEEEEcCCCcE
Q 035640 377 MVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTI----------PRM-YHSSSVLLPDGTV 445 (596)
Q Consensus 377 avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~----------~R~-yhs~a~LlpDG~V 445 (596)
.++-+||+|||....+ ..+.+||+++. ..+.++.... .+. ......+-+||+|
T Consensus 809 vavd~dG~LYVADs~N-------------~rIrviD~~tg---~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 809 VLCAKDGQIYVADSYN-------------HKIKKLDPATK---RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred eeEeCCCcEEEEECCC-------------CEEEEEECCCC---eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 3456899999986432 26789999987 6655443211 111 1122344689999
Q ss_pred EEecCCCC
Q 035640 446 LVAGSNTH 453 (596)
Q Consensus 446 lv~GG~~~ 453 (596)
||+-.+.+
T Consensus 873 yVaDt~Nn 880 (1057)
T PLN02919 873 FVADTNNS 880 (1057)
T ss_pred EEEECCCC
Confidence 99976544
No 95
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=59.07 E-value=2.4e+02 Score=29.73 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=32.9
Q ss_pred CceEEEEeeCCCCceEee-----cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEE--cCCCCCCCce
Q 035640 349 QDCGRIDITKPNAVWKKE-----RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALY--TPRGPSRQRF 421 (596)
Q Consensus 349 ~s~~~id~~~~~~~W~~~-----~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~Y--DP~t~~g~~W 421 (596)
+++..|++...+.+-+.. .-..||.+ .+-|||+.+++..... + .+.+| |+++. ++
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~---~~s~~g~~l~Va~~~s---------~---~v~vf~~d~~tG---~l 328 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHF---AFSPDGRYLYVANQDS---------N---TVSVFDIDPDTG---KL 328 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEE---EE-TTSSEEEEEETTT---------T---EEEEEEEETTTT---EE
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEE---EEeCCCCEEEEEecCC---------C---eEEEEEEeCCCC---cE
Confidence 455667764333333332 23345653 3468999888876542 1 34555 67777 77
Q ss_pred EEec
Q 035640 422 KELA 425 (596)
Q Consensus 422 t~~a 425 (596)
+.+.
T Consensus 329 ~~~~ 332 (345)
T PF10282_consen 329 TPVG 332 (345)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7654
No 96
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=58.10 E-value=39 Score=36.23 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=35.1
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCc
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCD 178 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~ 178 (596)
.+.+||+.|.+=...-.-+..|--..+-.+||+.++.|-.+ .+|++|||+ +++
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d---g~I~lwdpk-tg~ 190 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD---GSIRLWDPK-TGQ 190 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC---CeEEEecCC-CCC
Confidence 58899998764222222244554445667899999987654 579999997 443
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=57.62 E-value=2.7e+02 Score=30.83 Aligned_cols=219 Identities=14% Similarity=0.238 Sum_probs=107.0
Q ss_pred CCCcEEEEcCCCCCCCeEEEEeCCC-CCceeecCcCCCCccc-ccEEEEccCCc-EEEEcCCCCCcEEEe-CCCCCCCCC
Q 035640 151 ADGDLVSTGGFGGGANTVRYLSTCD-GCDWREYPTALADPRW-YSTQVTLPDGG-FIVVGGRGAFSYEYI-PPEGQSNKS 226 (596)
Q Consensus 151 ~dG~ilv~GG~~~g~~~v~~fdP~~-t~~W~~~~~~M~~~R~-y~s~~~L~dG~-VyViGG~~~~~~E~y-P~~~~w~~~ 226 (596)
+.-.+++++|.+ +.+++|--.. ++. .+. +|...+. -.+++..++|+ +.+.+|+...-+ .| -.+.+-.
T Consensus 223 p~~plllvaG~d---~~lrifqvDGk~N~--~lq-S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~y-syDle~ak~~-- 293 (514)
T KOG2055|consen 223 PTAPLLLVAGLD---GTLRIFQVDGKVNP--KLQ-SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLY-SYDLETAKVT-- 293 (514)
T ss_pred CCCceEEEecCC---CcEEEEEecCccCh--hhe-eeeeccCccceeeecCCCceEEEecccceEEE-Eeeccccccc--
Confidence 456788888875 4466665430 333 222 2555443 23666777998 888888754322 22 1111111
Q ss_pred cccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecceeEEe--cCCCCeEEEeeccccCCCCCCCCCce
Q 035640 227 PVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNRSILL--DPKANKVVREFPILTGGSRNYPASAM 304 (596)
Q Consensus 227 ~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~~e~y--Dp~t~~w~~~lp~mp~~~R~~p~~g~ 304 (596)
...|+. |.. +.. .-.--+.++++..++.|+..+++ ..+|+.|... -.|++.. +
T Consensus 294 -k~~~~~--------g~e-~~~-------~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~KieG~v-------~ 348 (514)
T KOG2055|consen 294 -KLKPPY--------GVE-EKS-------MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKIEGVV-------S 348 (514)
T ss_pred -cccCCC--------Ccc-cch-------hheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eeeccEE-------e
Confidence 001110 000 000 01123668888888888776654 5566666522 1233211 1
Q ss_pred EEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCC--CCceEee-cCCCCccccce-EEe
Q 035640 305 SVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKP--NAVWKKE-RMPSPRVMGDM-VIL 380 (596)
Q Consensus 305 av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~--~~~W~~~-~M~~~R~~~~a-vvL 380 (596)
.... ....-+|+++||.. .+..+|+..+ -.+|..+ .. ++.+ +.-
T Consensus 349 ~~~f---------sSdsk~l~~~~~~G------------------eV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S 396 (514)
T KOG2055|consen 349 DFTF---------SSDSKELLASGGTG------------------EVYVWNLRQNSCLHRFVDDGSV-----HGTSLCIS 396 (514)
T ss_pred eEEE---------ecCCcEEEEEcCCc------------------eEEEEecCCcceEEEEeecCcc-----ceeeeeec
Confidence 1111 01345677787743 2444555432 2456665 43 2222 234
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceE-E----EEcCCCcEEEecCCC
Q 035640 381 PTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSS-S----VLLPDGTVLVAGSNT 452 (596)
Q Consensus 381 pdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~-a----~LlpDG~Vlv~GG~~ 452 (596)
+||..+++|-. .| -+-+||-++ .+..-+|-++.+.---+ + -.-+|+.||..-+..
T Consensus 397 ~ng~ylA~GS~-~G------------iVNIYd~~s----~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 397 LNGSYLATGSD-SG------------IVNIYDGNS----CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred CCCceEEeccC-cc------------eEEEeccch----hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 69997777643 23 357888554 34444444444432111 1 123577777665543
No 98
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=56.01 E-value=1e+02 Score=30.56 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=45.9
Q ss_pred ceEEEEeeCCCCceEeecCCCCccccceEEe-CCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCC
Q 035640 350 DCGRIDITKPNAVWKKERMPSPRVMGDMVIL-PTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGT 428 (596)
Q Consensus 350 s~~~id~~~~~~~W~~~~M~~~R~~~~avvL-pdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~ 428 (596)
...++|+. +.+-+....+. ..++++. ++|++|+..... ..++|+++. +++.+....
T Consensus 23 ~i~~~~~~--~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~---------------~~~~d~~~g---~~~~~~~~~ 79 (246)
T PF08450_consen 23 RIYRVDPD--TGEVEVIDLPG---PNGMAFDRPDGRLYVADSGG---------------IAVVDPDTG---KVTVLADLP 79 (246)
T ss_dssp EEEEEETT--TTEEEEEESSS---EEEEEEECTTSEEEEEETTC---------------EEEEETTTT---EEEEEEEEE
T ss_pred EEEEEECC--CCeEEEEecCC---CceEEEEccCCEEEEEEcCc---------------eEEEecCCC---cEEEEeecc
Confidence 45566654 33333224333 2334455 799999987532 256799999 888877662
Q ss_pred --c-ccccceEEEEcCCCcEEEecCC
Q 035640 429 --I-PRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 429 --~-~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
. +.....-.+..+||++|++-..
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~ 105 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSG 105 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEEC
T ss_pred CCCcccCCCceEEEcCCCCEEEEecC
Confidence 1 2233333556799999998654
No 99
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=54.81 E-value=1.5e+02 Score=32.15 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=50.7
Q ss_pred eeEEEEeCCCCCEE-eCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCC-CcccccEEEEc
Q 035640 121 CHSVLFDFETSELT-ALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALA-DPRWYSTQVTL 198 (596)
Q Consensus 121 ~~~~~yDp~t~~w~-~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~-~~R~y~s~~~L 198 (596)
..+.+||..|++-. .+. ..++ |-...+-.||.++++.-.+ ++++++||. +.+-..-. |. .+-.-.-+.-|
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~-i~S~sfn~dGs~l~TtckD---KkvRv~dpr-~~~~v~e~--~~heG~k~~Raifl 225 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDM-VYSMSFNRDGSLLCTTCKD---KKVRVIDPR-RGTVVSEG--VAHEGAKPARAIFL 225 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCe-EEEEEeccCCceeeeeccc---ceeEEEcCC-CCcEeeec--ccccCCCcceeEEe
Confidence 45889999988743 333 2233 3334556688888876543 789999998 66533221 22 22223446778
Q ss_pred cCCcEEEEcCC
Q 035640 199 PDGGFIVVGGR 209 (596)
Q Consensus 199 ~dG~VyViGG~ 209 (596)
.+|+++..|=+
T Consensus 226 ~~g~i~tTGfs 236 (472)
T KOG0303|consen 226 ASGKIFTTGFS 236 (472)
T ss_pred ccCceeeeccc
Confidence 89998888754
No 100
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=52.05 E-value=3.5e+02 Score=29.52 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=38.2
Q ss_pred eEeecCCCCccc-cceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecC-CCc-ccccceEEEE
Q 035640 363 WKKERMPSPRVM-GDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAA-GTI-PRMYHSSSVL 439 (596)
Q Consensus 363 W~~~~M~~~R~~-~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~-~~~-~R~yhs~a~L 439 (596)
|+..+++..+.. .+.+...|++++++|... . +|-. ++.|++|+.... -.+ .-+| ....
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~--------------v~~s-~D~G~tW~~~~~~~~~~~~ly--~v~f 378 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG--I--------------LLRS-TDGGKSWKRDKGADNIAANLY--SVKF 378 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC--c--------------EEEe-CCCCcceeEccccCCCCccee--EEEE
Confidence 344344433432 333346688999988752 1 2221 346779998653 222 2234 2223
Q ss_pred cCCCcEEEecCC
Q 035640 440 LPDGTVLVAGSN 451 (596)
Q Consensus 440 lpDG~Vlv~GG~ 451 (596)
..+++.|+.|-+
T Consensus 379 ~~~~~g~~~G~~ 390 (398)
T PLN00033 379 FDDKKGFVLGND 390 (398)
T ss_pred cCCCceEEEeCC
Confidence 567999999854
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=49.42 E-value=2.7e+02 Score=29.13 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred CccccceeEEEEeCCCCCEEeCcCCC-ccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCccccc
Q 035640 115 GELDCWCHSVLFDFETSELTALKLQT-DTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYS 193 (596)
Q Consensus 115 ~~~~~~~~~~~yDp~t~~w~~l~~~~-~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~ 193 (596)
+..|. .+..||..+.+-..+..-. -.+|-... ..-..+|.||++ ++++++||+ . +-.... .++..+-|.
T Consensus 71 G~~dg--~vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R-~-~~~~~~-~d~~kkVy~ 140 (323)
T KOG1036|consen 71 GGLDG--QVRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR-N-KVVVGT-FDQGKKVYC 140 (323)
T ss_pred eccCc--eEEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc-c-cccccc-cccCceEEE
Confidence 44443 5789999888776664321 23443222 223456889986 679999997 3 222222 245556553
Q ss_pred EEEEccCCcEEEEcCCCCCcEEEe
Q 035640 194 TQVTLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 194 s~~~L~dG~VyViGG~~~~~~E~y 217 (596)
+ .+ .|..+|+|+.+. .+-+|
T Consensus 141 -~-~v-~g~~LvVg~~~r-~v~iy 160 (323)
T KOG1036|consen 141 -M-DV-SGNRLVVGTSDR-KVLIY 160 (323)
T ss_pred -E-ec-cCCEEEEeecCc-eEEEE
Confidence 2 33 577888888654 34455
No 102
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=46.92 E-value=38 Score=34.15 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred eCCCCceEee---cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCccc--
Q 035640 357 TKPNAVWKKE---RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPR-- 431 (596)
Q Consensus 357 ~~~~~~W~~~---~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R-- 431 (596)
.|...+|+.. .++.+......+.+.+|+++++.....+ .. .+.+.+ ..+.|++|+....+....
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~-~l~l~~---S~D~g~tW~~~~~i~~~~~~ 258 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RS-NLSLYV---SEDGGKTWSRPKTIDDGPNG 258 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SE-EEEEEE---ECTTCEEEEEEEEEEEEE-C
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CC-ceEEEE---EeCCCCcCCccEEEeCCCCC
Confidence 3446789863 6777776666677899999999873211 11 122222 334466998655554433
Q ss_pred -ccceEEEEcCCCcEEE
Q 035640 432 -MYHSSSVLLPDGTVLV 447 (596)
Q Consensus 432 -~yhs~a~LlpDG~Vlv 447 (596)
...+..+.++||+|+|
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 4455667779999986
No 103
>PRK05137 tolB translocation protein TolB; Provisional
Probab=46.29 E-value=3.9e+02 Score=29.08 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=47.2
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
....+|..+++.+.+..... ........+||+-+++.....+...+.++|.. +.+.+.+.. ....+.....-+||
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~lt~---~~~~~~~~~~SpdG 345 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRISF---GGGRYSTPVWSPRG 345 (435)
T ss_pred eEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEeec---CCCcccCeEECCCC
Confidence 35567888888877754221 11224567899877765544455678888876 554444321 12223333445688
Q ss_pred cEEEEcC
Q 035640 202 GFIVVGG 208 (596)
Q Consensus 202 ~VyViGG 208 (596)
+.+++..
T Consensus 346 ~~ia~~~ 352 (435)
T PRK05137 346 DLIAFTK 352 (435)
T ss_pred CEEEEEE
Confidence 7766643
No 104
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=45.10 E-value=24 Score=23.32 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=11.5
Q ss_pred eeeeccCCCEEEEEeee
Q 035640 75 HAILLPKINKVLMYDAT 91 (596)
Q Consensus 75 ~~~ll~~~gkV~~~g~~ 91 (596)
|.++|..+|+||.||..
T Consensus 10 ht~al~~~g~v~~wG~n 26 (30)
T PF13540_consen 10 HTCALTSDGEVYCWGDN 26 (30)
T ss_dssp EEEEEE-TTEEEEEE--
T ss_pred EEEEEEcCCCEEEEcCC
Confidence 66666599999999964
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=45.03 E-value=3.3e+02 Score=28.55 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCEEeCcCCCc--cccccCeecCCCcEEEEcCCCCCCCeEEEEeCC
Q 035640 120 WCHSVLFDFETSELTALKLQTD--TWCSSGGLTADGDLVSTGGFGGGANTVRYLSTC 174 (596)
Q Consensus 120 ~~~~~~yDp~t~~w~~l~~~~~--~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~ 174 (596)
-..+.+||+.+++...+..-.. .-|.-... .+-.+|++|-++ ++++++|++
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWD---KTlKfWD~R 145 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWD---KTLKFWDTR 145 (347)
T ss_pred CCceEEEEccCCCeeeeeecccceeEEEEecC-CCcceeEecccc---cceeecccC
Confidence 3468899999998887653111 11211100 123577888775 789999987
No 106
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=44.70 E-value=1.5e+02 Score=30.31 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCC---cccccEEE-EccCCcEEEEcCCCCCcEEEe-CCCC
Q 035640 147 GGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALAD---PRWYSTQV-TLPDGGFIVVGGRGAFSYEYI-PPEG 221 (596)
Q Consensus 147 ~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~---~R~y~s~~-~L~dG~VyViGG~~~~~~E~y-P~~~ 221 (596)
.++..|-.-+++||.. +-+|+||-. .-+ +++|.. .|.--.+. .+.|..|+-. .+..++..| -+++
T Consensus 106 ~af~~ds~~lltgg~e---kllrvfdln-~p~----App~E~~ghtg~Ir~v~wc~eD~~iLSS--add~tVRLWD~rTg 175 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQE---KLLRVFDLN-RPK----APPKEISGHTGGIRTVLWCHEDKCILSS--ADDKTVRLWDHRTG 175 (334)
T ss_pred EEecccchhhhccchH---HHhhhhhcc-CCC----CCchhhcCCCCcceeEEEeccCceEEee--ccCCceEEEEeccC
Confidence 3455678888899975 557888864 211 122322 12222222 2334444332 555667776 4443
Q ss_pred CCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEe-cceeEEecCCCCeEEEeeccccCCCCCCC
Q 035640 222 QSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFS-NNRSILLDPKANKVVREFPILTGGSRNYP 300 (596)
Q Consensus 222 ~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~G-g~~~e~yDp~t~~w~~~lp~mp~~~R~~p 300 (596)
+-.. ....+.. --.+-+..+|+|..+. |.++..+|+++-.-.+ --.||. +
T Consensus 176 t~v~-sL~~~s~----------------------VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK-s~k~P~---n-- 226 (334)
T KOG0278|consen 176 TEVQ-SLEFNSP----------------------VTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK-SYKMPC---N-- 226 (334)
T ss_pred cEEE-EEecCCC----------------------CcceeeccCCCEEEEecCceeEEecccccccee-eccCcc---c--
Confidence 2110 0000110 0023356799998876 5567778988765432 223442 1
Q ss_pred CCceEEeccccccccccccCCCEEEEEcCcc
Q 035640 301 ASAMSVLLPLKLRANNATATKAKVLVCGGAQ 331 (596)
Q Consensus 301 ~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~ 331 (596)
-.+|.+-| +-.+|||||-+
T Consensus 227 -V~SASL~P-----------~k~~fVaGged 245 (334)
T KOG0278|consen 227 -VESASLHP-----------KKEFFVAGGED 245 (334)
T ss_pred -cccccccC-----------CCceEEecCcc
Confidence 12344432 45899999965
No 107
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.42 E-value=4e+02 Score=28.00 Aligned_cols=99 Identities=12% Similarity=0.282 Sum_probs=52.2
Q ss_pred cC-CCcEEEEecc---eeEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccc
Q 035640 262 SP-DGNLFIFSNN---RSILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYF 337 (596)
Q Consensus 262 ~~-dG~Ifv~Gg~---~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 337 (596)
.| ++.+.+|+-+ -..++|+.+.+-.+.+.+ + ..|.| .|-++.- .+|+.|..==. .+.
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~-~gRHF--yGHg~fs-----------~dG~~LytTEn---d~~- 73 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-P-PGRHF--YGHGVFS-----------PDGRLLYTTEN---DYE- 73 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-C-CCCEE--ecCEEEc-----------CCCCEEEEecc---ccC-
Confidence 34 5666667643 467899999886655554 2 25765 5666643 25555543211 111
Q ss_pred ccccccccCCCCceEEEEeeCCCCceEee-cCC-CCccccceEEeCCC-eEEEEcC
Q 035640 338 SETKKQFFPALQDCGRIDITKPNAVWKKE-RMP-SPRVMGDMVILPTE-DILLLNG 390 (596)
Q Consensus 338 ~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~-~~R~~~~avvLpdG-~V~vvGG 390 (596)
..--...+||. ...++.. ..+ ..---|....+||| ++.|.+|
T Consensus 74 --------~g~G~IgVyd~---~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 74 --------TGRGVIGVYDA---ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred --------CCcEEEEEEEC---cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 11122334444 3344443 222 23334677889999 5555555
No 108
>PTZ00420 coronin; Provisional
Probab=44.10 E-value=3.1e+02 Score=31.46 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=17.3
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCC
Q 035640 381 PTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRG 415 (596)
Q Consensus 381 pdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t 415 (596)
+|++.++.+|.+.. .-.++-+||..+
T Consensus 224 ~d~~~IlTtG~d~~---------~~R~VkLWDlr~ 249 (568)
T PTZ00420 224 GDDNYILSTGFSKN---------NMREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEEcCCC---------CccEEEEEECCC
Confidence 68888888776521 012578999875
No 109
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.39 E-value=2.7e+02 Score=29.32 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=64.0
Q ss_pred eeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccceeEEEEeCCCCCEEeC-cC-CCccccccCeecCCCc
Q 035640 77 ILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWCHSVLFDFETSELTAL-KL-QTDTWCSSGGLTADGD 154 (596)
Q Consensus 77 ~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l-~~-~~~~fc~~~~~l~dG~ 154 (596)
+.-|..+.++++.+.. | .+..+||+.+.+-... .. ....|...+++.+||+
T Consensus 11 a~~p~~~~avafaRRP-----------G----------------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~ 63 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRP-----------G----------------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR 63 (305)
T ss_pred eeCCCCCeEEEEEeCC-----------C----------------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC
Confidence 3334478899998753 1 2578899999876543 33 3456888888999998
Q ss_pred EEEEc-CCC-CCCCeEEEEeCCCCCceeecCcCCC-CcccccEEEEccCCcEEEE--cCC
Q 035640 155 LVSTG-GFG-GGANTVRYLSTCDGCDWREYPTALA-DPRWYSTQVTLPDGGFIVV--GGR 209 (596)
Q Consensus 155 ilv~G-G~~-~g~~~v~~fdP~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyVi--GG~ 209 (596)
+|.+= ... .+.-.|-+||.. .....+.. .+ .+-.-|-...++||+-+|| ||.
T Consensus 64 ~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 64 LLYTTENDYETGRGVIGVYDAA--RGYRRIGE-FPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred EEEEeccccCCCcEEEEEEECc--CCcEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 77763 221 233457789975 34444432 22 2344456778889955555 563
No 110
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.96 E-value=1.4e+02 Score=30.91 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=47.9
Q ss_pred EEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCC-CCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCC---
Q 035640 353 RIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGA-KTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAG--- 427 (596)
Q Consensus 353 ~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~-~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~--- 427 (596)
.||+. +.+|... .=-..-+ ..+...++.-++++|. .. ..........||.++. +|+.+...
T Consensus 20 ~yd~~--~~qW~~~g~~i~G~V--~~l~~~~~~~Llv~G~ft~-------~~~~~~~la~yd~~~~---~w~~~~~~~s~ 85 (281)
T PF12768_consen 20 LYDTD--NSQWSSPGNGISGTV--TDLQWASNNQLLVGGNFTL-------NGTNSSNLATYDFKNQ---TWSSLGGGSSN 85 (281)
T ss_pred EEECC--CCEeecCCCCceEEE--EEEEEecCCEEEEEEeeEE-------CCCCceeEEEEecCCC---eeeecCCcccc
Confidence 57766 7899986 2222222 2344444444444553 21 1112335789999999 99988773
Q ss_pred CcccccceEEEEcCCC-cEEEecCC
Q 035640 428 TIPRMYHSSSVLLPDG-TVLVAGSN 451 (596)
Q Consensus 428 ~~~R~yhs~a~LlpDG-~Vlv~GG~ 451 (596)
.++..-....+...|+ +++++|..
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEecee
Confidence 3554433444444466 57777765
No 111
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.67 E-value=4e+02 Score=28.43 Aligned_cols=96 Identities=16% Similarity=0.270 Sum_probs=60.1
Q ss_pred ccccceeEEEEeCCCCCEEeCcC---CC-----ccccccCeecCCCcEEEEcCCCCCCCeEEEEe--CCCCCceeecC--
Q 035640 116 ELDCWCHSVLFDFETSELTALKL---QT-----DTWCSSGGLTADGDLVSTGGFGGGANTVRYLS--TCDGCDWREYP-- 183 (596)
Q Consensus 116 ~~~~~~~~~~yDp~t~~w~~l~~---~~-----~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fd--P~~t~~W~~~~-- 183 (596)
|++..-.+..||+...+++.+.. ++ +.+|+..-..+||+.|.+--. +.+++.+|. |. +.+-.-..
T Consensus 210 EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~-~g~L~~~~~~ 286 (346)
T COG2706 210 ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPD-GGKLELVGIT 286 (346)
T ss_pred ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCC-CCEEEEEEEe
Confidence 44444556778888888888753 22 456777777889997777533 345666654 44 34321111
Q ss_pred -cCCCCcccccEEEEccCCcEEEEcCCCCCcEEEe
Q 035640 184 -TALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 184 -~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~y 217 (596)
..-+.||-. ..-++|+.+++-+.++.++.+|
T Consensus 287 ~teg~~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 287 PTEGQFPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ccCCcCCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 123456643 3445789999999888777777
No 112
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=41.90 E-value=2.5e+02 Score=24.94 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=13.9
Q ss_pred ceEEEEEcCCCCCcCCCcceEEEEE
Q 035640 558 LHDIIALAPSSGAVAPPGYYLLYVV 582 (596)
Q Consensus 558 ~~~~~v~~P~~~~v~pPG~ymLFv~ 582 (596)
.-++.|+.|+| ||=|.|-|-|-
T Consensus 94 ~~tv~V~spa~---A~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPAN---APVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TT---S--EEEEEEEE
T ss_pred EEEEEEECCCC---CceEEEEEEEE
Confidence 45777788888 78899999774
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=41.84 E-value=4.5e+02 Score=28.69 Aligned_cols=84 Identities=8% Similarity=0.130 Sum_probs=50.0
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
+...+|+.+.+.+.+.... ..+......+||+.+++.+..++...+.++|.. +.++..+.. .. .......-+||
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-~g~~~~Lt~-~~---~~~~p~~SpDG 385 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGVQVLTD-TF---LDETPSIAPNG 385 (429)
T ss_pred eEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEeCC-CC---CCCCceECCCC
Confidence 3445577777776664321 122334567899887776554445678889987 777766543 11 11123344799
Q ss_pred cEEEEcCCCC
Q 035640 202 GFIVVGGRGA 211 (596)
Q Consensus 202 ~VyViGG~~~ 211 (596)
+.++....++
T Consensus 386 ~~i~~~s~~~ 395 (429)
T PRK03629 386 TMVIYSSSQG 395 (429)
T ss_pred CEEEEEEcCC
Confidence 8887766544
No 114
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.75 E-value=4.7e+02 Score=27.72 Aligned_cols=261 Identities=16% Similarity=0.105 Sum_probs=126.3
Q ss_pred EEEEeCCCCC--EEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCC-CCCceeecCcCCCCcccccEEEEcc
Q 035640 123 SVLFDFETSE--LTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTC-DGCDWREYPTALADPRWYSTQVTLP 199 (596)
Q Consensus 123 ~~~yDp~t~~--w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~-~t~~W~~~~~~M~~~R~y~s~~~L~ 199 (596)
...+|+.+.+ |+.........|++.....||+||+-.... .+.+||.. .+..|..-.. .. .+|. +.++..
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g----~~y~ld~~~G~~~W~~~~~-~~-~~~~-~~~v~~ 152 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG----KLYALDASTGTLVWSRNVG-GS-PYYA-SPPVVG 152 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc----eEEEEECCCCcEEEEEecC-CC-eEEe-cCcEEc
Confidence 4556777766 755433234567777788899987765432 68899984 2557876543 22 5554 345555
Q ss_pred CCcEEEEcCCCCCcEEEeCCCCC--CCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecc---e
Q 035640 200 DGGFIVVGGRGAFSYEYIPPEGQ--SNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNN---R 274 (596)
Q Consensus 200 dG~VyViGG~~~~~~E~yP~~~~--w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~---~ 274 (596)
|+.||+... ++..+-+.+.+++ |..... .+ +... ........+|.+|+-... .
T Consensus 153 ~~~v~~~s~-~g~~~al~~~tG~~~W~~~~~-~~-~~~~-------------------~~~~~~~~~~~vy~~~~~~~~~ 210 (370)
T COG1520 153 DGTVYVGTD-DGHLYALNADTGTLKWTYETP-AP-LSLS-------------------IYGSPAIASGTVYVGSDGYDGI 210 (370)
T ss_pred CcEEEEecC-CCeEEEEEccCCcEEEEEecC-Cc-cccc-------------------cccCceeecceEEEecCCCcce
Confidence 899988741 1111111133221 321000 00 0000 001111446677665442 2
Q ss_pred eEEecCCCCe--EEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceE
Q 035640 275 SILLDPKANK--VVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCG 352 (596)
Q Consensus 275 ~e~yDp~t~~--w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 352 (596)
..-+|+.+++ |.+.. ..+. .+ +... .. .....+.|++.||.-.+.+ .....
T Consensus 211 ~~a~~~~~G~~~w~~~~-~~~~-~~----~~~~-~~--------~~~~~~~v~v~~~~~~~~~------------~g~~~ 263 (370)
T COG1520 211 LYALNAEDGTLKWSQKV-SQTI-GR----TAIS-TT--------PAVDGGPVYVDGGVYAGSY------------GGKLL 263 (370)
T ss_pred EEEEEccCCcEeeeeee-eccc-Cc----cccc-cc--------ccccCceEEECCcEEEEec------------CCeEE
Confidence 4456775543 54211 1111 11 1110 00 1235788888887311111 12245
Q ss_pred EEEeeCCCCceEee-cCC--CCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCC-ceEEecCCC
Q 035640 353 RIDITKPNAVWKKE-RMP--SPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQ-RFKELAAGT 428 (596)
Q Consensus 353 ~id~~~~~~~W~~~-~M~--~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~-~Wt~~a~~~ 428 (596)
++|..+.+..|+.. ++. ..+...+...--||++|+..-.... .....+.++++..+.-. .|.....-
T Consensus 264 ~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~w~~~~~g- 334 (370)
T COG1520 264 CLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDG--------RGSGSLYALADVPGGTLLKWSYPVGG- 334 (370)
T ss_pred EEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEecccc--------ccccceEEEeccCCCeeEEEEEeCCC-
Confidence 56665556789887 532 2233333333459999997644311 01234567777333112 56543333
Q ss_pred cccccceEEEEcCCCcEEEecCC
Q 035640 429 IPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 429 ~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
.+........||.+|.++-+
T Consensus 335 ---~~~~~~~~~~~g~~y~~~~~ 354 (370)
T COG1520 335 ---GYSLSTVAGSDGTLYFGGDD 354 (370)
T ss_pred ---ceecccceeccCeEEecccC
Confidence 22223333447777776654
No 115
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=39.99 E-value=5.5e+02 Score=28.31 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=65.5
Q ss_pred CccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCce-eecCcCCCCcccccEEEEccCCcEEEEcCCCCCcEEEe-
Q 035640 140 TDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDW-REYPTALADPRWYSTQVTLPDGGFIVVGGRGAFSYEYI- 217 (596)
Q Consensus 140 ~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W-~~~~~~M~~~R~y~s~~~L~dG~VyViGG~~~~~~E~y- 217 (596)
++..+....+.+||+.++.|..+ ..+++||......- ..+.. +.... .+++.-++|+.++.|+.+ .++.+|
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D---~tiriwd~~~~~~~~~~l~g-H~~~v--~~~~f~p~g~~i~Sgs~D-~tvriWd 274 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDD---KTLRIWDLKDDGRNLKTLKG-HSTYV--TSVAFSPDGNLLVSGSDD-GTVRIWD 274 (456)
T ss_pred cccceeeeEECCCCcEEEEecCC---ceEEEeeccCCCeEEEEecC-CCCce--EEEEecCCCCEEEEecCC-CcEEEEe
Confidence 56667777788999988877754 67899998312122 22212 33222 455566678777777655 456676
Q ss_pred CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcCCCcEEEEecce--eEEecCCCCe
Q 035640 218 PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSPDGNLFIFSNNR--SILLDPKANK 284 (596)
Q Consensus 218 P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~dG~Ifv~Gg~~--~e~yDp~t~~ 284 (596)
.++.+ ....+....+. =-.+..-++|++++.+..+ ..+||..+..
T Consensus 275 ~~~~~------~~~~l~~hs~~----------------is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 275 VRTGE------CVRKLKGHSDG----------------ISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred ccCCe------EEEeeeccCCc----------------eEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 44321 11112110000 0012234688888888644 5678998876
No 116
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=39.65 E-value=27 Score=26.86 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.7
Q ss_pred EEEcCCCcEEEecCCC
Q 035640 437 SVLLPDGTVLVAGSNT 452 (596)
Q Consensus 437 a~LlpDG~Vlv~GG~~ 452 (596)
..+.|||||+++|...
T Consensus 6 ~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 6 VAVQSDGKILVAGYVD 21 (55)
T ss_pred EEECCCCcEEEEEEee
Confidence 4467999999999653
No 117
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=38.88 E-value=69 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcCCCCCcCCCcceEEEEEcCCcCCccEEEEeC
Q 035640 554 ATEGLHDIIALAPSSGAVAPPGYYLLYVVYKGVPSVAMWVQIK 596 (596)
Q Consensus 554 ~~~g~~~~~v~~P~~~~v~pPG~ymLFv~~~gvPS~a~~v~i~ 596 (596)
...|.++++|++|.+ +++|.+=|.+..+|+.|.+..|.|+
T Consensus 176 g~~Gl~QvNv~vP~~---~~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 176 GFVGLYQVNVRVPAG---LATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred CCCceEEEEEEcCCC---CCCCcEeEEEEECCccCCcEEEEeC
Confidence 335789999999988 5789888888889999999888775
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=36.44 E-value=6e+02 Score=27.71 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...+||..+++.+.+..... ........+||+.+++.....+...+..+|.. +.+-..+.. ...........+||
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~lt~---~~~~~~~~~~SpDG 342 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRITW---EGSQNQDADVSSDG 342 (429)
T ss_pred EEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCC
Confidence 35678999988887754322 22334567899877665443344567777876 554443321 11122234456788
Q ss_pred cEEEEcCCC
Q 035640 202 GFIVVGGRG 210 (596)
Q Consensus 202 ~VyViGG~~ 210 (596)
+.++..+..
T Consensus 343 ~~Ia~~~~~ 351 (429)
T PRK03629 343 KFMVMVSSN 351 (429)
T ss_pred CEEEEEEcc
Confidence 877665543
No 119
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=36.22 E-value=5.6e+02 Score=27.26 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=51.4
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...++|..+++.+.+....... ......+||+.+++.....+...+..+|.. +.++..+.. ...+......-+||
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~l~~---~~~~~~~~~~spdg 333 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRRLTF---RGGYNASPSWSPDG 333 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccCeEECCCC
Confidence 3567788888877775422111 122446788766655443344578888987 666655431 12333334455688
Q ss_pred cEEEEcCCCCCcEEE
Q 035640 202 GFIVVGGRGAFSYEY 216 (596)
Q Consensus 202 ~VyViGG~~~~~~E~ 216 (596)
+.+++........++
T Consensus 334 ~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 334 DLIAFVHREGGGFNI 348 (417)
T ss_pred CEEEEEEccCCceEE
Confidence 887776654433333
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=35.92 E-value=6.4e+02 Score=27.85 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=75.1
Q ss_pred cceEEEcCCCcEEEEecce--eEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCC
Q 035640 256 YPFVYLSPDGNLFIFSNNR--SILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWD 333 (596)
Q Consensus 256 yp~~~~~~dG~Ifv~Gg~~--~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~ 333 (596)
|..+..-|||.||..|-.+ .-+||.+...- ++..|+ . +|..--+. ..-+|.-++++--+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpg-h-----t~~vk~i~--------FsENGY~Lat~add-- 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPG-H-----TGPVKAIS--------FSENGYWLATAADD-- 410 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCC-C-----CCceeEEE--------eccCceEEEEEecC--
Confidence 5556667999999999765 45788887652 333332 1 11111000 11356655554321
Q ss_pred ccccccccccccCCCCceEEEEeeCCCCceEeecCCCCccccceEE-eCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEc
Q 035640 334 SFYFSETKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVI-LPTEDILLLNGAKTGTSGWNDAEDPNLVPALYT 412 (596)
Q Consensus 334 ~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avv-LpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YD 412 (596)
.++-..|+..-. -.....++... ...++. =..|+.++++|.+ +.+.+|+
T Consensus 411 ---------------~~V~lwDLRKl~-n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~ 460 (506)
T KOG0289|consen 411 ---------------GSVKLWDLRKLK-NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-------------LQVYICK 460 (506)
T ss_pred ---------------CeEEEEEehhhc-ccceeeccccc-cceeEEEcCCCCeEEeecce-------------eEEEEEe
Confidence 125566766211 12222333322 122222 2458999998754 3678999
Q ss_pred CCCCCCCceEEecCCCcccccceEEEEc-CCCcEEEecCC
Q 035640 413 PRGPSRQRFKELAAGTIPRMYHSSSVLL-PDGTVLVAGSN 451 (596)
Q Consensus 413 P~t~~g~~Wt~~a~~~~~R~yhs~a~Ll-pDG~Vlv~GG~ 451 (596)
-.+. +|+.+...+..- .-++.+-+ .+.+++..||.
T Consensus 461 k~~k---~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 461 KKTK---SWTEIKELADHS-GLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred cccc---cceeeehhhhcc-cccceeeecccceEEeeccc
Confidence 8898 999887665432 12233322 24445555554
No 121
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=35.75 E-value=3.5e+02 Score=24.74 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=51.4
Q ss_pred CCCeeeeCC---CC---CeeecCCeEEEEEEeccccccccCeEEEEEE-eCCcccccCCCCCc--eEEeeeeeeeeccCC
Q 035640 483 LRPSIVVDS---SD---KVIHYGQRFSVKVKSNELTVKNRDDLKLTMY-APAFTTHGISMNQR--LLILSLVKVIKNVGP 553 (596)
Q Consensus 483 ~RP~i~~~~---~p---~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv-~~~~~THs~n~~QR--~v~L~~~~~~~~~~~ 553 (596)
..|+|+... .| ..+..|+.|.+.+... .+..+.++.+- ..-|-.|+-...-+ ..+..|...- + ..
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~----d~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~-~-~~ 86 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADIS----DNSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDY-D-IY 86 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEE----cccceeEEEEEEecCcCcccccccccccccCcEEEEEE-c-cc
Confidence 478777661 02 3478899888877653 23344444431 22233333332211 2222222110 0 01
Q ss_pred CCCC--ceEEEEEcCCCCCcCCCcceEEEEE--c-CC-cCCccEEEEe
Q 035640 554 ATEG--LHDIIALAPSSGAVAPPGYYLLYVV--Y-KG-VPSVAMWVQI 595 (596)
Q Consensus 554 ~~~g--~~~~~v~~P~~~~v~pPG~ymLFv~--~-~g-vPS~a~~v~i 595 (596)
.+.. .-...+++|++ |+||-|-+.+. + .| .=..+.-|+|
T Consensus 87 ~g~~~~~~h~~i~IPa~---a~~G~YH~~i~VtD~~Gn~~~~~~~i~I 131 (132)
T PF15418_consen 87 GGKKNYDFHEHIDIPAD---APAGDYHFMITVTDAAGNQTEEERSIKI 131 (132)
T ss_pred CCcccEeEEEeeeCCCC---CCCcceEEEEEEEECCCCEEEEEEEEEE
Confidence 1111 23455689988 99999987775 3 35 3333555554
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=35.67 E-value=6e+02 Score=28.20 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=65.6
Q ss_pred eEEEEeCCCCCEEeCcCCCcc---ccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEc
Q 035640 122 HSVLFDFETSELTALKLQTDT---WCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTL 198 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~---fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L 198 (596)
....||..+.+.+++..+..+ +-..-.+.+++..+++-|... .|.+..-. +.+|... |...---...+--
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhak-T~eli~s---~KieG~v~~~~fs 353 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAK-TKELITS---FKIEGVVSDFTFS 353 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc---eEEeehhh-hhhhhhe---eeeccEEeeEEEe
Confidence 457899999999988654211 111112345777777766542 35555555 6777532 3322111223333
Q ss_pred cCCcEEEEcCCCCCcEEEe-CCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceE-EEcCCCcEEEEecce--
Q 035640 199 PDGGFIVVGGRGAFSYEYI-PPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFV-YLSPDGNLFIFSNNR-- 274 (596)
Q Consensus 199 ~dG~VyViGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~-~~~~dG~Ifv~Gg~~-- 274 (596)
.||+.+++.|..+ .+.+| -..+ ..++ +|.++...+-.. ...++|..|+.|..+
T Consensus 354 Sdsk~l~~~~~~G-eV~v~nl~~~---------~~~~-------------rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 354 SDSKELLASGGTG-EVYVWNLRQN---------SCLH-------------RFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred cCCcEEEEEcCCc-eEEEEecCCc---------ceEE-------------EEeecCccceeeeeecCCCceEEeccCcce
Confidence 5776555444333 22222 1111 0111 122222333222 335799988888776
Q ss_pred eEEecCCC
Q 035640 275 SILLDPKA 282 (596)
Q Consensus 275 ~e~yDp~t 282 (596)
+-+||-.+
T Consensus 411 VNIYd~~s 418 (514)
T KOG2055|consen 411 VNIYDGNS 418 (514)
T ss_pred EEEeccch
Confidence 45788654
No 123
>PRK01742 tolB translocation protein TolB; Provisional
Probab=34.93 E-value=4.2e+02 Score=28.87 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCccc-ccEEEEccC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRW-YSTQVTLPD 200 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~-y~s~~~L~d 200 (596)
...++|..+++.+.+..... ........+||+.++++...++...+..+|.. +.+...+.. ... .....--+|
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~lt~----~~~~~~~~~wSpD 302 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQLTS----GAGNNTEPSWSPD 302 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEeecc----CCCCcCCEEECCC
Confidence 35678888876655543221 11234667899877776544444567777876 555544422 111 123344568
Q ss_pred CcEEEEc
Q 035640 201 GGFIVVG 207 (596)
Q Consensus 201 G~VyViG 207 (596)
|+-+++.
T Consensus 303 G~~i~f~ 309 (429)
T PRK01742 303 GQSILFT 309 (429)
T ss_pred CCEEEEE
Confidence 8754443
No 124
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.69 E-value=5.1e+02 Score=26.51 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEeecCCCCccccceEEe--CCCeEEEEcCCCCCCCC
Q 035640 320 TKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVIL--PTEDILLLNGAKTGTSG 397 (596)
Q Consensus 320 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avvL--pdG~V~vvGG~~~g~~g 397 (596)
..+.|+..||.. ..+..|++ +.+.+.+--.+.-+-|+ |+. -+++|+ .|+.+ |
T Consensus 125 ~enSi~~AgGD~------------------~~y~~dlE--~G~i~r~~rGHtDYvH~-vv~R~~~~qil-sG~ED-G--- 178 (325)
T KOG0649|consen 125 SENSILFAGGDG------------------VIYQVDLE--DGRIQREYRGHTDYVHS-VVGRNANGQIL-SGAED-G--- 178 (325)
T ss_pred CCCcEEEecCCe------------------EEEEEEec--CCEEEEEEcCCcceeee-eeecccCccee-ecCCC-c---
Confidence 478899999832 23456776 56666652122234454 443 456664 34432 3
Q ss_pred CCCCCCCCcccEEEcCCCCCCCceE-EecCC---Cccc--ccceEEEEcCCCcEEEecCCCCC
Q 035640 398 WNDAEDPNLVPALYTPRGPSRQRFK-ELAAG---TIPR--MYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 398 ~~~~~~~~~s~e~YDP~t~~g~~Wt-~~a~~---~~~R--~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
++-+||-+|. +=. .+.+- ..-| ..-=..+|--|..=+|.||++.-
T Consensus 179 ---------tvRvWd~kt~---k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 179 ---------TVRVWDTKTQ---KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL 229 (325)
T ss_pred ---------cEEEEecccc---ceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCce
Confidence 3456665555 221 12211 1112 11112445558889999998764
No 125
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=32.25 E-value=2.4e+02 Score=23.16 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceE-EeeeeeeeeccCCCCCCceEEEEEcCCCCCc
Q 035640 493 DKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLL-ILSLVKVIKNVGPATEGLHDIIALAPSSGAV 571 (596)
Q Consensus 493 p~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v-~L~~~~~~~~~~~~~~g~~~~~v~~P~~~~v 571 (596)
|..+..|+.++|++...-..........|.|...+... +++.| .|.- +...+++++..+.
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~~-----------g~~~~v~~~~~~~--- 72 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLAP-----------GESETVTFTWTPP--- 72 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-T-----------TEEEEEEEEEE-S---
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcCC-----------CcEEEEEEEEEeC---
Confidence 88899999887776642111122344667776665544 33333 2221 1234555554444
Q ss_pred CCCcceEEEEEc
Q 035640 572 APPGYYLLYVVY 583 (596)
Q Consensus 572 ~pPG~ymLFv~~ 583 (596)
-||.|-|.+..
T Consensus 73 -~~G~~~i~~~i 83 (101)
T PF07705_consen 73 -SPGSYTIRVVI 83 (101)
T ss_dssp -S-CEEEEEEEE
T ss_pred -CCCeEEEEEEE
Confidence 67888877764
No 126
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=31.90 E-value=6.4e+02 Score=26.67 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=45.9
Q ss_pred eEEEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCC-C
Q 035640 351 CGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAG-T 428 (596)
Q Consensus 351 ~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~-~ 428 (596)
..++|..+.+..|+.. +.. .+.... .+..|++||+.... + .+.+.|+++. -.+|+.-.+. .
T Consensus 123 ~y~ld~~~G~~~W~~~~~~~-~~~~~~-~v~~~~~v~~~s~~--g------------~~~al~~~tG-~~~W~~~~~~~~ 185 (370)
T COG1520 123 LYALDASTGTLVWSRNVGGS-PYYASP-PVVGDGTVYVGTDD--G------------HLYALNADTG-TLKWTYETPAPL 185 (370)
T ss_pred EEEEECCCCcEEEEEecCCC-eEEecC-cEEcCcEEEEecCC--C------------eEEEEEccCC-cEEEEEecCCcc
Confidence 4456664445689887 543 455443 66779999987521 1 2356666653 2368744433 2
Q ss_pred cccccceEEEEcCCCcEEEecC
Q 035640 429 IPRMYHSSSVLLPDGTVLVAGS 450 (596)
Q Consensus 429 ~~R~yhs~a~LlpDG~Vlv~GG 450 (596)
..+.+-+.+ .-+|.||+..-
T Consensus 186 ~~~~~~~~~--~~~~~vy~~~~ 205 (370)
T COG1520 186 SLSIYGSPA--IASGTVYVGSD 205 (370)
T ss_pred ccccccCce--eecceEEEecC
Confidence 333333333 34888888754
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=31.15 E-value=4.8e+02 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=15.5
Q ss_pred cCCCcEEEEec-ceeEEecCCCCe
Q 035640 262 SPDGNLFIFSN-NRSILLDPKANK 284 (596)
Q Consensus 262 ~~dG~Ifv~Gg-~~~e~yDp~t~~ 284 (596)
+.+|+||+... .....+|.++++
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk 90 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGK 90 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCc
Confidence 34788888653 346778888754
No 128
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.79 E-value=2.6e+02 Score=32.58 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=48.4
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccc-cEEEEccC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWY-STQVTLPD 200 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y-~s~~~L~d 200 (596)
.+.+||-.+.....+-.-+...-.+-.+.++|+-|+.|+.+ ..|.+||-. +.+- +. .|.....- .+..--.|
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~-~~~~--v~-~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLA-NGSL--VK-QLKGHTGTIYSLSFSRD 630 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcC-CCcc--hh-hhhcccCceeEEEEecC
Confidence 47888887766544322121111223345699999999864 457888876 4321 11 12211111 12222239
Q ss_pred CcEEEEcCCCCCcEEEe
Q 035640 201 GGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 201 G~VyViGG~~~~~~E~y 217 (596)
|.|+|+||.+. ++.+|
T Consensus 631 g~vLasgg~Dn-sV~lW 646 (707)
T KOG0263|consen 631 GNVLASGGADN-SVRLW 646 (707)
T ss_pred CCEEEecCCCC-eEEEE
Confidence 99999999764 45554
No 129
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.56 E-value=2.6e+02 Score=29.26 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=53.1
Q ss_pred CCCc-cccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEE
Q 035640 369 PSPR-VMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLV 447 (596)
Q Consensus 369 ~~~R-~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv 447 (596)
...| .++-.|--+||+++-.-=.+. +.+.. -+-+||-. . .++.++.-+.--+...-.+|++|||.+|
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEndf------d~~rG--ViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATENDF------DPNRG--VIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCCC------CCCCc--eEEEEecc-c---ccceecccccCCcCcceeEEecCCcEEE
Confidence 3344 333358899999865421110 01111 35789977 4 6777776655545445678899999887
Q ss_pred ecCC---CCCccccCCCCCCcceEEEEcCCC
Q 035640 448 AGSN---THNGYILDAKYPTELRVEKFSPPY 475 (596)
Q Consensus 448 ~GG~---~~~~~~~~~~~p~~~~vE~y~Ppy 475 (596)
+-++ .+.++. -+++++|...|.+
T Consensus 178 vanGGIethpdfg-----R~~lNldsMePSl 203 (366)
T COG3490 178 VANGGIETHPDFG-----RTELNLDSMEPSL 203 (366)
T ss_pred EeCCceecccccC-----ccccchhhcCccE
Confidence 6543 222211 2467777777877
No 130
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.91 E-value=7.8e+02 Score=27.08 Aligned_cols=234 Identities=17% Similarity=0.188 Sum_probs=118.9
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEeCCCCCce-eecCcCCC-CcccccEEEEccCCcEEEEcCCCCCcEEEe-CCCCCCC
Q 035640 148 GLTADGDLVSTGGFGGGANTVRYLSTCDGCDW-REYPTALA-DPRWYSTQVTLPDGGFIVVGGRGAFSYEYI-PPEGQSN 224 (596)
Q Consensus 148 ~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W-~~~~~~M~-~~R~y~s~~~L~dG~VyViGG~~~~~~E~y-P~~~~w~ 224 (596)
.+-+||+.++.+... +.+.+++.. ..+ ...- .+. ..++-...+--+||+ |++.|....++.+| .+.+.
T Consensus 166 ~fs~~g~~l~~~~~~---~~i~~~~~~--~~~~~~~~-~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~-- 236 (456)
T KOG0266|consen 166 DFSPDGRALAAASSD---GLIRIWKLE--GIKSNLLR-ELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG-- 236 (456)
T ss_pred EEcCCCCeEEEccCC---CcEEEeecc--cccchhhc-cccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC--
Confidence 446789997776543 456666653 222 1111 132 223334455566888 55566666677777 31210
Q ss_pred CCcccccCcccccccCCCcCCcceeeeccCccceE-EEcCCCcEEEEecce--eEEecCCCCeEEEeeccccCCCCCCCC
Q 035640 225 KSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFV-YLSPDGNLFIFSNNR--SILLDPKANKVVREFPILTGGSRNYPA 301 (596)
Q Consensus 225 ~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~-~~~~dG~Ifv~Gg~~--~e~yDp~t~~w~~~lp~mp~~~R~~p~ 301 (596)
..+-.++. ..-|-+. .-.++|++++.|+.+ +.++|.++.+-.+.+ .+ ... +
T Consensus 237 ---~~~~~l~g-----------------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---~~-hs~-~- 290 (456)
T KOG0266|consen 237 ---RNLKTLKG-----------------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---KG-HSD-G- 290 (456)
T ss_pred ---eEEEEecC-----------------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---ec-cCC-c-
Confidence 01111110 0011122 234688999998864 678899886654433 22 111 1
Q ss_pred CceEEeccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCce---Eee-cCCCCccccce
Q 035640 302 SAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVW---KKE-RMPSPRVMGDM 377 (596)
Q Consensus 302 ~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W---~~~-~M~~~R~~~~a 377 (596)
-+++.. ..++.+++.+..+ ..+..+|.. +..- ... ....+. ....
T Consensus 291 -is~~~f----------~~d~~~l~s~s~d-----------------~~i~vwd~~--~~~~~~~~~~~~~~~~~-~~~~ 339 (456)
T KOG0266|consen 291 -ISGLAF----------SPDGNLLVSASYD-----------------GTIRVWDLE--TGSKLCLKLLSGAENSA-PVTS 339 (456)
T ss_pred -eEEEEE----------CCCCCEEEEcCCC-----------------ccEEEEECC--CCceeeeecccCCCCCC-ceeE
Confidence 122222 2478888888543 234456654 2221 011 222331 2222
Q ss_pred EE-eCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCC-CCceEEecCCCcccccceEEEEcCCCcEEEecCCCCCc
Q 035640 378 VI-LPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS-RQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHNG 455 (596)
Q Consensus 378 vv-LpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~-g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~~ 455 (596)
+. -|||+.++++..+. ++-+||..... -..|+..... .|... ..+..++|+.++.|+...
T Consensus 340 ~~fsp~~~~ll~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~sg~~d~-- 401 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDR-------------TLKLWDLRSGKSVGTYTGHSNL--VRCIF-SPTLSTGGKLIYSGSEDG-- 401 (456)
T ss_pred EEECCCCcEEEEecCCC-------------eEEEEEccCCcceeeecccCCc--ceeEe-cccccCCCCeEEEEeCCc--
Confidence 33 48999888876541 34566666541 1233322222 13322 234477999999998754
Q ss_pred cccCCCCCCcceEEEEcCCCC
Q 035640 456 YILDAKYPTELRVEKFSPPYL 476 (596)
Q Consensus 456 ~~~~~~~p~~~~vE~y~Ppyl 476 (596)
.|++|++...
T Consensus 402 -----------~v~~~~~~s~ 411 (456)
T KOG0266|consen 402 -----------SVYVWDSSSG 411 (456)
T ss_pred -----------eEEEEeCCcc
Confidence 4777877764
No 131
>PRK05137 tolB translocation protein TolB; Provisional
Probab=29.24 E-value=7.7e+02 Score=26.76 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...++|+.+++.+.+..... ........+||+.+++-...++...+.++|.. +.+...+.. -.. ......--+||
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~Lt~-~~~--~~~~~~~spDG 301 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRLTD-SPA--IDTSPSYSPDG 301 (435)
T ss_pred EEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEEccC-CCC--ccCceeEcCCC
Confidence 46788999988877754322 12234567899765544333344678888987 665554432 110 11123334688
Q ss_pred cEEEEc
Q 035640 202 GFIVVG 207 (596)
Q Consensus 202 ~VyViG 207 (596)
+-+++.
T Consensus 302 ~~i~f~ 307 (435)
T PRK05137 302 SQIVFE 307 (435)
T ss_pred CEEEEE
Confidence 755543
No 132
>PRK01029 tolB translocation protein TolB; Provisional
Probab=29.16 E-value=3e+02 Score=30.13 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=37.6
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeec
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREY 182 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~ 182 (596)
...+||+.+++.+.+... ..........+||+.+++-....+...+..+|.. +.+...+
T Consensus 352 ~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~-~g~~~~L 410 (428)
T PRK01029 352 QICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI-TKKTRKI 410 (428)
T ss_pred EEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEe
Confidence 467889999998888643 2223345567899877654433344567788876 5555444
No 133
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=29.07 E-value=7.3e+02 Score=27.26 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=63.4
Q ss_pred cCCCcEEEEecce--eEEecCCCCeEEEeeccccCCCCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccccc
Q 035640 262 SPDGNLFIFSNNR--SILLDPKANKVVREFPILTGGSRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSE 339 (596)
Q Consensus 262 ~~dG~Ifv~Gg~~--~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~ 339 (596)
-+||.+-..||.+ +.++|..++.-...+. +..+ +-.+.+- ..+|.-++.||.+
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k--~I~~V~f------------sPNGy~lATgs~D-------- 366 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIK--EILSVAF------------SPNGYHLATGSSD-------- 366 (459)
T ss_pred cCCCceeeccCccchhheeecccCcEEEEec---cccc--ceeeEeE------------CCCceEEeecCCC--------
Confidence 4799999999976 5789999887553332 1111 1111111 1378888888865
Q ss_pred ccccccCCCCceEEEEeeCCCCceEeecCCCCccccceEEe-C-CCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCC
Q 035640 340 TKKQFFPALQDCGRIDITKPNAVWKKERMPSPRVMGDMVIL-P-TEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPS 417 (596)
Q Consensus 340 ~~~~~~~a~~s~~~id~~~~~~~W~~~~M~~~R~~~~avvL-p-dG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~ 417 (596)
++|-+.|+..-.... .||--+.-.+-|.. | .|+.++..+++. ++-+|. +.
T Consensus 367 ---------nt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD~-------------t~kiWs--~~- 418 (459)
T KOG0272|consen 367 ---------NTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTASYDN-------------TVKIWS--TR- 418 (459)
T ss_pred ---------CcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcccCc-------------ceeeec--CC-
Confidence 356666665211111 44443333322332 2 578888877652 456787 34
Q ss_pred CCceEEecCC
Q 035640 418 RQRFKELAAG 427 (596)
Q Consensus 418 g~~Wt~~a~~ 427 (596)
.|+.+..|
T Consensus 419 --~~~~~ksL 426 (459)
T KOG0272|consen 419 --TWSPLKSL 426 (459)
T ss_pred --Ccccchhh
Confidence 57777666
No 134
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=28.87 E-value=3.3e+02 Score=29.31 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=48.2
Q ss_pred eeEEecCCCCeEEEeeccccCCCCCCCCCceEE-eccccccccccccCCCEEEEEcCccCCccccccccccccCCCCceE
Q 035640 274 RSILLDPKANKVVREFPILTGGSRNYPASAMSV-LLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQFFPALQDCG 352 (596)
Q Consensus 274 ~~e~yDp~t~~w~~~lp~mp~~~R~~p~~g~av-~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 352 (596)
.+-|||...|+.. |.|...-++| .|.+. -.-.+++.||.+ .++-
T Consensus 216 ~VKCwDLe~nkvI----------R~YhGHlS~V~~L~lh--------PTldvl~t~grD-----------------st~R 260 (460)
T KOG0285|consen 216 QVKCWDLEYNKVI----------RHYHGHLSGVYCLDLH--------PTLDVLVTGGRD-----------------STIR 260 (460)
T ss_pred eeEEEechhhhhH----------HHhccccceeEEEecc--------ccceeEEecCCc-----------------ceEE
Confidence 4678999988754 4453332333 23332 245688888865 2344
Q ss_pred EEEeeCCCCceEee--cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCC
Q 035640 353 RIDITKPNAVWKKE--RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGP 416 (596)
Q Consensus 353 ~id~~~~~~~W~~~--~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~ 416 (596)
..|+....+.-... ..+..|++... .|+.|+- |-.+ .++-+||-..+
T Consensus 261 vWDiRtr~~V~~l~GH~~~V~~V~~~~---~dpqvit-~S~D-------------~tvrlWDl~ag 309 (460)
T KOG0285|consen 261 VWDIRTRASVHVLSGHTNPVASVMCQP---TDPQVIT-GSHD-------------STVRLWDLRAG 309 (460)
T ss_pred EeeecccceEEEecCCCCcceeEEeec---CCCceEE-ecCC-------------ceEEEeeeccC
Confidence 45655212222222 34555555442 2788752 3222 15678887776
No 135
>PRK04922 tolB translocation protein TolB; Provisional
Probab=28.74 E-value=7.8e+02 Score=26.71 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=47.3
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
....+|..+++.+.+... ...+......+||+.+++....++...+.++|.. +.+.+.+.. ..+......-+||
T Consensus 317 ~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-~g~~~~Lt~----~~~~~~p~~spdG 390 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-TGSVRTLTP----GSLDESPSFAPNG 390 (433)
T ss_pred eEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECC-CCCeEECCC----CCCCCCceECCCC
Confidence 355667777777776532 2233345667898877664333334578899987 666665432 1121223445688
Q ss_pred cEEEEcCC
Q 035640 202 GFIVVGGR 209 (596)
Q Consensus 202 ~VyViGG~ 209 (596)
+.++....
T Consensus 391 ~~i~~~s~ 398 (433)
T PRK04922 391 SMVLYATR 398 (433)
T ss_pred CEEEEEEe
Confidence 87666543
No 136
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=28.38 E-value=3.4e+02 Score=22.42 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=47.5
Q ss_pred CeeeeCCCCCeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCCceEEEEE
Q 035640 485 PSIVVDSSDKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEGLHDIIAL 564 (596)
Q Consensus 485 P~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g~~~~~v~ 564 (596)
|.|.+.. |..-..|++++|.=+.- .....+|.+ +. ...++...+ ...++++
T Consensus 1 P~I~~i~-P~~g~pG~~VtI~G~gF-----g~~~~~V~~---g~-----------~~a~v~s~s---------dt~I~~~ 51 (81)
T cd00604 1 PLIGSVG-PVMGKPGNTVTISGEGF-----GSTGGTVYF---GG-----------TAAEVLSWS---------DTSIVVE 51 (81)
T ss_pred CeEeeEc-CCCCCCCCEEEEEEECC-----CCCccEEEE---CC-----------EEEEEEEEC---------CCEEEEE
Confidence 6777775 88888999988864321 011123322 21 223444321 3578889
Q ss_pred cCCCCCcCCCcceEEEEEc-CCcCCccEEEE
Q 035640 565 APSSGAVAPPGYYLLYVVY-KGVPSVAMWVQ 594 (596)
Q Consensus 565 ~P~~~~v~pPG~ymLFv~~-~gvPS~a~~v~ 594 (596)
+|.. ++|.|-+.|.. +|.=|.+--.+
T Consensus 52 VP~~----~~g~~~i~V~~~~G~~Sn~~~f~ 78 (81)
T cd00604 52 VPRV----APGNYNISVTTVDGVTSNGYNFE 78 (81)
T ss_pred eCCC----CCCceEEEEEECCCcccCcEeEE
Confidence 9953 67999999986 88888765444
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=27.40 E-value=8.9e+02 Score=26.92 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred EcCCCcEEEEe-cceeEEecCCCCe--EEEeeccc-cCCCCCCCCCceEEeccccccccccccCC-CEEEEEcCccCCcc
Q 035640 261 LSPDGNLFIFS-NNRSILLDPKANK--VVREFPIL-TGGSRNYPASAMSVLLPLKLRANNATATK-AKVLVCGGAQWDSF 335 (596)
Q Consensus 261 ~~~dG~Ifv~G-g~~~e~yDp~t~~--w~~~lp~m-p~~~R~~p~~g~av~lpl~~~~~~~~~~~-gkI~v~GG~~~~~~ 335 (596)
++.+|+||+.. ......+|..+++ |......- ......-...+.++ .+ ++||+.....
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-------------~~~~~V~v~~~~g---- 120 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-------------WDPRKVFFGTFDG---- 120 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-------------ccCCeEEEecCCC----
Q ss_pred ccccccccccCCCCceEEEEeeCCCCceEee-cCC--CCccccceEEeCCCeEEEEc--------CCCCCCCCCCCCCCC
Q 035640 336 YFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMP--SPRVMGDMVILPTEDILLLN--------GAKTGTSGWNDAEDP 404 (596)
Q Consensus 336 ~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~--~~R~~~~avvLpdG~V~vvG--------G~~~g~~g~~~~~~~ 404 (596)
.+..+|....+..|+.. .-. ..-...++.++-+++||+.. |..-
T Consensus 121 --------------~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g----------- 175 (488)
T cd00216 121 --------------RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG----------- 175 (488)
T ss_pred --------------eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCc-----------
Q ss_pred CcccEEEcCCCCCCCceEEecCCCc------------------ccccceEEEEcCCCcEEEecCCCC
Q 035640 405 NLVPALYTPRGPSRQRFKELAAGTI------------------PRMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 405 ~~s~e~YDP~t~~g~~Wt~~a~~~~------------------~R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
.+.++|.+|. ...|+.-..... +....+.++-..+|+||+..++.+
T Consensus 176 --~v~alD~~TG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~ 239 (488)
T cd00216 176 --ALRAYDVETG-KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGS 239 (488)
T ss_pred --EEEEEECCCC-ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCC
No 138
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=27.03 E-value=1.9e+02 Score=30.25 Aligned_cols=92 Identities=22% Similarity=0.213 Sum_probs=61.7
Q ss_pred ceEEEEcCCCcEEEecCCCCCccccCCCCCCcceEEEEcCCCCCCCCCCCCCeeeeCCCCCeeecCCeEEEEEEeccccc
Q 035640 434 HSSSVLLPDGTVLVAGSNTHNGYILDAKYPTELRVEKFSPPYLDPSLAWLRPSIVVDSSDKVIHYGQRFSVKVKSNELTV 513 (596)
Q Consensus 434 hs~a~LlpDG~Vlv~GG~~~~~~~~~~~~p~~~~vE~y~Ppyl~~~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~ 513 (596)
|.+.+|.-+|+||.+|=+-.+.+-.. ....|+|+||-..- .-|.|+ .|..|..|+|-+++.
T Consensus 120 nHTl~ltdtG~v~afGeNK~GQlGlg-----n~~~~v~s~~~~~~----~~~~v~------~v~cga~ftv~l~~~---- 180 (443)
T KOG1427|consen 120 NHTLVLTDTGQVLAFGENKYGQLGLG-----NAKNEVESTPLPCV----VSDEVT------NVACGADFTVWLSST---- 180 (443)
T ss_pred CcEEEEecCCcEEEeccccccccccc-----ccccccccCCCccc----cCccce------eeccccceEEEeecc----
Confidence 45677788999999997654433221 22458888887642 233343 367899999988752
Q ss_pred cccCeEEEEEEeCCcccccC----CCCCceEEeeeee
Q 035640 514 KNRDDLKLTMYAPAFTTHGI----SMNQRLLILSLVK 546 (596)
Q Consensus 514 ~~~~~~~v~lv~~~~~THs~----n~~QR~v~L~~~~ 546 (596)
.++..+-|-..|---|.. ||+.-.|.|.|..
T Consensus 181 --~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 181 --ESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred --cceeecCCccccccccCcchhhccccccceeeeec
Confidence 467777777777766664 7777777777754
No 139
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.61 E-value=7e+02 Score=25.44 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=75.8
Q ss_pred cCCccccCCCccccCCCCCceEeccCCCcccceeeeeccCCCEEEEEeeeccCCCCCCCCCCCCCccccccccCccccce
Q 035640 42 TGNDANDDGNKIAETGYNGKWELVSENSGVSAMHAILLPKINKVLMYDATVWRTSKIPLPPQKMPCRVADHITGELDCWC 121 (596)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~g~W~~v~~~~~~~a~~~~ll~~~gkV~~~g~~~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~ 121 (596)
++|=+..-|+ +.+.--|.++.+ .-+|..-- +...|+=..... .++++- ..|| -.
T Consensus 28 dGnY~ltcGs----drtvrLWNp~rg----~liktYsg-hG~EVlD~~~s~-Dnskf~-s~Gg---------------Dk 81 (307)
T KOG0316|consen 28 DGNYCLTCGS----DRTVRLWNPLRG----ALIKTYSG-HGHEVLDAALSS-DNSKFA-SCGG---------------DK 81 (307)
T ss_pred CCCEEEEcCC----CceEEeeccccc----ceeeeecC-CCceeeeccccc-cccccc-cCCC---------------Cc
Confidence 3455555565 666677877643 13455443 444455444332 223222 1221 12
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
.+.+||..|++...----+..--....+-.+..+++.|+++ .++++||=. ++...++. -+...+-.-+++.+. +
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR-S~s~ePiQ-ildea~D~V~Si~v~-~ 155 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR-SRSFEPIQ-ILDEAKDGVSSIDVA-E 155 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc-cCCCCccc-hhhhhcCceeEEEec-c
Confidence 47899999987543211111100111122356677888875 678999966 66655543 256667666677773 3
Q ss_pred cEEEEcCCCCCcEEEe
Q 035640 202 GFIVVGGRGAFSYEYI 217 (596)
Q Consensus 202 ~VyViGG~~~~~~E~y 217 (596)
--|++|+...++..|
T Consensus 156 -heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTY 170 (307)
T ss_pred -cEEEeeccCCcEEEE
Confidence 344566655566666
No 140
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.60 E-value=8.2e+02 Score=26.25 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred ccceEEEcCCCc-EEEEec-----------ceeEEecCCCCeEEEeeccccCCCC--CCCCCceEEeccccccccccccC
Q 035640 255 LYPFVYLSPDGN-LFIFSN-----------NRSILLDPKANKVVREFPILTGGSR--NYPASAMSVLLPLKLRANNATAT 320 (596)
Q Consensus 255 ~yp~~~~~~dG~-Ifv~Gg-----------~~~e~yDp~t~~w~~~lp~mp~~~R--~~p~~g~av~lpl~~~~~~~~~~ 320 (596)
..|+..+.+||+ ||+... ...++||..+.+-...++. |..+| .-+.....++-|
T Consensus 47 ~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~-p~~p~~~~~~~~~~~~ls~----------- 114 (352)
T TIGR02658 47 FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL-PEGPRFLVGTYPWMTSLTP----------- 114 (352)
T ss_pred CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-CCCchhhccCccceEEECC-----------
Q ss_pred CCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCccccce------EEeCCCeEEEE
Q 035640 321 KAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDM------VILPTEDILLL 388 (596)
Q Consensus 321 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~a------vvLpdG~V~vv 388 (596)
+||.+.+--.+ ..+++.++|+. +.+-..+ +.+-++....+ +...||+.+.+
T Consensus 115 dgk~l~V~n~~---------------p~~~V~VvD~~--~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 115 DNKTLLFYQFS---------------PSPAVGVVDLE--GKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred CCCEEEEecCC---------------CCCEEEEEECC--CCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=25.94 E-value=1.2e+03 Score=27.76 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=44.1
Q ss_pred eEEEEeCCCCCEE-eCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccC
Q 035640 122 HSVLFDFETSELT-ALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPD 200 (596)
Q Consensus 122 ~~~~yDp~t~~w~-~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~d 200 (596)
.+.+||..+.+.. .+.. ....|...-.-.+|.++++|+.+ ..+.+||.. +.+ ..... +....-.-+.+...+
T Consensus 599 ~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~d---g~I~iwD~~-~~~-~~~~~-~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSAD---HKVYYYDLR-NPK-LPLCT-MIGHSKTVSYVRFVD 671 (793)
T ss_pred EEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCC---CeEEEEECC-CCC-ccceE-ecCCCCCEEEEEEeC
Confidence 4778888765432 2211 11112111112468999998754 479999976 322 11101 111111112233347
Q ss_pred CcEEEEcCCCCCcEEEe
Q 035640 201 GGFIVVGGRGAFSYEYI 217 (596)
Q Consensus 201 G~VyViGG~~~~~~E~y 217 (596)
+..++.|+.++ ++.+|
T Consensus 672 ~~~lvs~s~D~-~ikiW 687 (793)
T PLN00181 672 SSTLVSSSTDN-TLKLW 687 (793)
T ss_pred CCEEEEEECCC-EEEEE
Confidence 88888887654 46666
No 142
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=25.78 E-value=5.6e+02 Score=24.47 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=42.9
Q ss_pred CCeeecCCeEEEEEEeccccccccCeEEEEEEeCCcccccCCCCCceEEeeeeeeeeccCCCCCCceEEEEEcCCCCCcC
Q 035640 493 DKVIHYGQRFSVKVKSNELTVKNRDDLKLTMYAPAFTTHGISMNQRLLILSLVKVIKNVGPATEGLHDIIALAPSSGAVA 572 (596)
Q Consensus 493 p~~~~~g~~~~v~~~~~~~~~~~~~~~~v~lv~~~~~THs~n~~QR~v~L~~~~~~~~~~~~~~g~~~~~v~~P~~~~v~ 572 (596)
|..+..|+.|++++-... +......|.+...+........ ....+. +.+ +.+++++|
T Consensus 144 P~~l~~g~~~~~~vl~~G---kPl~~a~V~~~~~~~~~~~~~~-----~~~~~T-------D~~--G~~~~~~~------ 200 (215)
T PF10670_consen 144 PYKLKAGDPLPFQVLFDG---KPLAGAEVEAFSPGGWYDVEHE-----AKTLKT-------DAN--GRATFTLP------ 200 (215)
T ss_pred cccccCCCEEEEEEEECC---eEcccEEEEEEECCCccccccc-----eEEEEE-------CCC--CEEEEecC------
Confidence 677889998888877532 2334578888888766533322 222322 234 47777665
Q ss_pred CCcceEEEEEc
Q 035640 573 PPGYYLLYVVY 583 (596)
Q Consensus 573 pPG~ymLFv~~ 583 (596)
-||.|||-+..
T Consensus 201 ~~G~wli~a~~ 211 (215)
T PF10670_consen 201 RPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEE
Confidence 46999998864
No 143
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=25.59 E-value=1.4e+02 Score=31.15 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=47.2
Q ss_pred cCCCCccccce-EEeCCCe--EEEEcCCCCCC------CCCCCCCCCCcccEEEcCCCCCCCceE--EecCCCcccccce
Q 035640 367 RMPSPRVMGDM-VILPTED--ILLLNGAKTGT------SGWNDAEDPNLVPALYTPRGPSRQRFK--ELAAGTIPRMYHS 435 (596)
Q Consensus 367 ~M~~~R~~~~a-vvLpdG~--V~vvGG~~~g~------~g~~~~~~~~~s~e~YDP~t~~g~~Wt--~~a~~~~~R~yhs 435 (596)
..|.+|+.|+. |+--.|| +.++||...=. .-|+.--+-.-.+.+.|.+-. -.+ .+..+......|-
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFHv 159 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFHV 159 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEEE
Confidence 78999999864 3344454 45677764311 112211111123455566655 443 4566777777884
Q ss_pred EEEEcCCCcEEEecCCC
Q 035640 436 SSVLLPDGTVLVAGSNT 452 (596)
Q Consensus 436 ~a~LlpDG~Vlv~GG~~ 452 (596)
+- --+..||+.||-.
T Consensus 160 sl--ar~D~VYilGGHs 174 (337)
T PF03089_consen 160 SL--ARNDCVYILGGHS 174 (337)
T ss_pred EE--ecCceEEEEccEE
Confidence 43 3499999999964
No 144
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=25.54 E-value=1.6e+02 Score=28.40 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=36.5
Q ss_pred EeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCC
Q 035640 379 ILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSN 451 (596)
Q Consensus 379 vLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~ 451 (596)
--|+|+.++++|... .. -.+++||.++. +.+....... .+...--||||-+++-..
T Consensus 108 wsP~G~~l~~~g~~n-~~---------G~l~~wd~~~~-----~~i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGN-LN---------GDLEFWDVRKK-----KKISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred ECCCCCEEEEEEccC-CC---------cEEEEEECCCC-----EEeeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 359999999999741 11 15799997643 4454444332 234456799999998653
No 145
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=25.30 E-value=9.1e+02 Score=26.32 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=41.4
Q ss_pred EeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCC-----ceeecCcCCCCcc-cccEEEEcc
Q 035640 126 FDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGC-----DWREYPTALADPR-WYSTQVTLP 199 (596)
Q Consensus 126 yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~-----~W~~~~~~M~~~R-~y~s~~~L~ 199 (596)
+|.-...|.++.......-.+.....||.++++|.... -...-| . .. +|.+.. ++..+ -..++....
T Consensus 265 ~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~---l~~S~d-~-G~~~~~~~f~~~~--~~~~~~~l~~v~~~~ 337 (398)
T PLN00033 265 WEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG---LYVSKG-T-GLTEEDFDFEEAD--IKSRGFGILDVGYRS 337 (398)
T ss_pred cCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCce---EEEecC-C-CCcccccceeecc--cCCCCcceEEEEEcC
Confidence 44444457777655444434455678999999885431 111112 1 22 455442 33223 233455566
Q ss_pred CCcEEEEcCC
Q 035640 200 DGGFIVVGGR 209 (596)
Q Consensus 200 dG~VyViGG~ 209 (596)
|+.++++|..
T Consensus 338 d~~~~a~G~~ 347 (398)
T PLN00033 338 KKEAWAAGGS 347 (398)
T ss_pred CCcEEEEECC
Confidence 8899988864
No 146
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.72 E-value=4.7e+02 Score=27.43 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred eEEEEeCCCCCEE-eCcCC-CccccccCeecCCCcEEEE-cCCCCC-CCeEEEEeCCCCCceeecCcCCCCcccccEEEE
Q 035640 122 HSVLFDFETSELT-ALKLQ-TDTWCSSGGLTADGDLVST-GGFGGG-ANTVRYLSTCDGCDWREYPTALADPRWYSTQVT 197 (596)
Q Consensus 122 ~~~~yDp~t~~w~-~l~~~-~~~fc~~~~~l~dG~ilv~-GG~~~g-~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~ 197 (596)
...+|||.+.+-- .+... ...|...+++.+||++|-. -+..+. .--+-+||-. ........--..+-.-|-++.
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~l 169 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTL 169 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEE
Confidence 5788999876532 22333 4568888999999997654 333232 2346678853 344443320123334567888
Q ss_pred ccCCcEEEEc
Q 035640 198 LPDGGFIVVG 207 (596)
Q Consensus 198 L~dG~VyViG 207 (596)
++||+.+|+-
T Consensus 170 m~DGrtlvva 179 (366)
T COG3490 170 MADGRTLVVA 179 (366)
T ss_pred ecCCcEEEEe
Confidence 9999988873
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.42 E-value=6.1e+02 Score=28.57 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=77.8
Q ss_pred CcEEEEecceeEEecCCCCeEEEeeccccCC-CCCCCCCceEEeccccccccccccCCCEEEEEcCccCCcccccccccc
Q 035640 265 GNLFIFSNNRSILLDPKANKVVREFPILTGG-SRNYPASAMSVLLPLKLRANNATATKAKVLVCGGAQWDSFYFSETKKQ 343 (596)
Q Consensus 265 G~Ifv~Gg~~~e~yDp~t~~w~~~lp~mp~~-~R~~p~~g~av~lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 343 (596)
-++|.-|-..+-+||...-.=...+..++-. +.+| --++-++| +|+-|++||..
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdny--iRSckL~p-----------dgrtLivGGea------------ 486 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNY--IRSCKLLP-----------DGRTLIVGGEA------------ 486 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCCCccccccccCcccc--eeeeEecC-----------CCceEEecccc------------
Confidence 3455444344566776532111123333321 2344 33555554 89999999942
Q ss_pred ccCCCCceEEEEeeCCCCceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceE
Q 035640 344 FFPALQDCGRIDITKPNAVWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFK 422 (596)
Q Consensus 344 ~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt 422 (596)
+++.+.|+..|+..-..+ +-.-+-.++= .+-||-||...-=.+ | .+.+||-... +
T Consensus 487 -----stlsiWDLAapTprikaeltssapaCyAL-a~spDakvcFsccsd-G------------nI~vwDLhnq-----~ 542 (705)
T KOG0639|consen 487 -----STLSIWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCCSD-G------------NIAVWDLHNQ-----T 542 (705)
T ss_pred -----ceeeeeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeeccC-C------------cEEEEEcccc-----e
Confidence 345667887666665555 4433445552 456888887543211 1 3578887665 2
Q ss_pred EecCCCcccccceEEEEcCCCcEEEecCCCC
Q 035640 423 ELAAGTIPRMYHSSSVLLPDGTVLVAGSNTH 453 (596)
Q Consensus 423 ~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~ 453 (596)
.+....----..|+-.+-+||.=+=.||-++
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 3333333333456666778898888888654
No 148
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.04 E-value=7.9e+02 Score=25.18 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=40.0
Q ss_pred EEEEeCCCCCEEeCcCCCccccccCe-ecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCc-----CCC---Cccccc
Q 035640 123 SVLFDFETSELTALKLQTDTWCSSGG-LTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPT-----ALA---DPRWYS 193 (596)
Q Consensus 123 ~~~yDp~t~~w~~l~~~~~~fc~~~~-~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~-----~M~---~~R~y~ 193 (596)
..++|.++++.+..-.-+.-.-+.-+ .-.++.|+ .|+. || .+|++|-+ +.+-..+-. ++. .+||--
T Consensus 138 ~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~E-DG--tvRvWd~k-t~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 138 IYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAE-DG--TVRVWDTK-TQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred EEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCC-Cc--cEEEEecc-ccceeEEeccccChhhcCcccCceeE
Confidence 56788888887654322211111000 11245553 4443 33 47778876 554433211 122 455643
Q ss_pred EEEEccCCcEEEEcCCC
Q 035640 194 TQVTLPDGGFIVVGGRG 210 (596)
Q Consensus 194 s~~~L~dG~VyViGG~~ 210 (596)
+ ... |-.-+|.||-.
T Consensus 213 a-la~-~edWlvCGgGp 227 (325)
T KOG0649|consen 213 A-LAV-NEDWLVCGGGP 227 (325)
T ss_pred E-Eec-cCceEEecCCC
Confidence 3 333 66788888853
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.02 E-value=7.7e+02 Score=25.94 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=46.9
Q ss_pred EEEEeCCCCCEEeCcC-CCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceee--cCcCCCCc-ccccEEEEc
Q 035640 123 SVLFDFETSELTALKL-QTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWRE--YPTALADP-RWYSTQVTL 198 (596)
Q Consensus 123 ~~~yDp~t~~w~~l~~-~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~--~~~~M~~~-R~y~s~~~L 198 (596)
..+|||....-..... ....+| ....|..||+|+.+ +.+.+||.. +.+--. -..++... | +++.+
T Consensus 118 ik~wD~R~~~~~~~~d~~kkVy~----~~v~g~~LvVg~~~---r~v~iyDLR-n~~~~~q~reS~lkyqtR---~v~~~ 186 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGTFDQGKKVYC----MDVSGNRLVVGTSD---RKVLIYDLR-NLDEPFQRRESSLKYQTR---CVALV 186 (323)
T ss_pred EEEEeccccccccccccCceEEE----EeccCCEEEEeecC---ceEEEEEcc-cccchhhhccccceeEEE---EEEEe
Confidence 5777776522111111 112344 23467888888764 678899976 332110 01112211 2 46677
Q ss_pred cCCcEEEEcCCCCC-cEEEe-CC
Q 035640 199 PDGGFIVVGGRGAF-SYEYI-PP 219 (596)
Q Consensus 199 ~dG~VyViGG~~~~-~~E~y-P~ 219 (596)
+++.=|++|-.++. .+|++ +.
T Consensus 187 pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred cCCCceEEEeecceEEEEccCCc
Confidence 88888988866654 46776 44
No 150
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=23.91 E-value=6.4e+02 Score=24.08 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=16.9
Q ss_pred EcCCCcEEEEec-ceeEEecCCCCe
Q 035640 261 LSPDGNLFIFSN-NRSILLDPKANK 284 (596)
Q Consensus 261 ~~~dG~Ifv~Gg-~~~e~yDp~t~~ 284 (596)
+..+++||+... .....+|..+++
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSC
T ss_pred eecccccccccceeeeEecccCCcc
Confidence 456788887763 467789977765
No 151
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=23.78 E-value=8.9e+02 Score=25.66 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=34.9
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeec
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREY 182 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~ 182 (596)
...+||..+++.+.+...... .......+||+-+++....++...+.++|.. +.....+
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l 273 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRL 273 (417)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEEC
Confidence 466789988877665533221 1224567898755443323344578888987 6655544
No 152
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.61 E-value=3.3e+02 Score=30.82 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCCEEEEEcCccCCccccccccccccCCCCceEEEEeeCCCCceEee-cCCCCcc-------ccceEEeCCCeEEEEcCC
Q 035640 320 TKAKVLVCGGAQWDSFYFSETKKQFFPALQDCGRIDITKPNAVWKKE-RMPSPRV-------MGDMVILPTEDILLLNGA 391 (596)
Q Consensus 320 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~id~~~~~~~W~~~-~M~~~R~-------~~~avvLpdG~V~vvGG~ 391 (596)
.+++||++... ..+..+|.......|+.. ..+.... ...++++-+++||+....
T Consensus 68 ~~g~vyv~s~~------------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d 129 (527)
T TIGR03075 68 VDGVMYVTTSY------------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD 129 (527)
T ss_pred ECCEEEEECCC------------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC
Confidence 47888886542 135567766445678865 3221100 011245668888874321
Q ss_pred CCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCccccc-ceEEEEcCCCcEEEec
Q 035640 392 KTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMY-HSSSVLLPDGTVLVAG 449 (596)
Q Consensus 392 ~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~y-hs~a~LlpDG~Vlv~G 449 (596)
. .+.++|.+|.+ ..|+.-.. .....+ ..++-++-+|+|++..
T Consensus 130 g--------------~l~ALDa~TGk-~~W~~~~~-~~~~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 130 A--------------RLVALDAKTGK-VVWSKKNG-DYKAGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred C--------------EEEEEECCCCC-EEeecccc-cccccccccCCcEEECCEEEEee
Confidence 1 35788887752 25754221 111111 1222334488988864
No 153
>PRK04922 tolB translocation protein TolB; Provisional
Probab=23.06 E-value=9.8e+02 Score=25.92 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...+||+.+++.+.+...... .......+||+-+++.....+...+..+|.. +.++..+.. ..+...+...-+||
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt~---~g~~~~~~~~SpDG 347 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLTF---QGNYNARASVSPDG 347 (433)
T ss_pred eEEEEECCCCCeEECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCC
Confidence 466789988888777532211 1223567899877765443444567888876 666654421 12333344555688
Q ss_pred cEEEEc
Q 035640 202 GFIVVG 207 (596)
Q Consensus 202 ~VyViG 207 (596)
+.+++.
T Consensus 348 ~~Ia~~ 353 (433)
T PRK04922 348 KKIAMV 353 (433)
T ss_pred CEEEEE
Confidence 766654
No 154
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.35 E-value=4e+02 Score=27.29 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=13.2
Q ss_pred cEEEEcCCCCCCCeEEEEeCCCCCcee
Q 035640 154 DLVSTGGFGGGANTVRYLSTCDGCDWR 180 (596)
Q Consensus 154 ~ilv~GG~~~g~~~v~~fdP~~t~~W~ 180 (596)
+=|+.||.+. +-+++.|| .++|.
T Consensus 176 krlvSgGcDn-~VkiW~~~---~~~w~ 198 (299)
T KOG1332|consen 176 KRLVSGGCDN-LVKIWKFD---SDSWK 198 (299)
T ss_pred ceeeccCCcc-ceeeeecC---Ccchh
Confidence 4588899762 33455555 34554
No 155
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.17 E-value=1.8e+02 Score=20.04 Aligned_cols=36 Identities=6% Similarity=0.064 Sum_probs=18.6
Q ss_pred ceEee-cCCCCccccceEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCC
Q 035640 362 VWKKE-RMPSPRVMGDMVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRG 415 (596)
Q Consensus 362 ~W~~~-~M~~~R~~~~avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t 415 (596)
.|+.. +- +... +.++-||+||+.+... .+.++|+++
T Consensus 4 ~W~~~~~~---~~~~-~~~v~~g~vyv~~~dg--------------~l~ald~~t 40 (40)
T PF13570_consen 4 LWSYDTGG---PIWS-SPAVAGGRVYVGTGDG--------------NLYALDAAT 40 (40)
T ss_dssp EEEEE-SS------S---EECTSEEEEE-TTS--------------EEEEEETT-
T ss_pred eEEEECCC---CcCc-CCEEECCEEEEEcCCC--------------EEEEEeCCC
Confidence 47665 32 2333 3456699998876531 457778764
No 156
>PRK02889 tolB translocation protein TolB; Provisional
Probab=21.99 E-value=1e+03 Score=25.76 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=43.9
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
+...+|..+++.+.+.... .........+||+.+++.....+...+..+|.. +.+...+. . ......+...-+||
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~g~~~~lt--~-~g~~~~~~~~SpDG 339 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-GGAAQRVT--F-TGSYNTSPRISPDG 339 (427)
T ss_pred eEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-CCceEEEe--c-CCCCcCceEECCCC
Confidence 4455677777766664321 122234577899876664433344567777765 45444332 1 12222234455688
Q ss_pred cEEEEcCC
Q 035640 202 GFIVVGGR 209 (596)
Q Consensus 202 ~VyViGG~ 209 (596)
+.++....
T Consensus 340 ~~Ia~~s~ 347 (427)
T PRK02889 340 KLLAYISR 347 (427)
T ss_pred CEEEEEEc
Confidence 76665443
No 157
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.47 E-value=1.1e+03 Score=25.86 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=36.5
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYP 183 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~ 183 (596)
...++|+.+++.+.+...... -......+||+-+++-...++...+.++|.. +.+.+.+.
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~lt 302 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRIT 302 (448)
T ss_pred EEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEECc
Confidence 356778888877666533211 1134567899855543333345678889987 77766553
No 158
>PRK00178 tolB translocation protein TolB; Provisional
Probab=20.72 E-value=1.1e+03 Score=25.43 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=47.8
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccCC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPDG 201 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~dG 201 (596)
...+||..+++.+.+..... ........+||+-+++.....+...+..+|.. +.++..+.. ..+.......-+||
T Consensus 268 ~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt~---~~~~~~~~~~Spdg 342 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVTF---VGNYNARPRLSADG 342 (430)
T ss_pred eEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccceEECCCC
Confidence 35677999998887754221 12223456788766555444445678888887 666665431 12222233445687
Q ss_pred cEEEEcCC
Q 035640 202 GFIVVGGR 209 (596)
Q Consensus 202 ~VyViGG~ 209 (596)
+.++.-..
T Consensus 343 ~~i~~~~~ 350 (430)
T PRK00178 343 KTLVMVHR 350 (430)
T ss_pred CEEEEEEc
Confidence 76665443
No 159
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.50 E-value=4.6e+02 Score=30.70 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=35.1
Q ss_pred eEEeCCCeEEEEcCCCCCCCCCCCCCCCCcccEEEcCCCCCCCceEEecCCCcccccceEEEEcCCCcEEEecCCCCC
Q 035640 377 MVILPTEDILLLNGAKTGTSGWNDAEDPNLVPALYTPRGPSRQRFKELAAGTIPRMYHSSSVLLPDGTVLVAGSNTHN 454 (596)
Q Consensus 377 avvLpdG~V~vvGG~~~g~~g~~~~~~~~~s~e~YDP~t~~g~~Wt~~a~~~~~R~yhs~a~LlpDG~Vlv~GG~~~~ 454 (596)
...-|+|+-++.|+.+ | .+.+||-.+. + .+..+..-..--.+...=.||.||++||..|.
T Consensus 583 l~~Sp~Gr~LaSg~ed-~------------~I~iWDl~~~---~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 583 LAFSPCGRYLASGDED-G------------LIKIWDLANG---S--LVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred EEEcCCCceEeecccC-C------------cEEEEEcCCC---c--chhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 4557899988888764 1 4689997775 1 11111111111111112359999999998775
No 160
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=20.25 E-value=1.1e+03 Score=25.30 Aligned_cols=140 Identities=16% Similarity=0.266 Sum_probs=69.2
Q ss_pred eeEEEEeCCCCCEEeC-cCC---------CccccccCeecCCCcEEEEcCCCCC---CCeEEEEeCCCCCceeecCcCC-
Q 035640 121 CHSVLFDFETSELTAL-KLQ---------TDTWCSSGGLTADGDLVSTGGFGGG---ANTVRYLSTCDGCDWREYPTAL- 186 (596)
Q Consensus 121 ~~~~~yDp~t~~w~~l-~~~---------~~~fc~~~~~l~dG~ilv~GG~~~g---~~~v~~fdP~~t~~W~~~~~~M- 186 (596)
..+.+-|.+.+++... +.. .+.| .+...||+++.+.=..+| .+..++|++. .+-....+. +
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F---~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~-~dp~f~~~~-~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGF---SMLCGDGSLLTVTLDADGKEAQKSTKVFDPD-DDPLFEHPA-YS 192 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEE---EEEETTSCEEEEEETSTSSEEEEEEEESSTT-TS-B-S--E-EE
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCCCce---EEEecCCceEEEEECCCCCEeEeeccccCCC-Ccccccccc-eE
Confidence 3567788888877532 111 1222 244457877776422222 3455789987 544433321 2
Q ss_pred -CCcccccEEEEccCCcEEE--EcCCCCCcEEEeCCCCCCCCCcccccCcccccccCCCcCCcceeeeccCccceEEEcC
Q 035640 187 -ADPRWYSTQVTLPDGGFIV--VGGRGAFSYEYIPPEGQSNKSPVFFPLLKDTTNDLKGIDGQEMFLIENNLYPFVYLSP 263 (596)
Q Consensus 187 -~~~R~y~s~~~L~dG~VyV--iGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~yp~~~~~~ 263 (596)
...|||. .+. +|+||. ++|.. .++-+ .|. ++... ...+-|| +-.+...++--.
T Consensus 193 ~~~~~~~F--~Sy-~G~v~~~dlsg~~---~~~~~---~~~-------~~t~~-------e~~~~Wr-PGG~Q~~A~~~~ 248 (342)
T PF06433_consen 193 RDGGRLYF--VSY-EGNVYSADLSGDS---AKFGK---PWS-------LLTDA-------EKADGWR-PGGWQLIAYHAA 248 (342)
T ss_dssp TTTTEEEE--EBT-TSEEEEEEETTSS---EEEEE---EEE-------SS-HH-------HHHTTEE-E-SSS-EEEETT
T ss_pred CCCCeEEE--Eec-CCEEEEEeccCCc---ccccC---ccc-------ccCcc-------ccccCcC-Ccceeeeeeccc
Confidence 2235654 455 899998 45532 22210 011 00000 0001232 223344555557
Q ss_pred CCcEEEEec-----------ceeEEecCCCCeEEEee
Q 035640 264 DGNLFIFSN-----------NRSILLDPKANKVVREF 289 (596)
Q Consensus 264 dG~Ifv~Gg-----------~~~e~yDp~t~~w~~~l 289 (596)
.++||+.-. ...|.||.++.+-...+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE
Confidence 889998742 24789999998855444
No 161
>PRK02889 tolB translocation protein TolB; Provisional
Probab=20.23 E-value=1.1e+03 Score=25.49 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCccc-ccEEEEccC
Q 035640 122 HSVLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRW-YSTQVTLPD 200 (596)
Q Consensus 122 ~~~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~-y~s~~~L~d 200 (596)
...+||..+++-+.+...... -......+||+.+++....++...+..+|.. +.....+.. ... .....--+|
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt~----~~~~~~~~~wSpD 294 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKGS-NSAPAWSPDGRTLAVALSRDGNSQIYTVNAD-GSGLRRLTQ----SSGIDTEPFFSPD 294 (427)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEEccCCCceEEEEECC-CCCcEECCC----CCCCCcCeEEcCC
Confidence 367788888877666432211 1234567899766654333445667778876 554444321 111 112334568
Q ss_pred CcEEEE
Q 035640 201 GGFIVV 206 (596)
Q Consensus 201 G~VyVi 206 (596)
|+-+++
T Consensus 295 G~~l~f 300 (427)
T PRK02889 295 GRSIYF 300 (427)
T ss_pred CCEEEE
Confidence 875554
No 162
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.21 E-value=8.1e+02 Score=25.65 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEeCCCCCceeecCcCCCCcccccEEEEccC---CcEEEEcC
Q 035640 147 GGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWREYPTALADPRWYSTQVTLPD---GGFIVVGG 208 (596)
Q Consensus 147 ~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~~~~~~M~~~R~y~s~~~L~d---G~VyViGG 208 (596)
.++-.+|.+++..... ...+.+|+|. ...-.+ -..++..++.+++.. ..+||..-
T Consensus 218 ~~vDadG~lw~~a~~~--g~~v~~~~pd-G~l~~~----i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 218 MAVDADGNLWVAAVWG--GGRVVRFNPD-GKLLGE----IKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred eEEeCCCCEEEecccC--CceEEEECCC-CcEEEE----EECCCCCCccceEeCCCcCEEEEEec
Confidence 4456789999755442 1468999996 332222 233446677777743 45565543
No 163
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=20.15 E-value=1.9e+02 Score=31.51 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=46.3
Q ss_pred EEEeCCCCCEEeCcCCCccccccCeecCCCcEEEEcCCCCCCCeEEEEeCCCCCcee-ecCcCCCCcccccEEEEccCCc
Q 035640 124 VLFDFETSELTALKLQTDTWCSSGGLTADGDLVSTGGFGGGANTVRYLSTCDGCDWR-EYPTALADPRWYSTQVTLPDGG 202 (596)
Q Consensus 124 ~~yDp~t~~w~~l~~~~~~fc~~~~~l~dG~ilv~GG~~~g~~~v~~fdP~~t~~W~-~~~~~M~~~R~y~s~~~L~dG~ 202 (596)
.+||..|++=--+..-+..--...++-+||.++.+||.+. -.+++|-. +..-. -+.. .-+--.++.--+||.
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---~~RvWDlR-tgr~im~L~g---H~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---LGRVWDLR-TGRCIMFLAG---HIKEILSVAFSPNGY 358 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCccc---hhheeecc-cCcEEEEecc---cccceeeEeECCCce
Confidence 5666666554333333433223356678999999999863 23566655 43321 1111 112234566677999
Q ss_pred EEEEcCCCC
Q 035640 203 FIVVGGRGA 211 (596)
Q Consensus 203 VyViGG~~~ 211 (596)
.++.||.++
T Consensus 359 ~lATgs~Dn 367 (459)
T KOG0272|consen 359 HLATGSSDN 367 (459)
T ss_pred EEeecCCCC
Confidence 999988764
Done!