BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035641
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 158/292 (54%), Gaps = 30/292 (10%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLG----K 88
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G K
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTEK 84
Query: 89 ETNGNKRNGSKLSVD--EKFQKQTSDSNAVKSGCST-AKEKKATASIRKPSHADQAKDSM 145
+ + K+ + S + E ++ TS N T A++ ++ R PS +D S+
Sbjct: 85 DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSD----SV 140
Query: 146 RDKIRKDLEKALSRVASE----AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE 201
R K R+ L AL R + AD+EE+ + +E +++++R +
Sbjct: 141 RLKCREMLAAAL-RTGDDYIAIGADEEEL------------GSQIEEAIYQEIRNTDMKY 187
Query: 202 KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFK 261
K + RS + N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + +
Sbjct: 188 KNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIRE 247
Query: 262 CEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 248 HQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 30/292 (10%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRN-------GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM 145
+ S+ S + + + +S + + + + A++ ++ R PS +D S+
Sbjct: 85 DSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSD----SV 140
Query: 146 RDKIRKDLEKALSRVASE----AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE 201
R K R+ L AL R + AD+EE+ + +E +++++R +
Sbjct: 141 RLKCREMLAAAL-RTGDDYIAIGADEEEL------------GSQIEEAIYQEIRNTDMKY 187
Query: 202 KRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFK 261
K + RS + N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + +
Sbjct: 188 KNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIRE 247
Query: 262 CEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 248 HQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 15/282 (5%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A P+T LL ST+VG S+ L+K E+V A L+ WK K++ +
Sbjct: 29 DLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWK-KLLDASDAKA 87
Query: 93 NKRN-GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRK 151
+R G L + + D + + A +T I D++R+K R+
Sbjct: 88 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAP---STPRITTFPPVPVTCDAVRNKCRE 144
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL D + + D ++++A +E +F + + K + RS + N
Sbjct: 145 MLTAALQ------TDHDHV---AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISN 195
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNPDLRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 196 LKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQ 255
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C C K NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 256 TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 297
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 157/291 (53%), Gaps = 28/291 (9%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ L+K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRN-------GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM 145
+ S+ S + + + +S + + + + A++ ++ R PS +D S+
Sbjct: 85 DPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSD----SV 140
Query: 146 RDKIRKDLEKAL---SRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
R K R+ L AL + AD+EE+ + +E +++++R + K
Sbjct: 141 RLKCREMLAAALRTGDDYVAIGADEEEL------------GSQIEEAIYQEIRNTDMKYK 188
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + +
Sbjct: 189 NRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREH 248
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 249 QMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 12/281 (4%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+A PVT LL ST+VG S+ L+K E+V A L+ WK+ +
Sbjct: 29 DLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDASDAKAR 88
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
+R G L K+ S++ +T I D++R K R+
Sbjct: 89 ERRRGGSLPTSS--SKEASEAQDPSRKRPELPRMPSTPRITTFPPVPVTCDAVRTKCREM 146
Query: 153 LEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNM 212
L AL D + + D + +A +E +F + + K + RS + N+
Sbjct: 147 LTAALQ------TDHDHV---AIGADCECLAGQIEECIFRDVGNTDMKYKNRVRSRLSNL 197
Query: 213 SDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTT 272
D KNP LRR+VL G +TP+++A MT EE+ASDE ++ + + + + + ++ T
Sbjct: 198 KDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQT 257
Query: 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
D F C C K NC+Y Q+QTRS+DEPMTT+V C EC RWK
Sbjct: 258 DLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 298
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 156/291 (53%), Gaps = 28/291 (9%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D LK L+ P+T +LL ST++G S+ ++K E+V + A L+ WK K++ G T+
Sbjct: 26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK-KLLDGPSTDK 84
Query: 93 NKRN-------GSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSM 145
+ S+ S + + + +S + + + A++ ++ R PS +D S+
Sbjct: 85 DSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSD----SV 140
Query: 146 RDKIRKDLEKAL---SRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
R K R+ L AL + AD+EE+ + +E +++++R + K
Sbjct: 141 RLKCREMLAAALRTGDDYVAIGADEEEL------------GSQIEEAIYQEIRNTDMKYK 188
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D KNP+LR+ VL G + P+ A MT EE+ASDE ++ + + + + +
Sbjct: 189 NRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREH 248
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD F C C K NC+Y Q+QTRSADEPMTT+V C EC RWK
Sbjct: 249 QMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 14/282 (4%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 28 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 87
Query: 93 NKRNGSKL-SVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRK 151
N+ G+ L + K +T+D + K +T I D++R+K R+
Sbjct: 88 NQGRGTPLPTSSSKDASRTTDLSCKKPD---PPRTPSTPRITTFPQVPITCDAVRNKCRE 144
Query: 152 DLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFN 211
L AL D + + V + +++ +E +F + + K + RS + N
Sbjct: 145 MLTLALQ------TDHDHVAVGVNC---EHLSSQIEECIFLDVGNTDMKYKNRVRSRISN 195
Query: 212 MSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT 271
+ D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++
Sbjct: 196 LKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQ 255
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
TD F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 256 TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 297
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 12/281 (4%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPC-EKVQNAASELLHIWKQKIVLGKETNG 92
D L+ L+ P+T LL ST+VG S+ L+K E++ A L+ WK+ + + +
Sbjct: 28 DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSR 87
Query: 93 NKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKD 152
++ G+ L K S + + +T I D++R+K R+
Sbjct: 88 DQGRGTPLPTSS--SKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITCDAVRNKCREM 145
Query: 153 LEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNM 212
L AL D + + V + +++ +E +F + + K + RS + N+
Sbjct: 146 LTLALQ------TDHDHVAVGVSC---EHLSSQIEECIFLDVGNTDMKYKNRVRSRISNL 196
Query: 213 SDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTT 272
D KNP LRR VL G +TP+++A MT EE+ASDE ++ + + + + + ++ T
Sbjct: 197 KDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQT 256
Query: 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
D F C+ C K NC+Y Q+QTRS+DEPMTTYV C EC RWK
Sbjct: 257 DLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWK 297
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 24/273 (8%)
Query: 45 TYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLS--- 101
T +LL T++G + L+ HP EKV A E++ WK + G+ S S
Sbjct: 39 TEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHA 98
Query: 102 -VDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRV 160
V + QKQ ++ SG T K ++ + M + + D +++ S +
Sbjct: 99 DVGSQAQKQVQKQSS--SGQRTFKSDNVNVNVTDDKIRNNCIGLMYNALVIDSDESSSLI 156
Query: 161 ASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDL 220
++A +EI +V AR + G + + RS+ N+ D+ NP L
Sbjct: 157 IAKA---KEIDAQVLARAAGKT---------------GSEYRNRMRSLYMNLKDKNNPKL 198
Query: 221 RRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGC 280
R VL E+TP+RL+TMT ELAS++RR+E+ +++ + +F + + +K TD F C C
Sbjct: 199 RASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKC 258
Query: 281 GKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+ SY+QMQTRSADEPMTT+ C C RWK
Sbjct: 259 KQKKVSYYQMQTRSADEPMTTFCECTVCGNRWK 291
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 144/293 (49%), Gaps = 23/293 (7%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHP-CEKVQNAASELLHIWKQKIVLGKETNG 92
D LK LQ + D+L T++G ++ L+K ++V A L+ WK+ + T
Sbjct: 29 DLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTP 88
Query: 93 NKRNG------------SKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQ 140
N + S + D ++ S ++K +T+S + +
Sbjct: 89 NNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGG 148
Query: 141 AKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVA 200
D++R K R+ L AL E + +P+++AA +E ++ + +
Sbjct: 149 MTDAVRIKCREMLATALK--IGEVPEG--------CGEPEEMAAELEDAIYSEFNNTDMK 198
Query: 201 EKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMF 260
K + RS + N+ D KNP LR + G VT ++LA MTPEE+ASDE ++ E+ + +
Sbjct: 199 YKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAIN 258
Query: 261 KCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TD KC+ C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 259 DAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL A + D + + ++A+ +E ++++L+ + +
Sbjct: 184 DSVRDKCVEMLSAALK--AEDNFKDYGV-------NCDKLASEIEDHIYQELKSTDMKYR 234
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++PE +A MT EE+ASDE R+ + + + +
Sbjct: 235 NRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREH 294
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD +CS C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 295 QMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 345
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 60/330 (18%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEK-VQNAASELLHIWKQ--------KI 84
D LK L ++ ++ LL +T++G ++ ++KH K V A L+ WKQ K
Sbjct: 28 DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQLLDSPATPKG 87
Query: 85 VLGKETNGNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKK--------ATASIRKPS 136
G+E K+ L + ++ +TS S K K+++ AT+S ++PS
Sbjct: 88 EKGEERVKAKKKEKGLDCSD-WKPETSLSPPRKKRVEEPKDRRDSVDSKSSATSSPKRPS 146
Query: 137 ----HADQAK-----------------------------DSMRDKIRKDLEKALSRVASE 163
++ ++K DS+RDK + L AL
Sbjct: 147 MERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAALK----- 201
Query: 164 AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRR 223
ADD+ V ++A+ +E ++++L+ + + + RS + N+ D +NP LRR
Sbjct: 202 -ADDDYKDYGVNC---DKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRN 257
Query: 224 VLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKS 283
VL G ++ +A MT EE+ASDE R+ + + + + ++ + TTD F+CS C K
Sbjct: 258 VLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKK 317
Query: 284 NCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 318 NCTYNQVQTRSADEPMTTFVLCNECGNRWK 347
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 9/171 (5%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202
DS+RDK + L AL ADD+ V ++A+ +E ++++L+ + +
Sbjct: 185 DSVRDKCVEMLSAALK------ADDDYKDYGVNC---DKMASEIEDHIYQELKSTDMKYR 235
Query: 203 RKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC 262
+ RS + N+ D +NP LRR VL G ++ +A MT EE+ASDE R+ + + + +
Sbjct: 236 NRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREH 295
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++ + TTD F+CS C K NC+Y+Q+QTRSADEPMTT+V C EC RWK
Sbjct: 296 QMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 346
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 150/302 (49%), Gaps = 25/302 (8%)
Query: 23 NRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEK-VQNAASELLHIWK 81
N V++C L L P++ +++ T +G + ++K + V A ++ WK
Sbjct: 19 NNGMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWK 78
Query: 82 QKIVLGKETNGNKRNGS------KLSVDE-KFQKQTSDSNAVKSGCSTAKE---KKATAS 131
+V GK + + K SV+E K +K+ ++ + S+ E + A+AS
Sbjct: 79 N-VVDGKSKSQDDGGAPPAKKHRKESVEEAKPEKKKIEAPYKRPEPSSRPEIVAQFASAS 137
Query: 132 IRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMF 191
P H + D R K + L AL D + T DP+++A +E ++
Sbjct: 138 F-PPKHLEN--DETRLKSAQLLLSAL-----RFGDMPQGT-----LDPEELAVQIEEKLY 184
Query: 192 EKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQEN 251
R + RS +FN+ D+KN LR VL G V E+ ATMT EE+AS E R+
Sbjct: 185 SVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMR 244
Query: 252 EEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311
++ + + + ++ ++ +D FKC CGK NC+Y Q+QTRS+DEPMTT+V C EC R
Sbjct: 245 DKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNR 304
Query: 312 WK 313
WK
Sbjct: 305 WK 306
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%)
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFM 259
A K ++R I N+ + NPDL+ ++ G++TPE LAT ++LA +Q+ EEI + +
Sbjct: 194 AYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNL 253
Query: 260 FKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+ + ++ TD+F C C + SY+Q+QTRSADEP+TT+ TC C RWK
Sbjct: 254 YNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 179 PKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMT 238
P+ +A +E M++ R + K K RS FN+ +KN LR +L +++ + +M
Sbjct: 183 PEDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNL--KKNDILRLSLLNRQISVAKFCSMD 240
Query: 239 PEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEP 298
+ASD+ ++E +++ + + + TTDQF+C C + C+Y Q+QTRSADEP
Sbjct: 241 IYSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSADEP 300
Query: 299 MTTYVTCA--ECNKRWK 313
TT+V C C RW+
Sbjct: 301 PTTFVKCCVKGCGNRWR 317
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 15/126 (11%)
Query: 130 ASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERV 189
AS KPS ADQ + S+R ++ L K L+ D + +V +VA +E+
Sbjct: 917 ASASKPS-ADQIRQSVRHSLKDILMKRLT--------DSNL--KVPEEKAAKVATKIEKE 965
Query: 190 MFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE--- 246
+F R K K+RS+MFN+ D KN L ++VL GEVTP+ L M+PEELAS E
Sbjct: 966 LFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAA 1025
Query: 247 -RRQEN 251
RR+EN
Sbjct: 1026 WRRREN 1031
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 129/328 (39%), Gaps = 60/328 (18%)
Query: 33 ADALKHLQAFPVTYDLLVSTQVGKSL-RHLKKHPCEKVQNAASELLHIWKQKIVLGKETN 91
+ L L+ VT + L T V +++ R LK P ++N A LL WK + KET+
Sbjct: 27 GNHLTELETIYVTKEHLQETDVVRAVYRVLKNCPSVALKNKAKCLLSKWK---AVYKETH 83
Query: 92 GNKRNGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAK--------- 142
RN KL F + ++ N+ S + E S S D AK
Sbjct: 84 SKARNSPKL-----FPVRGNEENSGPSHDPSQDETLGICSSNSLSSQDVAKLSEMIVPEN 138
Query: 143 -------------DSMRDKIRKDLEKALSRVAS---------EAADDEEITDRVKARDPK 180
D + K L + L + AA D+ KA +
Sbjct: 139 RAIQLKPKKEHFGDGGPESTGKRLSELLDPITPMRTKCIELLYAALTSSSADQPKADLWQ 198
Query: 181 QVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPE 240
A +E +F K RS + N+ + KN L++ +L G ++P A MT
Sbjct: 199 NFAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPKNSHLQQNLLSGTMSPREFAEMTVM 258
Query: 241 ELASDERRQENEEIKAKFMFKC----EVPEKKKGT-TDQFKCSGCGKSNCSY-------- 287
E+A+ E +Q ++A + C +P+ GT T++ KC C K NC
Sbjct: 259 EMANKELKQ----LRASYTESCIQEHYLPQVIDGTQTNKIKCRRCEKYNCKVTVIDRGTL 314
Query: 288 ---HQMQTRSADEPMTTYVTCAECNKRW 312
++ + DE M TYV C EC ++W
Sbjct: 315 FLPSWVRNSNPDEQMMTYVICNECGEQW 342
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 206 RSIMFNMSDEKN---PDLRRRVLIGEVTPERLATMTPEELASDE------RRQENEEIKA 256
++IMFN+ DE N +++ + + LA + PEEL D R+Q EE
Sbjct: 65 KNIMFNLKDENNHTIKKIKKLIDKNKYNAYNLAFLNPEELNKDNWIKIIARKQMTEE--- 121
Query: 257 KFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
+ T + C C ++ ++Q+QTRSADEPMTT+ C C K +K
Sbjct: 122 --------TLNQMATVEWKPCYACKNTSYHFYQLQTRSADEPMTTFYICKNCMKTYK 170
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 164 AADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRR 223
AA TD+ KA + A +E +F K RS + N+ + +N L++
Sbjct: 183 AALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQN 242
Query: 224 VLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKC----EVPEKKKGT-TDQFKCS 278
+L G +P A MT E+A+ E +Q ++A + C +P+ GT T++ KC
Sbjct: 243 LLSGTTSPREFAEMTVMEMANKELKQ----LRASYTESCIQEHYLPQVIDGTQTNKIKCR 298
Query: 279 GCGKSNCSY-----------HQMQTRSADEPMTTYVTCAECNKRW 312
C K NC ++ + DE M TYV C EC ++W
Sbjct: 299 RCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 343
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+++ D +++ GE+ PE + +MT EL +E EI + K V EK T+
Sbjct: 149 QQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRSQQK--VAEK---TSQL 203
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
+KC C + C+Y ++QTR+ DEP T Y TC +C +
Sbjct: 204 YKCPNCKQRMCTYREVQTRALDEPSTIYCTCKKCGHEF 241
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+++ D +++ GE+ PE+L MT EL +E EI + K V EK T+
Sbjct: 149 QQDNDALNKLISGELKPEQLVGMTFAELCPSAALKEKTEITLRSQQK--VAEK---TSQL 203
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
+KC C + C+Y ++QTR+ DEP T + TC +C +
Sbjct: 204 YKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+++ D +++ GE+ PE + +MT EL +E EI + K V EK T+
Sbjct: 149 QQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRSQQK--VAEK---TSQL 203
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
+KC C + C+Y ++QTR+ DEP T + TC +C +
Sbjct: 204 YKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+++ D +++ GE+ PE + +MT EL +E EI + K V EK T+
Sbjct: 149 QQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRSQQK--VAEK---TSQL 203
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
+KC C + C+Y ++QTR+ DEP T + TC +C +
Sbjct: 204 YKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 215 EKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQ 274
+++ D +++ GE+ PE + +MT EL +E EI + K V EK T+
Sbjct: 149 QQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRSQQK--VAEK---TSQL 203
Query: 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
+KC C + C+Y ++QTR+ DEP T + TC +C +
Sbjct: 204 YKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + +A +E+ MF +
Sbjct: 662 QPNSQIRQNIRRSLKEILWKRVNDS-DDLIMTENEVGK----IALHIEKEMFNLFQVTDN 716
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
K K+RSIMFN+ D KN L RVL E++ +L M PEEL S E
Sbjct: 717 RYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKE 763
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312
KC GCG Q QTRSADEPMT + C+EC KRW
Sbjct: 54 KCPGCGSRRVHALQRQTRSADEPMTLFAMCSECGKRW 90
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 182 VAASVERVMFE---KLRP-MGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATM 237
+A ++E+ +++ + P +G + K R++ FN+ D KN LR RV+ G+VTP+ L M
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAM 296
Query: 238 TPEELASDERRQENEEIKAKFM 259
+ EE+ + E ++ EE++A+ +
Sbjct: 297 SSEEMMNPELQKLAEEVRAEAI 318
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 140 QAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGV 199
Q +R IR+ L++ L + +++ DD +T+ + +A +E+ MF +
Sbjct: 665 QPNSQIRQNIRRSLKEILWKRVNDS-DDLIMTENEVGK----IALHIEKEMFNLFQVTDN 719
Query: 200 AEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
K K+RSIMFN+ D KN L RVL E++ +L + PEEL S E
Sbjct: 720 RYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKE 766
>sp|Q3US16|TEANC_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein OS=Mus musculus GN=Tceanc PE=2
SV=1
Length = 359
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 171 TDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVT 230
TD + + +A +E +F K RS + N+ + +N L++ L G ++
Sbjct: 199 TDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMS 258
Query: 231 PERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGT-TDQFKCSGCGKSNCSY-- 287
A M+ ++AS E +Q + + +P+ GT T++ KC C K NC
Sbjct: 259 AREFAEMSVLDMASQELKQLRASYTESSIQEHCLPQSVDGTWTNKIKCRRCDKYNCKVTV 318
Query: 288 ---------HQMQTRSADEPMTTYVTCAECNKRW 312
+Q + DE MT YV C EC ++W
Sbjct: 319 IARGTLFLPSWVQNSNPDEQMT-YVICNECGEQW 351
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 110 TSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMRDKIRKDLEKALSRVASEAADDEE 169
+SD +SG A+E + Q K S+ +R + +++ V E
Sbjct: 569 SSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRL--RE 626
Query: 170 ITDRVKARDPKQ-VAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGE 228
+ D V + + + +AA +E +++ + K K+RS++FN+ D +N DL +V+ G+
Sbjct: 627 LPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGD 686
Query: 229 VTPERLATMTPEELASDE--RRQENEE 253
VTP L M+ +LA E R ++ EE
Sbjct: 687 VTPYDLVRMSSMQLAPQELARWRDQEE 713
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 34 DALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI--------- 84
D+L+HL+ + D+L ST++GK++ L+KH +K++ A L+ WK+ +
Sbjct: 161 DSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKE 220
Query: 85 VLGKETNGNKRNGSKLSVDEKF 106
+ G E N S L +E F
Sbjct: 221 ITGAEGTPESANPSVLDEEEAF 242
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 280 CGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
CG + + Q+Q RSADEPMTT+ C C RWK
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 266 EKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
E K G T + KC CG +YH +Q RSADE T + TC C +++
Sbjct: 75 ELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFR 122
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKAR--------DPKQVAASVERVMF--- 191
D +++ +RK + KA V E+I ++ K + +A +E +MF
Sbjct: 211 DEIQNPVRKSVAKAWVSVF------EKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVL 264
Query: 192 -----EKLRPMGVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDE 246
L P + K R++ FN+ D+KNP R RVL E++ L ++ EE+A+ +
Sbjct: 265 SYTTDHSLTPNN-KYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPD 323
Query: 247 RRQENEEIK 255
+ EEI+
Sbjct: 324 LKNLAEEIR 332
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
++P+ T C CG + +QTRSADEP T + C +C K W+
Sbjct: 58 DMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWR 108
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTRSADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
T + C CG + +MQTR+ DEP T + C +C W+
Sbjct: 66 TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 107
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 280 CGKSNCS---YHQMQTRSADEPMTTYVTCAECNKRW 312
CGK +C+ + QTRS DEP T + +C+ C RW
Sbjct: 100 CGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRW 135
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 OS=Homo
sapiens GN=TCEB3B PE=1 SV=2
Length = 753
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
L+ L A P+T D+L T + K+++ L+KH + V + A +L WK+ +++ + T +
Sbjct: 31 LQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLVLVDRNTRPGPQ 88
Query: 96 NGSKLSVDEKFQKQTSDSNAVKSGCSTAKEKKATASIRKPSHADQAKDSMR 146
+ + + ++F + D + + ATA R PSH+ + + + R
Sbjct: 89 DPEESASRQRFGEALQDQEK-----AWGFPENATAP-RSPSHSPEHRRTAR 133
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 263 EVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAEC 308
E PE + D+ +CS CG +YH Q RSADE T + TC C
Sbjct: 71 EGPEFQGPVVDR-RCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 277 CSGCGKSNCSYHQMQTRSADEPMTTYVTC--AECNKRWK 313
C C + Q+QTR ADEPMTT+ C A+C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWR 107
>sp|A6NLF2|EA3L2_HUMAN RNA polymerase II transcription factor SIII subunit A3-like-2
OS=Homo sapiens GN=TCEB3CL2 PE=2 SV=1
Length = 546
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
L+ L A P+T D+L T + K+++ L+KH + V + A +L WK+ +++ + T + +
Sbjct: 31 LQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLVLVDRNTGPDPQ 88
Query: 96 NGSKLSVDEKF 106
+ + + ++F
Sbjct: 89 DPEESASRQRF 99
>sp|Q3SY89|EA3L1_HUMAN RNA polymerase II transcription factor SIII subunit A3-like-1
OS=Homo sapiens GN=TCEB3CL PE=2 SV=1
Length = 546
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
L+ L A P+T D+L T + K+++ L+KH + V + A +L WK+ +++ + T + +
Sbjct: 31 LQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLVLVDRNTGPDPQ 88
Query: 96 NGSKLSVDEKF 106
+ + + ++F
Sbjct: 89 DPEESASRQRF 99
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 OS=Mus musculus
GN=Tceb3 PE=1 SV=3
Length = 773
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 43 PVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKRNGSKLSV 102
P+T D+LV T VGK++ +KH E+V N A +L+ WK+ + + + +
Sbjct: 37 PITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVPVERNSEAE--------- 85
Query: 103 DEKFQKQTS 111
D+ F+K S
Sbjct: 86 DQDFEKNNS 94
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 OS=Rattus
norvegicus GN=Tceb3 PE=1 SV=1
Length = 773
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 43 PVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVL 86
P+T D+LV T VGK++ +KH E+V N A +L+ WK+ + +
Sbjct: 37 PITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVPV 78
>sp|Q8NG57|ELOA3_HUMAN RNA polymerase II transcription factor SIII subunit A3 OS=Homo
sapiens GN=TCEB3C PE=1 SV=2
Length = 546
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 36 LKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIVLGKETNGNKR 95
L+ L A P+T D+L T + K+++ L+KH + V + A +L WK+ +++ + T + +
Sbjct: 31 LQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLVLVDRNTGPDPQ 88
Query: 96 NGSKLSVDEKF 106
+ + + ++F
Sbjct: 89 DPEESASRQRF 99
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 CGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313
C + + Q+Q RSADEPM+T+ C +C +W+
Sbjct: 74 CDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWR 107
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 32 CADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKI 84
+ L++L+ +T+ L T +G+ + ++KHP V+ A +L+ WK+ +
Sbjct: 144 LVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETV 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,162,563
Number of Sequences: 539616
Number of extensions: 4207754
Number of successful extensions: 15063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 14766
Number of HSP's gapped (non-prelim): 462
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)