Query 035641
Match_columns 314
No_of_seqs 257 out of 1118
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 1.5E-66 5.2E-71 491.0 27.5 290 2-314 3-308 (309)
2 3po3_S Transcription elongatio 100.0 6.8E-53 2.3E-57 368.3 14.0 171 133-314 3-177 (178)
3 2lw4_A Transcription elongatio 100.0 1.6E-31 5.4E-36 216.8 2.8 107 138-253 5-111 (113)
4 3ndq_A Transcription elongatio 100.0 2.3E-29 7.7E-34 202.6 9.0 101 137-246 8-108 (108)
5 2dme_A PHD finger protein 3; P 99.9 1.2E-28 4.2E-33 201.8 3.6 108 141-254 8-115 (120)
6 1tfi_A Transcriptional elongat 99.8 7.4E-22 2.5E-26 137.1 4.9 46 269-314 4-49 (50)
7 1wjt_A Transcription elongatio 99.7 2E-18 6.8E-23 137.5 5.0 77 1-86 10-87 (103)
8 1qyp_A RNA polymerase II; tran 99.7 2.6E-18 9E-23 122.7 4.8 43 271-313 12-54 (57)
9 3h0g_I DNA-directed RNA polyme 99.7 3E-17 1E-21 133.0 5.2 46 268-313 66-111 (113)
10 1twf_I B12.6, DNA-directed RNA 99.7 5.2E-17 1.8E-21 133.3 5.2 45 269-313 67-111 (122)
11 3qt1_I DNA-directed RNA polyme 99.6 6.4E-17 2.2E-21 134.4 0.0 46 268-313 86-131 (133)
12 2xpp_A IWS1, ECU08_0440; trans 97.6 2.5E-05 8.6E-10 65.3 2.6 59 27-86 79-139 (145)
13 3nfq_A Transcription factor IW 97.4 5.4E-05 1.9E-09 64.8 2.3 59 27-86 94-154 (170)
14 2b4j_C PC4 and SFRS1 interacti 96.7 0.0035 1.2E-07 48.8 6.3 79 1-86 4-84 (98)
15 1z9e_A PC4 and SFRS1 interacti 96.2 0.0046 1.6E-07 50.2 4.4 79 1-86 4-84 (127)
16 2akl_A PHNA-like protein PA012 93.4 0.028 9.4E-07 45.7 1.7 30 273-313 26-55 (138)
17 1k81_A EIF-2-beta, probable tr 93.3 0.047 1.6E-06 34.5 2.3 31 276-313 2-32 (36)
18 1pft_A TFIIB, PFTFIIBN; N-term 87.6 0.35 1.2E-05 32.3 2.6 31 273-312 4-34 (50)
19 1qxf_A GR2, 30S ribosomal prot 87.5 0.31 1.1E-05 34.9 2.4 29 274-311 7-35 (66)
20 2fiy_A Protein FDHE homolog; F 87.3 0.39 1.3E-05 44.7 3.6 40 273-314 181-220 (309)
21 3j20_W 30S ribosomal protein S 85.8 0.44 1.5E-05 33.8 2.4 30 273-311 14-43 (63)
22 1vq8_Z 50S ribosomal protein L 85.6 1.2 4E-05 33.4 4.9 30 273-312 26-55 (83)
23 3iz6_X 40S ribosomal protein S 85.6 0.19 6.7E-06 37.8 0.5 30 273-311 35-64 (86)
24 2xzm_6 RPS27E; ribosome, trans 85.2 0.25 8.4E-06 36.8 0.9 30 273-311 31-60 (81)
25 1wii_A Hypothetical UPF0222 pr 85.2 0.75 2.6E-05 34.6 3.6 38 272-313 21-58 (85)
26 2e2z_A TIM15; protein import, 82.6 0.4 1.4E-05 37.2 1.1 36 273-311 12-47 (100)
27 3u5c_b RP61, YS20, 40S ribosom 82.2 0.23 7.9E-06 37.0 -0.3 30 273-311 33-62 (82)
28 2d74_B Translation initiation 76.4 0.73 2.5E-05 38.3 0.9 33 274-313 104-136 (148)
29 2fiy_A Protein FDHE homolog; F 74.2 2.1 7.3E-05 39.6 3.5 40 274-313 222-264 (309)
30 3j20_Y 30S ribosomal protein S 73.4 2.4 8.3E-05 28.5 2.8 31 272-312 17-47 (50)
31 2g2k_A EIF-5, eukaryotic trans 72.7 3 0.0001 35.3 3.8 34 274-312 96-129 (170)
32 2e9h_A EIF-5, eukaryotic trans 71.5 2.9 9.9E-05 35.0 3.4 34 274-312 103-136 (157)
33 1dl6_A Transcription factor II 69.1 2.3 7.9E-05 29.4 1.9 28 275-311 12-39 (58)
34 1twf_L ABC10-alpha, DNA-direct 68.9 3 0.0001 30.1 2.6 30 271-311 25-54 (70)
35 3ga8_A HTH-type transcriptiona 68.4 2.3 8E-05 30.9 1.9 38 275-312 3-46 (78)
36 1nee_A EIF-2-beta, probable tr 67.6 1.7 5.9E-05 35.6 1.1 31 274-311 102-132 (138)
37 3h0g_I DNA-directed RNA polyme 62.7 4.2 0.00014 31.9 2.5 34 274-313 4-37 (113)
38 3qt1_I DNA-directed RNA polyme 62.6 3.4 0.00012 33.6 2.0 36 272-313 22-57 (133)
39 1gnf_A Transcription factor GA 62.3 1.1 3.8E-05 29.7 -0.8 33 274-313 4-36 (46)
40 3h0g_L DNA-directed RNA polyme 61.3 4.4 0.00015 28.7 2.1 29 272-311 19-47 (63)
41 3cw2_K Translation initiation 61.2 1.1 3.7E-05 36.8 -1.2 31 274-311 103-133 (139)
42 1x0t_A Ribonuclease P protein 59.0 8.4 0.00029 30.5 3.7 36 274-313 65-105 (120)
43 2vut_I AREA, nitrogen regulato 57.9 1.2 4.3E-05 29.0 -1.1 31 276-313 3-33 (43)
44 2jox_A Churchill protein; zinc 57.5 7.2 0.00025 30.1 2.9 38 274-311 26-66 (106)
45 2k3r_A Ribonuclease P protein 56.1 8.8 0.0003 30.6 3.4 36 274-313 60-100 (123)
46 2k4x_A 30S ribosomal protein S 55.8 10 0.00035 25.8 3.2 32 271-312 15-46 (55)
47 1ffk_W Ribosomal protein L37AE 53.8 22 0.00076 25.7 4.9 31 272-312 25-55 (73)
48 4esj_A Type-2 restriction enzy 52.9 6.6 0.00022 35.0 2.3 33 274-312 34-66 (257)
49 2gmg_A Hypothetical protein PF 50.9 13 0.00044 28.9 3.4 71 226-312 22-94 (105)
50 3cc2_Z 50S ribosomal protein L 50.6 11 0.00037 29.9 3.0 30 273-312 59-88 (116)
51 3j21_i 50S ribosomal protein L 49.2 20 0.00067 26.7 4.0 29 274-312 35-63 (83)
52 2js4_A UPF0434 protein BB2007; 47.8 15 0.00051 26.3 3.1 30 273-312 7-36 (70)
53 1dxg_A Desulforedoxin; non-hem 47.7 7.6 0.00026 24.0 1.4 12 300-311 4-15 (36)
54 4gat_A Nitrogen regulatory pro 47.2 2.7 9.4E-05 30.0 -0.9 35 272-313 7-41 (66)
55 2pk7_A Uncharacterized protein 46.3 12 0.0004 26.8 2.4 30 273-312 7-36 (69)
56 3dwd_A ADP-ribosylation factor 46.0 12 0.00041 30.8 2.7 29 273-309 37-65 (147)
57 4ayb_P DNA-directed RNA polyme 45.9 6 0.00021 26.3 0.7 10 302-311 23-32 (48)
58 1vd4_A Transcription initiatio 45.7 3.8 0.00013 27.6 -0.3 38 273-313 13-50 (62)
59 1ltl_A DNA replication initiat 45.6 12 0.00042 33.6 3.0 34 271-311 131-165 (279)
60 3dfx_A Trans-acting T-cell-spe 45.5 2.7 9.1E-05 29.8 -1.1 34 273-313 6-39 (63)
61 3jyw_9 60S ribosomal protein L 44.0 10 0.00035 27.5 1.7 30 273-312 25-54 (72)
62 2adr_A ADR1; transcription reg 43.2 2.6 8.8E-05 27.6 -1.5 35 275-313 3-41 (60)
63 2qkd_A Zinc finger protein ZPR 42.9 16 0.00055 35.0 3.5 39 273-312 219-259 (404)
64 2hf1_A Tetraacyldisaccharide-1 41.5 14 0.00049 26.3 2.2 30 273-312 7-36 (68)
65 2jr6_A UPF0434 protein NMA0874 40.8 16 0.00055 26.0 2.4 30 273-312 7-36 (68)
66 2kvh_A Zinc finger and BTB dom 40.4 11 0.00037 19.8 1.2 11 303-313 4-14 (27)
67 2kae_A GATA-type transcription 39.9 3.5 0.00012 29.8 -1.3 33 273-313 7-41 (71)
68 2gut_A ARC/mediator, positive 39.7 44 0.0015 24.4 4.6 45 142-202 11-55 (77)
69 3j21_g 50S ribosomal protein L 39.7 5.1 0.00017 27.1 -0.4 25 273-311 13-37 (51)
70 3izc_m 60S ribosomal protein R 39.4 12 0.00041 28.4 1.6 30 273-312 35-64 (92)
71 1bbo_A Human enhancer-binding 39.2 2.3 8E-05 27.5 -2.2 11 303-313 30-40 (57)
72 3iz5_m 60S ribosomal protein L 39.0 18 0.00061 27.4 2.5 29 274-312 36-64 (92)
73 2k5r_A Uncharacterized protein 38.4 17 0.0006 27.7 2.4 40 273-313 7-64 (97)
74 2kvf_A Zinc finger and BTB dom 36.9 14 0.00047 19.5 1.2 10 303-312 4-13 (28)
75 1kdx_A CBP; complex (transcrip 36.3 79 0.0027 23.2 5.6 54 142-201 11-64 (81)
76 4gzn_C ZFP-57, zinc finger pro 36.1 5.9 0.0002 27.1 -0.6 36 274-313 4-43 (60)
77 2cot_A Zinc finger protein 435 35.4 5.1 0.00018 27.7 -1.0 40 272-313 16-57 (77)
78 4a17_Y RPL37A, 60S ribosomal p 35.2 22 0.00075 27.5 2.5 30 273-312 35-64 (103)
79 2kvg_A Zinc finger and BTB dom 35.0 12 0.00043 19.8 0.8 10 303-312 4-13 (27)
80 3uk3_C Zinc finger protein 217 34.9 6.9 0.00024 25.0 -0.4 36 274-313 4-43 (57)
81 4dra_E Centromere protein X; D 34.2 82 0.0028 23.3 5.5 37 3-39 42-80 (84)
82 2i5o_A DNA polymerase ETA; zin 34.1 16 0.00055 23.2 1.3 13 271-283 6-18 (39)
83 1x5w_A Zinc finger protein 64, 34.1 3.4 0.00012 28.1 -2.1 37 273-313 8-48 (70)
84 2lce_A B-cell lymphoma 6 prote 33.9 3.3 0.00011 28.5 -2.2 38 272-313 15-56 (74)
85 1x6e_A Zinc finger protein 24; 33.9 2.9 0.0001 28.7 -2.5 38 272-313 12-53 (72)
86 2jny_A Uncharacterized BCR; st 33.8 35 0.0012 24.2 3.2 30 273-312 9-38 (67)
87 3v2d_5 50S ribosomal protein L 33.7 11 0.00036 26.3 0.4 12 271-282 27-38 (60)
88 1rik_A E6APC1 peptide; E6-bind 33.6 16 0.00055 19.2 1.2 10 303-312 3-12 (29)
89 2m0d_A Zinc finger and BTB dom 33.2 17 0.00057 19.2 1.2 10 303-312 4-13 (30)
90 2owa_A Arfgap-like finger doma 33.1 31 0.0011 27.9 3.3 30 272-309 34-63 (138)
91 2kpi_A Uncharacterized protein 32.9 25 0.00087 23.9 2.3 29 273-313 9-39 (56)
92 2zjr_Z 50S ribosomal protein L 32.8 12 0.0004 26.1 0.6 26 270-310 26-51 (60)
93 2l6l_A DNAJ homolog subfamily 32.4 12 0.0004 30.5 0.6 34 272-312 110-143 (155)
94 2lvu_A Zinc finger and BTB dom 38.1 9.8 0.00033 19.8 0.0 10 303-312 3-12 (26)
95 3pwf_A Rubrerythrin; non heme 31.5 55 0.0019 27.2 4.7 27 272-311 136-162 (170)
96 2lv2_A Insulinoma-associated p 31.5 16 0.00054 26.7 1.1 38 272-313 26-67 (85)
97 1znf_A 31ST zinc finger from X 31.0 13 0.00046 19.3 0.5 10 303-312 2-11 (27)
98 2m0f_A Zinc finger and BTB dom 30.2 20 0.00067 18.7 1.2 10 303-312 3-12 (29)
99 3nct_A Protein PSIB; DNA bindi 29.5 44 0.0015 27.1 3.5 72 228-306 4-79 (144)
100 1srk_A Zinc finger protein ZFP 29.4 21 0.00071 20.0 1.2 11 303-313 8-18 (35)
101 1x3z_A Peptide: N-glycanase; h 29.1 27 0.00091 32.6 2.4 41 272-312 117-165 (335)
102 2elq_A Zinc finger protein 406 29.0 21 0.00071 20.2 1.2 11 303-313 10-20 (36)
103 2hgo_A CASSIICOLIN; toxin, dis 28.9 15 0.00053 20.8 0.5 9 306-314 16-24 (27)
104 1ard_A Yeast transcription fac 28.6 15 0.00053 19.3 0.5 10 303-312 3-12 (29)
105 3b0b_C CENP-X, centromere prot 28.5 96 0.0033 22.7 5.0 37 3-39 38-76 (81)
106 2elv_A Zinc finger protein 406 28.3 22 0.00076 20.0 1.2 11 303-313 10-20 (36)
107 2eps_A POZ-, at HOOK-, and zin 28.3 4.1 0.00014 26.4 -2.4 40 273-313 11-52 (54)
108 2elx_A Zinc finger protein 406 28.3 22 0.00077 19.7 1.2 10 303-312 8-17 (35)
109 2jr7_A DPH3 homolog; DESR1, CS 27.6 14 0.00049 27.8 0.3 32 273-310 22-53 (89)
110 2elp_A Zinc finger protein 406 27.6 23 0.00078 20.1 1.2 11 303-313 10-20 (37)
111 6rxn_A Rubredoxin; electron tr 27.5 24 0.00082 23.1 1.3 17 272-288 28-44 (46)
112 1gh9_A 8.3 kDa protein (gene M 27.5 26 0.00089 25.2 1.6 27 275-313 5-31 (71)
113 1yuz_A Nigerythrin; rubrythrin 27.4 68 0.0023 27.4 4.6 28 271-311 168-195 (202)
114 2csh_A Zinc finger protein 297 27.1 9.5 0.00032 28.1 -0.8 38 274-313 37-76 (110)
115 2ctt_A DNAJ homolog subfamily 26.6 74 0.0025 23.8 4.3 30 274-309 45-74 (104)
116 2elm_A Zinc finger protein 406 26.6 22 0.00076 20.4 1.0 10 303-312 10-19 (37)
117 2zkr_2 60S ribosomal protein L 26.4 20 0.00069 27.4 0.9 27 272-311 14-40 (97)
118 2els_A Zinc finger protein 406 26.1 25 0.00087 19.8 1.2 10 303-312 10-19 (36)
119 2ct7_A Ring finger protein 31; 25.9 31 0.001 25.2 1.9 10 303-312 44-53 (86)
120 2m0e_A Zinc finger and BTB dom 25.9 18 0.00061 18.8 0.4 10 303-312 3-12 (29)
121 3e9v_A Protein BTG2; B-cell tr 25.8 58 0.002 25.7 3.5 54 180-235 29-86 (120)
122 2elt_A Zinc finger protein 406 25.8 26 0.00088 19.6 1.2 10 303-312 10-19 (36)
123 4rxn_A Rubredoxin; electron tr 25.7 27 0.00091 23.7 1.3 19 272-290 34-52 (54)
124 1klr_A Zinc finger Y-chromosom 25.6 17 0.00059 19.1 0.3 10 303-312 3-12 (30)
125 1paa_A Yeast transcription fac 25.3 17 0.00058 19.3 0.2 10 303-312 3-12 (30)
126 2kwq_A Protein MCM10 homolog; 24.7 24 0.00082 26.7 1.0 12 275-287 49-60 (92)
127 2k0n_A Mediator of RNA polymer 24.6 1.7E+02 0.0057 21.4 5.4 65 143-213 9-73 (85)
128 3mhs_E SAGA-associated factor 24.6 23 0.00079 27.0 0.9 11 300-310 73-83 (96)
129 1wge_A Hypothetical protein 26 24.5 25 0.00086 26.1 1.1 32 273-310 29-60 (83)
130 2apo_B Ribosome biogenesis pro 24.3 19 0.00066 25.1 0.4 8 274-281 6-13 (60)
131 3iuf_A Zinc finger protein UBI 24.1 28 0.00096 21.6 1.2 11 303-313 8-18 (48)
132 1yk4_A Rubredoxin, RD; electro 24.1 32 0.0011 23.1 1.5 18 272-289 33-50 (52)
133 2lo3_A SAGA-associated factor 24.1 37 0.0013 21.9 1.7 16 296-311 11-26 (44)
134 2elr_A Zinc finger protein 406 24.0 21 0.00071 20.1 0.5 10 303-312 10-19 (36)
135 3a43_A HYPD, hydrogenase nicke 23.5 25 0.00085 28.4 1.0 10 273-282 69-78 (139)
136 1p7a_A BF3, BKLF, kruppel-like 23.4 22 0.00074 20.2 0.5 10 303-312 12-21 (37)
137 4gl2_A Interferon-induced heli 22.7 65 0.0022 31.9 4.1 12 300-312 639-650 (699)
138 1njq_A Superman protein; zinc- 22.6 32 0.0011 19.8 1.2 10 303-312 7-16 (39)
139 2dmi_A Teashirt homolog 3; zin 22.4 26 0.00088 25.8 0.9 11 303-313 81-91 (115)
140 2v3b_B Rubredoxin 2, rubredoxi 22.3 33 0.0011 23.2 1.3 19 272-290 34-52 (55)
141 2dmd_A Zinc finger protein 64, 22.1 11 0.00038 26.8 -1.3 37 273-313 35-75 (96)
142 2lvt_A Zinc finger and BTB dom 27.6 19 0.00065 19.1 0.0 10 303-312 3-12 (29)
143 2lvr_A Zinc finger and BTB dom 27.4 19 0.00066 19.0 0.0 10 303-312 4-13 (30)
144 2xzf_A Formamidopyrimidine-DNA 21.3 64 0.0022 28.8 3.4 28 275-310 243-270 (271)
145 2jsp_A Transcriptional regulat 21.0 27 0.00093 26.1 0.7 13 301-313 20-32 (87)
146 1fv5_A First zinc finger of U- 20.9 24 0.00082 21.4 0.3 11 303-313 9-19 (36)
147 2epv_A Zinc finger protein 268 20.9 37 0.0013 20.2 1.2 10 303-312 13-22 (44)
148 2kdx_A HYPA, hydrogenase/ureas 20.8 38 0.0013 26.3 1.6 14 274-287 89-103 (119)
149 2elo_A Zinc finger protein 406 20.4 25 0.00085 19.9 0.3 10 303-312 10-19 (37)
150 2ct1_A Transcriptional repress 20.3 9.6 0.00033 26.2 -1.9 39 273-313 14-56 (77)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=1.5e-66 Score=491.03 Aligned_cols=290 Identities=25% Similarity=0.396 Sum_probs=228.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHh-cCCCCCHHhhhcCcceeecccccCCCCHHHHHHHHHHHHHH
Q 035641 2 EKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHL-QAFPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIW 80 (314)
Q Consensus 2 ~~~~~el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L-~~~~~t~~~L~~T~iG~~V~~Lrkh~~~~i~~~Ak~Li~~W 80 (314)
|+|++++++...| .. .+++.++++|++| +.++||+++|++|+||++||+||||++++|+.+|+.||++|
T Consensus 3 ~~el~~~~~~L~k---~~-------~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~W 72 (309)
T 1pqv_S 3 SKEVLVHVKNLEK---NK-------SNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSW 72 (309)
T ss_pred HHHHHHHHHHHhc---cC-------CCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566666666554 11 3678999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCCCC-----CCCCCCcccccccC-CCC--Cc---cccCCCCcccccccCCCCCCCCCCC--CCCcHHHH
Q 035641 81 KQKIVLGKETNGNKR-----NGSKLSVDEKFQKQ-TSD--SN---AVKSGCSTAKEKKATASIRKPSHAD--QAKDSMRD 147 (314)
Q Consensus 81 K~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~-~~s--s~---s~k~~~~~~~~~~~~~~~~~~~~~~--~~~d~~R~ 147 (314)
|+ +|. .+..++.. .+.+.....+..+. .++ ++ +.....+....+.+.+++...++++ .++|++|+
T Consensus 73 K~-~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~R~ 150 (309)
T 1pqv_S 73 KD-AIN-KNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRD 150 (309)
T ss_pred HH-HHH-HhccCCcccccccccccccccCCCCCCCCcCCCCCCcccccccccCCCCCCCCCCCCCCCCCCcCcCChHHHH
Confidence 99 987 43332211 00000000000000 000 00 0000000111122333444445553 78899999
Q ss_pred HHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChh--hHhHHHhHHhhcCCCCChhhhhhhh
Q 035641 148 KIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVA--EKRKHRSIMFNMSDEKNPDLRRRVL 225 (314)
Q Consensus 148 k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~--yk~k~Rsl~~NLkd~~Np~Lr~~vl 225 (314)
+|+++|+++|..+..+.+. ++..+|.+||.+||..|++.+.. |++++|||+|||||++||.||++||
T Consensus 151 k~r~~L~~aL~~~~~~~~~-----------~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl 219 (309)
T 1pqv_S 151 QVLKALYDVLAKESEHPPQ-----------SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIA 219 (309)
T ss_pred HHHHHHHHHHhcCCCccch-----------hHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHH
Confidence 9999999999876433221 45689999999999999887777 9999999999999999999999999
Q ss_pred cCCCChhhhhcCChhhcCcHHHHHHHHHHHHhhhhhhccccccCCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEc
Q 035641 226 IGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTC 305 (314)
Q Consensus 226 ~G~i~p~~lv~Ms~eEmas~e~k~~~~~~~~~~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C 305 (314)
+|+|+|++||.|+++||||+|++++++++.+++|++++++..+.++++.+.||+||+++++|||+|+||||||||+||+|
T Consensus 220 ~g~i~p~~lv~Ms~eElasde~k~~~~~~~~e~l~~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C 299 (309)
T 1pqv_S 220 NGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC 299 (309)
T ss_pred cCCCCHHHHhcCCHHHhCCHHHHHHHHHHHHHHHHHhhhccccccCcccccCCCCCCCeeEEEEeecccCCCCCcEEEEe
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCCCcccC
Q 035641 306 AECNKRWKC 314 (314)
Q Consensus 306 ~~C~~~w~~ 314 (314)
++|||+|+|
T Consensus 300 ~~Cg~~w~f 308 (309)
T 1pqv_S 300 EACGNRWKF 308 (309)
T ss_pred CCCCCceec
Confidence 999999998
No 2
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=6.8e-53 Score=368.29 Aligned_cols=171 Identities=31% Similarity=0.505 Sum_probs=150.9
Q ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcC-CCh-hhHhHHHhH
Q 035641 133 RKPSHA--DQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRP-MGV-AEKRKHRSI 208 (314)
Q Consensus 133 ~~~~~~--~~~~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~-~~~-~yk~k~Rsl 208 (314)
.++++| +.++|++|++|+++|++||..+..+.+. ++..+|.+||.+||..|++ .+. .|++++|||
T Consensus 3 ~~~d~v~~~~~~d~vRdk~~~lL~~aL~~~~~~~~~-----------~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl 71 (178)
T 3po3_S 3 SKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ-----------SILHTAKAIESEMNKVNNCDTNEAAYKARYRII 71 (178)
T ss_dssp ------------CHHHHHHHHHHHHHTTSSSSCSTT-----------HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHH
T ss_pred ccCCCcCcCcCCChHHHHHHHHHHHHHhcCCCCchh-----------hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHH
Confidence 345666 6899999999999999999987654332 2458999999999999987 344 799999999
Q ss_pred HhhcCCCCChhhhhhhhcCCCChhhhhcCChhhcCcHHHHHHHHHHHHhhhhhhccccccCCCccceecCCCCCCceEEE
Q 035641 209 MFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYH 288 (314)
Q Consensus 209 ~~NLkd~~Np~Lr~~vl~G~i~p~~lv~Ms~eEmas~e~k~~~~~~~~~~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~ 288 (314)
+|||||++||+|+.+|++|+|+|+.||.|+++||||+|++++++++++++|++++.+..+.++|+.++||+||+++++||
T Consensus 72 ~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~e~l~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~ 151 (178)
T 3po3_S 72 YSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYY 151 (178)
T ss_dssp HHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHHHHHHHTBCCCCCCCCBSSSCCSSSCCSCEECC
T ss_pred HHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHHHHHHHhhhccccCCCcCCcCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred eeeccCCCCCCeEEEEcCCCCCcccC
Q 035641 289 QMQTRSADEPMTTYVTCAECNKRWKC 314 (314)
Q Consensus 289 q~q~rsade~mt~f~~C~~C~~~w~~ 314 (314)
|+|+||||||||+||+|++|||+|+|
T Consensus 152 q~Q~rsaDE~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 152 QLQTRSAAAPLTTFCTCEACGNRWKF 177 (178)
T ss_dssp CCCCSCTTSCCCCCEEETTTCCEECC
T ss_pred EeecccCCCCCcEEEEcCCCCCeecc
Confidence 99999999999999999999999997
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=1.6e-31 Score=216.76 Aligned_cols=107 Identities=35% Similarity=0.520 Sum_probs=95.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhhHhHHHhHHhhcCCCCC
Q 035641 138 ADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKN 217 (314)
Q Consensus 138 ~~~~~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~yk~k~Rsl~~NLkd~~N 217 (314)
+|.++|++|++|+++|++||..+..+ . ....++..+|.+||.++|..|+.+++.|++|+|||+|||||++|
T Consensus 5 ~p~t~D~vRdk~~e~L~~aL~~~~~~------~---~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~N 75 (113)
T 2lw4_A 5 VPVTCDAVRNKCREMLTAALQTDHDH------V---AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 75 (113)
T ss_dssp SCCCCSTTHHHHHHHHHHHHHSSTHH------H---HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSS
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCc------c---cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCC
Confidence 46789999999999999999865321 1 12356789999999999999999889999999999999999999
Q ss_pred hhhhhhhhcCCCChhhhhcCChhhcCcHHHHHHHHH
Q 035641 218 PDLRRRVLIGEVTPERLATMTPEELASDERRQENEE 253 (314)
Q Consensus 218 p~Lr~~vl~G~i~p~~lv~Ms~eEmas~e~k~~~~~ 253 (314)
|+||.+|++|+|+|++||.|+++||||+|++++|++
T Consensus 76 p~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~ 111 (113)
T 2lw4_A 76 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKA 111 (113)
T ss_dssp SHHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSS
T ss_pred HHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999877654
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=202.62 Aligned_cols=101 Identities=35% Similarity=0.525 Sum_probs=86.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhhHhHHHhHHhhcCCCC
Q 035641 137 HADQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEK 216 (314)
Q Consensus 137 ~~~~~~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~yk~k~Rsl~~NLkd~~ 216 (314)
+.+.++|++|++|+++|++||..+..+ .. ...++..+|.+||.+||..|+.++..|++|+|||+|||||++
T Consensus 8 ~~~~t~d~vR~k~~~lL~~aL~~~~d~-------~~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~k 78 (108)
T 3ndq_A 8 RAPSTSDSVRLKCREMLAAALRTGDDY-------IA--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAK 78 (108)
T ss_dssp CCCCCCCHHHHHHHHHHHHHTTGGGHH-------HH--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCChHHHHHHHHHHHHHHcCCCC-------Cc--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC
Confidence 346789999999999999999986421 11 135678999999999999999888899999999999999999
Q ss_pred ChhhhhhhhcCCCChhhhhcCChhhcCcHH
Q 035641 217 NPDLRRRVLIGEVTPERLATMTPEELASDE 246 (314)
Q Consensus 217 Np~Lr~~vl~G~i~p~~lv~Ms~eEmas~e 246 (314)
||+||++|++|+|+|++||.|+++||||+|
T Consensus 79 Np~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 79 NPNLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp CHHHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred CHHHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 999999999999999999999999999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.2e-28 Score=201.85 Aligned_cols=108 Identities=34% Similarity=0.509 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhhHhHHHhHHhhcCCCCChhh
Q 035641 141 AKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMSDEKNPDL 220 (314)
Q Consensus 141 ~~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~yk~k~Rsl~~NLkd~~Np~L 220 (314)
++|++|++|+++|+++|.....+.+.. . ..+++..+|.+||.+||..|+.++..|++|+|||+|||||++||+|
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~--~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~L 81 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLK--V----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNIL 81 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCC--C----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccc--c----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHH
Confidence 468999999999999999876543221 0 1123568999999999999998888999999999999999999999
Q ss_pred hhhhhcCCCChhhhhcCChhhcCcHHHHHHHHHH
Q 035641 221 RRRVLIGEVTPERLATMTPEELASDERRQENEEI 254 (314)
Q Consensus 221 r~~vl~G~i~p~~lv~Ms~eEmas~e~k~~~~~~ 254 (314)
|++|++|+|+|++||.|+++||||+|++++++++
T Consensus 82 r~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~ 115 (120)
T 2dme_A 82 FKKVLKGEVTPDHLIRMSPEELASKELAAWRRRS 115 (120)
T ss_dssp HHHHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTC
T ss_pred HHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999877543
No 6
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.84 E-value=7.4e-22 Score=137.10 Aligned_cols=46 Identities=61% Similarity=1.162 Sum_probs=43.5
Q ss_pred CCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcccC
Q 035641 269 KGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWKC 314 (314)
Q Consensus 269 ~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 314 (314)
.+.++.+.||+||+++++|||+|+||||||||+||+|++|||+|+|
T Consensus 4 ~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC
T ss_pred CceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEe
Confidence 4567889999999999999999999999999999999999999997
No 7
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.73 E-value=2e-18 Score=137.45 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcCCCCCHHhhhcCcceeecccccCC-CCHHHHHHHHHHHHH
Q 035641 1 MEKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKH-PCEKVQNAASELLHI 79 (314)
Q Consensus 1 ~~~~~~el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~t~~~L~~T~iG~~V~~Lrkh-~~~~i~~~Ak~Li~~ 79 (314)
||.|++++++...|+++.. +.+.++++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||++
T Consensus 10 ~e~ev~~i~k~L~k~~~~~--------~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~ 81 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSRK--------KTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKN 81 (103)
T ss_dssp SHHHHHHHHHHHHHHHHTT--------CCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 4778888888877765522 4578999999999999999999999999999999998 899999999999999
Q ss_pred HHHhhhc
Q 035641 80 WKQKIVL 86 (314)
Q Consensus 80 WK~~~v~ 86 (314)
||+ +|.
T Consensus 82 WK~-~v~ 87 (103)
T 1wjt_A 82 WKR-LLD 87 (103)
T ss_dssp HHH-HTC
T ss_pred HHH-HHH
Confidence 999 997
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.72 E-value=2.6e-18 Score=122.66 Aligned_cols=43 Identities=35% Similarity=0.917 Sum_probs=40.6
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+++.++||+||+.+++|+|+|+||||||||+||+|.+|||+|+
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred CceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 3457899999999999999999999999999999999999997
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.67 E-value=3e-17 Score=133.03 Aligned_cols=46 Identities=20% Similarity=0.439 Sum_probs=42.1
Q ss_pred cCCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 268 KKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 268 ~~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+..+++.+.||+||+++++|||+|+||||||||+||+|.+|||+|+
T Consensus 66 ~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 66 PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred ccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 3345556999999999999999999999999999999999999997
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.66 E-value=5.2e-17 Score=133.32 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=41.7
Q ss_pred CCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 269 KGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 269 ~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..+++.+.||+||+++++|||+|+||||||||+||+|++|||+|+
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred cccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 344557999999999999999999999999999999999999997
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.4e-17 Score=134.37 Aligned_cols=46 Identities=39% Similarity=0.808 Sum_probs=0.0
Q ss_pred cCCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 268 KKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 268 ~~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+..+++.+.||+||+++++|||+|+||||||||+||+|++|||+|+
T Consensus 86 ptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 86 PTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp ----------------------------------------------
T ss_pred ccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 3445567999999999999999999999999999999999999997
No 12
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.59 E-value=2.5e-05 Score=65.35 Aligned_cols=59 Identities=24% Similarity=0.444 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHhcCCCCCHHhhhcCcceeecccccCCC--CHHHHHHHHHHHHHHHHhhhc
Q 035641 27 PEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHP--CEKVQNAASELLHIWKQKIVL 86 (314)
Q Consensus 27 ~~~~~~~~~L~~L~~~~~t~~~L~~T~iG~~V~~Lrkh~--~~~i~~~Ak~Li~~WK~~~v~ 86 (314)
|...---.+|+.|..+||+.+.|..++||++|..|.+|+ .++++.+|..||.+|.+ .+.
T Consensus 79 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsR-pi~ 139 (145)
T 2xpp_A 79 PNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTN-EVF 139 (145)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-HHT
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHH-HHh
Confidence 556666678888889999999999999999999999997 68899999999999999 665
No 13
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.39 E-value=5.4e-05 Score=64.78 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHhcCCCCCHHhhhcCcceeecccccCCC--CHHHHHHHHHHHHHHHHhhhc
Q 035641 27 PEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHP--CEKVQNAASELLHIWKQKIVL 86 (314)
Q Consensus 27 ~~~~~~~~~L~~L~~~~~t~~~L~~T~iG~~V~~Lrkh~--~~~i~~~Ak~Li~~WK~~~v~ 86 (314)
|...-=-.+|+-|..+||+.+.|..++||++|..|.+|+ .++++.+|..||..|-. .+.
T Consensus 94 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsR-pI~ 154 (170)
T 3nfq_A 94 PSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTR-PII 154 (170)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTC-CCC
T ss_pred CcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHH-HHh
Confidence 555555677888888999999999999999999999997 68899999999999998 654
No 14
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.68 E-value=0.0035 Score=48.78 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcCCCCCHHhhh-cCcceeecccccCCC-CHHHHHHHHHHHH
Q 035641 1 MEKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLV-STQVGKSLRHLKKHP-CEKVQNAASELLH 78 (314)
Q Consensus 1 ~~~~~~el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~t~~~L~-~T~iG~~V~~Lrkh~-~~~i~~~Ak~Li~ 78 (314)
||+.|++|...-+-+-+. +. +++.+|+++|..|.++++|.-+|+ .+.+--++.+||+.. +..|.+.|..|+.
T Consensus 4 ~E~~l~~L~~~ik~~L~~-----~~-~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~ 77 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNSLKI-----DN-LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYN 77 (98)
T ss_dssp HHHHHHHHHHHHHHHTCT-----TS-CCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-----CC-CCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 578888887665333221 23 699999999999999999987665 455778889999865 8999999999999
Q ss_pred HHHHhhhc
Q 035641 79 IWKQKIVL 86 (314)
Q Consensus 79 ~WK~~~v~ 86 (314)
+.|. ++.
T Consensus 78 kfK~-~f~ 84 (98)
T 2b4j_C 78 KFKN-MFL 84 (98)
T ss_dssp HHHH-C--
T ss_pred HHHH-HHh
Confidence 9999 875
No 15
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=96.19 E-value=0.0046 Score=50.19 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcCCCCCHHhhh-cCcceeecccccCCC-CHHHHHHHHHHHH
Q 035641 1 MEKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLV-STQVGKSLRHLKKHP-CEKVQNAASELLH 78 (314)
Q Consensus 1 ~~~~~~el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~t~~~L~-~T~iG~~V~~Lrkh~-~~~i~~~Ak~Li~ 78 (314)
||+.|++|...-+-+-+. +. +++.+|+++|..|.++++|.-+|+ .+.|--++.+||+.. +..|...|..|+.
T Consensus 4 ~E~~L~~L~~~Ik~~L~v-----~~-~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~ 77 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNSLKI-----DN-LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYN 77 (127)
T ss_dssp HHHHHHHHHHHHHHHTCG-----GG-CCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-----CC-CCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 578888887666433322 22 699999999999999999987665 555888889999874 7889999999999
Q ss_pred HHHHhhhc
Q 035641 79 IWKQKIVL 86 (314)
Q Consensus 79 ~WK~~~v~ 86 (314)
+.|. ++.
T Consensus 78 kFK~-lf~ 84 (127)
T 1z9e_A 78 KFKN-MFL 84 (127)
T ss_dssp HHHH-HHH
T ss_pred HHHH-HHh
Confidence 9999 885
No 16
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=93.41 E-value=0.028 Score=45.67 Aligned_cols=30 Identities=23% Similarity=0.650 Sum_probs=22.4
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+.-.||+|+...++- | -..|+|..|+|.|.
T Consensus 26 ~lP~CP~C~seytYe--------D---g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYE--------D---GALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEE--------C---SSSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEe--------c---CCeEECCccccccC
Confidence 457899999876642 1 12499999999995
No 17
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=93.29 E-value=0.047 Score=34.52 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=25.3
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.|+.|++.++.+.-- .-..|..|..||+++.
T Consensus 2 lC~~C~~peT~l~~~-------~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKE-------GRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEE-------TTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEe-------CCcEEEEhhcCCCccc
Confidence 599999999987541 2578999999999874
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.61 E-value=0.35 Score=32.33 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=21.7
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||+....|-. -+--++|..||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcC---------CCCeEECcccCCcc
Confidence 35789999996665521 12358999999865
No 19
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=87.48 E-value=0.31 Score=34.85 Aligned_cols=29 Identities=24% Similarity=0.683 Sum_probs=24.2
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
+.+||.|++..++|-..|+ -+.|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~t---------vV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPST---------IVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEECCCCCCceEEEecCce---------EEEcccCCCE
Confidence 4799999999999977665 4899999863
No 20
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=87.29 E-value=0.39 Score=44.67 Aligned_cols=40 Identities=18% Similarity=0.580 Sum_probs=26.5
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcccC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWKC 314 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 314 (314)
..-.||-||+.-..- .+..+...++ ..|..|.-||+.|+|
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G-~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETG-LRYLSCSLCACEWHY 220 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CC-EEEEEETTTCCEEEC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCC-cEEEEeCCCCCEEee
Confidence 456899999876543 3332222344 559999999999986
No 21
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.82 E-value=0.44 Score=33.80 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=24.4
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-+.+||.|++...+|-..|+ -+.|..||..
T Consensus 14 m~VkCp~C~~~q~VFSha~t---------~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPAT---------KVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCe---------EEEccCcCCE
Confidence 45799999999999976654 4899999863
No 22
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=85.61 E-value=1.2 Score=33.37 Aligned_cols=30 Identities=23% Similarity=0.629 Sum_probs=21.8
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..++||.||. ..+|... +-...|..||+.|
T Consensus 26 ~~y~Cp~CG~-~~v~r~a---------tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACPNCGE-DRVDRQG---------TGIWQCSYCDYKF 55 (83)
T ss_dssp SCEECSSSCC-EEEEEEE---------TTEEEETTTCCEE
T ss_pred ccCcCCCCCC-cceeccC---------CCeEECCCCCCEe
Confidence 3699999997 4444332 3378999999974
No 23
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.55 E-value=0.19 Score=37.77 Aligned_cols=30 Identities=30% Similarity=0.637 Sum_probs=24.2
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-..+||.|++..++|-..|+ .+.|..||..
T Consensus 35 m~VkCp~C~~~~~VFShA~t---------~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQT---------VVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSS---------CCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCc---------EEEccCCCCE
Confidence 35799999999999976654 5889999863
No 24
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=85.22 E-value=0.25 Score=36.84 Aligned_cols=30 Identities=20% Similarity=0.582 Sum_probs=24.1
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-+.+||.|++..++|-..|+ .+.|..||..
T Consensus 31 m~VkCp~C~n~q~VFShA~t---------~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQS---------TIICEKCSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSS---------CEECSSSCCE
T ss_pred EEeECCCCCCeeEEEecCcc---------EEEccCCCCE
Confidence 34599999999999976554 5899999863
No 25
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=85.16 E-value=0.75 Score=34.63 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=28.2
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.+.|.||-|++.+++--.+-- ..++-.+.|..||.+|.
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk----~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDR----ARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEET----TTTEEEEEESSSCCEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEc----cCCEEEEEcccCCCeEE
Confidence 456999999999766544421 24588999999998763
No 26
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=82.61 E-value=0.4 Score=37.16 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=29.1
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
..|+|..|+.+....+-.| |-+.=++|+.|..|.++
T Consensus 12 l~FTC~~C~tRs~k~iSk~---aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMSKQ---AYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEETTTTEEEEEEEEHH---HHHTSEEEEECTTTCCE
T ss_pred EEEEccCCCCcchhhcCHH---HhhCCEEEEEcCCCccc
Confidence 4599999999988766544 56667999999999875
No 27
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=82.21 E-value=0.23 Score=37.03 Aligned_cols=30 Identities=33% Similarity=0.666 Sum_probs=24.6
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-+.+||.|++..++|-..|+ -+.|..||..
T Consensus 33 m~VkCp~C~~~q~VFSha~t---------~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQT---------AVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSS---------CCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCe---------EEEccccCCE
Confidence 45799999999999977665 4889999863
No 28
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=76.36 E-value=0.73 Score=38.28 Aligned_cols=33 Identities=15% Similarity=0.463 Sum_probs=25.7
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
-..|+.|++.++.+.- +.-..|..|..||.++.
T Consensus 104 yVlC~~C~sPdT~L~k-------~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 104 YVICPVCGSPDTKIIK-------RDRFHFLKCEACGAETP 136 (148)
T ss_dssp HSSCSSSCCTTCCCCB-------SSSSBCCCCSSSCCCCC
T ss_pred EEECCCCCCcCcEEEE-------eCCEEEEEecCCCCCcc
Confidence 3689999999987641 23478999999998764
No 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=74.24 E-value=2.1 Score=39.64 Aligned_cols=40 Identities=28% Similarity=0.599 Sum_probs=26.3
Q ss_pred ceecCCCCCCc-eEEEeeeccC--CCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSN-CSYHQMQTRS--ADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~-~~~~q~q~rs--ade~mt~f~~C~~C~~~w~ 313 (314)
...|+.||+.+ ..|+.+-.-+ .+++-....+|..|++-+|
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 45899999854 4444442100 1447788999999998775
No 30
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.39 E-value=2.4 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=19.6
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
...--||+||..- .+..- ..-+.|..||+.+
T Consensus 17 ~~~k~CP~CG~~~-fm~~~---------~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGV-FMADH---------GDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSC-EEEEC---------SSEEECSSSCCEE
T ss_pred EecccCCCCCCce-EEecC---------CCeEECCCCCCEE
Confidence 3456799999853 22211 1247899999863
No 31
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=72.74 E-value=3 Score=35.29 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
-..|+.|++.++.+.-- . +.-..|..|..||++-
T Consensus 96 YVlC~~C~sPdT~L~k~----~-~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 96 FVLCPECENPETDLHVN----P-KKQTIGNSCKACGYRG 129 (170)
T ss_dssp HHSCTTTSSSCEEEEEE----T-TTTEEEEEETTTCCCC
T ss_pred eEECCCCCCCccEEEEe----c-CCCEEEEEccccCCcc
Confidence 36799999999988531 1 3457899999999864
No 32
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.48 E-value=2.9 Score=34.97 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=26.0
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
-..|+.|++.++.+.-- .+.-..|..|..||++-
T Consensus 103 YVlC~~C~sPdT~L~~~-----~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 103 FVLCPECENPETDLHVN-----PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TTSCTTTCCSCCEEEEE-----TTTTEEEEECSSSCCEE
T ss_pred eEECCCCCCCccEEEEe-----cCCCEEEEEccCCCCCC
Confidence 46799999999987531 12347899999999864
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=69.11 E-value=2.3 Score=29.41 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=19.3
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
..||.||+...+|- . -+--++|..||.-
T Consensus 12 ~~Cp~C~~~~lv~D-~--------~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVED-Y--------RAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEEC-S--------SSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEe-C--------CCCeEEeCCCCCE
Confidence 47999999775551 1 1224899999864
No 34
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.86 E-value=3 Score=30.10 Aligned_cols=30 Identities=27% Similarity=0.736 Sum_probs=19.8
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
....+.|+.||..-- + ..+++ +.|..|||+
T Consensus 25 ~~v~Y~C~~CG~~~e----~---~~~d~----irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLS----L---SRTDA----VRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEEC----C---CTTST----TCCSSSCCC
T ss_pred ceEEEECCCCCCcce----e---CCCCC----ccCCCCCce
Confidence 455689999998532 1 12233 379999995
No 35
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=68.35 E-value=2.3 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=22.0
Q ss_pred eecCCCCCCceEE------EeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 275 FKCSGCGKSNCSY------HQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 275 ~~C~~C~~~~~~~------~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..||-||+.+... |.....+---+....+.|..||..|
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 4799999865432 1111111111233578999999876
No 36
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=67.55 E-value=1.7 Score=35.58 Aligned_cols=31 Identities=16% Similarity=0.536 Sum_probs=24.4
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-..|+.|++.++.+.- +.-..|..|..||++
T Consensus 102 yVlC~~C~sPdT~l~k-------~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 102 FVICHECNRPDTRIIR-------EGRISLLKCEACGAK 132 (138)
T ss_dssp HHHHTCCSSCSSCCEE-------ETTTTEEECSTTSCC
T ss_pred EEECCCCCCcCcEEEE-------cCCeEEEEccCCCCC
Confidence 3679999999987752 124689999999986
No 37
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=62.67 E-value=4.2 Score=31.88 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=20.0
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+.-||.||+-=. .+..++.-.+.|.|..||+.+.
T Consensus 4 m~FCp~Cgn~L~------~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLY------PREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCE------ECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEee------EcccCCCCeeEEECCCCCCeEE
Confidence 334999987522 1222222356678999988653
No 38
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=62.57 E-value=3.4 Score=33.55 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.++.-||.||+-= ..+...+.-.+.|.|..||+.+.
T Consensus 22 ~~~~FCPeCgNmL------~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 22 TTFRFCRDCNNML------YPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCCBCTTTCCBC------BCCBCTTTCCBCCBCSSSCCBCC
T ss_pred cCCeeCCCCCCEe------eECccCCCceeEEECCCCCCcEE
Confidence 3444599999732 22322233467889999998653
No 39
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=62.25 E-value=1.1 Score=29.74 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=23.7
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...|..|+-.++..+ |+.+++- +.|..||.+|+
T Consensus 4 ~~~C~~C~tt~Tp~W----R~gp~G~---~LCNaCGl~~k 36 (46)
T 1gnf_A 4 ARECVNCGATATPLW----RRDRTGH---YLCNACGLYHK 36 (46)
T ss_dssp SCCCTTTCCCCCSSC----BCCTTCC---CBCSHHHHHHH
T ss_pred CCCCCCcCCCCCCcC----ccCCCCC---ccchHHHHHHH
Confidence 457999998876433 4555553 68999998875
No 40
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.32 E-value=4.4 Score=28.67 Aligned_cols=29 Identities=34% Similarity=0.806 Sum_probs=19.9
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
...+.|++||..--. + .. .-+.|..|||+
T Consensus 19 ~v~Y~C~~Cg~~~~l------~-~~----~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNTI------Q-AK----EVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCCC------C-SS----SCCCCSSSCCC
T ss_pred CeEEECCCCCCeeec------C-CC----CceECCCCCcE
Confidence 456899999876541 1 12 23789999997
No 41
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=61.17 E-value=1.1 Score=36.84 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=20.7
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-..|+.|++.++.+.- +.-..|..|..||++
T Consensus 103 yVlC~~C~sPdT~l~k-------~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTILKK-------EKKSWYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCCSCS-------SCSTTTSSCCC----
T ss_pred eeECCCCCCcCcEEEE-------eCCeEEEEecCCCCC
Confidence 4689999999986631 234678999999975
No 42
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=58.96 E-value=8.4 Score=30.52 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=22.5
Q ss_pred ceecCCCCC-----CceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGK-----SNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~-----~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..-|.+||. ..+.... ++..-+ .+.|+|..|||.-+
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri---~~~~~~-~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRL---RTKRMP-HVVITCLECGYIMR 105 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEE---ECSSSC-EEEEEETTTCCEEE
T ss_pred HHhccCCCCEeECCCceEEEE---ecCCcc-EEEEECCCCCCEEE
Confidence 457999984 3444332 221112 68899999999754
No 43
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=57.87 E-value=1.2 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.|..|+-.++..+ |+.+++- +.|..||-+|+
T Consensus 3 ~C~~C~tt~Tp~W----R~gp~G~---~LCNaCGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQTTPLW----RRNPEGQ---PLCNACGLFLK 33 (43)
T ss_dssp CCSSSCCCCCSCC----EECTTSC---EECHHHHHHHH
T ss_pred cCCccCCCCCCcc----ccCCCCC---cccHHHHHHHH
Confidence 5899998876444 3455553 78999998875
No 44
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=57.49 E-value=7.2 Score=30.05 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=27.3
Q ss_pred ceecCCCCCCceEEEeeeccCCCCC---CeEEEEcCCCCCc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEP---MTTYVTCAECNKR 311 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~---mt~f~~C~~C~~~ 311 (314)
-.-|..|++++-+..+-++-.-+++ .|.--+|.+|+|.
T Consensus 26 f~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv 66 (106)
T 2jox_A 26 FTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV 66 (106)
T ss_dssp BCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred chhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE
Confidence 3579999999976666666443333 4666789999984
No 45
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=56.14 E-value=8.8 Score=30.57 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=22.4
Q ss_pred ceecCCCCC-----CceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGK-----SNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~-----~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..-|.+|+. ..+..... ..+ .-.+.++|..|||.-+
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri~-~~~---k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRLR-QKR---MPHIVVKCLECGHIMR 100 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEE-CSS---SCEEEEEETTTTEEEE
T ss_pred HHhccCCCCEeECCCceEEEEe-cCC---ccEEEEECCCCCCEEE
Confidence 347999984 34444322 111 1258899999998654
No 46
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=55.80 E-value=10 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=21.0
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
...+..||+||+.- |+.. ....+.|..||+..
T Consensus 15 ~~~~~fCPkCG~~~--~ma~--------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 15 VRKHRFCPRCGPGV--FLAE--------HADRYSCGRCGYTE 46 (55)
T ss_dssp CCSSCCCTTTTTTC--CCEE--------CSSEEECTTTCCCE
T ss_pred EEccccCcCCCCce--eEec--------cCCEEECCCCCCEE
Confidence 34467899999854 2211 11278999999863
No 47
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=53.77 E-value=22 Score=25.73 Aligned_cols=31 Identities=23% Similarity=0.607 Sum_probs=21.9
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
...+.||.||..... .+ -+-+..|..|+..|
T Consensus 25 ~~ky~C~fCgk~~vk-R~---------a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLK-RA---------STSIWVCGHCGYKI 55 (73)
T ss_pred ccCccCCCCCCceeE-EE---------EeEEEECCCCCcEE
Confidence 446899999975442 11 25678999999874
No 48
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=52.91 E-value=6.6 Score=35.04 Aligned_cols=33 Identities=21% Similarity=0.696 Sum_probs=20.7
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..-||.||+..-.-|..- -|..-| -|.+|+..|
T Consensus 34 n~yCPnCG~~~l~~f~nN-----~PVaDF-~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENN-----RPVADF-YCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC---------CCCEE-ECTTTCCEE
T ss_pred CCcCCCCCChhhhhccCC-----Cccccc-ccCCcchhh
Confidence 456999999876555433 344444 499998765
No 49
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.91 E-value=13 Score=28.94 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=40.5
Q ss_pred cCCCChhhhhcCChhh-cCcHH-HHHHHHHHHHhhhhhhccccccCCCccceecCCCCCCceEEEeeeccCCCCCCeEEE
Q 035641 226 IGEVTPERLATMTPEE-LASDE-RRQENEEIKAKFMFKCEVPEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYV 303 (314)
Q Consensus 226 ~G~i~p~~lv~Ms~eE-mas~e-~k~~~~~~~~~~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~ 303 (314)
.+.+++.+|+.+-.-+ +...+ .-..-+.+.+ ++. ..........+.|.+||.. | .+++..=.
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIak-sl~----r~g~~L~v~p~~C~~CG~~---F--------~~~~~kPs 85 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISK-IAK----REGMVLLIKPAQCRKCGFV---F--------KAEINIPS 85 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHH-HHT----TTTEEEEECCCBBTTTCCB---C--------CCCSSCCS
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHH-HHh----cCCcEEEEECcChhhCcCe---e--------cccCCCCC
Confidence 5678888886654432 34445 4343444433 232 1112233556899999986 2 12344447
Q ss_pred EcCCCCCcc
Q 035641 304 TCAECNKRW 312 (314)
Q Consensus 304 ~C~~C~~~w 312 (314)
.|..|+-.|
T Consensus 86 rCP~CkSe~ 94 (105)
T 2gmg_A 86 RCPKCKSEW 94 (105)
T ss_dssp SCSSSCCCC
T ss_pred CCcCCCCCc
Confidence 899998877
No 50
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=50.62 E-value=11 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=21.2
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||.. .+..+. +-+..|..||+.|
T Consensus 59 akytCPfCGk~-~vKR~a---------vGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGED-RVDRQG---------TGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCE-EEEEEE---------TTEEEETTTCCEE
T ss_pred cCCcCCCCCCc-eeEecC---------ceeEECCCCCCEE
Confidence 36899999974 333322 2478999999875
No 51
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.20 E-value=20 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.591 Sum_probs=21.0
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
.+.||.||.... -.+ -+-+..|..||+.|
T Consensus 35 ky~CpfCGk~~v-kR~---------a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAV-KRI---------STGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCE-EEE---------ETTEEEETTTCCEE
T ss_pred ccCCCCCCCcee-Eec---------CcCeEEcCCCCCEE
Confidence 588999998753 211 14478999999875
No 52
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.79 E-value=15 Score=26.34 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=20.2
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
....||.|++.= .|. .+ ....+|..||..|
T Consensus 7 ~iL~CP~ck~~L-~~~------~~---~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRL-EFQ------RA---QAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBE-EEE------TT---TTEEEETTTTEEE
T ss_pred hheECCCCCCcC-EEe------CC---CCEEEcCCCCcee
Confidence 457899999943 231 11 2367899999876
No 53
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=47.73 E-value=7.6 Score=24.02 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.5
Q ss_pred eEEEEcCCCCCc
Q 035641 300 TTYVTCAECNKR 311 (314)
Q Consensus 300 t~f~~C~~C~~~ 311 (314)
..||.|..||+-
T Consensus 4 ~~fY~C~~CGni 15 (36)
T 1dxg_A 4 GDVYKCELCGQV 15 (36)
T ss_dssp TCEEECTTTCCE
T ss_pred ccEEEcCCCCcE
Confidence 458999999874
No 54
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=47.21 E-value=2.7 Score=29.98 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=24.7
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.....|..||-.++-.+ |...++- ++|..||-.|+
T Consensus 7 ~~~~~C~~C~t~~Tp~W----R~gp~G~---~LCNaCGl~~~ 41 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLW----RRNPEGQ---PLCNACGLFLK 41 (66)
T ss_dssp SSSCCCTTTCCCCCSSC----EEETTTE---EECHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcC----CcCCCCC---CccHHHHHHHH
Confidence 34578999998876433 3444553 78999998775
No 55
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.27 E-value=12 Score=26.83 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.2
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
....||.|++.=. |. . .....+|..||..|
T Consensus 7 eiL~CP~ck~~L~-~~------~---~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK-LS------A---DKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE-EC------T---TSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe-Ee------C---CCCEEEcCCCCcEe
Confidence 3478999997533 21 1 13467899999876
No 56
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=46.03 E-value=12 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=21.1
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECN 309 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~ 309 (314)
.+-.|..||.....|-.+- .-.|+|..|.
T Consensus 37 ~N~~CaDCga~~P~WaS~n--------lGvfiC~~CS 65 (147)
T 3dwd_A 37 ENNVCFECGAFNPQWVSVT--------YGIWICLECS 65 (147)
T ss_dssp TTTBCTTTCCBSCCEEETT--------TTEEECHHHH
T ss_pred CCCccCCCCCCCCCeEEec--------ccEeEhHhhC
Confidence 3567999999998886542 2367888884
No 57
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=45.92 E-value=6 Score=26.28 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=5.9
Q ss_pred EEEcCCCCCc
Q 035641 302 YVTCAECNKR 311 (314)
Q Consensus 302 f~~C~~C~~~ 311 (314)
-+.|..||++
T Consensus 23 ~IrCpyCGyr 32 (48)
T 4ayb_P 23 GVRCPYCGYK 32 (48)
T ss_dssp SSCCTTTCCS
T ss_pred CcccCccCcE
Confidence 3556666654
No 58
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.68 E-value=3.8 Score=27.56 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=21.3
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..|.|+.||..=.....++.....+ .-|.|..||..|.
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~---k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMT---GTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTT---TEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCC---CCEECCCCCCccc
Confidence 4589999996322111122111112 2489999998763
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=45.63 E-value=12 Score=33.59 Aligned_cols=34 Identities=32% Similarity=0.708 Sum_probs=21.1
Q ss_pred CccceecCCCCCCceEEEeeecc-CCCCCCeEEEEcCCCCCc
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTR-SADEPMTTYVTCAECNKR 311 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~r-sade~mt~f~~C~~C~~~ 311 (314)
....|.|.+||+. .++-|+. .-.+| ..|..|+.+
T Consensus 131 ~~~~f~C~~C~~~---~~v~~~~~~~~~P----~~Cp~C~~~ 165 (279)
T 1ltl_A 131 VKAVFECRGCMRH---HAVTQSTNMITEP----SLCSECGGR 165 (279)
T ss_dssp EEEEEEETTTCCE---EEEECSSSSCCCC----SCCTTTCCC
T ss_pred EEEEEEcCCCCCE---EEEEecCCcccCC----CcCCCCCCC
Confidence 3456899999964 2333432 23344 379999876
No 60
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=45.48 E-value=2.7 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.465 Sum_probs=24.3
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
....|..||-.++..+ |..+++- +.|..||..|+
T Consensus 6 ~~~~C~~C~tt~Tp~W----R~gp~G~---~LCNACGl~~~ 39 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLW----RRNANGD---PVCNACGLYYK 39 (63)
T ss_dssp TTCCCTTTCCSCCSSC----CCCTTSC---CCCHHHHHHHH
T ss_pred CCCcCCCcCCCCCCcc----CCCCCCC---chhhHHHHHHH
Confidence 3467999998876433 4555554 68999998874
No 61
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=43.98 E-value=10 Score=27.48 Aligned_cols=30 Identities=33% Similarity=0.697 Sum_probs=21.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||.... -|. -+-+..|..||+.|
T Consensus 25 ~ky~C~fCgk~~v------kR~----a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKTV------KRG----AAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSCB------SBC----SSSCBCCSSSCCCC
T ss_pred cCccCCCCCCcee------Eec----CCCeEECCCCCCEE
Confidence 3588999998753 122 24467899998875
No 62
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=43.16 E-value=2.6 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.598 Sum_probs=18.3
Q ss_pred eecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 275 FKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
|.|+.|+..=.....+ ++-..+. -|.|..||..|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEK----PYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSC----SEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCC----CccCCCCCCccC
Confidence 6788887643322111 1111222 378888887663
No 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=42.90 E-value=16 Score=34.98 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=24.4
Q ss_pred cceecCCCCCCceEEEeeeccCC--CCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSA--DEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsa--de~mt~f~~C~~C~~~w 312 (314)
....||.||..-.+-+ ..+.-. .|=+-.-+.|.+||++.
T Consensus 219 ~~s~Cp~C~~~~~t~~-~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNM-KLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEECCTTTCCTTCEEE-EEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ecccCccCCCccEEEE-EEEeCCCCCcEEEEEEECCCCCCcc
Confidence 4468999997654433 323222 22244678999999985
No 64
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.51 E-value=14 Score=26.26 Aligned_cols=30 Identities=10% Similarity=0.331 Sum_probs=20.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
....||.|++.=. |.. + ....+|..||..|
T Consensus 7 ~iL~CP~ck~~L~-~~~------~---~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGPLV-FDK------S---KDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCBCE-EET------T---TTEEEETTTTEEE
T ss_pred hheECCCCCCcCe-EeC------C---CCEEEcCCCCcEe
Confidence 3468999998432 311 1 2467899999876
No 65
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=40.85 E-value=16 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=20.1
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
....||.|++.=. |.. + ....+|..||..|
T Consensus 7 ~iL~CP~ck~~L~-~~~------~---~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLE-YHQ------D---KQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCE-EET------T---TTEEEETTTTEEE
T ss_pred hheECCCCCCcCe-EeC------C---CCEEEcCCCCcEe
Confidence 3578999998432 311 1 2467899999876
No 66
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.39 E-value=11 Score=19.85 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=7.0
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56777776653
No 67
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=39.94 E-value=3.5 Score=29.85 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=23.1
Q ss_pred cceecCCCCCCceEEEeeeccC--CCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRS--ADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rs--ade~mt~f~~C~~C~~~w~ 313 (314)
....|..|+-.++..+ |. .+++ ++|..||-.|+
T Consensus 7 ~~~~C~nC~tt~Tp~W----Rrg~~~~g----~LCNACGl~~~ 41 (71)
T 2kae_A 7 KSFQCSNCSVTETIRW----RNIRSKEG----IQCNACFIYQR 41 (71)
T ss_dssp -CCCCSSSCCSCCSSC----CCCSSSSC----CCSSHHHHHHH
T ss_pred CCCcCCccCCCCCCcc----ccCCCCCC----ccchHHHHHHH
Confidence 3468999999887433 44 3444 68999998775
No 68
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=39.68 E-value=44 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhhH
Q 035641 142 KDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEK 202 (314)
Q Consensus 142 ~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~yk 202 (314)
...+|++++..|-+++.......... |.++|+++|..-.. ..+|-
T Consensus 11 s~~FRq~vi~~i~~a~~~~G~~~~k~---------------a~emEnhvF~Ka~t-kdEYL 55 (77)
T 2gut_A 11 STAFRQKLVSQIEDAMRKAGVAHSKS---------------SKDMESHVFLKAKT-RDEYL 55 (77)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCCSSC---------------HHHHHHHHHHHCSS-HHHHH
T ss_pred CHHHHHHHHHhhHHHHHHhCCCCCCC---------------HHHHHHHHHhccCc-ccchH
Confidence 36899999999999998854332222 46999999987643 24663
No 69
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.68 E-value=5.1 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.666 Sum_probs=16.4
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
....||+|+.+.. +-...|..|||.
T Consensus 13 ~k~iCpkC~a~~~--------------~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNP--------------WGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEEC--------------TTCSSCSSSSSC
T ss_pred CCccCCCCCCcCC--------------CCceecCCCCCc
Confidence 3567999988611 224567788875
No 70
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=39.38 E-value=12 Score=28.39 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=21.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||..... .+ -+-+..|..||+.|
T Consensus 35 ~ky~CpfCgk~~vk-R~---------a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 35 ARYDCSFCGKKTVK-RG---------AAGIWTCSCCKKTV 64 (92)
T ss_dssp SCCCCSSSCSSCCE-EE---------ETTEEECTTTCCEE
T ss_pred cCCcCCCCCCceee-ec---------ccceEEcCCCCCEE
Confidence 35889999977532 11 13478899999875
No 71
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=39.25 E-value=2.3 Score=27.46 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.3
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 30 ~~C~~C~~~f~ 40 (57)
T 1bbo_A 30 YHCTYCNFSFK 40 (57)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhc
Confidence 78888887653
No 72
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=39.00 E-value=18 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=20.9
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
.+.||.||..... .+ -+-+..|..||+.|
T Consensus 36 ky~CpfCgk~~vk-R~---------a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 36 KYFCEFCGKFAVK-RK---------AVGIWGCKDCGKVK 64 (92)
T ss_dssp CBCCTTTCSSCBE-EE---------ETTEEECSSSCCEE
T ss_pred cccCcccCCCeeE-ec---------CcceEEcCCCCCEE
Confidence 5889999987532 11 14478999999875
No 73
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=38.42 E-value=17 Score=27.74 Aligned_cols=40 Identities=3% Similarity=0.081 Sum_probs=26.2
Q ss_pred cceecCCCCCCceEEEeee-------------cc-----CCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQ-------------TR-----SADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q-------------~r-----sade~mt~f~~C~~C~~~w~ 313 (314)
+...||.|++ .-.|+... .+ .-+|.+.-..+|..||..|-
T Consensus 7 dILaCP~cK~-pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YP 64 (97)
T 2k5r_A 7 HLLCSPDTRQ-PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFR 64 (97)
T ss_dssp SSCCCCTTSS-CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEE
T ss_pred hheECCCCCC-cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCcc
Confidence 4568999998 44444321 11 23455677899999998773
No 74
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.91 E-value=14 Score=19.49 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=6.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5677777655
No 75
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=36.31 E-value=79 Score=23.24 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhh
Q 035641 142 KDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAE 201 (314)
Q Consensus 142 ~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~y 201 (314)
...+|+..++-|..++........-.+.-.. +....|..+|..+|+.-.+ -..|
T Consensus 11 t~~lR~hlv~Klv~aI~P~pdp~a~~d~rm~-----~l~~yArkvE~~~ye~A~s-rdeY 64 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTPDPAALKDRRME-----NLVAYAKKVEGDMYESANS-RDEY 64 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSGGGGGSHHHH-----HHHHHHHHHHHHHHTTCSS-HHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCChhhhhhHHHH-----HHHHHHHHHHHHHHHHhcc-HHHH
Confidence 4789999999999998765422111100111 1236789999999987654 2455
No 76
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.10 E-value=5.9 Score=27.07 Aligned_cols=36 Identities=28% Similarity=0.650 Sum_probs=20.7
Q ss_pred ceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
-|.|..||..=.....+ .+-.++-| |.|..||..|.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp----~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRP----RSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCC----EECTTTCCEES
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcC----eECCCCCCCcC
Confidence 37899998643222111 11123333 89999998774
No 77
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.43 E-value=5.1 Score=27.71 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=22.3
Q ss_pred ccceecCCCCCCceEEEee--eccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQM--QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~--q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...|.|+.|+..-.....+ ..+. ..+ ..-|.|..|+..|.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccC
Confidence 3458999999653322222 1111 111 12389999998764
No 78
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=35.21 E-value=22 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=21.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||.... -.+ -+-+..|..||+.|
T Consensus 35 aky~CpfCgk~~v-KR~---------a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAV-KRA---------AVGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEE-EEE---------ETTEEEETTTTEEE
T ss_pred cCCCCCCCCCcee-eec---------CcceEEcCCCCCEE
Confidence 3689999997643 221 14478899998875
No 79
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.00 E-value=12 Score=19.77 Aligned_cols=10 Identities=20% Similarity=0.570 Sum_probs=6.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5677776655
No 80
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=34.86 E-value=6.9 Score=25.05 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.+.|+.||..=.....+ ++-..+.| |.|..||..|.
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKP----YKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCC----EECSSSSCEES
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCC----cCCCCCcchhC
Confidence 47899998643322211 11122223 88999998764
No 81
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=34.20 E-value=82 Score=23.29 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.4
Q ss_pred hHHHHHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHh
Q 035641 3 KKLVTLF--GAAKKAADAAAATNRSEPEVQRCADALKHL 39 (314)
Q Consensus 3 ~~~~el~--~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L 39 (314)
.||+++| |+..+|+..+...+.+..+.+.+-.+|-+|
T Consensus 42 aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 42 VELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4788888 899999998865555556777777766655
No 82
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=34.11 E-value=16 Score=23.16 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=10.0
Q ss_pred CccceecCCCCCC
Q 035641 271 TTDQFKCSGCGKS 283 (314)
Q Consensus 271 ~t~~~~C~~C~~~ 283 (314)
+.+.+.|++||..
T Consensus 6 ~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 6 AEDQVPCEKCGSL 18 (39)
T ss_dssp CCCEEECTTTCCE
T ss_pred cCCCcccccccCc
Confidence 4567889999865
No 83
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.06 E-value=3.4 Score=28.07 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=21.4
Q ss_pred cceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..|.|+.|+..=.....+ ++-..+. -|.|..|+..|.
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~----~~~C~~C~~~f~ 48 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDR----PFKCNYCSFDTK 48 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSC----SEECSSSSCEES
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCC----CEeCCCCCCccC
Confidence 458999998642222111 1111222 289999998764
No 84
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.93 E-value=3.3 Score=28.49 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=22.8
Q ss_pred ccceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...|.|+.|+..=.....+ ++-..+. -|.|..||..|.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~----~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEK----PYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCCC----SEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCCC----CEECCCCCchhC
Confidence 4569999999754332222 1112222 389999998764
No 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.89 E-value=2.9 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.596 Sum_probs=21.8
Q ss_pred ccceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...|.|+.|+..-.....+ ++-..+. -|.|..|+..|.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~----~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEK----PYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSC----CEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCC----CeECCCCCcccC
Confidence 3458999998642222111 1111222 389999998764
No 86
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.77 E-value=35 Score=24.18 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=20.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
....||.|++. -.|.. ++ -..+|..||..|
T Consensus 9 eiL~CP~ck~~-L~~~~------~~---g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGP-LRYLE------SE---QLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCB-CEEET------TT---TEEEETTTTEEE
T ss_pred HHhCCCCCCCc-CeEeC------CC---CEEEcCCCCccc
Confidence 35789999994 33321 22 357899999876
No 87
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.71 E-value=11 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=9.6
Q ss_pred CccceecCCCCC
Q 035641 271 TTDQFKCSGCGK 282 (314)
Q Consensus 271 ~t~~~~C~~C~~ 282 (314)
......||.||.
T Consensus 27 ~p~l~~c~~cGe 38 (60)
T 3v2d_5 27 PPTLVPCPECKA 38 (60)
T ss_dssp CCCCEECTTTCC
T ss_pred CCceeECCCCCC
Confidence 355789999997
No 88
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.59 E-value=16 Score=19.24 Aligned_cols=10 Identities=50% Similarity=1.271 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5666676654
No 89
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.25 E-value=17 Score=19.16 Aligned_cols=10 Identities=20% Similarity=0.846 Sum_probs=6.4
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5676776655
No 90
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=33.08 E-value=31 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.576 Sum_probs=20.3
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCC
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECN 309 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~ 309 (314)
..+-.|..||.....|--+ .. -.|+|..|.
T Consensus 34 p~N~~CaDCga~~P~WaS~-------n~-GvfiC~~Cs 63 (138)
T 2owa_A 34 PENRTCFDCESRNPTWLSL-------SF-AVFICLNCS 63 (138)
T ss_dssp GGGGBCTTTCCBSCCEEET-------TT-TEEECHHHH
T ss_pred cCCCcCCCCcCCCCCeEEe-------cC-CEEEhHhhh
Confidence 3457899999998877433 12 255688883
No 91
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.86 E-value=25 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.547 Sum_probs=20.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcC--CCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCA--ECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~--~C~~~w~ 313 (314)
....||.|++.= .|.. -..+|. .||+.|-
T Consensus 9 ~iL~CP~c~~~L-~~~~-----------~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 9 EILACPACHAPL-EERD-----------AELICTGQDCGLAYP 39 (56)
T ss_dssp TSCCCSSSCSCE-EEET-----------TEEEECSSSCCCEEE
T ss_pred hheeCCCCCCcc-eecC-----------CEEEcCCcCCCcEEe
Confidence 457899999952 2211 457899 8998773
No 92
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=32.77 E-value=12 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.484 Sum_probs=18.1
Q ss_pred CCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 270 GTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 270 ~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
...+...||.||...- ...+|.+||+
T Consensus 26 ~~p~l~~c~~cG~~~~---------------pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKL---------------SHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCEEC---------------TTBCCTTTCB
T ss_pred cCCCceECCCCCCEeC---------------CceEcCCCCc
Confidence 3466789999997532 1467888885
No 93
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=32.41 E-value=12 Score=30.53 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=20.6
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
+-.+.|+ ||.. |++...--.++ ..+.|..|....
T Consensus 110 ~f~~~Cr-CG~~----f~i~~~~l~~~--~~v~C~sCSl~~ 143 (155)
T 2l6l_A 110 SFYLSCR-CGGK----YSVSKDEAEEV--SLISCDTCSLII 143 (155)
T ss_dssp EEEEECS-SSCE----EEEETTHHHHC--CEEECSSSSCEE
T ss_pred EEEEcCC-CCCe----EEecHHHhCCC--CEEECCCCceEE
Confidence 4458998 9964 44432111112 679999998654
No 94
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.09 E-value=9.8 Score=19.84 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=6.2
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 5666666654
No 95
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.50 E-value=55 Score=27.20 Aligned_cols=27 Identities=22% Similarity=0.658 Sum_probs=18.5
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
...+.|+.||.--- .+-|- +|+.||+.
T Consensus 136 ~~~~~C~~CG~i~~---------~~~p~----~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAV---------DEAPE----YCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEE---------SCCCS----BCTTTCCB
T ss_pred CCeeEeCCCCCeeC---------CCCCC----CCCCCCCC
Confidence 45688999997322 23332 89999984
No 96
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.46 E-value=16 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=22.4
Q ss_pred ccceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...+.|+.||..=.....+ .+-..+.| |.|..||..|.
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~----~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQV----FPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSS----EECTTSSCEES
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCc----cCCCCCCCEeC
Confidence 3458999999642222111 11223333 89999998874
No 97
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.98 E-value=13 Score=19.25 Aligned_cols=10 Identities=20% Similarity=0.889 Sum_probs=5.9
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 4566666654
No 98
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.16 E-value=20 Score=18.72 Aligned_cols=10 Identities=40% Similarity=1.218 Sum_probs=6.0
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 5566666554
No 99
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=29.50 E-value=44 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCChhhhhcCChhhcCcHHHHHHHHHHHHhhhhhhccc---cccCCCccceecCCCCCCceEEEeeecc-CCCCCCeEEE
Q 035641 228 EVTPERLATMTPEELASDERRQENEEIKAKFMFKCEVP---EKKKGTTDQFKCSGCGKSNCSYHQMQTR-SADEPMTTYV 303 (314)
Q Consensus 228 ~i~p~~lv~Ms~eEmas~e~k~~~~~~~~~~l~~~~~~---~~~~~~t~~~~C~~C~~~~~~~~q~q~r-sade~mt~f~ 303 (314)
+++++.|-+|+++|+ ++.|..-+..+.+--+..++. .+.+.....+.|.=||. |=+|-| ++...-+-.+
T Consensus 4 ~ltL~vL~tMsa~El--Ed~R~~G~d~RR~LthAVmr~L~~P~gW~~naEy~~EFgGf-----fPVq~RfsP~~~~f~l~ 76 (144)
T 3nct_A 4 ELTLNVLQTMNAQEY--EDIRAAGSDERRELTHAVMRELDAPDNWTMNGEYGSEFGGF-----FPVQVRFTPAHERFHLA 76 (144)
T ss_dssp ---CHHHHHCCHHHH--HHHHHHCHHHHHHHHHHHHHTCCCCTTEEEEECSSSTTCSC-----SSSEEEEEETTCSEEEE
T ss_pred eecHHHHhccCHHHH--HHHHHHhHHHHHHHHHHHHhccCCCccceEeccccccccce-----eeEEEEEcCCCCceEEE
Confidence 689999999999999 777766555544322222221 12222233455665654 433443 1222445555
Q ss_pred EcC
Q 035641 304 TCA 306 (314)
Q Consensus 304 ~C~ 306 (314)
+|.
T Consensus 77 vCS 79 (144)
T 3nct_A 77 LCS 79 (144)
T ss_dssp EEC
T ss_pred EeC
Confidence 664
No 100
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.44 E-value=21 Score=19.96 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.2
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 66777776653
No 101
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=29.06 E-value=27 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=24.3
Q ss_pred ccceecCCCCCCc--eEEE-eeeccCCCC---C--CeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSN--CSYH-QMQTRSADE---P--MTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~--~~~~-q~q~rsade---~--mt~f~~C~~C~~~w 312 (314)
.+..+|+.||+.. ..+. -...-..+| + -.-.|.|..||+.=
T Consensus 117 vn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~ 165 (335)
T 1x3z_A 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNIT 165 (335)
T ss_dssp CSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEE
T ss_pred eCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccc
Confidence 4567999999875 2331 122112222 1 24679999999843
No 102
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.98 E-value=21 Score=20.18 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=7.2
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 66777776653
No 103
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.94 E-value=15 Score=20.80 Aligned_cols=9 Identities=33% Similarity=1.420 Sum_probs=6.8
Q ss_pred CCCCCcccC
Q 035641 306 AECNKRWKC 314 (314)
Q Consensus 306 ~~C~~~w~~ 314 (314)
.+||+.|-|
T Consensus 16 dncgnswac 24 (27)
T 2hgo_A 16 DNCGNSWAC 24 (27)
T ss_dssp CSSSCEEEC
T ss_pred CCcCCcccc
Confidence 469999964
No 104
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.56 E-value=15 Score=19.26 Aligned_cols=10 Identities=20% Similarity=0.913 Sum_probs=5.7
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666554
No 105
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=28.52 E-value=96 Score=22.70 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=26.8
Q ss_pred hHHHHHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHh
Q 035641 3 KKLVTLF--GAAKKAADAAAATNRSEPEVQRCADALKHL 39 (314)
Q Consensus 3 ~~~~el~--~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L 39 (314)
.||+++| |+..+|+.-|...+.+.-+.+.+-.++-+|
T Consensus 38 aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 38 AELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 4788888 899999988866555555677766666554
No 106
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.35 E-value=22 Score=20.04 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=7.3
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 66777776653
No 107
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.34 E-value=4.1 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=21.8
Q ss_pred cceecCCCCCCceEEEee--eccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQM--QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~--q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..+.|+.|+..=.....+ ..+....+ ..-|.|..||..|.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGPS 52 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCSSC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCCCC
Confidence 458999998642221111 11111111 12389999998874
No 108
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.26 E-value=22 Score=19.68 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=6.6
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 8 ~~C~~C~k~f 17 (35)
T 2elx_A 8 YVCALCLKKF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCcchh
Confidence 6677776655
No 109
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=27.63 E-value=14 Score=27.81 Aligned_cols=32 Identities=19% Similarity=0.611 Sum_probs=18.7
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
=.++|| ||.. |++-..--.++ ...+.|..|..
T Consensus 22 y~ypCr-CGd~----F~IteedLe~g-e~iv~C~sCSL 53 (89)
T 2jr7_A 22 YFYPCP-CGDN----FSITKEDLENG-EDVATCPSCSL 53 (89)
T ss_dssp EEEECT-TSSE----EEEEHHHHHHT-CCEEECTTTCC
T ss_pred EEEcCC-CCCE----EEECHHHHhCC-CEEEECCCCcc
Confidence 347998 9886 44421111111 24799999975
No 110
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.57 E-value=23 Score=20.15 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=7.1
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elp_A 10 MKCPYCDFYFM 20 (37)
T ss_dssp EECSSSSCEEC
T ss_pred eECCCCChhhc
Confidence 66777776653
No 111
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.47 E-value=24 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=13.3
Q ss_pred ccceecCCCCCCceEEE
Q 035641 272 TDQFKCSGCGKSNCSYH 288 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~ 288 (314)
...+.||.||..+..|.
T Consensus 28 P~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 28 PDDWCCPVCGVSKDQFS 44 (46)
T ss_dssp CTTCBCTTTCCBGGGEE
T ss_pred CCCCcCcCCCCcHHHcE
Confidence 44579999999887664
No 112
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=27.45 E-value=26 Score=25.17 Aligned_cols=27 Identities=30% Similarity=0.780 Sum_probs=14.9
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+.|| ||.--.+ ++ -..--.|. ||.+-+
T Consensus 5 v~C~-C~~~~~~---------~~-~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRALYS---------RE-GAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCCEEE---------ET-TCSEEEET-TTEEEE
T ss_pred EECC-CCCEEEE---------cC-CCcEEECC-CCCeee
Confidence 6788 8875221 11 22335677 887643
No 113
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.43 E-value=68 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=19.7
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
....+.|+.||.- |. ++.| ..|..||+.
T Consensus 168 ~~~~~~C~~CG~i---~~------g~~p----~~CP~C~~~ 195 (202)
T 1yuz_A 168 DDKFHLCPICGYI---HK------GEDF----EKCPICFRP 195 (202)
T ss_dssp SCCEEECSSSCCE---EE------SSCC----SBCTTTCCB
T ss_pred CCcEEEECCCCCE---Ec------CcCC----CCCCCCCCC
Confidence 3457899999974 21 1334 789999984
No 114
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.06 E-value=9.5 Score=28.12 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceecCCCCCCceEEEee--eccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQM--QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~--q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.+.|+.|+..=.....+ ..+. ..+ ..-|.|..|+..|.
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKI-HTG-IKPYECNICAKRFM 76 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTT-TCC-CCCEECSSSCCEES
T ss_pred CccCCCCCcccCCHHHHHHHHHH-cCC-CCCeeCCCCcchhc
Confidence 48999998642222111 1111 111 12389999998764
No 115
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.59 E-value=74 Score=23.82 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=20.5
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCC
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECN 309 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~ 309 (314)
..+|+.|+....+..+ | -+|....+|..|+
T Consensus 45 ~~~C~~C~G~G~~~~~-~-----G~~~~~~~C~~C~ 74 (104)
T 2ctt_A 45 VQHCHYCGGSGMETIN-T-----GPFVMRSTCRRCG 74 (104)
T ss_dssp CEECSSSSSSCEEEEE-E-----TTEEEEEECSSSS
T ss_pred CccCCCCCCCEEEEEE-e-----CCEEEEEECCcCC
Confidence 4689999988765443 2 2466667888774
No 116
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=22 Score=20.43 Aligned_cols=10 Identities=20% Similarity=0.613 Sum_probs=6.9
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 10 ~~C~~C~k~f 19 (37)
T 2elm_A 10 YYCSQCHYSS 19 (37)
T ss_dssp EECSSSSCEE
T ss_pred eECCCCCccc
Confidence 6677777665
No 117
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=26.39 E-value=20 Score=27.36 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=18.3
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
.+...|++||.. .| -+| -.+|-.||+.
T Consensus 14 KtH~lCrRCG~~--sf-H~q----------K~~CgkCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSK--AY-HLQ----------KSTCGKCGYP 40 (97)
T ss_dssp CCEECCTTTCSS--CE-ETT----------SCCBTTTCTT
T ss_pred CCCCcCCCCCCc--cC-cCc----------cccCcccCCc
Confidence 456789999987 23 223 1389999863
No 118
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.15 E-value=25 Score=19.77 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=6.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2els_A 10 FTCEYCNKVF 19 (36)
T ss_dssp EECTTTCCEE
T ss_pred EECCCCCcee
Confidence 6677776655
No 119
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=25.89 E-value=31 Score=25.25 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
++|..||+.|
T Consensus 44 v~C~~C~~~F 53 (86)
T 2ct7_A 44 ATCPQCHQTF 53 (86)
T ss_dssp EECTTTCCEE
T ss_pred eEeCCCCCcc
Confidence 6676666653
No 120
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.89 E-value=18 Score=18.85 Aligned_cols=10 Identities=30% Similarity=1.115 Sum_probs=5.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4566666554
No 121
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=25.76 E-value=58 Score=25.74 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhcCC----ChhhHhHHHhHHhhcCCCCChhhhhhhhcCCCChhhhh
Q 035641 180 KQVAASVERVMFEKLRPM----GVAEKRKHRSIMFNMSDEKNPDLRRRVLIGEVTPERLA 235 (314)
Q Consensus 180 ~~lA~~IE~alf~~~~~~----~~~yk~k~Rsl~~NLkd~~Np~Lr~~vl~G~i~p~~lv 235 (314)
..++..++..|+++|.+. ....=+-+|.|..|= .-.|.|.+.-..-.|+.++|.
T Consensus 29 ~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIrin~--~~Dp~l~~Aa~~sgl~~~~l~ 86 (120)
T 3e9v_A 29 KVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRINH--KMDPIISRVASQIGLSQPQLH 86 (120)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEECSS--SCCHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEECC--CCCHHHHHHHHHhCCCHHHHH
Confidence 478999999999999763 222356778888773 467888777777667666664
No 122
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.76 E-value=26 Score=19.61 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=6.4
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elt_A 10 YKCPQCSYAS 19 (36)
T ss_dssp EECSSSSCEE
T ss_pred CCCCCCCccc
Confidence 5666676654
No 123
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.69 E-value=27 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.676 Sum_probs=14.9
Q ss_pred ccceecCCCCCCceEEEee
Q 035641 272 TDQFKCSGCGKSNCSYHQM 290 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~ 290 (314)
...+.||.||..+..|..+
T Consensus 34 P~dw~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 34 PDDWVCPLCGVGKDEFEEV 52 (54)
T ss_dssp CTTCBCTTTCCBGGGEEEC
T ss_pred CCCCcCcCCCCcHHHceEc
Confidence 4567999999998877543
No 124
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.58 E-value=17 Score=19.10 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=5.8
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 4566666554
No 125
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.26 E-value=17 Score=19.32 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=5.4
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 4455666544
No 126
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=24.72 E-value=24 Score=26.72 Aligned_cols=12 Identities=50% Similarity=1.176 Sum_probs=5.8
Q ss_pred eecCCCCCCceEE
Q 035641 275 FKCSGCGKSNCSY 287 (314)
Q Consensus 275 ~~C~~C~~~~~~~ 287 (314)
|.|+ |+++-.+|
T Consensus 49 FkC~-C~~Rt~sl 60 (92)
T 2kwq_A 49 FKCP-CGNRTISL 60 (92)
T ss_dssp EECT-TSCEEEES
T ss_pred EECC-CCCceeEe
Confidence 4554 55544444
No 127
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=24.65 E-value=1.7e+02 Score=21.41 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCChhhHhHHHhHHhhcC
Q 035641 143 DSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMGVAEKRKHRSIMFNMS 213 (314)
Q Consensus 143 d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~~~yk~k~Rsl~~NLk 213 (314)
..-|.+-+.-|...|.....-...+...++.. ..-|.+.|.+||..... ...|-+-+|..+..++
T Consensus 9 ~~ERsknv~eL~qiLmDIn~iNGG~~~~~EKl-----k~~A~~FEaaLyaksSS-K~eYmdsMr~ki~aMr 73 (85)
T 2k0n_A 9 NAERAKNVNGLLQVLMDINTLNGGSSDTADKI-----RIHAKNFEAALFAKSSS-KKEYMDSMNEKVAVMR 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHH-----HHHHHHHHHHHHHSCCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHH-----HHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH
Confidence 45566666666666654321111110123222 24578999999986543 4679999998887774
No 128
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=24.55 E-value=23 Score=26.97 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.2
Q ss_pred eEEEEcCCCCC
Q 035641 300 TTYVTCAECNK 310 (314)
Q Consensus 300 t~f~~C~~C~~ 310 (314)
+.|.+|..||.
T Consensus 73 ~~YRvCn~CGk 83 (96)
T 3mhs_E 73 IQYRVCEKCGK 83 (96)
T ss_dssp CCCEEETTTCC
T ss_pred ccchhhhccCC
Confidence 67777888875
No 129
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=24.45 E-value=25 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.607 Sum_probs=18.9
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
=.++|| ||.. |++-..--.++ ...+.|..|..
T Consensus 29 y~y~Cr-CGd~----F~it~edL~~g-e~iv~C~sCSL 60 (83)
T 1wge_A 29 YFYPCP-CGDN----FAITKEDLENG-EDVATCPSCSL 60 (83)
T ss_dssp EEECCS-SSSC----EEEEHHHHHTT-CCEEECTTTCC
T ss_pred EEEeCC-CCCE----EEECHHHHhCC-CEEEECCCCce
Confidence 347898 9987 33321111112 24799999975
No 130
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.28 E-value=19 Score=25.05 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=4.4
Q ss_pred ceecCCCC
Q 035641 274 QFKCSGCG 281 (314)
Q Consensus 274 ~~~C~~C~ 281 (314)
+-.|++||
T Consensus 6 mr~C~~Cg 13 (60)
T 2apo_B 6 MKKCPKCG 13 (60)
T ss_dssp CEECTTTC
T ss_pred ceeCCCCC
Confidence 44566663
No 131
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=24.11 E-value=28 Score=21.60 Aligned_cols=11 Identities=45% Similarity=1.062 Sum_probs=7.5
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 8 ~~C~~C~k~F~ 18 (48)
T 3iuf_A 8 YACDICGKRYK 18 (48)
T ss_dssp EECTTTCCEES
T ss_pred EECCCcCcccC
Confidence 67777777654
No 132
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.11 E-value=32 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.765 Sum_probs=14.4
Q ss_pred ccceecCCCCCCceEEEe
Q 035641 272 TDQFKCSGCGKSNCSYHQ 289 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q 289 (314)
...+.||.||..+..|..
T Consensus 33 P~dw~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 33 PDDWVCPLCGAPKSEFER 50 (52)
T ss_dssp CTTCBCTTTCCBGGGEEE
T ss_pred CCCCcCCCCCCCHHHcEE
Confidence 456799999999887754
No 133
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.06 E-value=37 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=11.9
Q ss_pred CCCCeEEEEcCCCCCc
Q 035641 296 DEPMTTYVTCAECNKR 311 (314)
Q Consensus 296 de~mt~f~~C~~C~~~ 311 (314)
-|+-+.|.+|..||.-
T Consensus 11 le~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 11 LDKPIQYRVCEKCGKP 26 (44)
T ss_dssp CCCCCCEEECTTTCCE
T ss_pred cCccccchhhcccCCc
Confidence 3456778999999863
No 134
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=21 Score=20.06 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=5.8
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elr_A 10 HLCDMCGKKF 19 (36)
T ss_dssp CBCTTTCCBC
T ss_pred eecCcCCCCc
Confidence 5566666554
No 135
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=23.49 E-value=25 Score=28.37 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=6.1
Q ss_pred cceecCCCCC
Q 035641 273 DQFKCSGCGK 282 (314)
Q Consensus 273 ~~~~C~~C~~ 282 (314)
..+.|..||.
T Consensus 69 ~~~~C~~CG~ 78 (139)
T 3a43_A 69 AVFKCRNCNY 78 (139)
T ss_dssp CEEEETTTCC
T ss_pred CcEECCCCCC
Confidence 3566777764
No 136
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.43 E-value=22 Score=20.18 Aligned_cols=10 Identities=20% Similarity=1.145 Sum_probs=5.1
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 12 ~~C~~C~k~f 21 (37)
T 1p7a_A 12 FQCPDCDRSF 21 (37)
T ss_dssp BCCTTTCCCB
T ss_pred ccCCCCCccc
Confidence 4555555544
No 137
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=22.69 E-value=65 Score=31.91 Aligned_cols=12 Identities=25% Similarity=1.035 Sum_probs=9.5
Q ss_pred eEEEEcCCCCCcc
Q 035641 300 TTYVTCAECNKRW 312 (314)
Q Consensus 300 t~f~~C~~C~~~w 312 (314)
.-...|. ||++|
T Consensus 639 ~~~~~c~-~~~~~ 650 (699)
T 4gl2_A 639 NGEIICK-CGQAW 650 (699)
T ss_dssp -CEEECS-SSCEE
T ss_pred CCcEEee-cCchh
Confidence 4667888 99999
No 138
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.56 E-value=32 Score=19.82 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=6.4
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 7 ~~C~~C~k~f 16 (39)
T 1njq_A 7 YTCSFCKREF 16 (39)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 5666676655
No 139
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=26 Score=25.84 Aligned_cols=11 Identities=18% Similarity=0.821 Sum_probs=9.3
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 81 ~~C~~C~k~f~ 91 (115)
T 2dmi_A 81 LKCMYCGHSFE 91 (115)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCCccC
Confidence 78999998774
No 140
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.29 E-value=33 Score=23.24 Aligned_cols=19 Identities=16% Similarity=0.677 Sum_probs=15.1
Q ss_pred ccceecCCCCCCceEEEee
Q 035641 272 TDQFKCSGCGKSNCSYHQM 290 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~ 290 (314)
...+.||.||..+..|..+
T Consensus 34 P~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 34 PADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp CTTCCCTTTCCCGGGEEEC
T ss_pred CCCCcCCCCCCCHHHceec
Confidence 4567999999998887653
No 141
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.11 E-value=11 Score=26.79 Aligned_cols=37 Identities=16% Similarity=0.453 Sum_probs=19.7
Q ss_pred cceecCCCCCCceEEEee----eccCCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQM----QTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~----q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..+.|+.|+..-.....+ ++-..+ .-|.|..|+..|.
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDE----RPFKCQICPYASR 75 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCC----CCEECSSSSCEES
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCC----CCccCCCCCCccC
Confidence 458899988532211111 111122 2388999987764
No 142
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.65 E-value=19 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=6.0
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 5566666554
No 143
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.38 E-value=19 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.999 Sum_probs=5.9
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 4 ~~C~~C~k~f 13 (30)
T 2lvr_A 4 YVCIHCQRQF 13 (30)
Confidence 5566666554
No 144
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.34 E-value=64 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=19.2
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
.+|++||..=....+.+ ...|-|..|..
T Consensus 243 ~pC~~CG~~I~~~~~~g--------R~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAG--------RGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETT--------EEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECC--------CceEECCCCCC
Confidence 58999998654443332 34677999975
No 145
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=21.00 E-value=27 Score=26.15 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=9.0
Q ss_pred EEEEcCCCCCccc
Q 035641 301 TYVTCAECNKRWK 313 (314)
Q Consensus 301 ~f~~C~~C~~~w~ 313 (314)
-+++|..||..|+
T Consensus 20 d~iiClecGK~fK 32 (87)
T 2jsp_A 20 DHIVCLECGGSFK 32 (87)
T ss_dssp SCEECTBTCCEES
T ss_pred CceEecccchhhH
Confidence 3677777777665
No 146
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.95 E-value=24 Score=21.40 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=7.0
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 9 ~~C~~CgK~F~ 19 (36)
T 1fv5_A 9 FMCLPCGIAFS 19 (36)
T ss_dssp CEETTTTEECS
T ss_pred eECCCCCCccC
Confidence 66777776653
No 147
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.90 E-value=37 Score=20.25 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=6.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 13 ~~C~~C~k~F 22 (44)
T 2epv_A 13 YECNECGKAF 22 (44)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCccc
Confidence 5676676655
No 148
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.79 E-value=38 Score=26.27 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=10.9
Q ss_pred ce-ecCCCCCCceEE
Q 035641 274 QF-KCSGCGKSNCSY 287 (314)
Q Consensus 274 ~~-~C~~C~~~~~~~ 287 (314)
.+ .||.||+....+
T Consensus 89 ~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 89 DYGVCEKCHSKNVII 103 (119)
T ss_dssp TTCCCSSSSSCCCEE
T ss_pred CCCcCccccCCCcEE
Confidence 46 899999987654
No 149
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.44 E-value=25 Score=19.90 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 10 ~~C~~C~k~f 19 (37)
T 2elo_A 10 YSCPVCEKSF 19 (37)
T ss_dssp CEETTTTEEC
T ss_pred cCCCCCCCcc
Confidence 5666666654
No 150
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.34 E-value=9.6 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.354 Sum_probs=21.5
Q ss_pred cceecCCCCCCceEEEee--ecc--CCCCCCeEEEEcCCCCCccc
Q 035641 273 DQFKCSGCGKSNCSYHQM--QTR--SADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~--q~r--sade~mt~f~~C~~C~~~w~ 313 (314)
..|.|+.|+..=.....+ ..+ ..++ ..-|.|..|+..|.
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~--~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTEN--VAKFHCPHCDTVIA 56 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSS--CSSEECSSSSCEES
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCC--CCccCCCCCCCccC
Confidence 358999998642221111 111 1221 12389999998764
Done!