Your job contains 1 sequence.
>035641
MEKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRH
LKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGC
STAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPK
QVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPE
ELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMT
TYVTCAECNKRWKC
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035641
(314 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 542 2.7e-52 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 398 4.9e-37 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 393 1.7e-36 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 391 2.7e-36 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 391 2.7e-36 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 390 3.5e-36 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 389 4.4e-36 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 388 5.7e-36 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 387 7.2e-36 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 386 9.2e-36 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 307 3.9e-35 2
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 379 5.1e-35 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 376 1.1e-34 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 375 1.3e-34 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 375 1.3e-34 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 305 1.7e-34 2
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 303 2.1e-34 2
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 367 9.5e-34 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 366 1.2e-33 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 360 5.2e-33 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 360 5.2e-33 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 360 5.2e-33 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 360 5.2e-33 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 357 1.1e-32 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 355 1.8e-32 1
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 341 5.4e-31 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 339 8.8e-31 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 321 7.1e-29 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 313 5.0e-28 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 256 7.6e-27 2
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 256 7.6e-27 2
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 300 1.2e-26 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 299 1.5e-26 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 299 1.5e-26 1
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 295 4.0e-26 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 294 5.2e-26 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 286 3.6e-25 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 283 7.6e-25 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 288 2.3e-24 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 276 4.2e-24 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 270 1.8e-23 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 231 2.5e-19 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 206 1.1e-16 1
UNIPROTKB|B7Z4S1 - symbol:TCEA1 "Transcription elongation... 186 2.2e-14 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 163 7.5e-14 2
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 175 4.1e-13 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 200 7.8e-13 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 195 1.1e-12 1
UNIPROTKB|G3N3C0 - symbol:G3N3C0 "Uncharacterized protein... 173 1.5e-12 2
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 195 3.5e-12 2
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 192 7.4e-12 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 190 1.3e-11 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 195 1.7e-11 2
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 186 3.9e-11 1
UNIPROTKB|A0JNK7 - symbol:LOC504389 "Uncharacterized prot... 165 5.4e-11 2
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 166 5.8e-10 2
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 156 1.5e-09 2
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 166 7.8e-09 1
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 161 2.4e-08 1
UNIPROTKB|E2QWP2 - symbol:TCEANC "Uncharacterized protein... 152 2.4e-08 1
UNIPROTKB|F1SRI2 - symbol:TCEANC "Uncharacterized protein... 149 5.4e-08 1
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 150 6.9e-08 2
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 158 7.0e-08 1
UNIPROTKB|H0YF26 - symbol:TCEANC "Transcription elongatio... 143 1.3e-07 1
UNIPROTKB|Q8N8B7 - symbol:TCEANC "Transcription elongatio... 143 2.7e-07 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 137 2.8e-07 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 152 4.3e-07 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 151 4.4e-07 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 151 4.5e-07 1
RGD|1584894 - symbol:Tceanc "transcription elongation fac... 141 4.7e-07 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 143 8.9e-07 1
ASPGD|ASPL0000042794 - symbol:AN1777 species:162425 "Emer... 144 9.0e-07 1
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 144 1.7e-06 1
SGD|S000003824 - symbol:RPA12 "RNA polymerase I subunit A... 115 2.1e-06 1
MGI|MGI:2685236 - symbol:Tceanc "transcription elongation... 127 2.1e-06 2
CGD|CAL0004345 - symbol:RPC11 species:5476 "Candida albic... 114 2.7e-06 1
FB|FBgn0061362 - symbol:CG33785 species:7227 "Drosophila ... 114 2.7e-06 1
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 148 5.1e-06 2
CGD|CAL0006382 - symbol:RPA12 species:5476 "Candida albic... 111 5.8e-06 1
SGD|S000002452 - symbol:RPC11 "RNA polymerase III subunit... 110 7.5e-06 1
WB|WBGene00007616 - symbol:rpoa-12 species:6239 "Caenorha... 110 7.5e-06 1
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 126 1.1e-05 1
UNIPROTKB|F1N3E8 - symbol:POLR3K "DNA-directed RNA polyme... 104 3.4e-05 1
UNIPROTKB|E2QZU0 - symbol:POLR3K "DNA-directed RNA polyme... 104 3.4e-05 1
UNIPROTKB|F1PIF7 - symbol:ZNRD1 "DNA-directed RNA polymer... 104 3.4e-05 1
UNIPROTKB|Q9Y2Y1 - symbol:POLR3K "DNA-directed RNA polyme... 104 3.4e-05 1
UNIPROTKB|F2Z4X7 - symbol:POLR3K "DNA-directed RNA polyme... 104 3.4e-05 1
MGI|MGI:1914255 - symbol:Polr3k "polymerase (RNA) III (DN... 104 3.4e-05 1
UNIPROTKB|Q5FVH1 - symbol:Polr3k "DNA-directed RNA polyme... 104 3.4e-05 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 131 3.8e-05 1
UNIPROTKB|Q1RMP0 - symbol:ZNRD1 "DNA-directed RNA polymer... 102 5.6e-05 1
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 138 9.3e-05 3
UNIPROTKB|I3LRU2 - symbol:TCEB3 "Uncharacterized protein"... 125 0.00011 1
UNIPROTKB|G5EHE0 - symbol:MGCH7_ch7g875 "DNA-directed RNA... 99 0.00012 1
ZFIN|ZDB-GENE-040718-291 - symbol:polr3k "polymerase (RNA... 99 0.00012 1
ZFIN|ZDB-GENE-050320-131 - symbol:znrd1 "zinc ribbon doma... 99 0.00012 1
UNIPROTKB|A6QPU3 - symbol:TCEB3 "Uncharacterized protein"... 117 0.00013 1
GENEDB_PFALCIPARUM|PFB0290c - symbol:PFB0290c "transcript... 98 0.00016 1
UNIPROTKB|Q2M2S7 - symbol:POLR3K "DNA-directed RNA polyme... 98 0.00016 1
UNIPROTKB|O96159 - symbol:PFB0290c "DNA-directed RNA poly... 98 0.00016 1
WARNING: Descriptions of 20 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 132/290 (45%), Positives = 171/290 (58%)
Query: 26 EPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIV 85
E +V + D K PV L KS++ +K P KV ++K+
Sbjct: 104 EAKVNKM-DVEKPSNPAPVKVQKLQRGDSAKSIKVERKEPDNKVVTGVKI-----ERKVP 157
Query: 86 LGKETNGNKRNGSKLSV-DEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDS 144
K TNG K + +V DEK K S + + A K TA ++ D
Sbjct: 158 DIKVTNGTKIDYRGQAVKDEKVSKDNQSSMKAPAKAANAPPK-LTAMLK-------CNDP 209
Query: 145 MRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKL-RPMGVAEKR 203
+RDKIR+ L +AL RVA EA DD E + V A DP +VA SVE +MFEKL R G A+K
Sbjct: 210 VRDKIRELLVEALCRVAGEA-DDYE-RESVNASDPLRVAVSVESLMFEKLGRSTG-AQKL 266
Query: 204 KHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCE 263
K+RSIMFN+ D NPDLRRRVL GE++PE+L T++ E++ASD+R+QEN +IK K +F CE
Sbjct: 267 KYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKALFDCE 326
Query: 264 VPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
K +TDQFKC CG+ C+Y+QMQTRSADEPMTTYVTC C+ WK
Sbjct: 327 RGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWK 376
Score = 224 (83.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 76/252 (30%), Positives = 111/252 (44%)
Query: 1 MEKKLVTLF-GXXXXXXXXXXX-TNRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSL 58
ME L+ LF G S PEV +C DALK L+ FPVTYD LV+TQVGK L
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 59 RHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKS 118
R L KHP E +++ A++LL IWK K+V+ + K G+ + K K + +
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIWK-KVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPS--- 116
Query: 119 GCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEA-ADDEEITDRVKAR 177
A ++K D AK ++ D K ++ V E D ++T+ K
Sbjct: 117 -------NPAPVKVQKLQRGDSAKSIKVERKEPD-NKVVTGVKIERKVPDIKVTNGTKI- 167
Query: 178 DPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATM 237
D + A E+V + M K + + N +R + I E+ E L +
Sbjct: 168 DYRGQAVKDEKVSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDK--IRELLVEALCRV 225
Query: 238 TPEELASDERRQ 249
E A D R+
Sbjct: 226 AGE--ADDYERE 235
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 101/291 (34%), Positives = 161/291 (55%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL +T++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 30 DLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 88
Query: 93 NKRNGSK--LSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDK 148
+ K S + + +S++ + S +E A ++ PS A DS+R K
Sbjct: 89 DSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRVK 148
Query: 149 IRKDLEKALSRVASE----AADDEEITDRVK-ARDPKQVAASVERVMFEKLRPMGVAEKR 203
R+ L AL R + AD+EE+ +++ A+ P +F++L+ + K
Sbjct: 149 CREMLSAAL-RTGDDYIAIGADEEELGSQIEEAKAP----------IFQELKNTDMKYKN 197
Query: 204 KHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCE 263
+ RS + N+ D KNP+LR+ VL G + P++ A MT EE+ASDE ++ + + + + + +
Sbjct: 198 RVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQ 257
Query: 264 VPEKKKGT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+ K GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 258 MA-KTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 307
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 96/285 (33%), Positives = 156/285 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ L+K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRNGSKL-SVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKI 149
+ K ++ + + + ++ S S+ K++ S A DS+R K
Sbjct: 85 DPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVRLKC 144
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIM 209
R+ L AL D+ + + A D +++ + +E +++++R + K + RS +
Sbjct: 145 REMLAAALR------TGDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 210 FNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK 269
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTG 254
Query: 270 GT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 96/285 (33%), Positives = 155/285 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 5 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 63
Query: 93 NKRNGSK-LSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKI 149
+ K +V + + + ++ S+ K++ S A DS+R K
Sbjct: 64 DSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRLKC 123
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIM 209
R+ L AL D+ I + A D +++ + +E +++++R + K + RS +
Sbjct: 124 REMLAAALR------TGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 174
Query: 210 FNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK 269
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 175 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTG 233
Query: 270 GT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 234 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 96/285 (33%), Positives = 155/285 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRNGSK-LSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKI 149
+ K +V + + + ++ S+ K++ S A DS+R K
Sbjct: 85 DSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRLKC 144
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIM 209
R+ L AL D+ I + A D +++ + +E +++++R + K + RS +
Sbjct: 145 REMLAAALR------TGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 210 FNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK 269
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTG 254
Query: 270 GT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 95/285 (33%), Positives = 156/285 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRNGSKL-SVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKI 149
+ K ++ + + + ++ S S+ K++ S A DS+R K
Sbjct: 85 DSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSVRLKC 144
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIM 209
R+ L AL D+ + + A D +++ + +E +++++R + K + RS +
Sbjct: 145 REMLAAALR------TGDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 210 FNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK 269
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTG 254
Query: 270 GT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 95/284 (33%), Positives = 155/284 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRNGSK-LSVDEKFQKQTSDSNAVKSGCSTAKEKKATAS-IRKPSHADQAKDSMRDKIR 150
+ K ++ + + + ++ G S E A + + A DS+R K R
Sbjct: 85 DSEEKKKDTAITSQNSPEAREESSSGHGSSRKDEPNARDTYVSSFPRAPSTSDSVRLKCR 144
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL ++ I + A D +++ + +E +++++R + K + RS +
Sbjct: 145 EMLAAALR------TGEDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 195
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K G
Sbjct: 196 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTGG 254
Query: 271 T-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
T TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 255 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 298
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 94/285 (32%), Positives = 155/285 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRNGSK-LSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKI 149
+ K ++ + + + ++ S+ K++ S A DS+R K
Sbjct: 85 DPEEKKKDTAITSQNSPEAREESSSSGNVSSRKDETNARDTYVSSFPRAPSTSDSVRLKC 144
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIM 209
R+ L AL D+ + + A D +++ + +E +++++R + K + RS +
Sbjct: 145 REMLAAALR------TGDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 210 FNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK 269
N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA-KTG 254
Query: 270 GT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 98/286 (34%), Positives = 158/286 (55%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL +T++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 5 DLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 63
Query: 93 NKRNGSK--LSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDK 148
+ K S + + +S++ + S +E A ++ PS A DS+R K
Sbjct: 64 DSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRVK 123
Query: 149 IRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSI 208
R+ L AL D+ I + A D +++ ++ +F++L+ + K + RS
Sbjct: 124 CREMLSAALR------TGDDYIA--IGA-DEEELE-TIHTPIFQELKNTDMKYKNRVRSR 173
Query: 209 MFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKK 268
+ N+ D KNP+LR+ VL G + P++ A MT EE+ASDE ++ + + + + + ++ K
Sbjct: 174 IANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMA-KT 232
Query: 269 KGT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 233 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 101/289 (34%), Positives = 160/289 (55%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLG----K 88
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G K
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTEK 84
Query: 89 ETNGNKRNGSKLSVD--EKFQKQTSDSNAVKSGCST-AKEKKATASIRKPSHADQAKDSM 145
+ + K+ + S + E ++ TS N T A++ ++ R PS DS+
Sbjct: 85 DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPS----TSDSV 140
Query: 146 RDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKH 205
R K R+ L AL D+ I + A D +++ + +E +++++R + K +
Sbjct: 141 RLKCREMLAAALR------TGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRV 191
Query: 206 RSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVP 265
RS + N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + + ++
Sbjct: 192 RSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMA 251
Query: 266 EKKKGT-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
K GT TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 252 -KTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 307 (113.1 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 69/171 (40%), Positives = 104/171 (60%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL +A DD D D ++A+ +E ++++L+ + +
Sbjct: 185 DSVRDKCVEMLSAAL-----KAEDD--FKDYGVNCD--KLASEIEDHIYQELKSTDMKYR 235
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++PE +A MT EE+ASDE R+ + + + +
Sbjct: 236 NRVRSRISNLKDPRNPGLRRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQEAIREH 295
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD +CS C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 296 QMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 346
Score = 89 (36.4 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 30/126 (23%), Positives = 56/126 (44%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEK-VQNAASELLHIWKQKIVLGKETNG 92
D LK L + ++ LL +T++G ++ ++KH +K V + A L+ WK+ + + T G
Sbjct: 28 DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKG 87
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
+ K EK S ++G S ++K+ + D + R
Sbjct: 88 EREAREKAKKKEK--GLGSSGWKPEAGLSPPRKKEGGEPKTRRDSVDSRSSTTSSPKRPS 145
Query: 153 LEKALS 158
LE++ S
Sbjct: 146 LERSNS 151
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 95/282 (33%), Positives = 148/282 (52%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A P+T LL ST+VG S+ L+K E+V A L+ WK K++ +
Sbjct: 29 DLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK-KLLDASDAKA 87
Query: 93 NKRN-GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRK 151
+R G L + + D + + A +T I D++R+K R+
Sbjct: 88 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAP---STPRITTFPPVPVTCDAVRNKCRE 144
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL D + + + A D ++++A +E +F + + K + RS + N
Sbjct: 145 MLTAALQ------TDHDHVA--IGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSRISN 195
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNPDLRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 196 LKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQ 255
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C C K NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 256 TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 297
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 94/281 (33%), Positives = 142/281 (50%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A PVT LL ST+VG S+ L+K E+V A L+ WK+ +
Sbjct: 29 DLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDASDAKAR 88
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
+R G L K+ S++ +T I D++R K R+
Sbjct: 89 ERRRGGSLPTSSS--KEASEAQDPSRKRPELPRMPSTPRITTFPPVPVTCDAVRTKCREM 146
Query: 153 LEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNM 212
L AL D + + + A D + +A +E +F + + K + RS + N+
Sbjct: 147 LTAALQ------TDHDHVA--IGA-DCECLAGQIEECIFRDVGNTDMKYKNRVRSRLSNL 197
Query: 213 SDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTT 272
D KNP LRR+VL G +TP+++A MT EE+ASDE ++ + + + + + ++ T
Sbjct: 198 KDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQT 257
Query: 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
D F C C K NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 258 DLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 298
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 93/287 (32%), Positives = 145/287 (50%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCE-KVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K + +V + A L+ WK+ +
Sbjct: 30 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSLIKSWKKLLDEPAADKN 89
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPS------HADQAKDSMR 146
++ + + +TS +S S + K + + + A DS+R
Sbjct: 90 SEEKKKERTTPVVSPSETSPEPREESSSSNSSSKSESVDVTPNTLIATFPRAPGTSDSVR 149
Query: 147 DKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHR 206
K R+ L AL D+ IT D ++ A +E +F + + + K + R
Sbjct: 150 IKCREMLSNALQ------TGDDYITI---GSDCDELGAQIEECIFLEFKNTDMKYKNRVR 200
Query: 207 SIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPE 266
S + N+ D KNP+LRR VL G V+P+R+A MT EE+ASDE ++ + + + + +V
Sbjct: 201 SRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEAIRDHQVAT 260
Query: 267 KKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C C K C+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 261 SGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFCNECGNRWK 307
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 97/284 (34%), Positives = 150/284 (52%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ ++ + L ST++G S+ ++K E+VQ A L+ WK K++ G E
Sbjct: 28 DLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLIKAWK-KLLDGSEGKP 86
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKA--TASIRKPSHADQAKDSMRDKIR 150
++ G + K S+ + T K T A DS+R K R
Sbjct: 87 EEKKGES-PLQSSSSKDCPGSSDTSNKPETPKTPTTPVTPKFTMFPPAPVTTDSVRTKCR 145
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL D + T + A D + +AA +E ++++ + + K + RS +
Sbjct: 146 ELLVAALQ------TDGDHQT--IGA-DCEHMAAQIEDYIYQEFKSTDMKYKTRLRSRIS 196
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D+KNPDLRR VL G ++PER+A+MT EE+AS E ++ + + + + + ++ K G
Sbjct: 197 NLKDQKNPDLRRNVLCGNISPERIASMTAEEMASPELKEIRKALTKESIREHQL-SKVGG 255
Query: 271 T-TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
T TD F C C NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 256 TETDMFVCGKCKGKNCTYTQVQTRSADEPMTTFVLCNECGNRWK 299
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 305 (112.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 76/243 (31%), Positives = 126/243 (51%)
Query: 72 AASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATAS 131
+++ LL + L + + N R+GS + + ++ T+ + +S
Sbjct: 174 SSNHLLKRQSSEPKLERRDSTNSRSGSSPQAKKSCESKSKPETPKTPTTPTSPLSPSFSS 233
Query: 132 IRKP-SHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVM 190
P S Q DS+RDK + L AL D++ D + + + A +E +
Sbjct: 234 SAGPLSPRLQTGDSIRDKCIEMLTAALRT-------DDDYKDY--GTNCEAMGAEIEDYI 284
Query: 191 FEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQE 250
+++ + + K + RS + N+ D KNP+LR+ VL G + R+A+MT EE+ASDE +Q
Sbjct: 285 YQETKATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDELKQL 344
Query: 251 NEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310
+ + + + ++ + TTD +C C K NC+Y+Q+QTRSADEPMTT+V C EC
Sbjct: 345 RNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGN 404
Query: 311 RWK 313
RWK
Sbjct: 405 RWK 407
Score = 85 (35.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC--EKVQNAASELLHIWKQKIVLGKETN 91
D L+ L+ F +T LL T++G S+ ++KH C E V N A L+ WK+ + +
Sbjct: 28 DLLRELKDFNMTLKLLQDTRIGMSVNGIRKH-CTDEDVVNLAKILIKNWKRLLESAQNPK 86
Query: 92 GNKRNGSK 99
+ N K
Sbjct: 87 SERPNEVK 94
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 303 (111.7 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL A+D D D ++A+ +E ++++L+ + +
Sbjct: 184 DSVRDKCVEMLSAALK------AEDN-FKDYGVNCD--KLASEIEDHIYQELKSTDMKYR 234
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++PE +A MT EE+ASDE R+ + + + +
Sbjct: 235 NRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREH 294
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD +CS C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 295 QMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 345
Score = 86 (35.3 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 30/135 (22%), Positives = 59/135 (43%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEK-VQNAASELLHIWKQK 83
S + + D LK L + ++ LL +T++G ++ ++KH +K V + A L+ WK+
Sbjct: 19 SRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 78
Query: 84 IVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKD 143
+ + T G + K ++ SD ++G S ++K + D
Sbjct: 79 LDSPRTTKGEREEREKAKKEKGLG--CSDWKP-EAGLSPPRKKGGGEPKTRRDSVDSRSS 135
Query: 144 SMRDKIRKDLEKALS 158
+ R LE++ S
Sbjct: 136 TTSSPKRPSLERSNS 150
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 98/293 (33%), Positives = 151/293 (51%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCE-KVQNAASELLHIWKQKIVLGKETNG 92
D LK LQ + D+L T++G ++ L+K + +V A L+ WK+ + T
Sbjct: 29 DLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTP 88
Query: 93 NKR-------NGSKLSVDEKFQKQTSD-SNAVKSGCSTA---KEKKATASIRKPSHADQA 141
N N S S K +S S KS S++ KEKK + S + S
Sbjct: 89 NNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGG 148
Query: 142 K-DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVA 200
D++R K R+ L AL ++ E+ + +P+++AA +E ++ + +
Sbjct: 149 MTDAVRIKCREMLATAL-KIG-------EVPEG--CGEPEEMAAELEDAIYSEFNNTDMK 198
Query: 201 EKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMF 260
K + RS + N+ D KNP LR + G VT ++LA MTPEE+ASDE ++ E+ + +
Sbjct: 199 YKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAIN 258
Query: 261 KCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD KC+ C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 259 DAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 93/283 (32%), Positives = 148/283 (52%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 28 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 87
Query: 93 NKRNGSKLSVDE-KFQKQTSDSNAVKSGCS-TAKEKKATASIRKPSHADQAKDSMRDKIR 150
N+ G+ L K +T+D + K T + T + P D ++R+K R
Sbjct: 88 NQGRGTPLPTSSSKDASRTTDLSCKKPDPPRTPSTPRITTFPQVPITCD----AVRNKCR 143
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL D + + V + +++ +E +F + + K + RS +
Sbjct: 144 EMLTLALQ------TDHDHVAVGVNC---EHLSSQIEECIFLDVGNTDMKYKNRVRSRIS 194
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 195 NLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT 254
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 255 QTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 297
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 94/282 (33%), Positives = 145/282 (51%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKI-VLGKETN 91
D L+ L+A PVT LL ST+VG S+ L+K E+V A L+ WK+ + +
Sbjct: 5 DLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKAR 64
Query: 92 GNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRK 151
+R G + K + D + + + A P D++R+K R+
Sbjct: 65 EQRRAGPPPTSSSKEAPEAKDPSRKRP--ELPRVPSAPRITTFPP-VPVTCDAVRNKCRE 121
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL D + + V A D + ++A +E +F + + K + RS + N
Sbjct: 122 MLTAALQ------TDHDHMA--VGA-DCEGLSAQIEECIFRDVGNTDMKYKNRVRSRISN 172
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNPDLRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 173 LKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQ 232
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C C + NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 233 TDLFTCGRCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 274
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 92/283 (32%), Positives = 148/283 (52%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 28 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 87
Query: 93 NKRNGSKLSVDE-KFQKQTSDSNAVKSGCS-TAKEKKATASIRKPSHADQAKDSMRDKIR 150
++ G+ L K T+D + K T+ + T + P D ++R+K R
Sbjct: 88 DQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCD----AVRNKCR 143
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL D + + V + +++ +E +F + + K + RS +
Sbjct: 144 EMLTLALQ------TDHDHVAVGVSC---EHLSSQIEECIFLDVGNTDMKYKNRVRSRIS 194
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 195 NLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT 254
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 255 QTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 297
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 92/283 (32%), Positives = 147/283 (51%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 2 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 61
Query: 93 NKRNGSKLSVDE-KFQKQTSDSNAVKSGCS-TAKEKKATASIRKPSHADQAKDSMRDKIR 150
++ G+ L K T+D + K T+ + T + P D ++R+K R
Sbjct: 62 DQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCD----AVRNKCR 117
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL D + + V + +++ +E + L + K + RS +
Sbjct: 118 EMLTLALQ------TDHDHVAVGVSC---EHLSSQIEEYILLDLSGSQIGYKNRVRSRIS 168
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 169 NLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT 228
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 229 QTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 271
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 92/283 (32%), Positives = 148/283 (52%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 28 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 87
Query: 93 NKRNGSKLSVDE-KFQKQTSDSNAVKSGCS-TAKEKKATASIRKPSHADQAKDSMRDKIR 150
++ G+ L K T+D + K T+ + T + P D ++R+K R
Sbjct: 88 DQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCD----AVRNKCR 143
Query: 151 KDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMF 210
+ L AL D + + V + +++ +E +F + + K + RS +
Sbjct: 144 EMLTLALQ------TDHDHVAVGVSC---EHLSSQIEECIFLDVGNTDMKYKNRVRSRIS 194
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 195 NLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT 254
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 255 QTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 297
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 96/283 (33%), Positives = 144/283 (50%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A PVT LL ST+VG S+ L+K E+V A L+ WK+ + +G+
Sbjct: 29 DLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLGMGQAAWA 88
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
R S L + S V+ + +T I D++R K R+
Sbjct: 89 EWRRNSCLLPLTSMEIMGSRDPGVRKRPELPR-MPSTPRITTFPPVPVTCDAVRTKCREM 147
Query: 153 LEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHR--SIMF 210
L AL D + + + A D + +A +E + + G K K+R S +
Sbjct: 148 LTAALQ------TDHDHVA--IGA-DCECLAGQIEEYILWQGVGFGTDMKYKNRVRSRLS 198
Query: 211 NMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKG 270
N+ D KNP LRR+VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 199 NLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT 258
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C C K NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 259 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 301
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 92/269 (34%), Positives = 146/269 (54%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L++ P+T DLL ST++G S+ L+K E+V A L+ WK+ + L
Sbjct: 54 DLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDLDASEEK 113
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATA-SIRKPSHADQAKDSMRDKIRK 151
++ LS+ K+T +S S K T I A D++R+K R+
Sbjct: 114 SEEKKKNLSLPTSSSKETGNSRDQSSNKRQEPPKTPTTPKITTFPPAPVTCDAVRNKCRE 173
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL ADD+ I + A D + +AA +E +++ ++ + K + RS + N
Sbjct: 174 MLTTALQ------ADDDYIA--IGA-DCEHIAAQIEECIYQDIKNTDMKYKNRVRSRISN 224
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNP+L++ VL G +TPE++A MT EE+AS+E ++ + + + + + ++ K GT
Sbjct: 225 LKDSKNPELKKNVLCGAITPEQIAVMTSEEMASNELKEIRKAMTKEAIREHQMA-KTGGT 283
Query: 272 -TDQFKCSGCGKSNCSYHQMQTRSADEPM 299
TD F C C K NC+Y Q+QTRS+DEPM
Sbjct: 284 QTDLFTCGKCKKKNCTYTQVQTRSSDEPM 312
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 86/271 (31%), Positives = 138/271 (50%)
Query: 45 TYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDE 104
T +LL T++G + L+ HP EKV A E++ WK + G+ S
Sbjct: 39 TEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSS------ 92
Query: 105 KFQKQTSDSNAVKSGCSTAKE-KKATASIRKPSHADQAKDSMRD-KIRKDLEKALSRVAS 162
+ S G K+ +K ++S ++ +D ++ D KIR + +
Sbjct: 93 ------TPSKHADVGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMYNAL- 145
Query: 163 EAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRR 222
D +E + + A+ K++ A +V+ G + + RS+ N+ D+ NP LR
Sbjct: 146 -VIDSDESSSLIIAK-AKEIDA---QVLARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRA 200
Query: 223 RVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGK 282
VL E+TP+RL+TMT ELAS++RR+E+ +++ + +F + + +K TD F C C +
Sbjct: 201 SVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQ 260
Query: 283 SNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
SY+QMQTRSADEPMTT+ C C RWK
Sbjct: 261 KKVSYYQMQTRSADEPMTTFCECTVCGNRWK 291
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 88/293 (30%), Positives = 145/293 (49%)
Query: 23 NRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEK-VQNAASELLHIWK 81
N V++C L L P++ +++ T +G + ++K + V A ++ WK
Sbjct: 19 NNGMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWK 78
Query: 82 QKIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQA 141
+V GK + + G+ + +K +K++ + + A K+ S R A A
Sbjct: 79 N-VVDGKSKSQDD-GGAPPA--KKHRKESVEEAKPEKKKIEAPYKRPEPSSRPEIVAQFA 134
Query: 142 KDSMRDKIRKDLEKALSRVASEAADDEEITDRVKAR-DPKQVAASVERVMFEKLRPMGVA 200
S K ++ E L + A D + DP+++A +E ++ R +
Sbjct: 135 SASFPPKHLENDETRL-KSAQLLLSALRFGDMPQGTLDPEELAVQIEEKLYSVHRDTNKS 193
Query: 201 EKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMF 260
RS +FN+ D+KN LR VL G V E+ ATMT EE+AS E R+ ++ + +
Sbjct: 194 YSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAIL 253
Query: 261 KCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+ ++ ++ +D FKC CGK NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 254 EHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWK 306
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 92/295 (31%), Positives = 134/295 (45%)
Query: 24 RSEPEVQRCADALKHLQ-AFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQ 82
++EP LK LQ + DLL ST+VG + K+H +V +SE++ W+
Sbjct: 21 QNEPPAN-IVSLLKELQQGVKASEDLLRSTRVGIIVNKFKQHKAPEVARLSSEIVSKWRN 79
Query: 83 KIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAK 142
E N K +GS + N S S K + P
Sbjct: 80 ------EVNKQKASGSASASQRSSASPRPPQNGTASPASATPSDKMSKLAVPPDKRTWKA 133
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQV---AASVERVMFEKLRPMGV 199
D + I + +A D + A PK V AA+VE ++ P
Sbjct: 134 DGI--DINQTGNRARDNCIGLMYDGLCLHS---AEPPKAVLSKAAAVEAAAYDAYGPETK 188
Query: 200 AEKR-KHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKF 258
R K RS+ N+ ++ NP LR RVL EVTPER MT EEL SDE+R+++ +I+ +
Sbjct: 189 EPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEELRSDEQREKDRKIQKEN 248
Query: 259 MFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
M K V + ++ + +C CG+ +Y + QTRSADEPMT + TC C K W+
Sbjct: 249 MDKAMVAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMHCGKSWR 303
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 75/274 (27%), Positives = 134/274 (48%)
Query: 48 LLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQ 107
LL T+VG ++ + H ++ +++ W+ + K N KL++
Sbjct: 39 LLRETKVGVAVNKFRSHDSAEINGLVKKMIRNWRDAV------QAEKNNKKKLAIAAGTG 92
Query: 108 KQTSDSNAVK-----SGCSTAKEKKATA-SIRKPSHADQAKDSMRDKI-RKDLEKA-LSR 159
T S+A+ SG +T K ++T S + + D + ++ D A +S
Sbjct: 93 TGTPSSSAISPSSSGSGSTTPKPSESTTPSAARKGPRNPKTDGVNTQLYENDTRNASVSA 152
Query: 160 VASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPD 219
+ + A D + + + R ++ A V + + K+ + + + RS N+ ++KNP+
Sbjct: 153 LYTSLAVDRDDSPKHILRIAIEIEAEVYKSEYSKVSD---SYRNRLRSFTMNLRNKKNPE 209
Query: 220 LRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSG 279
LR R+L ++ P MTP E+A + ++E E++ + +F + +K+ TD+F C
Sbjct: 210 LRERILSKQILPAAFIKMTPNEMAPEALKKEIEKLHKQNLFDAQGATEKRAVTDRFTCGK 269
Query: 280 CGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
C SY+QMQTRSADEP+TT+ TC C RWK
Sbjct: 270 CKHKKVSYYQMQTRSADEPLTTFCTCENCGNRWK 303
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 256 (95.2 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
Identities = 71/234 (30%), Positives = 116/234 (49%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM-R 146
K+ N+ K S E D N +K + K K + + ++ + + M R
Sbjct: 175 KKARLNENGLHKCSSSES--SNVPDYNIIKDNFNKIK-KNDIKIVNEWNYDGKFHNDMHR 231
Query: 147 DKIRKDLEKALSRVASEAADDEEITDRVKARDP-KQVAASVERVMFEKLRPMGVAEKRKH 205
DK ++ L KA V + + ++ K D + + +V EK R +
Sbjct: 232 DKAKQFLFKAF--VVGSSDNLLYFIEKKKLNDIIYNIECELYKVYMEK-RSSQKEYNMQL 288
Query: 206 RSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCE-- 263
+SI FN+SD+KNP+ +V ++ + LATM +++ASDE++ E ++ + + C+
Sbjct: 289 KSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESLLACQSD 348
Query: 264 --VPE--KKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
V KK +F+C C + YHQ+QTRS+DEPMTT+VTC +CN RWK
Sbjct: 349 WDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRWK 402
Score = 65 (27.9 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
Identities = 22/92 (23%), Positives = 38/92 (41%)
Query: 23 NRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQ 82
N E ++ L L+ + D+L T++G ++ L K E VQN + +L+ WK
Sbjct: 34 NIDEDIIKEVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKN 93
Query: 83 KIVLGKETNGNKRNGSKLSVDEKFQKQTSDSN 114
+ K ++ K EK + N
Sbjct: 94 IAKMEKLSSLKNYEMMKKRKSEKIEMANDKIN 125
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 256 (95.2 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
Identities = 71/234 (30%), Positives = 116/234 (49%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM-R 146
K+ N+ K S E D N +K + K K + + ++ + + M R
Sbjct: 175 KKARLNENGLHKCSSSES--SNVPDYNIIKDNFNKIK-KNDIKIVNEWNYDGKFHNDMHR 231
Query: 147 DKIRKDLEKALSRVASEAADDEEITDRVKARDP-KQVAASVERVMFEKLRPMGVAEKRKH 205
DK ++ L KA V + + ++ K D + + +V EK R +
Sbjct: 232 DKAKQFLFKAF--VVGSSDNLLYFIEKKKLNDIIYNIECELYKVYMEK-RSSQKEYNMQL 288
Query: 206 RSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCE-- 263
+SI FN+SD+KNP+ +V ++ + LATM +++ASDE++ E ++ + + C+
Sbjct: 289 KSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESLLACQSD 348
Query: 264 --VPE--KKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
V KK +F+C C + YHQ+QTRS+DEPMTT+VTC +CN RWK
Sbjct: 349 WDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRWK 402
Score = 65 (27.9 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
Identities = 22/92 (23%), Positives = 38/92 (41%)
Query: 23 NRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQ 82
N E ++ L L+ + D+L T++G ++ L K E VQN + +L+ WK
Sbjct: 34 NIDEDIIKEVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKN 93
Query: 83 KIVLGKETNGNKRNGSKLSVDEKFQKQTSDSN 114
+ K ++ K EK + N
Sbjct: 94 IAKMEKLSSLKNYEMMKKRKSEKIEMANDKIN 125
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 86/250 (34%), Positives = 128/250 (51%)
Query: 80 WKQKIVLGKETNGNKRNGSKL---SVDEKFQKQTSDSN-AVK---SGCSTAKEKKATASI 132
WK + G KR K SVD K +S +V+ S S A+ K +S
Sbjct: 108 WKPEA--GLSPPRKKREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSP 165
Query: 133 RKPSHADQ---------AKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVA 183
P+ A DS+RDK + L AL ADD+ V ++A
Sbjct: 166 LTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK------ADDDYKDYGVNC---DKMA 216
Query: 184 ASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELA 243
+ +E ++++L+ + + + RS + N+ D +NP LRR VL G ++ +A MT EE+A
Sbjct: 217 SEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMA 276
Query: 244 SDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYV 303
SDE R+ + + + + ++ + TTD F+CS C K NC+Y+Q+QTRSADEPMTT+V
Sbjct: 277 SDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFV 336
Query: 304 TCAECNKRWK 313
C EC RWK
Sbjct: 337 LCNECGNRWK 346
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 67/171 (39%), Positives = 102/171 (59%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL ADD+ V ++A+ +E ++++L+ + +
Sbjct: 186 DSVRDKCVEMLSAALK------ADDDYKDYGVNC---DKMASEIEDHIYQELKSTDMKYR 236
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++ +A MT EE+ASDE R+ + + + +
Sbjct: 237 NRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREH 296
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD F+CS C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 297 QMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 347
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 85/249 (34%), Positives = 127/249 (51%)
Query: 80 WKQKIVLG--KETNGNKRNGSKLSVDEKFQKQTSDSNAV----KSGCSTAKEKKATASIR 133
WK + L ++ + + SVD K +S SG S A+ K S
Sbjct: 107 WKPETGLSPPRKKRAEEPKERRDSVDSKSSATSSPKRPSMERSNSGKSKAETPKTPTSPS 166
Query: 134 KPSHADQA---------KDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAA 184
P+ A DS+RDK + L AL +A DD + D D ++A+
Sbjct: 167 TPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDDYK--DYGVNCD--KMAS 217
Query: 185 SVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELAS 244
+E + E+L+ + + + RS + N+ D +NP LRR VL G ++ +A MT EE+AS
Sbjct: 218 EIEDHILEELKSTDMKYRNRVRSRISNLKDPRNPSLRRNVLSGAISAGLIAKMTAEEMAS 277
Query: 245 DERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVT 304
DE R+ + + + + ++ + TTD F+CS C K NC+Y+Q+QTRSADEPMTT+V
Sbjct: 278 DELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVL 337
Query: 305 CAECNKRWK 313
C EC RWK
Sbjct: 338 CNECGNRWK 346
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 85/304 (27%), Positives = 144/304 (47%)
Query: 28 EVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIV-L 86
E + + LK+ + F +T DLL ST +GKS+ L+ H + + + EL+ WKQ I
Sbjct: 19 EFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQSKELIDKWKQDIEGT 78
Query: 87 GKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMR 146
T + + S + K S S ++K + E + KP + K S
Sbjct: 79 SATTTSSSSSSSSSTTSTTTTKTASPSESLKR--KSISEDTSDRPTSKPLLQENKKISPP 136
Query: 147 DKIRKDLEKALSRVASEAADDEEITDR-----VKA----RD-----PKQVAASVERVMFE 192
+ S +A + ++ ++ V+A D P+ +A +E M++
Sbjct: 137 TTPKTSSPPIASLIAPITGANADLRNKTIQLFVEALTTDNDETMSPPEDIAVEIEAEMYD 196
Query: 193 KLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENE 252
R + K K RS FN+ +KN LR +L +++ + +M +ASD+ ++E +
Sbjct: 197 IYRGVSKEYKEKLRSFKFNL--KKNDILRLSLLNRQISVAKFCSMDIYSMASDDLKEERK 254
Query: 253 EIKAKFMFKCEV-PEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAE--CN 309
++ KF + + + + TTDQF+C C + C+Y Q+QTRSADEP TT+V C C
Sbjct: 255 KLD-KFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCG 313
Query: 310 KRWK 313
RW+
Sbjct: 314 NRWR 317
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 59/137 (43%), Positives = 85/137 (62%)
Query: 178 DPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATM 237
DP +AA +E ++ L V K + RS + N+ D KNP+LR++ L+G++TPE L+ M
Sbjct: 28 DPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKM 87
Query: 238 TPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCSYHQMQTRSAD 296
TPEE+ASD+ +Q ++ + ++ K +GT TDQFKC C K NCS Q+ R D
Sbjct: 88 TPEEMASDDMKQMRQKYVQDSINAAQMA-KVQGTKTDQFKCERCDKRNCS--QLHIRDGD 144
Query: 297 EPMTTYVTCAECNKRWK 313
EP+ T+V C EC RWK
Sbjct: 145 EPIITFVICDECGNRWK 161
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 79/279 (28%), Positives = 133/279 (47%)
Query: 42 FPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLS 101
F T LL T+VG + KK ++ +++ WK I K + +++ +
Sbjct: 34 FVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHA 93
Query: 102 VDEKFQKQT-SDS-NAVKSGCSTA----KEKKATASIRKPSHADQAKDSM-RDKIRKDLE 154
K T +S N V+ S+ K+ K ++ + S D ++ K+R +
Sbjct: 94 PGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVL 153
Query: 155 KALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSD 214
KAL V A + E + K + + + +V A K ++R I N+
Sbjct: 154 KALYDVL--AKESEHPPQSI-LHTAKAIESEMNKV--NNCDTNEAAYKARYRIIYSNVIS 208
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+ NPDL+ ++ G++TPE LAT ++LA +Q+ EEI + ++ + ++ TD+
Sbjct: 209 KNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDR 268
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
F C C + SY+Q+QTRSADEP+TT+ TC C RWK
Sbjct: 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 65/171 (38%), Positives = 101/171 (59%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL ADD+ V ++A+ +E ++++L+ + +
Sbjct: 186 DSVRDKCVEMLSAALK------ADDDYKDYGVNC---DKMASEIEDHIYQELKSTDMKYR 236
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++ +A MT EE+ASDE R+ + + + +
Sbjct: 237 NRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREH 296
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD F+CS C K NC+Y+Q+QTR+ DEPMTT+V C EC RWK
Sbjct: 297 QMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRT-DEPMTTFVLCNECGNRWK 346
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 288 (106.4 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 67/142 (47%), Positives = 87/142 (61%)
Query: 124 KEKKATASIRKPSHADQAK--DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQ 181
K ++ P+H+ K DS RDK+R+ L+ +L +VASE D E T RV A DP
Sbjct: 583 KSHDRETQVKIPTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKT-RVTACDPSV 641
Query: 182 VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEE 241
VA SVE MFEKL K K+RSI+FNM D NPDLRR+VLIGE+ ERL TM +E
Sbjct: 642 VAVSVESAMFEKLGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQE 701
Query: 242 LASDERRQENEEIKAKFMFKCE 263
+ S++ ++E + IK FK E
Sbjct: 702 MGSEKIQKEVQRIKENARFKEE 723
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 78/258 (30%), Positives = 128/258 (49%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A P+T LL ST+VG S+ L+K E+V A L+ WK K++ +
Sbjct: 2 DLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK-KLLDASDAKA 60
Query: 93 NKRN-GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRK 151
+R G L + + D + + A +T I D++R+K R+
Sbjct: 61 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAP---STPRITTFPPVPVTCDAVRNKCRE 117
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL D + + + A D ++++A +E +F + + K + RS + N
Sbjct: 118 MLTAALQ------TDHDHVA--IGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSRISN 168
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNPDLRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 169 LKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQ 228
Query: 272 TDQFKCSGCGKSNCSYHQ 289
TD F C C K NC+Y Q
Sbjct: 229 TDLFTCGKCRKKNCTYTQ 246
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 62/129 (48%), Positives = 84/129 (65%)
Query: 118 SGCSTAKEKKATASIRKPSHADQAK--DSMRDKIRKDLEKALSRVASEAADDEEITDRVK 175
SG +++ + A+++ P+HA K DS RDK+R+ L+ +L++VASE D E T RV
Sbjct: 89 SGREKSRDNRE-AAVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKT-RVT 146
Query: 176 ARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235
A DP VA SVE MFE L +K K+RSI+FNM D NPDLRR+VL+GE++ ERL
Sbjct: 147 ACDPWVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLV 206
Query: 236 TMTPEELAS 244
M EE+ S
Sbjct: 207 KMEKEEMGS 215
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 67/208 (32%), Positives = 107/208 (51%)
Query: 109 QTSDSNAVKSGCSTAKEKKATASIRKPS--HADQAKDSMRDKIRKDLEKALSRVASEAAD 166
+ + + S ST+K++ +T S A DS+R K R+ L AL
Sbjct: 90 EAREESCSSSNISTSKDETSTRDTYASSVPRAPSTSDSVRLKCRETLAAALR------TG 143
Query: 167 DEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLI 226
D+ + + A D +++ + +E +++++R K R+ + N+ D KNP+ VL
Sbjct: 144 DDYVA--IGA-DEEELGSQIEEAIYKEIRNTDKKYKSPERTRISNIKDAKNPN---NVLC 197
Query: 227 GEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNC 285
G+++P+ A M EE+ASDE +++ E+ + + K GT TD F C C K NC
Sbjct: 198 GKISPDLFARMRAEEMASDELKKDKEKPDQR-SHQGVSETKTSGTQTDWF-CGKC-KKNC 254
Query: 286 SYHQMQTRSADEPMTTYVTCAECNKRWK 313
+Y Q+QTRSADE MTT+ C RWK
Sbjct: 255 TYTQVQTRSADEQMTTFA----CANRWK 278
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 55/148 (37%), Positives = 82/148 (55%)
Query: 118 SGCSTAKEKKATASIRKPSHADQAK--DSMRDKIRKDLEKALSRVASEAADDEEITDRVK 175
SG +++++ I P+H+ K DS RDK+ + L+ +L++VA+E D E +
Sbjct: 89 SGREKSRDRETPVKI--PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMT 146
Query: 176 ARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235
DP VA SVE M SI+FNM D NPDLRR+VLIGE++ ERL
Sbjct: 147 VCDPWVVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLV 190
Query: 236 TMTPEELASDERRQENEEIKAKFMFKCE 263
M +E+ S++ ++E + IK + FK E
Sbjct: 191 KMEKDEMGSEKIQKEVQRIKERARFKEE 218
>UNIPROTKB|B7Z4S1 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] InterPro:IPR001222 InterPro:IPR017923 Pfam:PF01096
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003746
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AC100821 UniGene:Hs.491745
HGNC:HGNC:11612 EMBL:AK297729 IPI:IPI00922871 SMR:B7Z4S1
STRING:B7Z4S1 Ensembl:ENST00000522635 UCSC:uc011ldw.2
Uniprot:B7Z4S1
Length = 117
Score = 186 (70.5 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 240 EELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCSYHQMQTRSADEP 298
+E+ASDE ++ + + + + + ++ K GT TD F C C K NC+Y Q+QTRSADEP
Sbjct: 42 QEMASDELKEMRKNLTKEAIREHQMA-KTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEP 100
Query: 299 MTTYVTCAECNKRWK 313
MTT+V C EC RWK
Sbjct: 101 MTTFVVCNECGNRWK 115
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 163 (62.4 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 61/231 (26%), Positives = 106/231 (45%)
Query: 98 SKLSVDEKFQKQTSDSNA--VKSGCSTAKEKKATASIRKP--SHADQAKDSMRDKIRKDL 153
SK+ V + K+ + +NA + S +E KP + A +D MR +R
Sbjct: 127 SKILVPPRTVKKVASNNADGSRDQLSPFEEGHTDNEGSKPLVNEAGSQQDHMR-ALRCKC 185
Query: 154 EKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMS 213
L + + +A D+E TD+ +++ +E +F K RS + N+
Sbjct: 186 TDLLYKALTGSAKDKEETDKWL-----ELSKEIEEHVFALHCKNDKKYKNCIRSKISNLK 240
Query: 214 DEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-T 272
+ K+ +L+ + G ++P+ A MT E+ASDE +Q + + ++P+ GT T
Sbjct: 241 NPKSCNLKHNLFSGTLSPKAFAEMTVMEMASDELKQLRALYTESSIQEHQLPQVINGTQT 300
Query: 273 DQFKCSGCGKSNCSYHQMQ---------TRSA--DEPMTTYVTCAECNKRW 312
++ KC C KS+C+ + RS DE M T+V C EC ++W
Sbjct: 301 NKIKCRRCEKSDCTVTMIARGTLFLPGWVRSTNPDEQMLTFVICNECGEQW 351
Score = 77 (32.2 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSL-RHLKKHPCEKVQNAASELLHIWK 81
SE Q D LK L+ +T + L T+V K + R LK P +++ A +LL WK
Sbjct: 19 SENNFQDIEDHLKELEDVSMTVEYLQGTEVAKVVYRILKSCPSAELKKKAKQLLSRWK 76
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 175 (66.7 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 35/101 (34%), Positives = 62/101 (61%)
Query: 190 MFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQ 249
++++L+ + + + RS + N+ D +NP LRR VL G ++ +A MT EE+ASDE R+
Sbjct: 11 IYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRE 70
Query: 250 ENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQM 290
+ + + + ++ + TTD F+CS C K NC+Y+Q+
Sbjct: 71 LRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQV 111
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 200 (75.5 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 64/205 (31%), Positives = 101/205 (49%)
Query: 55 GKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGK---ETNGNKRNGSKLSVDEKFQKQ-T 110
GK+L + +K Q+ + + Q V+ + E G K + LSV EK K
Sbjct: 830 GKNLSESRDSDTKKGQHVPARKV---SQTAVIPRRSSEEKGEKISKESLSVVEKSTKSGV 886
Query: 111 SDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEI 170
+ +K EK T++ P+ +K S D+IR ++++L + + D +
Sbjct: 887 HEKQEIKK---KKNEKGPTSATHLPN-VPASKPSA-DQIRHSVKQSLKEILMKRLTDSSL 941
Query: 171 TDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVT 230
++ +VA +ER +F R K K+RS+MFN+ D KN L ++VL GEVT
Sbjct: 942 --KIPEERAAKVATRIERELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVT 999
Query: 231 PERLATMTPEELASDE----RRQEN 251
P+ L M+PEELAS E R++EN
Sbjct: 1000 PDHLIKMSPEELASKELAAWRQREN 1024
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 195 (73.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 60/168 (35%), Positives = 82/168 (48%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRD 147
KE+ G K S +KQ V+ G AS KPS ADQ + S+R
Sbjct: 147 KESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHP---AASASKPS-ADQIRQSVRH 202
Query: 148 KIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRS 207
++ L K L+ D + +V +VA +E+ +F R K K+RS
Sbjct: 203 SLKDILMKRLT--------DSNL--KVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRS 252
Query: 208 IMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
+MFN+ D KN L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 253 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 300
>UNIPROTKB|G3N3C0 [details] [associations]
symbol:G3N3C0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
EMBL:DAAA02075450 Ensembl:ENSBTAT00000044068 OMA:HEDASTS
NextBio:20873392 Uniprot:G3N3C0
Length = 377
Score = 173 (66.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 57/209 (27%), Positives = 91/209 (43%)
Query: 117 KSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKA 176
+ C + + K S R P D A + +D+I + + + EA + +A
Sbjct: 164 EDSCGSVEPKAVPLSARDPQSTDLAANGQQDRI-VPVRARCTELLYEALTASS-PGQPRA 221
Query: 177 RDPKQVAASVERVMFEKLRPMGVAE-KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235
+A +E +F L P + + K RS + N+ N L++ +L G ++P A
Sbjct: 222 HVWPNLAQEIEAHVFA-LHPKNLQKYKTCIRSKVANLKKPHNSHLQQNLLSGTMSPREFA 280
Query: 236 TMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCS-------- 286
MT E+AS E +Q + K +P+ +GT T + KC C K NC
Sbjct: 281 EMTAMEMASQELKQLRASYMKSALRKHYLPQVVEGTPTRKIKCERCEKFNCQVTVIPRGT 340
Query: 287 -YHQMQTRSA--DEPMTTYVTCAECNKRW 312
+ R+A DE M TYV C EC ++W
Sbjct: 341 LFLPSWVRNAGPDEEMMTYVICNECGEQW 369
Score = 53 (23.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 30 QRCADALKH----LQAFPVTYDLLVSTQVGKSL-RHLKKHPCEKVQNAASELLHIWKQKI 84
QR + L H L+ VT + L T V +++ R LK P ++ A LL WK
Sbjct: 45 QRSFEELGHHLTVLETLHVTPEHLQETGVVRAVYRVLKNCPTGALKQKAKRLLSEWK--- 101
Query: 85 VLGKET 90
VL K+T
Sbjct: 102 VLYKDT 107
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 195 (73.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 60/168 (35%), Positives = 82/168 (48%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRD 147
KE+ G K S +KQ V+ G AS KPS ADQ + S+R
Sbjct: 692 KESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHP---AASASKPS-ADQIRQSVRH 747
Query: 148 KIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRS 207
++ L K L+ D + +V +VA +E+ +F R K K+RS
Sbjct: 748 SLKDILMKRLT--------DSNL--KVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRS 797
Query: 208 IMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
+MFN+ D KN L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 798 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 845
Score = 37 (18.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 26 EPEVQRCADALKHL--QAFPVTYDLLVS---TQVGKSLRH 60
EP++Q C +K + QA V L Q+ K L H
Sbjct: 369 EPKIQSCNSGVKSVKNQAHSVLKKTLQDQTLVQIFKPLTH 408
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 192 (72.6 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 57/159 (35%), Positives = 82/159 (51%)
Query: 97 GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKA 156
G K + +KQ + V+ G A A+I KPS ADQ + S+R ++ L K
Sbjct: 869 GEKAARSGTHEKQETKKKKVEKGGPNV-HPPAAAAI-KPS-ADQIRQSVRHSLKDILMKR 925
Query: 157 LSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEK 216
L+ D + ++ +VA +E+ +F R K K+RS+MFN+ D K
Sbjct: 926 LT--------DSNL--KIPEEKSAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPK 975
Query: 217 NPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
N L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 976 NNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 1014
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 190 (71.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 58/167 (34%), Positives = 82/167 (49%)
Query: 101 SVDEKFQKQTSDSNAV--------KSGCSTAKE--KKATASIRKPSH--ADQAKDSMRDK 148
S +EK +K T +S V K G +E KK T H A A D+
Sbjct: 859 SSEEKSEKMTKESTTVICTGEKASKPGAHEKQEIKKKKTEKGLPGVHPPAVPASKPSADQ 918
Query: 149 IRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSI 208
IR+ + +L + + D + +V +VA +E+ +F R K K+RS+
Sbjct: 919 IRQSVRHSLKDILMKRLTDSNL--KVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSL 976
Query: 209 MFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
MFN+ D KN L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 977 MFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 1023
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 195 (73.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 60/168 (35%), Positives = 82/168 (48%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRD 147
KE+ G K S +KQ V+ G AS KPS ADQ + S+R
Sbjct: 878 KESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHP---AASASKPS-ADQIRQSVRH 933
Query: 148 KIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRS 207
++ L K L+ D + +V +VA +E+ +F R K K+RS
Sbjct: 934 SLKDILMKRLT--------DSNL--KVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRS 983
Query: 208 IMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
+MFN+ D KN L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 984 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 1031
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 26 EPEVQRCADALKHL--QAFPVTYDLLVS---TQVGKSLRH 60
EP++Q C +K + QA V L Q+ K L H
Sbjct: 555 EPKIQSCNSGVKSVKNQAHSVLKKTLQDQTLVQIFKPLTH 594
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 186 (70.5 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 62/168 (36%), Positives = 82/168 (48%)
Query: 88 KETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRD 147
KET G K S +KQ + G T S KPS ADQ + S+R
Sbjct: 879 KETTTVICTGEKGSKPGAHEKQEIKKKKSEKGIPNVHVP--TTSTSKPS-ADQIRQSVRH 935
Query: 148 KIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRS 207
++ L + L+ S EE KA +VA +E+ +F R K K+RS
Sbjct: 936 SLKDILMRRLTE--SNLKVPEE-----KAA---KVATKIEKELFSFFRDTDAKYKNKYRS 985
Query: 208 IMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQEN 251
+MFN+ D KN L ++VL GEVTP+ L M+PEELAS E RR+EN
Sbjct: 986 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 1033
>UNIPROTKB|A0JNK7 [details] [associations]
symbol:LOC504389 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
GeneTree:ENSGT00390000017794 CTD:170082 HOGENOM:HOG000234470
OMA:LKKKAKC OrthoDB:EOG4T1HMR EMBL:DAAA02074911 EMBL:BC126748
IPI:IPI00883437 RefSeq:NP_001019643.2 UniGene:Bt.30852
Ensembl:ENSBTAT00000023859 GeneID:504389 KEGG:bta:504389
HOVERGEN:HBG102368 InParanoid:A0JNK7 NextBio:20866636
Uniprot:A0JNK7
Length = 378
Score = 165 (63.1 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 56/209 (26%), Positives = 90/209 (43%)
Query: 117 KSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKA 176
+ CS + K S P D A+ D I + + + EA + +A
Sbjct: 165 EDSCSRVETKAVPLSAWDPQSTDLAESGQLDPI-VPVRARCTELLYEALTASS-PSQPRA 222
Query: 177 RDPKQVAASVERVMFEKLRPMGVAE-KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235
+A +E +F L P + + K RS + N+ + +N L++ +L G ++P A
Sbjct: 223 HVWSNLAQEIEAHVFA-LHPKNLQKYKTCIRSKVANLKNPRNSHLQQNLLSGTMSPREFA 281
Query: 236 TMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCS-------- 286
MT E+AS E +Q + + +P+ +GT T + KC C K NC
Sbjct: 282 KMTAMEMASQELKQLRASYTKSALREHYLPQVVEGTPTRKIKCERCEKFNCQVTVIPRGT 341
Query: 287 -YHQMQTRSA--DEPMTTYVTCAECNKRW 312
+ R+A DE M TYV C EC ++W
Sbjct: 342 LFLPSWVRNAGPDEEMMTYVICNECGEQW 370
Score = 48 (22.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 39 LQAFPVTYDLLVSTQVGKSL-RHLKKHPCEKVQNAASELLHIWKQ--KIVLGKETNGNKR 95
L+ VT + L T V +++ R LK P ++ A LL WK K L K KR
Sbjct: 58 LETLHVTPEHLQETGVVRAVYRVLKNCPTGALKQKAKRLLSEWKALYKDTLCKPEGSPKR 117
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 166 (63.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 157 LSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEK 216
LS V +D E + DP+ +A+ +E +F+ + K K RS++FN+ D+
Sbjct: 338 LSWVLEPVSDFGENETQKSFEDPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKN 397
Query: 217 NPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFM 259
NP+LR V+ G+++PERL MT EELAS E Q + KA+ M
Sbjct: 398 NPELRESVMSGKISPERLCNMTAEELASKELSQWRQA-KAEEM 439
Score = 50 (22.7 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 117 KSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEE 169
KSG +K+A S + +S+R K+++ L AL+ V +E
Sbjct: 182 KSGKQVMNKKQAGLSQGSVKTLNDGNESLRSKMKESLAAALALVHEHEESPKE 234
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 156 (60.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 177 RDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLAT 236
+DPK +A+ +E +++ + + + RS++FN+ D+ NP+LR RV+ E++ ERL +
Sbjct: 259 QDPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCS 318
Query: 237 MTPEELASDERRQENEEIKAKFMFKCEV 264
MT EELAS E Q + KA+ M K V
Sbjct: 319 MTAEELASKELSQWRQA-KAEEMAKMVV 345
Score = 56 (24.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 25/101 (24%), Positives = 49/101 (48%)
Query: 67 EKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEK 126
+++ A++ +LHI KI L +ET + +G K + Q +++ K + K++
Sbjct: 42 QQLSPASNGILHI-PTKI-LSQETLHSLMHGKKAT-----QTESAPQKPAKPVVN--KKQ 92
Query: 127 KATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADD 167
R ++ +S+R K+R+ L AL+ V + DD
Sbjct: 93 HVPPPQRSVKAMEEVNESVRSKMRESLASALALVKKD--DD 131
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 166 (63.5 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 98 SKLSVDEKFQKQTSDSNAVKSGCSTAKE--KKATASIRKPSH---ADQAKDSMRDKIRKD 152
+KLS + Q S + S AK+ +K T +++ P+ A + +R IR+
Sbjct: 1222 AKLSHPQNTTVQASHQLGISSVRPLAKKDKEKTTPTVQAPTPNRIAAGKPEPVRIGIRRS 1281
Query: 153 L-EKALSRVA-SEAADD---EEITDRVKARDPKQVAASVERVMFEKL-RPMGVAEKRKHR 206
L E+ L+R+ ++AA++ + T + Q +VE MF R +G K K+R
Sbjct: 1282 LREQLLARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYR 1341
Query: 207 SIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEE 253
S+MFN+ D KN L ++ +V P +L MTPE+LAS E + EE
Sbjct: 1342 SLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREE 1388
Score = 149 (57.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 50/148 (33%), Positives = 74/148 (50%)
Query: 124 KEKKA-TASIRKPSHADQAK-DSMRDKIRKDL-EKALSRVA-SEAADD---EEITDRVKA 176
KEK T P+ K + +R IR+ L E+ L+R+ ++AA++ + T
Sbjct: 1251 KEKTTPTVQAPTPNRIAAGKPEPVRIGIRRSLREQLLARIKEAQAAEENSGQPTTQWPTV 1310
Query: 177 RDPKQVAASVERVMFEKL-RPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235
+ Q +VE MF R +G K K+RS+MFN+ D KN L ++ +V P +L
Sbjct: 1311 LEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLV 1370
Query: 236 TMTPEELASDE----RRQENEE----IK 255
MTPE+LAS E R +EN IK
Sbjct: 1371 RMTPEQLASQELAKWREEENRHQLDMIK 1398
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 161 (61.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 50/134 (37%), Positives = 72/134 (53%)
Query: 122 TAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQ 181
T K K + S +KPS +R +R LE+ L + + E+ D + +DR P +
Sbjct: 737 TKKVKISPVSSKKPSTGH-----IRRSVRDSLEEILLKRSKES-DLKISSDR-----PAE 785
Query: 182 VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEE 241
VA E+ +F + + K K+RS+ FN+ D KN L +RVL GEV+P L MT EE
Sbjct: 786 VARRTEKELFALFQGVDSKYKNKYRSLTFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEE 845
Query: 242 LASDE----RRQEN 251
LAS E R++EN
Sbjct: 846 LASKELAAWRKREN 859
>UNIPROTKB|E2QWP2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 OMA:LKKKAKC EMBL:AAEX03026149
Ensembl:ENSCAFT00000018657 Uniprot:E2QWP2
Length = 351
Score = 152 (58.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 59/236 (25%), Positives = 102/236 (43%)
Query: 90 TNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKI 149
+ G+ N S SV E F+ +++ ++ KE+ + P Q + D +
Sbjct: 116 SGGSSSNSSSHSVAEAFEMIVPENSTSQT---EPKEEHFRSG--DPKSTAQRSSELLDPM 170
Query: 150 RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE-KRKHRSI 208
K + + EA T++ KA + A +E +F L + + K RS
Sbjct: 171 VPVRAKC-TELLYEALTSP-FTEQPKADLWRNFAREIEEHIFT-LHSKNLKKYKTCVRSK 227
Query: 209 MFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKK 268
+ N+ + KN L++ +L G ++P A MT E+A+ E +Q + + +P+
Sbjct: 228 VANLRNPKNSHLQQNLLSGTMSPREFAKMTVMEMANKELKQLRASYTESCIQEHHLPQAI 287
Query: 269 KGT-TDQFKCSGCGKSNCSY-----------HQMQTRSADEPMTTYVTCAECNKRW 312
+GT T + KC C K NC ++ + DE M TYV C EC ++W
Sbjct: 288 EGTHTRKIKCRRCEKFNCKVTVIARGTLFLPSWVRNSNPDEEMMTYVICNECGEQW 343
>UNIPROTKB|F1SRI2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
OMA:LKKKAKC EMBL:CU207339 RefSeq:XP_001927499.1
RefSeq:XP_001927509.1 RefSeq:XP_001927522.1 RefSeq:XP_003134980.1
RefSeq:XP_003134981.1 RefSeq:XP_003134982.1 UniGene:Ssc.1528
ProteinModelPortal:F1SRI2 Ensembl:ENSSSCT00000013261
GeneID:100156439 KEGG:ssc:100156439 Uniprot:F1SRI2
Length = 352
Score = 149 (57.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 51/191 (26%), Positives = 84/191 (43%)
Query: 135 PSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKL 194
P DQ+ +RD R K + A T++ +A + A +E +F L
Sbjct: 157 PKSTDQSSGELRDPTRPVRAKCTELLYEALAAFS--TEQPRADLWHRFAQEIEECIFT-L 213
Query: 195 RPMGVAE-KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEE 253
+ + K RS + N+ + +N LR +L G ++P A MT ++AS E +Q
Sbjct: 214 HAKNLKKYKTCIRSKIANLKNPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRAS 273
Query: 254 IKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCS---------YHQMQTRSA--DEPMTT 301
+ + +P+ +GT T + +C C K NC + R+A DE + T
Sbjct: 274 YTESCIQEHSLPQGVEGTPTKKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMT 333
Query: 302 YVTCAECNKRW 312
YV C EC ++W
Sbjct: 334 YVICKECGEQW 344
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 150 (57.9 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 178 DPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATM 237
DP+ +A +E +F+ + K K RS++FN+ D+ NP LR +V+ GE+ ERL +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 238 TPEELASDERRQENEEIKAKFM 259
+ EELAS E E + KA+ M
Sbjct: 375 SAEELASKELA-EWRQAKAEEM 395
Score = 45 (20.9 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 106 FQKQTSDSNAVKSGCSTAKEKKATAS--IRKPSHADQAKDSMRDKIRKDLEKALSRVASE 163
F + S + K G A K + KP ++ S+R K+R+ L AL+ V +
Sbjct: 118 FVSKNSFVSFSKPGKQAAARKPTLQKPMLLKPQ--SESSGSVRSKMRESLAGALAMVQCQ 175
Query: 164 AADDEEITDRVKARDPKQVAASVE 187
++ + K D + VA +E
Sbjct: 176 M----DVPNESKMLDSETVANPLE 195
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 158 (60.7 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 48/150 (32%), Positives = 75/150 (50%)
Query: 101 SVDEKFQKQTSDSNAVKSGCSTAKEKKATASIR----KPSHADQAKDSMRDKIRKDLEKA 156
S KF T+ AV+ ST+ + A R P+ + Q +R IR+ L++
Sbjct: 625 SASRKFPSSTASVGAVRKPGSTSVPLASPAPGRLGPVSPA-SSQPNSQIRQNIRRSLKEI 683
Query: 157 LSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEK 216
L + +++ DD +T+ + ++A +E+ MF R K K+RS+MFN+ D K
Sbjct: 684 LWKRVNDS-DDLIMTEN----EVGKIALLIEKEMFNLFRVTDNRYKSKYRSLMFNLKDPK 738
Query: 217 NPDLRRRVLIGEVTPERLATMTPEELASDE 246
N L RVL E++ +L M PEEL S E
Sbjct: 739 NQGLFHRVLREEISLAKLVRMKPEELVSKE 768
>UNIPROTKB|H0YF26 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 Pfam:PF07500 PIRSF:PIRSF006704 PROSITE:PS51321
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0032784 EMBL:AC079383 HGNC:HGNC:28277 Ensembl:ENST00000467590
Uniprot:H0YF26
Length = 272
Score = 143 (55.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 46/162 (28%), Positives = 74/162 (45%)
Query: 164 AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE-KRKHRSIMFNMSDEKNPDLRR 222
AA TD+ KA + A +E +F L + + K RS + N+ + +N L++
Sbjct: 105 AALTSSSTDQPKADLWQNFAREIEEHVFT-LYSKNIKKYKTCIRSKVANLKNPRNSHLQQ 163
Query: 223 RVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCG 281
+L G +P A MT E+A+ E +Q + + +P+ GT T++ KC C
Sbjct: 164 NLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRCE 223
Query: 282 KSNCSY-----------HQMQTRSADEPMTTYVTCAECNKRW 312
K NC ++ + DE M TYV C EC ++W
Sbjct: 224 KYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 265
>UNIPROTKB|Q8N8B7 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 HSSP:P23193 EMBL:AK097032
EMBL:AK315599 EMBL:DC344354 EMBL:AC079383 EMBL:BC020095
IPI:IPI00856085 IPI:IPI00970906 RefSeq:NP_689847.2
UniGene:Hs.222855 UniGene:Hs.737398 ProteinModelPortal:Q8N8B7
SMR:Q8N8B7 IntAct:Q8N8B7 MINT:MINT-1468129 STRING:Q8N8B7
PhosphoSite:Q8N8B7 DMDM:117949797 PRIDE:Q8N8B7
Ensembl:ENST00000314720 Ensembl:ENST00000380600
Ensembl:ENST00000544987 Ensembl:ENST00000545566 GeneID:170082
KEGG:hsa:170082 UCSC:uc004cvk.2 UCSC:uc010neg.1 CTD:170082
GeneCards:GC0XP013671 HGNC:HGNC:28277 HPA:HPA001013
neXtProt:NX_Q8N8B7 eggNOG:NOG280689 HOGENOM:HOG000234470
InParanoid:Q8N8B7 OMA:LKKKAKC OrthoDB:EOG4T1HMR PhylomeDB:Q8N8B7
GenomeRNAi:170082 NextBio:88870 Bgee:Q8N8B7 Genevestigator:Q8N8B7
GermOnline:ENSG00000176896 Uniprot:Q8N8B7
Length = 351
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/162 (28%), Positives = 74/162 (45%)
Query: 164 AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE-KRKHRSIMFNMSDEKNPDLRR 222
AA TD+ KA + A +E +F L + + K RS + N+ + +N L++
Sbjct: 183 AALTSSSTDQPKADLWQNFAREIEEHVFT-LYSKNIKKYKTCIRSKVANLKNPRNSHLQQ 241
Query: 223 RVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCG 281
+L G +P A MT E+A+ E +Q + + +P+ GT T++ KC C
Sbjct: 242 NLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRCE 301
Query: 282 KSNCSY-----------HQMQTRSADEPMTTYVTCAECNKRW 312
K NC ++ + DE M TYV C EC ++W
Sbjct: 302 KYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 343
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 137 (53.3 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 168 EEITDRVKARDPKQ-VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLI 226
+E+ D V + + +AA +E +F+ + K+RS++FN+ D +NPDL +V+
Sbjct: 9 QELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIH 68
Query: 227 GEVTPERLATMTPEELASDE--RRQENEEIKAKFM-FKC---EVPEKKKGTTDQ 274
G+VTP+ L M +LA E R ++ EE + + C P K TT+Q
Sbjct: 69 GDVTPQGLVRMNSVQLAPQELARWRDQEEKRGSMVSVDCGPLAPPATSKDTTEQ 122
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 152 (58.6 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/115 (35%), Positives = 62/115 (53%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
+ MR IR+ L L + S++ DD +++ R +A +E+ MF K
Sbjct: 759 NQMRSNIRRSLTDILYKRVSDS-DDLTMSENEVGR----LAVGIEKEMFNLCMNTDNKYK 813
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE----RRQENEE 253
K+RS+MFN+ D KN L RV+ GE++P RL ++PEEL S E R+ E+ E
Sbjct: 814 NKYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLSKELSDWRKSESSE 868
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 151 (58.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + +VA ++E+ MF
Sbjct: 686 QPNSQIRQNIRRSLKEILWKRVNDS-DDLVMTES----EVGKVALNIEKEMFNLFHVTDN 740
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
K K+RSIMFN+ D KN L RVL GE++ +L M PEEL S E
Sbjct: 741 RYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKE 787
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 151 (58.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + +VA ++E+ MF
Sbjct: 686 QPNSQIRQNIRRSLKEILWKRVNDS-DDLVMTES----EVGKVALNIEKEMFNLFHVTDN 740
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
K K+RSIMFN+ D KN L RVL GE++ +L M PEEL S E
Sbjct: 741 RYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKE 787
>RGD|1584894 [details] [associations]
symbol:Tceanc "transcription elongation factor A (SII)
N-terminal and central domain containing" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 RGD:1584894 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 CTD:170082 OMA:LKKKAKC
OrthoDB:EOG4T1HMR EMBL:CH474014 IPI:IPI00361417
RefSeq:NP_001102485.1 UniGene:Rn.78966 Ensembl:ENSRNOT00000005981
GeneID:367782 KEGG:rno:367782 UCSC:RGD:1584894 NextBio:691604
Uniprot:D4AEK4
Length = 358
Score = 141 (54.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 58/243 (23%), Positives = 101/243 (41%)
Query: 89 ETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDK 148
ET G+ N L + + S +A K+ + E A + + +S K
Sbjct: 113 ETPGSSHN-EILGLCSSLSR-LSPQDAAKAAAAFGSESSAAQMEINEGYLEDDSESP-SK 169
Query: 149 IRKDLEKALSRVASEAAD------DEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE- 201
L+ L V S+ + TD K + +A +E +F L + +
Sbjct: 170 SSGVLDNPLVSVRSKCIELLYKALASSCTDHTKVHFWQNLARQIEEHIFT-LHSNDIKKY 228
Query: 202 KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFK 261
K RS + N+++ +N L++ +L G ++ A MT ++A+ E +Q + +
Sbjct: 229 KNNIRSKVANLNNPRNSHLQQNLLSGTISAREFAEMTVLDMANQELKQLRASYIESSIQE 288
Query: 262 CEVPEKKKGT-TDQFKCSGCGKSNCSY-----------HQMQTRSADEPMTTYVTCAECN 309
+P+ GT T++ KC C K NC+ +Q + DE MT YV C EC
Sbjct: 289 HHLPQIVDGTHTNKIKCRRCDKYNCTVTVIARGTLFLPSWVQNSNPDEQMT-YVICNECG 347
Query: 310 KRW 312
++W
Sbjct: 348 EQW 350
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 143 (55.4 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 40/144 (27%), Positives = 73/144 (50%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQ-VAASVERVMFEKLRPMG 198
Q K S+ +R + A+ V +E+ D V + + + +AA +E +F +
Sbjct: 95 QEKLSLDVGVRNTVVHAMQEVLRSRL--QELPDLVLSEEAVEGIAAGIETALFNLTQTTS 152
Query: 199 VAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKF 258
K K+RS++FN+ D +NPDL +V+ G+VTPE L M+ +LA E ++ + +
Sbjct: 153 CRYKTKYRSLLFNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQLAPQELACWRDQEEKRG 212
Query: 259 MFKCEVPEKKKGTTDQFKCSGCGK 282
+ E +K+ + FK + G+
Sbjct: 213 LEIIEQQQKELCSLPAFKLTHKGE 236
>ASPGD|ASPL0000042794 [details] [associations]
symbol:AN1777 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 OrthoDB:EOG4PRX19 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 EMBL:AACD01000028
RefSeq:XP_659381.1 ProteinModelPortal:Q5BCF3
EnsemblFungi:CADANIAT00008424 GeneID:2875165 KEGG:ani:AN1777.2
eggNOG:NOG45011 HOGENOM:HOG000215957 OMA:ERDMICC Uniprot:Q5BCF3
Length = 889
Score = 144 (55.7 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 112 DSNAVKSGCSTAKEK-KATASIRKPSHADQAKDSMRDKIRKD-LEKAL---SRVASEAAD 166
D+N + +T E+ K I P+ + A S K+ D + AL S SE
Sbjct: 259 DTNQTPAADTTKTERLKTLEDITNPARRNAA--SALTKVFVDQISSALAGGSFKMSEGKT 316
Query: 167 DEEITDRVKARDPKQVAASVERVMFEKLRPMG-----VAEKRKHRSIMFNMSDEKNPDLR 221
EE+ +Q+ SVE +++ L G A K + R+I+FN+ +KNP LR
Sbjct: 317 GEEVG--------QQLGISVEEALYQNLMGGGGEATSEAYKIQLRAILFNV--KKNPSLR 366
Query: 222 RRVLIGEVTPERLATMTPEELASDERRQENEEIK 255
R+L+G +TP+ L+ M+ +E+AS+E +Q++ EIK
Sbjct: 367 DRLLVGSLTPDALSRMSSQEMASEELQQKDAEIK 400
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 144 (55.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + ++A +E+ MF +
Sbjct: 674 QPNSQIRQNIRRSLKEILWKRVNDS-DDLIMTES----EVGKIALHIEKEMFNLFQVTDN 728
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEE-IKAKF 258
K K+RSIMFN+ D KN L RVL E++ +L M PEEL S E E K
Sbjct: 729 RYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSTWRERPTKPVM 788
Query: 259 MFKCEV-PEKKKGTTDQ 274
+ ++ E KK TT Q
Sbjct: 789 ESRNKLHSENKKTTTKQ 805
>SGD|S000003824 [details] [associations]
symbol:RPA12 "RNA polymerase I subunit A12.2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 SGD:S000003824
EMBL:BK006943 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:L47993
GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790 EMBL:L35564
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 InterPro:IPR019761 PROSITE:PS01030 OrthoDB:EOG45QMPS
EMBL:L00708 EMBL:Z49563 EMBL:AY558313 PIR:A48107 RefSeq:NP_012597.1
ProteinModelPortal:P32529 SMR:P32529 DIP:DIP-236N IntAct:P32529
MINT:MINT-472816 STRING:P32529 PaxDb:P32529 PeptideAtlas:P32529
PRIDE:P32529 EnsemblFungi:YJR063W GeneID:853526 KEGG:sce:YJR063W
CYGD:YJR063w OMA:YHTLQLR NextBio:974215 Genevestigator:P32529
GermOnline:YJR063W Uniprot:P32529
Length = 125
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 233 RLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQT 292
++ T T ++ R + +K K E+ K G T + KC CG +YH +Q
Sbjct: 46 KVVTTTADDAFPSSLRAKKSVVKTSLK-KNEL---KDGATIKEKCPQCGNEEMNYHTLQL 101
Query: 293 RSADEPMTTYVTCAECNKRWK 313
RSADE T + TC C +++
Sbjct: 102 RSADEGATVFYTCTSCGYKFR 122
>MGI|MGI:2685236 [details] [associations]
symbol:Tceanc "transcription elongation factor A (SII)
N-terminal and central domain containing" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51319 PROSITE:PS51321 MGI:MGI:2685236
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 eggNOG:NOG280689 HOGENOM:HOG000234470 OrthoDB:EOG4T1HMR
EMBL:AK041519 EMBL:AK140929 EMBL:BC067008 IPI:IPI00653939
RefSeq:NP_001007578.2 UniGene:Mm.336318 ProteinModelPortal:Q3US16
SMR:Q3US16 PhosphoSite:Q3US16 PRIDE:Q3US16
Ensembl:ENSMUST00000112188 Ensembl:ENSMUST00000180322 GeneID:245695
KEGG:mmu:245695 InParanoid:Q3US16 NextBio:386930 Bgee:Q3US16
CleanEx:MM_A630018P17RIK Genevestigator:Q3US16 Uniprot:Q3US16
Length = 359
Score = 127 (49.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 42/156 (26%), Positives = 71/156 (45%)
Query: 171 TDRVKARDPKQVAASVERVMFEKLRPMGVAE-KRKHRSIMFNMSDEKNPDLRRRVLIGEV 229
TD + + +A +E +F L + + K RS + N+ + +N L++ L G +
Sbjct: 199 TDHTEVHIWQNLAREIEEHIFT-LHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTM 257
Query: 230 TPERLATMTPEELASDERRQENEEI-KAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCSY 287
+ A M+ ++AS E +Q ++ C +P+ GT T++ KC C K NC
Sbjct: 258 SAREFAEMSVLDMASQELKQLRASYTESSIQEHC-LPQSVDGTWTNKIKCRRCDKYNCKV 316
Query: 288 -----------HQMQTRSADEPMTTYVTCAECNKRW 312
+Q + DE MT YV C EC ++W
Sbjct: 317 TVIARGTLFLPSWVQNSNPDEQMT-YVICNECGEQW 351
Score = 47 (21.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 28/120 (23%), Positives = 49/120 (40%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSL-RHLKKHPCEKVQNAASELLHIWK--QKIVLGK---- 88
L L+ V+ + L T V +++ R LK P ++ A LL W+ K K
Sbjct: 30 LTELEMIYVSKEHLQETDVVRAVYRVLKNCPSVTLKKKAKCLLAKWRGFYKSTHCKPRQS 89
Query: 89 ----ETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDS 144
TN NK + +S D + + S++ G ++ + KP+ A ++ S
Sbjct: 90 PKVLHTNANKEESAAVSQDVSQDETSGSSHSEIMGLCSSLSRLLPQDAAKPAAAIGSESS 149
>CGD|CAL0004345 [details] [associations]
symbol:RPC11 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] [GO:0042797 "tRNA transcription
from RNA polymerase III promoter" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 CGD:CAL0004345 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 EMBL:AACQ01000059
EMBL:AACQ01000058 GO:GO:0003899 eggNOG:COG1594 KO:K03019
RefSeq:XP_717083.1 RefSeq:XP_717162.1 ProteinModelPortal:Q5A5N9
STRING:Q5A5N9 GeneID:3641239 GeneID:3641326 KEGG:cal:CaO19.12820
KEGG:cal:CaO19.5360 Uniprot:Q5A5N9
Length = 111
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
T Q CG + Q+Q RSADEPMTT+ C +C RWK
Sbjct: 67 TAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWK 109
>FB|FBgn0061362 [details] [associations]
symbol:CG33785 species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 EMBL:AE013599
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0009 InterPro:IPR019761
PROSITE:PS01030 KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071
RefSeq:NP_001027443.1 UniGene:Dm.1509 ProteinModelPortal:A1ZBX4
SMR:A1ZBX4 IntAct:A1ZBX4 STRING:A1ZBX4 PaxDb:A1ZBX4
EnsemblMetazoa:FBtr0091786 GeneID:3772344 KEGG:dme:Dmel_CG33785
FlyBase:FBgn0061362 InParanoid:A1ZBX4 OrthoDB:EOG4Q2BXV
PhylomeDB:A1ZBX4 NextBio:853393 Uniprot:A1ZBX4
Length = 108
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCA--ECNKRWK 313
+TD +C CG + Q+QTRSADEPMTT+ C ECN W+
Sbjct: 64 STDA-ECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWR 107
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 148 (57.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 44/135 (32%), Positives = 70/135 (51%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + ++A +E+ MF +
Sbjct: 662 QPNSQIRQNIRRSLKEILWKRVNDS-DDLIMTEN----EVGKIALHIEKEMFNLFQVTDN 716
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEE-IKAKF 258
K K+RSIMFN+ D KN L RVL E++ +L M PEEL S E E+ K+
Sbjct: 717 RYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSMWTEKPTKSVI 776
Query: 259 MFKCEV-PEKKKGTT 272
+ ++ E KK TT
Sbjct: 777 ESRTKLLNESKKNTT 791
Score = 40 (19.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 51 STQVGKSL--RHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSVDEKFQK 108
S Q+G + R L K E Q S+ + + GK T GN + + K +
Sbjct: 199 SVQIGSAEQDRPLCKQEPEASQGPVSQSETDDIENQLEGKATQGNTEENPREAGKPKPEC 258
Query: 109 QTSDSNAVKSGC 120
+ D NA+ C
Sbjct: 259 EVYDPNALYCIC 270
>CGD|CAL0006382 [details] [associations]
symbol:RPA12 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
CGD:CAL0006382 GO:GO:0005634 EMBL:AACQ01000095 EMBL:AACQ01000096
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 RefSeq:XP_714814.1
RefSeq:XP_714876.1 ProteinModelPortal:Q59Z13 STRING:Q59Z13
GeneID:3643477 GeneID:3643566 KEGG:cal:CaO19.2287
KEGG:cal:CaO19.9827 Uniprot:Q59Z13
Length = 123
Score = 111 (44.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 266 EKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
E +G T + KC CG YH +Q RSADE T + TC C R++
Sbjct: 73 ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTNCGYRFR 120
>SGD|S000002452 [details] [associations]
symbol:RPC11 "RNA polymerase III subunit C11" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0006386 "termination of RNA polymerase III
transcription" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IMP;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
SGD:S000002452 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006938 EMBL:Z49209 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 GO:GO:0006386 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 PDB:3QT1 PDBsum:3QT1
Reactome:REACT_87991 GO:GO:0042797 HOGENOM:HOG000228131 KO:K03019
OMA:ITRKVNN GeneTree:ENSGT00550000075071 OrthoDB:EOG469V4B
EMBL:AF108188 EMBL:AY557636 EMBL:AY899253 PIR:S54031
RefSeq:NP_010330.1 ProteinModelPortal:Q04307 SMR:Q04307
DIP:DIP-887N IntAct:Q04307 MINT:MINT-542850 STRING:Q04307
PaxDb:Q04307 PeptideAtlas:Q04307 EnsemblFungi:YDR045C GeneID:851615
KEGG:sce:YDR045C CYGD:YDR045c NextBio:969139 Genevestigator:Q04307
GermOnline:YDR045C Uniprot:Q04307
Length = 110
Score = 110 (43.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 280 CGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
CG + + Q+Q RSADEPMTT+ C C RWK
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
>WB|WBGene00007616 [details] [associations]
symbol:rpoa-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0000003 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:Z81035
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 OMA:YHTLQLR PIR:T19321 RefSeq:NP_506572.1 HSSP:Q56254
ProteinModelPortal:O17587 SMR:O17587 STRING:O17587 PaxDb:O17587
EnsemblMetazoa:C15H11.8.1 EnsemblMetazoa:C15H11.8.2 GeneID:182648
KEGG:cel:CELE_C15H11.8 UCSC:C15H11.8 CTD:182648 WormBase:C15H11.8
InParanoid:O17587 NextBio:918334 Uniprot:O17587
Length = 119
Score = 110 (43.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311
E E D C+ CG S SY MQTRSADE T + TC +C K+
Sbjct: 67 ENDESADAVVDHI-CTKCGHSKASYSTMQTRSADEGQTVFYTCLKCKKK 114
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 169 EITDRVKARDPKQ-VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIG 227
E+ D V + + + +AA +E +++ + K K+RS++FN+ D +N DL +V+ G
Sbjct: 42 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 101
Query: 228 EVTPERLATMTPEELASDE--RRQENEEIKAKFMFK-CE---VPEKKKGTTDQ 274
+VTP L M+ +LA E R ++ EE + MF C +P + TT Q
Sbjct: 102 DVTPYDLVRMSSMQLAPQELARWRDQEEKRGPQMFMDCSPQALPIASEDTTGQ 154
>UNIPROTKB|F1N3E8 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
IPI:IPI00686254 UniGene:Bt.6024 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:DAAA02057271
Ensembl:ENSBTAT00000026386 Uniprot:F1N3E8
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|E2QZU0 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761
PROSITE:PS01030 CTD:51728 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:AAEX03004698 RefSeq:XP_854405.2
Ensembl:ENSCAFT00000031350 GeneID:611625 KEGG:cfa:611625
Uniprot:E2QZU0
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|F1PIF7 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0005634 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
GeneTree:ENSGT00390000008126 OMA:SRCGHEG InterPro:IPR019761
PROSITE:PS01030 EMBL:AAEX03017624 ProteinModelPortal:F1PIF7
Ensembl:ENSCAFT00000019352 Uniprot:F1PIF7
Length = 126
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +CS CG +YH Q RSADE T + TC C
Sbjct: 74 EEPELQGPVVDR-RCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 118
>UNIPROTKB|Q9Y2Y1 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 EMBL:AE006462 GO:GO:0008270 GO:GO:0045087
GO:GO:0051607 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
EMBL:DQ431198 GO:GO:0006386 GO:GO:0006385 EMBL:Z69719
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:51728
HOGENOM:HOG000228131 HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P
EMBL:AF126531 EMBL:AF051316 EMBL:AF060223 EMBL:BC011932
IPI:IPI00008461 RefSeq:NP_057394.2 UniGene:Hs.632223
ProteinModelPortal:Q9Y2Y1 SMR:Q9Y2Y1 STRING:Q9Y2Y1
PhosphoSite:Q9Y2Y1 DMDM:116242768 PRIDE:Q9Y2Y1 DNASU:51728
Ensembl:ENST00000293860 GeneID:51728 KEGG:hsa:51728 UCSC:uc002cfi.2
GeneCards:GC16M000096 H-InvDB:HIX0012635 HGNC:HGNC:14121
HPA:HPA005891 MIM:606007 neXtProt:NX_Q9Y2Y1 PharmGKB:PA33521
InParanoid:Q9Y2Y1 OMA:ITRKVNN PhylomeDB:Q9Y2Y1 BindingDB:Q9Y2Y1
ChEMBL:CHEMBL2144 ChiTaRS:POLR3K GenomeRNAi:51728 NextBio:55788
Bgee:Q9Y2Y1 CleanEx:HS_POLR3K Genevestigator:Q9Y2Y1
GermOnline:ENSG00000161980 Uniprot:Q9Y2Y1
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|F2Z4X7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071 EMBL:FP103025
RefSeq:XP_003124725.1 ProteinModelPortal:F2Z4X7 SMR:F2Z4X7
Ensembl:ENSSSCT00000008733 GeneID:100521261 KEGG:ssc:100521261
Uniprot:F2Z4X7
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>MGI|MGI:1914255 [details] [associations]
symbol:Polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:10090 "Mus musculus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 MGI:MGI:1914255 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0003899 UniGene:Mm.271986 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
ChiTaRS:POLR3K EMBL:AK005152 EMBL:AK010875 EMBL:AK021353
EMBL:AK031110 IPI:IPI00133407 RefSeq:NP_080177.1
ProteinModelPortal:Q9CQZ7 SMR:Q9CQZ7 STRING:Q9CQZ7
PhosphoSite:Q9CQZ7 Ensembl:ENSMUST00000039551 GeneID:67005
KEGG:mmu:67005 GeneTree:ENSGT00550000075071 InParanoid:Q9CQZ7
NextBio:323282 Bgee:Q9CQZ7 CleanEx:MM_POLR3K Genevestigator:Q9CQZ7
GermOnline:ENSMUSG00000038628 Uniprot:Q9CQZ7
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|Q5FVH1 [details] [associations]
symbol:Polr3k "DNA-directed RNA polymerase subunit"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 EMBL:CH474066 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:BC089990 IPI:IPI00368843
RefSeq:NP_001014281.1 UniGene:Rn.92563 SMR:Q5FVH1 STRING:Q5FVH1
Ensembl:ENSRNOT00000024096 GeneID:366277 KEGG:rno:366277
RGD:1587294 InParanoid:Q5FVH1 NextBio:689123 Genevestigator:Q5FVH1
Uniprot:Q5FVH1
Length = 108
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 131 (51.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 40/147 (27%), Positives = 72/147 (48%)
Query: 110 TSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEE 169
+SD +SG A+E + Q K S+ +R + +++ V E
Sbjct: 569 SSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRL--RE 626
Query: 170 ITDRVKARDPKQ-VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGE 228
+ D V + + + +AA +E +++ + K K+RS++FN+ D +N DL +V+ G+
Sbjct: 627 LPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGD 686
Query: 229 VTPERLATMTPEELASDE--RRQENEE 253
VTP L M+ +LA E R ++ EE
Sbjct: 687 VTPYDLVRMSSMQLAPQELARWRDQEE 713
>UNIPROTKB|Q1RMP0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:BC114799
IPI:IPI00708048 RefSeq:NP_001039865.1 RefSeq:XP_003583930.1
UniGene:Bt.1771 ProteinModelPortal:Q1RMP0 STRING:Q1RMP0
Ensembl:ENSBTAT00000045075 GeneID:100849450 GeneID:535288
KEGG:bta:100849450 KEGG:bta:535288 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 InParanoid:Q1RMP0 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM NextBio:20876684 ArrayExpress:Q1RMP0
InterPro:IPR019761 PROSITE:PS01030 Uniprot:Q1RMP0
Length = 123
Score = 102 (41.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +CS CG +YH Q RSADE T + TC C
Sbjct: 71 EGPEFQGPVVDR-RCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 138 (53.6 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + ++A +E+ MF +
Sbjct: 665 QPNSQIRQNIRRSLKEILWKRVNDS-DDLIMTEN----EVGKIALHIEKEMFNLFQVTDN 719
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
K K+RSIMFN+ D KN L RVL E++ +L + PEEL S E
Sbjct: 720 RYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKE 766
Score = 42 (19.8 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 108 KQTSDSNAVKSGCSTAKEKKATASIRKP 135
KQ + N V S A AT +I+KP
Sbjct: 559 KQPAPRNLVPKKSSFANVAAATPAIKKP 586
Score = 38 (18.4 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 249 QENEEIKAKFMFKCEVPEKKK 269
++NE+ ++F F+ + P+ K
Sbjct: 2000 EKNEQTPSRFHFQGQAPQVMK 2020
>UNIPROTKB|I3LRU2 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
OMA:WKVHCHR CTD:6924 EMBL:FP475977 RefSeq:XP_003356245.1
Ensembl:ENSSSCT00000027579 GeneID:100620801 KEGG:ssc:100620801
Uniprot:I3LRU2
Length = 805
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 41/166 (24%), Positives = 74/166 (44%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI 84
+ P+ ++ LK L A P+T D+L T VGK++ L+KH E V + A +L+ WK+ +
Sbjct: 45 ANPDPKKLLKYLKKLSALPITIDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLV 102
Query: 85 VLGK----------ETNGNKRNGSKLSVDEKFQKQTSDSNAVK-SGCSTAKEKKATASIR 133
+ + ++N KR L +E+ + + + K SG + R
Sbjct: 103 PVERNPEPDEQDLEKSNSRKRPRDALKEEEEVEGEGDYPESWKASGSRSYSPDNRQKKHR 162
Query: 134 KPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDP 179
K S ++ + + R+D K R + + D E +D + P
Sbjct: 163 KLSELERPQKVSHSQERRDERKRYHRASPVYSSDHESSDYGHVQSP 208
>UNIPROTKB|G5EHE0 [details] [associations]
symbol:MGCH7_ch7g875 "DNA-directed RNA polymerase subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:CM000230 EMBL:CM001237 GO:GO:0003899 KO:K03019
RefSeq:XP_003720603.1 ProteinModelPortal:G5EHE0
EnsemblFungi:MGG_03072T0 GeneID:2682625 KEGG:mgr:MGG_03072
Uniprot:G5EHE0
Length = 110
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 268 KKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+KG Q C ++ Q+Q RSADEPMT++ C C RW+
Sbjct: 64 QKGRV-QCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMTCGHRWR 108
>ZFIN|ZDB-GENE-040718-291 [details] [associations]
symbol:polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
ZFIN:ZDB-GENE-040718-291 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:CU463855 EMBL:BC076249
IPI:IPI00483579 RefSeq:NP_001002553.1 UniGene:Dr.132213
STRING:Q6DGU0 Ensembl:ENSDART00000055129 GeneID:436826
KEGG:dre:436826 InParanoid:Q6DGU0 NextBio:20831258 Uniprot:Q6DGU0
Length = 108
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTCA--ECNKRWK 313
C C + Q+QTRSADEPMTT+ C +C RW+
Sbjct: 69 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWR 107
>ZFIN|ZDB-GENE-050320-131 [details] [associations]
symbol:znrd1 "zinc ribbon domain containing 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 ZFIN:ZDB-GENE-050320-131
GO:GO:0005634 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 GeneTree:ENSGT00390000008126 InterPro:IPR019761
PROSITE:PS01030 EMBL:FP085397 EMBL:BX537309 IPI:IPI00994518
Ensembl:ENSDART00000139323 ArrayExpress:F1R4I1 Bgee:F1R4I1
Uniprot:F1R4I1
Length = 126
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 19/40 (47%), Positives = 20/40 (50%)
Query: 269 KGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
KG KCS C K YH Q RSADE T + TC C
Sbjct: 79 KGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHC 118
>UNIPROTKB|A6QPU3 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 SMART:SM00509 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676
eggNOG:NOG114994 GeneTree:ENSGT00390000002428 CTD:6924
OrthoDB:EOG495ZRB EMBL:DAAA02006428 EMBL:BC149490 IPI:IPI00698479
RefSeq:NP_001095803.1 UniGene:Bt.74649 Ensembl:ENSBTAT00000037847
GeneID:784844 KEGG:bta:784844 HOGENOM:HOG000213208
InParanoid:A6QPU3 NextBio:20926931 Uniprot:A6QPU3
Length = 264
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 37/153 (24%), Positives = 66/153 (43%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
LK L A P+T D+L T VGK++ L+KH E V N A +L+ WK+ + + + T ++
Sbjct: 30 LKKLSALPITVDILAETGVGKTVNSLRKH--EHVGNFARDLVAQWKKLVPVERTTEPEEQ 87
Query: 96 NGSKLSVDEK----FQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKI-- 149
N K S ++ +++ + + + R+ H + K+
Sbjct: 88 NFEKSSSRKRPRDALREEAEIEGDYPESWKASSSQSCSPDNRQKKHRKLPELERPHKVSH 147
Query: 150 ---RKDLEKALSRVASEAADDEEITDRVKARDP 179
R+D K R + + D E +D + P
Sbjct: 148 SHGRRDERKRYHRASPVYSSDHESSDYGHVQSP 180
>GENEDB_PFALCIPARUM|PFB0290c [details] [associations]
symbol:PFB0290c "transcription factor, putative"
species:5833 "Plasmodium falciparum" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0008270 GO:GO:0003700 GO:GO:0003676 GO:GO:0006383
EMBL:AE001362 GO:GO:0005666 GO:GO:0003899 HOGENOM:HOG000228131
KO:K03019 OMA:ITRKVNN HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ K T Q C C ++ +Q RSADEP T + C +CN WK
Sbjct: 56 DINNKNMSKT-QAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWK 105
>UNIPROTKB|Q2M2S7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0003899
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 EMBL:BC111667
IPI:IPI00686254 RefSeq:NP_001040082.1 UniGene:Bt.6024
ProteinModelPortal:Q2M2S7 STRING:Q2M2S7 GeneID:618296
KEGG:bta:618296 CTD:51728 HOGENOM:HOG000228131 HOVERGEN:HBG055716
InParanoid:Q2M2S7 KO:K03019 OrthoDB:EOG44BB3P NextBio:20901107
Uniprot:Q2M2S7
Length = 108
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTR ADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWR 107
>UNIPROTKB|O96159 [details] [associations]
symbol:PFB0290c "DNA-directed RNA polymerase subunit"
species:36329 "Plasmodium falciparum 3D7" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISS] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003700
GO:GO:0003676 GO:GO:0006383 EMBL:AE001362 GO:GO:0005666
GO:GO:0003899 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ K T Q C C ++ +Q RSADEP T + C +CN WK
Sbjct: 56 DINNKNMSKT-QAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWK 105
>RGD|1303114 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 RGD:1303114 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 IPI:IPI00422027
RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312
ProteinModelPortal:Q6MFY5 STRING:Q6MFY5 PRIDE:Q6MFY5
Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784
UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596
Genevestigator:Q6MFY5 GermOnline:ENSRNOG00000000779 Uniprot:Q6MFY5
Length = 123
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +CS CG +Y+ Q RSADE T + TC C
Sbjct: 71 EGPESQGPVVDR-RCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>WB|WBGene00022309 [details] [associations]
symbol:rpc-11 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:FO081581 HSSP:Q56254
RefSeq:NP_500076.1 ProteinModelPortal:Q9N4B7 SMR:Q9N4B7
IntAct:Q9N4B7 STRING:Q9N4B7 EnsemblMetazoa:Y77E11A.6 GeneID:176950
KEGG:cel:CELE_Y77E11A.6 UCSC:Y77E11A.6 CTD:176950
WormBase:Y77E11A.6 InParanoid:Q9N4B7 NextBio:894706 Uniprot:Q9N4B7
Length = 108
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAE--CNKRWK 313
TD+ C C + Q+QTRSADEP T + CA+ C RWK
Sbjct: 65 TDE-TCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWK 107
>UNIPROTKB|F1PHL5 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001810 InterPro:IPR010684
InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181
PROSITE:PS51319 GO:GO:0016021 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 OMA:WKVHCHR EMBL:AAEX03001748
Ensembl:ENSCAFT00000020984 Uniprot:F1PHL5
Length = 744
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 42/172 (24%), Positives = 77/172 (44%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGK------- 88
LK L P+T D+L T VGK++ L+KH E V + A +L+ WK+ + + +
Sbjct: 6 LKKLSTLPITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNPEPDEQ 63
Query: 89 ---ETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM 145
+TN KR + +E+ + ++ S S + + + RK S ++
Sbjct: 64 DFEKTNSRKRPRDAVQKEEEIEGDYQENWKASSSQSYSPDHRQKKH-RKLSEPERTHKVS 122
Query: 146 RDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPM 197
+ R+D K R++ + D E +D + P +AS +V + R +
Sbjct: 123 HVQERRDERKRCHRISPVYSSDHESSDYGHVQSPPS-SASPHQVSMDHYRSL 173
>RGD|3827 [details] [associations]
symbol:Tceb3 "transcription elongation factor B (SIII), polypeptide
3" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding" evidence=TAS]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0008023 "transcription elongation factor
complex" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827 GO:GO:0016021
GO:GO:0006357 GO:GO:0003690 GO:GO:0006368 GO:GO:0008023
HOGENOM:HOG000059565 HOVERGEN:HBG051467 Gene3D:1.20.930.10
SUPFAM:SSF47676 eggNOG:NOG114994 OrthoDB:EOG495ZRB EMBL:L46816
IPI:IPI00326357 PIR:A57244 UniGene:Rn.37427 ProteinModelPortal:Q63187
STRING:Q63187 PhosphoSite:Q63187 PRIDE:Q63187 UCSC:RGD:3827
InParanoid:Q63187 ArrayExpress:Q63187 Genevestigator:Q63187
GermOnline:ENSRNOG00000010902 Uniprot:Q63187
Length = 773
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 40/165 (24%), Positives = 74/165 (44%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI 84
+ P+ ++ LK L P+T D+LV T VGK++ +KH E+V N A +L+ WK+ +
Sbjct: 19 ANPDPKKLLKYLKKLSVLPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
Query: 85 VLGKETNGN-----KRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHAD 139
+ + K N K D Q++ ++ N +S ++ + + R+ H
Sbjct: 77 PVERNNEAEDQDFEKSNSRKRPRDVPQQEEEAEGNYQESWQASGSQPYSPEH-RQKKHRK 135
Query: 140 QAKDSMRDKI-----RKDLEKALSRVASEAADDEEITDRVKARDP 179
+ K+ R+D K +V+ + D E +D + P
Sbjct: 136 LPELERPHKVAHGHERRDERKRCHKVSPPYSSDPESSDYGHVQSP 180
>UNIPROTKB|Q66HK4 [details] [associations]
symbol:Tceb3 "Transcription elongation factor B polypeptide
3" species:10116 "Rattus norvegicus" [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827
GO:GO:0016021 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003746 EMBL:CH473968 HOVERGEN:HBG051467
KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 CTD:6924 UniGene:Rn.37427
EMBL:BC081815 IPI:IPI00851142 RefSeq:NP_058799.2 STRING:Q66HK4
Ensembl:ENSRNOT00000064596 GeneID:25562 KEGG:rno:25562
InParanoid:Q66HK4 NextBio:607153 Genevestigator:Q66HK4
Uniprot:Q66HK4
Length = 773
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 40/165 (24%), Positives = 74/165 (44%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI 84
+ P+ ++ LK L P+T D+LV T VGK++ +KH E+V N A +L+ WK+ +
Sbjct: 19 ANPDPKKLLKYLKKLSVLPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
Query: 85 VLGKETNGN-----KRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHAD 139
+ + K N K D Q++ ++ N +S ++ + + R+ H
Sbjct: 77 PVERNNEAEDQDFEKSNSRKRPRDVPQQEEEAEGNYQESWQASGSQPYSPEH-RQKKHRK 135
Query: 140 QAKDSMRDKI-----RKDLEKALSRVASEAADDEEITDRVKARDP 179
+ K+ R+D K +V+ + D E +D + P
Sbjct: 136 LPELERPHKVAHGHERRDERKRCHKVSPPYSSDPESSDYGHVQSP 180
>UNIPROTKB|G3N2S6 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR010684
InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711 PROSITE:PS51319
SMART:SM00509 GO:GO:0016021 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 OMA:WKVHCHR EMBL:DAAA02006428
Ensembl:ENSBTAT00000063789 Uniprot:G3N2S6
Length = 803
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 40/171 (23%), Positives = 73/171 (42%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
LK L A P+T D+L T VGK++ L+KH E V N A +L+ WK+ + + + T ++
Sbjct: 56 LKKLSALPITVDILAETGVGKTVNSLRKH--EHVGNFARDLVAQWKKLVPVERTTEPEEQ 113
Query: 96 NGSKLSVDEK----FQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKI-- 149
N K S ++ +++ + + + R+ H + K+
Sbjct: 114 NFEKSSSRKRPRDALREEAEIEGDYPESWKASSSQSCSPDNRQKKHRKLPELERPHKVSH 173
Query: 150 ---RKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPM 197
R+D K R + + D E +D + P + S + + RP+
Sbjct: 174 SHGRRDERKRYHRASPVYSSDHESSDYGHVQSPPP-STSPHHMSLDHYRPL 223
>UNIPROTKB|Q9P1U0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=TAS]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005730 GO:GO:0046872 GO:GO:0006139 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:AL669914
EMBL:AL671859 EMBL:AL845439 EMBL:BX088647 CTD:30834 eggNOG:COG1594
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF024617
EMBL:AF230337 EMBL:AF230338 EMBL:CR457109 EMBL:BC010898
EMBL:BC050608 IPI:IPI00395539 RefSeq:NP_055411.1 RefSeq:NP_740753.1
UniGene:Hs.57813 ProteinModelPortal:Q9P1U0 SMR:Q9P1U0 IntAct:Q9P1U0
MINT:MINT-1435192 STRING:Q9P1U0 DMDM:71649339 PaxDb:Q9P1U0
PeptideAtlas:Q9P1U0 PRIDE:Q9P1U0 DNASU:30834
Ensembl:ENST00000332435 Ensembl:ENST00000359374
Ensembl:ENST00000376782 Ensembl:ENST00000376785
Ensembl:ENST00000383613 Ensembl:ENST00000400659
Ensembl:ENST00000400660 Ensembl:ENST00000400662
Ensembl:ENST00000412396 Ensembl:ENST00000417275
Ensembl:ENST00000417738 Ensembl:ENST00000420100
Ensembl:ENST00000428913 Ensembl:ENST00000429558
Ensembl:ENST00000431032 Ensembl:ENST00000431416
Ensembl:ENST00000432227 Ensembl:ENST00000432545
Ensembl:ENST00000432904 Ensembl:ENST00000433264
Ensembl:ENST00000437373 Ensembl:ENST00000437507
Ensembl:ENST00000441251 Ensembl:ENST00000442585
Ensembl:ENST00000443142 Ensembl:ENST00000443494
Ensembl:ENST00000444027 Ensembl:ENST00000444794
Ensembl:ENST00000446493 Ensembl:ENST00000451875
Ensembl:ENST00000453694 Ensembl:ENST00000455948 GeneID:30834
KEGG:hsa:30834 UCSC:uc003noz.3 GeneCards:GC06P030026
HGNC:HGNC:13182 MIM:607525 neXtProt:NX_Q9P1U0 PharmGKB:PA37754
InParanoid:Q9P1U0 PhylomeDB:Q9P1U0 GenomeRNAi:30834 NextBio:52944
ArrayExpress:Q9P1U0 Bgee:Q9P1U0 CleanEx:HS_ZNRD1
Genevestigator:Q9P1U0 GermOnline:ENSG00000066379 Uniprot:Q9P1U0
Length = 126
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +C CG +YH Q RSADE T + TC C
Sbjct: 74 EGPECQGPVVDR-RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>UNIPROTKB|B6ICU4 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:CT737425 EMBL:CU607067
EMBL:AB158486 EMBL:AB158487 EMBL:AP009553 RefSeq:NP_001162172.1
RefSeq:XP_001929376.1 UniGene:Ssc.45148 STRING:B6ICU4
Ensembl:ENSSSCT00000001352 Ensembl:ENSSSCT00000001359
Ensembl:ENSSSCT00000034579 GeneID:100152094 GeneID:100155727
KEGG:ssc:100152094 KEGG:ssc:100155727 Uniprot:B6ICU4
Length = 123
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +C CG +YH Q RSADE T + TC C
Sbjct: 71 EGPEFQGPVVDR-RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>POMBASE|SPCC1259.03 [details] [associations]
symbol:rpa12 "DNA-directed RNA polymerase complex I
subunit Rpa12" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IGI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
PomBase:SPCC1259.03 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 GO:GO:0006353
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:AF219943 EMBL:AB023403 EMBL:AB023817
PIR:T40892 RefSeq:NP_588059.1 ProteinModelPortal:O94703
STRING:O94703 PRIDE:O94703 EnsemblFungi:SPCC1259.03.1
GeneID:2538906 KEGG:spo:SPCC1259.03 OMA:CGNLLES OrthoDB:EOG45QMPS
NextBio:20800084 Uniprot:O94703
Length = 119
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 266 EKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
+K++ T + KC CG + ++H +Q RSADE T + C C
Sbjct: 69 QKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRC 111
>MGI|MGI:1913386 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing, 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Reactome:REACT_78136 InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 MGI:MGI:1913386 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF230339
EMBL:AF230340 EMBL:AK003714 EMBL:BC043016 EMBL:AK005976
IPI:IPI00133128 RefSeq:NP_075651.1 UniGene:Mm.486229
ProteinModelPortal:Q791N7 SMR:Q791N7 STRING:Q791N7 PRIDE:Q791N7
Ensembl:ENSMUST00000113669 Ensembl:ENSMUST00000172518 GeneID:66136
KEGG:mmu:66136 UCSC:uc008clo.1 InParanoid:Q791N7
Reactome:REACT_86751 NextBio:320734 Bgee:Q791N7 CleanEx:MM_ZNRD1
Genevestigator:Q791N7 GermOnline:ENSMUSG00000036315 Uniprot:Q791N7
Length = 123
Score = 96 (38.9 bits), Expect = 0.00026, P = 0.00026
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +C CG +YH Q RSADE T + TC C
Sbjct: 71 EGPELQGPVIDR-RCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 130 (50.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 134 KPSHADQAKDS-----MRDKIRKD--LEKALSRVASEAADD--EEITDRVKARDPKQ-VA 183
KP + A+DS ++K+ D + + R E +E+ D V + + +A
Sbjct: 517 KPDEQNGAEDSAQLWPQQEKLPLDAGVRSTVVRAMREVLWSRLQELPDLVLSEGAVEGLA 576
Query: 184 ASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELA 243
A +E +F+ + K+RS++FN+ D +NPDL +V+ G+VTP+ L M +LA
Sbjct: 577 AGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQLA 636
Query: 244 SDE--RRQENEE 253
E R ++ EE
Sbjct: 637 PQELARWRDQEE 648
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 30 QRCADALKHLQAFPVTYD 47
+ CA ++ L++ P+ D
Sbjct: 220 EECASGIEKLESLPIAGD 237
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 182 VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEE 241
+AA +E +F + K K+RS++FN+ D +NP+L +V+ G++TP L M+ +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 242 LASDE--RRQENEE 253
LA E R ++ EE
Sbjct: 634 LAPQELARWRDQEE 647
>MGI|MGI:1351315 [details] [associations]
symbol:Tceb3 "transcription elongation factor B (SIII),
polypeptide 3" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0008023 "transcription elongation factor complex" evidence=ISO]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001810
InterPro:IPR003617 InterPro:IPR010684 InterPro:IPR017923
Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181 PROSITE:PS51319
SMART:SM00509 MGI:MGI:1351315 GO:GO:0016021 EMBL:CH466552
GO:GO:0003677 GO:GO:0006357 GO:GO:0006368 GO:GO:0008023
EMBL:AL672076 HOGENOM:HOG000059565 HOVERGEN:HBG051467 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG114994
GeneTree:ENSGT00390000002428 OMA:WKVHCHR CTD:6924 OrthoDB:EOG495ZRB
EMBL:AB025015 EMBL:AK036592 EMBL:AK145994 EMBL:AK147088
EMBL:BC049885 IPI:IPI00317167 RefSeq:NP_038764.2 UniGene:Mm.27663
ProteinModelPortal:Q8CB77 SMR:Q8CB77 IntAct:Q8CB77 STRING:Q8CB77
PhosphoSite:Q8CB77 PaxDb:Q8CB77 PRIDE:Q8CB77
Ensembl:ENSMUST00000030427 GeneID:27224 KEGG:mmu:27224
InParanoid:Q3UI38 NextBio:305140 Bgee:Q8CB77 Genevestigator:Q8CB77
GermOnline:ENSMUSG00000028668 Uniprot:Q8CB77
Length = 773
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 35/164 (21%), Positives = 73/164 (44%)
Query: 25 SEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI 84
+ P+ ++ LK L P+T D+LV T VGK++ +KH E+V N A +L+ WK+ +
Sbjct: 19 ANPDPKKLLKYLKKLSILPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
Query: 85 VLGKETNGN----KRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQ 140
+ + + ++N S+ + Q++ + + + + R+ H
Sbjct: 77 PVERNSEAEDQDFEKNNSRKRPRDALQREEELEGNYQESWKPSGSRSYSPEHRQKKHKKL 136
Query: 141 AKDSMRDKI-----RKDLEKALSRVASEAADDEEITDRVKARDP 179
++ K+ ++D K +V+ + D E +D + P
Sbjct: 137 SEPERPHKVAHSHEKRDERKRCHKVSPPYSSDPESSDYGHVQSP 180
>POMBASE|SPCC645.13 [details] [associations]
symbol:SPCC645.13 "transcription elongation regulator
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0019787 "small conjugating protein ligase
activity" evidence=ISM] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
PomBase:SPCC645.13 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0019787
GO:GO:0034244 EMBL:AB027885 EMBL:AB027953 PIR:T41530
RefSeq:NP_588122.1 ProteinModelPortal:Q9Y7V2
EnsemblFungi:SPCC645.13.1 GeneID:2538700 KEGG:spo:SPCC645.13
OMA:ELESSEP OrthoDB:EOG4PRX19 NextBio:20799886 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 Uniprot:Q9Y7V2
Length = 721
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 44/172 (25%), Positives = 79/172 (45%)
Query: 94 KRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDL 153
KR GS + K++ NA K+ A + TA K + D +++ +RK +
Sbjct: 167 KRRGS-VGTTATHTKRSK--NAPKTSPKDASNE--TADQEKELSLHTSIDEIQNPVRKSV 221
Query: 154 EKALSRVASEAADDEEI--TDRVKARDPKQVAASVERVMF--------EKLRPMGVAEKR 203
KA V + + ++ ++ + +A +E +MF L P +
Sbjct: 222 AKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTPNN-KYRE 280
Query: 204 KHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIK 255
K R++ FN+ D+KNP R RVL E++ L ++ EE+A+ + + EEI+
Sbjct: 281 KFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEIR 332
>UNIPROTKB|Q5JRI8 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL590548 EMBL:AL355803 UniGene:Hs.505004
UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00384330 SMR:Q5JRI8
STRING:Q5JRI8 Ensembl:ENST00000415602 UCSC:uc010gku.2
Uniprot:Q5JRI8
Length = 82
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A P+T LL ST+VG S+ L+K E+V A L+ WK K++ +
Sbjct: 2 DLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK-KLLDASDAKA 60
Query: 93 NKRN-GSKLSVDEKFQKQTSD 112
+R G L + + D
Sbjct: 61 RERGRGMPLPTSSRDASEAPD 81
>UNIPROTKB|E5RIS7 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00975678
ProteinModelPortal:E5RIS7 SMR:E5RIS7 PRIDE:E5RIS7
Ensembl:ENST00000520534 ArrayExpress:E5RIS7 Bgee:E5RIS7
Uniprot:E5RIS7
Length = 111
Score = 93 (37.8 bits), Expect = 0.00054, P = 0.00054
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKET 90
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPST 82
>POMBASE|SPAC22A12.05 [details] [associations]
symbol:rpc11 "DNA-directed RNA polymerase III complex
subunit Rpc11" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=ISM] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042779 "tRNA 3'-trailer cleavage" evidence=IGI;IMP]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 PomBase:SPAC22A12.05
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0005666 GO:GO:0003899
GO:GO:0042779 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228131 KO:K03019 EMBL:AF027823 EMBL:AF126532
PIR:T38145 RefSeq:NP_593235.1 ProteinModelPortal:O13896
DIP:DIP-29537N STRING:O13896 EnsemblFungi:SPAC22A12.05.1
GeneID:2541521 KEGG:spo:SPAC22A12.05 OMA:HVEGNAL OrthoDB:EOG469V4B
NextBio:20802619 GO:GO:0006384 Uniprot:O13896
Length = 109
Score = 93 (37.8 bits), Expect = 0.00054, P = 0.00054
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 CGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
C + + Q+Q RSADEPM+T+ C +C +W+
Sbjct: 74 CDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWR 107
>UNIPROTKB|F1NWL1 [details] [associations]
symbol:LOC421892 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881
Pfam:PF08711 PROSITE:PS51319 GO:GO:0016021 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000002428 EMBL:AADN02002726
EMBL:AADN02002727 IPI:IPI00588307 Ensembl:ENSGALT00000031636
OMA:DHLWGKH Uniprot:F1NWL1
Length = 592
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 59/251 (23%), Positives = 105/251 (41%)
Query: 35 ALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGN- 93
AL+ LQ ++ D+L T +GK++ +KH N A L+ WK+ +L ET
Sbjct: 28 ALELLQDLDISLDILTETGIGKTVNSFRKHAT--AGNVAKSLVKKWKK--LLPPETKSRV 83
Query: 94 -KRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
+ G EK + S + S ++K K I K H ++A +S +D+ +
Sbjct: 84 ISKEGKP---SEKSKTSVPASQSSNSSSISSKLNKQRNYIEK-KHQNRASESQKDRGSRK 139
Query: 153 LEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNM 212
+ S+ S+ A + K R K + E+ +K K + +
Sbjct: 140 CHGSGSKRTSQEAGPQAKESNCKERASKDNRKAPEKQCSRVAGKDSFPKKEKPK----DA 195
Query: 213 SDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKK--- 269
S +++P + E+ E+LA + EL DE + ++ +V +K+K
Sbjct: 196 SKQRDPKT-----VTELK-EKLAVRSKAELPGDEEFEPPTMSFESYLNYDQVTKKRKRKA 249
Query: 270 GTTDQF--KCS 278
G+T + KCS
Sbjct: 250 GSTGERPGKCS 260
>TAIR|locus:2092185 [details] [associations]
symbol:AT3G25940 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 HSSP:P23193
EMBL:AY084292 EMBL:BT024567 IPI:IPI00539114 RefSeq:NP_566786.1
UniGene:At.37301 ProteinModelPortal:Q9LU97 SMR:Q9LU97 IntAct:Q9LU97
STRING:Q9LU97 PaxDb:Q9LU97 PRIDE:Q9LU97 EnsemblPlants:AT3G25940.1
GeneID:822191 KEGG:ath:AT3G25940 TAIR:At3g25940 InParanoid:Q9LU97
OMA:EINKKCE PhylomeDB:Q9LU97 ProtClustDB:CLSN2688785
Genevestigator:Q9LU97 Uniprot:Q9LU97
Length = 119
Score = 92 (37.4 bits), Expect = 0.00070, P = 0.00070
Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 243 ASDERRQENEEIKA-KFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTT 301
A D RR+ + K + E+P+ KK C C Y QTRSADE TT
Sbjct: 52 AEDIRRELGISLFGEKTQAEAELPKIKKA------CEKCQHPELVYTTRQTRSADEGQTT 105
Query: 302 YVTCAECNKRW 312
Y TC C R+
Sbjct: 106 YYTCPNCAHRF 116
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 169 EITDRVKARDPKQ-VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIG 227
E+ D V + + + +AA +E +++ + K K+RS++FN+ D +N DL +V+ G
Sbjct: 63 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 122
Query: 228 EVTPERLATMTPEELASDE--RRQENEE 253
+VTP L M+ +LA E R ++ EE
Sbjct: 123 DVTPYDLVRMSSMQLAPQELARWRDQEE 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.126 0.357 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 314 303 0.00097 115 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 120
No. of states in DFA: 608 (65 KB)
Total size of DFA: 208 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.77u 0.08s 36.85t Elapsed: 00:00:02
Total cpu time: 36.79u 0.08s 36.87t Elapsed: 00:00:02
Start: Mon May 20 20:01:23 2013 End: Mon May 20 20:01:25 2013
WARNINGS ISSUED: 1